Multiple sequence alignment - TraesCS2D01G295300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G295300 chr2D 100.000 6247 0 0 1 6247 377164214 377157968 0.000000e+00 11537.0
1 TraesCS2D01G295300 chr2B 95.129 5933 182 39 297 6164 448879599 448873709 0.000000e+00 9256.0
2 TraesCS2D01G295300 chr2B 98.795 83 1 0 6165 6247 448873682 448873600 1.400000e-31 148.0
3 TraesCS2D01G295300 chr2B 81.215 181 28 2 5887 6067 13813976 13813802 2.350000e-29 141.0
4 TraesCS2D01G295300 chr2A 95.454 5785 171 27 517 6247 511122172 511116426 0.000000e+00 9142.0
5 TraesCS2D01G295300 chr2A 89.916 119 11 1 1962 2080 767958563 767958680 1.080000e-32 152.0
6 TraesCS2D01G295300 chr3B 97.937 921 14 1 3304 4224 1272376 1271461 0.000000e+00 1591.0
7 TraesCS2D01G295300 chr3B 80.233 172 30 3 337 505 20844461 20844631 6.570000e-25 126.0
8 TraesCS2D01G295300 chr6D 95.517 290 13 0 2 291 364056173 364055884 1.230000e-126 464.0
9 TraesCS2D01G295300 chr6D 95.172 290 14 0 2 291 11273266 11273555 5.710000e-125 459.0
10 TraesCS2D01G295300 chr6D 94.828 290 14 1 3 291 292132975 292132686 9.550000e-123 451.0
11 TraesCS2D01G295300 chr6D 94.502 291 16 0 1 291 364045325 364045035 3.430000e-122 449.0
12 TraesCS2D01G295300 chr6D 94.502 291 15 1 1 291 11284200 11284489 1.240000e-121 448.0
13 TraesCS2D01G295300 chr6D 83.146 178 23 7 326 500 315357497 315357324 8.380000e-34 156.0
14 TraesCS2D01G295300 chr7D 95.189 291 14 0 1 291 264618811 264619101 1.590000e-125 460.0
15 TraesCS2D01G295300 chr7D 94.828 290 15 0 2 291 111197967 111198256 2.660000e-123 453.0
16 TraesCS2D01G295300 chr3D 95.189 291 13 1 1 291 563875263 563874974 5.710000e-125 459.0
17 TraesCS2D01G295300 chr5D 94.845 291 15 0 1 291 467622430 467622720 7.380000e-124 455.0
18 TraesCS2D01G295300 chr5D 83.824 136 19 3 327 460 406820459 406820325 6.570000e-25 126.0
19 TraesCS2D01G295300 chr5D 97.368 38 1 0 2753 2790 159612550 159612513 1.450000e-06 65.8
20 TraesCS2D01G295300 chr1D 85.165 182 21 5 325 502 104575868 104575689 1.380000e-41 182.0
21 TraesCS2D01G295300 chr1D 80.702 171 28 5 332 500 354466264 354466431 1.830000e-25 128.0
22 TraesCS2D01G295300 chr3A 80.925 173 24 8 337 503 326554863 326554694 1.830000e-25 128.0
23 TraesCS2D01G295300 chr1A 81.143 175 18 11 337 503 380260853 380260686 6.570000e-25 126.0
24 TraesCS2D01G295300 chr4A 80.000 165 27 6 329 489 574838642 574838804 3.960000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G295300 chr2D 377157968 377164214 6246 True 11537 11537 100.000 1 6247 1 chr2D.!!$R1 6246
1 TraesCS2D01G295300 chr2B 448873600 448879599 5999 True 4702 9256 96.962 297 6247 2 chr2B.!!$R2 5950
2 TraesCS2D01G295300 chr2A 511116426 511122172 5746 True 9142 9142 95.454 517 6247 1 chr2A.!!$R1 5730
3 TraesCS2D01G295300 chr3B 1271461 1272376 915 True 1591 1591 97.937 3304 4224 1 chr3B.!!$R1 920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.033366 CCCAAACCTTTCCAAAGCGG 59.967 55.000 0.00 0.0 34.69 5.52 F
163 164 0.326927 CAAAGCGGACCCCCTCTTAA 59.673 55.000 0.00 0.0 36.53 1.85 F
164 165 0.327259 AAAGCGGACCCCCTCTTAAC 59.673 55.000 0.00 0.0 36.53 2.01 F
1192 1208 0.823769 CGATGTCGAGGAGGGGATCA 60.824 60.000 0.00 0.0 43.02 2.92 F
1309 1325 1.940613 GAGGTTTTGTGCAGTTCGAGT 59.059 47.619 0.00 0.0 0.00 4.18 F
2798 2825 2.093816 TGCATGCACCTTTGTGTTTTGA 60.094 40.909 18.46 0.0 44.65 2.69 F
2857 2884 2.863740 CGCGCTGAACATTCATTAGGTA 59.136 45.455 5.56 0.0 36.46 3.08 F
3337 3369 3.329929 ACAGAATCCGTTGGAGGTAAC 57.670 47.619 0.00 0.0 34.05 2.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1366 1.750193 ACCGAAATCAACATGCCGAT 58.250 45.000 0.00 0.0 0.00 4.18 R
1351 1367 2.093921 TCTACCGAAATCAACATGCCGA 60.094 45.455 0.00 0.0 0.00 5.54 R
1352 1368 2.276201 TCTACCGAAATCAACATGCCG 58.724 47.619 0.00 0.0 0.00 5.69 R
2798 2825 1.697982 GTGGAGTACCAGGTGAACCTT 59.302 52.381 0.76 0.0 46.09 3.50 R
2899 2926 1.952296 GCACCATAAGCTGAATCCCAG 59.048 52.381 0.00 0.0 45.67 4.45 R
4346 4389 5.433526 TCTACCGTTTAATGCATAAGCCTT 58.566 37.500 0.00 0.0 41.13 4.35 R
4962 5024 4.539870 CATCAACCTGCAAAAGTGTGTAG 58.460 43.478 0.00 0.0 0.00 2.74 R
5408 5471 1.892209 GTGAAACCATTGAGGGACGT 58.108 50.000 0.00 0.0 43.89 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.039818 CGAGGAGCAGTACTACCTCA 57.960 55.000 27.21 0.00 46.25 3.86
20 21 2.577700 CGAGGAGCAGTACTACCTCAT 58.422 52.381 27.21 19.68 46.25 2.90
21 22 2.292016 CGAGGAGCAGTACTACCTCATG 59.708 54.545 27.21 16.46 46.25 3.07
22 23 2.035321 GAGGAGCAGTACTACCTCATGC 59.965 54.545 25.09 13.15 45.53 4.06
23 24 1.069358 GGAGCAGTACTACCTCATGCC 59.931 57.143 18.91 4.55 37.61 4.40
24 25 1.069358 GAGCAGTACTACCTCATGCCC 59.931 57.143 14.59 0.00 37.61 5.36
25 26 0.106894 GCAGTACTACCTCATGCCCC 59.893 60.000 0.00 0.00 0.00 5.80
26 27 1.496060 CAGTACTACCTCATGCCCCA 58.504 55.000 0.00 0.00 0.00 4.96
27 28 1.414181 CAGTACTACCTCATGCCCCAG 59.586 57.143 0.00 0.00 0.00 4.45
28 29 1.008449 AGTACTACCTCATGCCCCAGT 59.992 52.381 0.00 0.00 0.00 4.00
29 30 1.838077 GTACTACCTCATGCCCCAGTT 59.162 52.381 0.00 0.00 0.00 3.16
30 31 0.912486 ACTACCTCATGCCCCAGTTC 59.088 55.000 0.00 0.00 0.00 3.01
31 32 0.911769 CTACCTCATGCCCCAGTTCA 59.088 55.000 0.00 0.00 0.00 3.18
32 33 0.911769 TACCTCATGCCCCAGTTCAG 59.088 55.000 0.00 0.00 0.00 3.02
33 34 1.751927 CCTCATGCCCCAGTTCAGC 60.752 63.158 0.00 0.00 0.00 4.26
34 35 1.001764 CTCATGCCCCAGTTCAGCA 60.002 57.895 0.00 0.00 41.50 4.41
35 36 0.609957 CTCATGCCCCAGTTCAGCAA 60.610 55.000 0.00 0.00 40.46 3.91
36 37 0.895100 TCATGCCCCAGTTCAGCAAC 60.895 55.000 0.00 0.00 40.46 4.17
37 38 1.153524 ATGCCCCAGTTCAGCAACA 59.846 52.632 0.00 0.00 40.46 3.33
38 39 1.181098 ATGCCCCAGTTCAGCAACAC 61.181 55.000 0.00 0.00 40.46 3.32
39 40 2.908073 GCCCCAGTTCAGCAACACG 61.908 63.158 0.00 0.00 34.60 4.49
40 41 1.227823 CCCCAGTTCAGCAACACGA 60.228 57.895 0.00 0.00 34.60 4.35
41 42 1.507141 CCCCAGTTCAGCAACACGAC 61.507 60.000 0.00 0.00 34.60 4.34
42 43 0.813610 CCCAGTTCAGCAACACGACA 60.814 55.000 0.00 0.00 34.60 4.35
43 44 1.229428 CCAGTTCAGCAACACGACAT 58.771 50.000 0.00 0.00 34.60 3.06
44 45 1.603802 CCAGTTCAGCAACACGACATT 59.396 47.619 0.00 0.00 34.60 2.71
45 46 2.033299 CCAGTTCAGCAACACGACATTT 59.967 45.455 0.00 0.00 34.60 2.32
46 47 3.489059 CCAGTTCAGCAACACGACATTTT 60.489 43.478 0.00 0.00 34.60 1.82
47 48 3.483196 CAGTTCAGCAACACGACATTTTG 59.517 43.478 0.00 0.00 34.60 2.44
48 49 2.118228 TCAGCAACACGACATTTTGC 57.882 45.000 0.00 0.00 44.93 3.68
49 50 1.403323 TCAGCAACACGACATTTTGCA 59.597 42.857 8.15 0.00 46.62 4.08
50 51 2.034432 TCAGCAACACGACATTTTGCAT 59.966 40.909 8.15 0.00 46.62 3.96
51 52 3.251972 TCAGCAACACGACATTTTGCATA 59.748 39.130 8.15 0.00 46.62 3.14
52 53 3.605056 CAGCAACACGACATTTTGCATAG 59.395 43.478 8.15 0.00 46.62 2.23
53 54 3.501828 AGCAACACGACATTTTGCATAGA 59.498 39.130 8.15 0.00 46.62 1.98
54 55 3.603770 GCAACACGACATTTTGCATAGAC 59.396 43.478 0.00 0.00 44.17 2.59
55 56 4.782156 CAACACGACATTTTGCATAGACA 58.218 39.130 0.00 0.00 0.00 3.41
56 57 5.211454 CAACACGACATTTTGCATAGACAA 58.789 37.500 0.00 0.00 0.00 3.18
57 58 5.034554 ACACGACATTTTGCATAGACAAG 57.965 39.130 0.00 0.00 0.00 3.16
58 59 4.754618 ACACGACATTTTGCATAGACAAGA 59.245 37.500 0.00 0.00 0.00 3.02
59 60 5.238432 ACACGACATTTTGCATAGACAAGAA 59.762 36.000 0.00 0.00 0.00 2.52
60 61 6.142139 CACGACATTTTGCATAGACAAGAAA 58.858 36.000 0.00 0.00 0.00 2.52
61 62 6.636447 CACGACATTTTGCATAGACAAGAAAA 59.364 34.615 0.00 0.00 0.00 2.29
62 63 6.857964 ACGACATTTTGCATAGACAAGAAAAG 59.142 34.615 0.00 0.00 0.00 2.27
63 64 7.077605 CGACATTTTGCATAGACAAGAAAAGA 58.922 34.615 0.00 0.00 0.00 2.52
64 65 7.752239 CGACATTTTGCATAGACAAGAAAAGAT 59.248 33.333 0.00 0.00 0.00 2.40
65 66 8.752766 ACATTTTGCATAGACAAGAAAAGATG 57.247 30.769 0.00 0.00 0.00 2.90
66 67 7.816031 ACATTTTGCATAGACAAGAAAAGATGG 59.184 33.333 0.00 0.00 0.00 3.51
67 68 7.523293 TTTTGCATAGACAAGAAAAGATGGA 57.477 32.000 0.00 0.00 0.00 3.41
68 69 6.748333 TTGCATAGACAAGAAAAGATGGAG 57.252 37.500 0.00 0.00 0.00 3.86
69 70 5.188434 TGCATAGACAAGAAAAGATGGAGG 58.812 41.667 0.00 0.00 0.00 4.30
70 71 5.045651 TGCATAGACAAGAAAAGATGGAGGA 60.046 40.000 0.00 0.00 0.00 3.71
71 72 5.295540 GCATAGACAAGAAAAGATGGAGGAC 59.704 44.000 0.00 0.00 0.00 3.85
72 73 3.931578 AGACAAGAAAAGATGGAGGACG 58.068 45.455 0.00 0.00 0.00 4.79
73 74 2.416893 GACAAGAAAAGATGGAGGACGC 59.583 50.000 0.00 0.00 0.00 5.19
74 75 2.039084 ACAAGAAAAGATGGAGGACGCT 59.961 45.455 0.00 0.00 0.00 5.07
75 76 2.675348 CAAGAAAAGATGGAGGACGCTC 59.325 50.000 0.00 0.00 0.00 5.03
76 77 1.208293 AGAAAAGATGGAGGACGCTCC 59.792 52.381 2.35 2.35 43.60 4.70
82 83 4.921834 GGAGGACGCTCCAAAGAG 57.078 61.111 4.37 0.00 42.86 2.85
93 94 3.930634 CTCCAAAGAGCCAAAGGAAAG 57.069 47.619 0.00 0.00 32.13 2.62
94 95 3.490348 CTCCAAAGAGCCAAAGGAAAGA 58.510 45.455 0.00 0.00 32.13 2.52
95 96 4.085009 CTCCAAAGAGCCAAAGGAAAGAT 58.915 43.478 0.00 0.00 32.13 2.40
96 97 3.828451 TCCAAAGAGCCAAAGGAAAGATG 59.172 43.478 0.00 0.00 0.00 2.90
97 98 3.056322 CCAAAGAGCCAAAGGAAAGATGG 60.056 47.826 0.00 0.00 37.29 3.51
98 99 3.532641 AAGAGCCAAAGGAAAGATGGT 57.467 42.857 0.00 0.00 36.57 3.55
99 100 2.800250 AGAGCCAAAGGAAAGATGGTG 58.200 47.619 0.00 0.00 36.57 4.17
100 101 1.203287 GAGCCAAAGGAAAGATGGTGC 59.797 52.381 0.00 0.00 36.57 5.01
101 102 0.968405 GCCAAAGGAAAGATGGTGCA 59.032 50.000 0.00 0.00 36.57 4.57
102 103 1.344114 GCCAAAGGAAAGATGGTGCAA 59.656 47.619 0.00 0.00 36.57 4.08
103 104 2.224257 GCCAAAGGAAAGATGGTGCAAA 60.224 45.455 0.00 0.00 36.57 3.68
104 105 3.743899 GCCAAAGGAAAGATGGTGCAAAA 60.744 43.478 0.00 0.00 36.57 2.44
105 106 4.060205 CCAAAGGAAAGATGGTGCAAAAG 58.940 43.478 0.00 0.00 0.00 2.27
106 107 4.060205 CAAAGGAAAGATGGTGCAAAAGG 58.940 43.478 0.00 0.00 0.00 3.11
107 108 3.243359 AGGAAAGATGGTGCAAAAGGA 57.757 42.857 0.00 0.00 0.00 3.36
108 109 3.160269 AGGAAAGATGGTGCAAAAGGAG 58.840 45.455 0.00 0.00 0.00 3.69
109 110 2.893489 GGAAAGATGGTGCAAAAGGAGT 59.107 45.455 0.00 0.00 0.00 3.85
110 111 4.079253 GGAAAGATGGTGCAAAAGGAGTA 58.921 43.478 0.00 0.00 0.00 2.59
111 112 4.156739 GGAAAGATGGTGCAAAAGGAGTAG 59.843 45.833 0.00 0.00 0.00 2.57
112 113 4.640771 AAGATGGTGCAAAAGGAGTAGA 57.359 40.909 0.00 0.00 0.00 2.59
113 114 4.851639 AGATGGTGCAAAAGGAGTAGAT 57.148 40.909 0.00 0.00 0.00 1.98
114 115 4.521146 AGATGGTGCAAAAGGAGTAGATG 58.479 43.478 0.00 0.00 0.00 2.90
115 116 3.788227 TGGTGCAAAAGGAGTAGATGT 57.212 42.857 0.00 0.00 0.00 3.06
116 117 3.411446 TGGTGCAAAAGGAGTAGATGTG 58.589 45.455 0.00 0.00 0.00 3.21
117 118 3.181445 TGGTGCAAAAGGAGTAGATGTGT 60.181 43.478 0.00 0.00 0.00 3.72
118 119 4.041075 TGGTGCAAAAGGAGTAGATGTGTA 59.959 41.667 0.00 0.00 0.00 2.90
119 120 4.392138 GGTGCAAAAGGAGTAGATGTGTAC 59.608 45.833 0.00 0.00 0.00 2.90
120 121 4.392138 GTGCAAAAGGAGTAGATGTGTACC 59.608 45.833 0.00 0.00 0.00 3.34
121 122 4.286032 TGCAAAAGGAGTAGATGTGTACCT 59.714 41.667 0.00 0.00 0.00 3.08
122 123 4.631813 GCAAAAGGAGTAGATGTGTACCTG 59.368 45.833 0.00 0.00 0.00 4.00
123 124 5.568825 GCAAAAGGAGTAGATGTGTACCTGA 60.569 44.000 0.00 0.00 0.00 3.86
124 125 6.644347 CAAAAGGAGTAGATGTGTACCTGAT 58.356 40.000 0.00 0.00 0.00 2.90
125 126 5.860941 AAGGAGTAGATGTGTACCTGATG 57.139 43.478 0.00 0.00 0.00 3.07
126 127 5.130705 AGGAGTAGATGTGTACCTGATGA 57.869 43.478 0.00 0.00 0.00 2.92
127 128 5.710646 AGGAGTAGATGTGTACCTGATGAT 58.289 41.667 0.00 0.00 0.00 2.45
128 129 6.139671 AGGAGTAGATGTGTACCTGATGATT 58.860 40.000 0.00 0.00 0.00 2.57
129 130 6.266558 AGGAGTAGATGTGTACCTGATGATTC 59.733 42.308 0.00 0.00 0.00 2.52
130 131 6.412362 AGTAGATGTGTACCTGATGATTCC 57.588 41.667 0.00 0.00 0.00 3.01
131 132 5.899547 AGTAGATGTGTACCTGATGATTCCA 59.100 40.000 0.00 0.00 0.00 3.53
132 133 5.028549 AGATGTGTACCTGATGATTCCAC 57.971 43.478 0.00 0.00 0.00 4.02
133 134 3.627395 TGTGTACCTGATGATTCCACC 57.373 47.619 0.00 0.00 0.00 4.61
134 135 2.238646 TGTGTACCTGATGATTCCACCC 59.761 50.000 0.00 0.00 0.00 4.61
135 136 2.238646 GTGTACCTGATGATTCCACCCA 59.761 50.000 0.00 0.00 0.00 4.51
136 137 2.916269 TGTACCTGATGATTCCACCCAA 59.084 45.455 0.00 0.00 0.00 4.12
137 138 3.332187 TGTACCTGATGATTCCACCCAAA 59.668 43.478 0.00 0.00 0.00 3.28
138 139 2.807676 ACCTGATGATTCCACCCAAAC 58.192 47.619 0.00 0.00 0.00 2.93
139 140 2.102578 CCTGATGATTCCACCCAAACC 58.897 52.381 0.00 0.00 0.00 3.27
140 141 2.291800 CCTGATGATTCCACCCAAACCT 60.292 50.000 0.00 0.00 0.00 3.50
141 142 3.434309 CTGATGATTCCACCCAAACCTT 58.566 45.455 0.00 0.00 0.00 3.50
142 143 3.834231 CTGATGATTCCACCCAAACCTTT 59.166 43.478 0.00 0.00 0.00 3.11
143 144 3.831911 TGATGATTCCACCCAAACCTTTC 59.168 43.478 0.00 0.00 0.00 2.62
144 145 2.604139 TGATTCCACCCAAACCTTTCC 58.396 47.619 0.00 0.00 0.00 3.13
145 146 2.091055 TGATTCCACCCAAACCTTTCCA 60.091 45.455 0.00 0.00 0.00 3.53
146 147 2.552093 TTCCACCCAAACCTTTCCAA 57.448 45.000 0.00 0.00 0.00 3.53
147 148 2.552093 TCCACCCAAACCTTTCCAAA 57.448 45.000 0.00 0.00 0.00 3.28
148 149 2.393646 TCCACCCAAACCTTTCCAAAG 58.606 47.619 0.00 0.00 35.79 2.77
149 150 1.202639 CCACCCAAACCTTTCCAAAGC 60.203 52.381 0.00 0.00 34.69 3.51
150 151 0.750249 ACCCAAACCTTTCCAAAGCG 59.250 50.000 0.00 0.00 34.69 4.68
151 152 0.033366 CCCAAACCTTTCCAAAGCGG 59.967 55.000 0.00 0.00 34.69 5.52
152 153 1.036707 CCAAACCTTTCCAAAGCGGA 58.963 50.000 0.00 0.00 44.40 5.54
153 154 1.269569 CCAAACCTTTCCAAAGCGGAC 60.270 52.381 0.00 0.00 46.36 4.79
154 155 1.037493 AAACCTTTCCAAAGCGGACC 58.963 50.000 0.00 0.00 46.36 4.46
155 156 0.826256 AACCTTTCCAAAGCGGACCC 60.826 55.000 0.00 0.00 46.36 4.46
156 157 1.977009 CCTTTCCAAAGCGGACCCC 60.977 63.158 0.00 0.00 46.36 4.95
157 158 1.977009 CTTTCCAAAGCGGACCCCC 60.977 63.158 0.00 0.00 46.36 5.40
158 159 2.426305 CTTTCCAAAGCGGACCCCCT 62.426 60.000 0.00 0.00 46.36 4.79
159 160 2.420466 TTTCCAAAGCGGACCCCCTC 62.420 60.000 0.00 0.00 46.36 4.30
160 161 3.330720 CCAAAGCGGACCCCCTCT 61.331 66.667 0.00 0.00 36.56 3.69
161 162 2.757077 CAAAGCGGACCCCCTCTT 59.243 61.111 0.00 0.00 39.06 2.85
162 163 1.559065 CCAAAGCGGACCCCCTCTTA 61.559 60.000 0.00 0.00 36.53 2.10
163 164 0.326927 CAAAGCGGACCCCCTCTTAA 59.673 55.000 0.00 0.00 36.53 1.85
164 165 0.327259 AAAGCGGACCCCCTCTTAAC 59.673 55.000 0.00 0.00 36.53 2.01
165 166 0.838987 AAGCGGACCCCCTCTTAACA 60.839 55.000 0.00 0.00 35.83 2.41
166 167 1.221021 GCGGACCCCCTCTTAACAG 59.779 63.158 0.00 0.00 0.00 3.16
167 168 1.551019 GCGGACCCCCTCTTAACAGT 61.551 60.000 0.00 0.00 0.00 3.55
168 169 1.856629 CGGACCCCCTCTTAACAGTA 58.143 55.000 0.00 0.00 0.00 2.74
169 170 1.479730 CGGACCCCCTCTTAACAGTAC 59.520 57.143 0.00 0.00 0.00 2.73
170 171 1.479730 GGACCCCCTCTTAACAGTACG 59.520 57.143 0.00 0.00 0.00 3.67
171 172 2.450476 GACCCCCTCTTAACAGTACGA 58.550 52.381 0.00 0.00 0.00 3.43
172 173 2.165234 GACCCCCTCTTAACAGTACGAC 59.835 54.545 0.00 0.00 0.00 4.34
173 174 2.225217 ACCCCCTCTTAACAGTACGACT 60.225 50.000 0.00 0.00 0.00 4.18
174 175 2.830321 CCCCCTCTTAACAGTACGACTT 59.170 50.000 0.00 0.00 0.00 3.01
175 176 3.260128 CCCCCTCTTAACAGTACGACTTT 59.740 47.826 0.00 0.00 0.00 2.66
176 177 4.492611 CCCCTCTTAACAGTACGACTTTC 58.507 47.826 0.00 0.00 0.00 2.62
177 178 4.492611 CCCTCTTAACAGTACGACTTTCC 58.507 47.826 0.00 0.00 0.00 3.13
178 179 4.220163 CCCTCTTAACAGTACGACTTTCCT 59.780 45.833 0.00 0.00 0.00 3.36
179 180 5.416952 CCCTCTTAACAGTACGACTTTCCTA 59.583 44.000 0.00 0.00 0.00 2.94
180 181 6.096564 CCCTCTTAACAGTACGACTTTCCTAT 59.903 42.308 0.00 0.00 0.00 2.57
181 182 6.973474 CCTCTTAACAGTACGACTTTCCTATG 59.027 42.308 0.00 0.00 0.00 2.23
182 183 7.148120 CCTCTTAACAGTACGACTTTCCTATGA 60.148 40.741 0.00 0.00 0.00 2.15
183 184 7.533426 TCTTAACAGTACGACTTTCCTATGAC 58.467 38.462 0.00 0.00 0.00 3.06
184 185 5.979288 AACAGTACGACTTTCCTATGACT 57.021 39.130 0.00 0.00 0.00 3.41
185 186 5.564048 ACAGTACGACTTTCCTATGACTC 57.436 43.478 0.00 0.00 0.00 3.36
186 187 5.008331 ACAGTACGACTTTCCTATGACTCA 58.992 41.667 0.00 0.00 0.00 3.41
187 188 5.475909 ACAGTACGACTTTCCTATGACTCAA 59.524 40.000 0.00 0.00 0.00 3.02
188 189 6.015688 ACAGTACGACTTTCCTATGACTCAAA 60.016 38.462 0.00 0.00 0.00 2.69
189 190 7.036220 CAGTACGACTTTCCTATGACTCAAAT 58.964 38.462 0.00 0.00 0.00 2.32
190 191 7.221067 CAGTACGACTTTCCTATGACTCAAATC 59.779 40.741 0.00 0.00 0.00 2.17
191 192 5.420409 ACGACTTTCCTATGACTCAAATCC 58.580 41.667 0.00 0.00 0.00 3.01
192 193 5.046591 ACGACTTTCCTATGACTCAAATCCA 60.047 40.000 0.00 0.00 0.00 3.41
193 194 5.292101 CGACTTTCCTATGACTCAAATCCAC 59.708 44.000 0.00 0.00 0.00 4.02
194 195 5.501156 ACTTTCCTATGACTCAAATCCACC 58.499 41.667 0.00 0.00 0.00 4.61
195 196 3.819564 TCCTATGACTCAAATCCACCG 57.180 47.619 0.00 0.00 0.00 4.94
196 197 3.371034 TCCTATGACTCAAATCCACCGA 58.629 45.455 0.00 0.00 0.00 4.69
197 198 3.772572 TCCTATGACTCAAATCCACCGAA 59.227 43.478 0.00 0.00 0.00 4.30
198 199 4.224147 TCCTATGACTCAAATCCACCGAAA 59.776 41.667 0.00 0.00 0.00 3.46
199 200 4.941263 CCTATGACTCAAATCCACCGAAAA 59.059 41.667 0.00 0.00 0.00 2.29
200 201 5.065218 CCTATGACTCAAATCCACCGAAAAG 59.935 44.000 0.00 0.00 0.00 2.27
201 202 4.079980 TGACTCAAATCCACCGAAAAGA 57.920 40.909 0.00 0.00 0.00 2.52
202 203 4.456535 TGACTCAAATCCACCGAAAAGAA 58.543 39.130 0.00 0.00 0.00 2.52
203 204 4.884744 TGACTCAAATCCACCGAAAAGAAA 59.115 37.500 0.00 0.00 0.00 2.52
204 205 5.183014 ACTCAAATCCACCGAAAAGAAAC 57.817 39.130 0.00 0.00 0.00 2.78
205 206 4.642885 ACTCAAATCCACCGAAAAGAAACA 59.357 37.500 0.00 0.00 0.00 2.83
206 207 5.301805 ACTCAAATCCACCGAAAAGAAACAT 59.698 36.000 0.00 0.00 0.00 2.71
207 208 6.488683 ACTCAAATCCACCGAAAAGAAACATA 59.511 34.615 0.00 0.00 0.00 2.29
208 209 6.908825 TCAAATCCACCGAAAAGAAACATAG 58.091 36.000 0.00 0.00 0.00 2.23
209 210 6.712998 TCAAATCCACCGAAAAGAAACATAGA 59.287 34.615 0.00 0.00 0.00 1.98
210 211 6.743575 AATCCACCGAAAAGAAACATAGAG 57.256 37.500 0.00 0.00 0.00 2.43
211 212 5.477607 TCCACCGAAAAGAAACATAGAGA 57.522 39.130 0.00 0.00 0.00 3.10
212 213 5.860611 TCCACCGAAAAGAAACATAGAGAA 58.139 37.500 0.00 0.00 0.00 2.87
213 214 6.292923 TCCACCGAAAAGAAACATAGAGAAA 58.707 36.000 0.00 0.00 0.00 2.52
214 215 6.204108 TCCACCGAAAAGAAACATAGAGAAAC 59.796 38.462 0.00 0.00 0.00 2.78
215 216 6.017440 CCACCGAAAAGAAACATAGAGAAACA 60.017 38.462 0.00 0.00 0.00 2.83
216 217 6.851330 CACCGAAAAGAAACATAGAGAAACAC 59.149 38.462 0.00 0.00 0.00 3.32
217 218 6.017357 ACCGAAAAGAAACATAGAGAAACACC 60.017 38.462 0.00 0.00 0.00 4.16
218 219 6.071463 CGAAAAGAAACATAGAGAAACACCG 58.929 40.000 0.00 0.00 0.00 4.94
219 220 6.292703 CGAAAAGAAACATAGAGAAACACCGT 60.293 38.462 0.00 0.00 0.00 4.83
220 221 6.541111 AAAGAAACATAGAGAAACACCGTC 57.459 37.500 0.00 0.00 0.00 4.79
221 222 5.470047 AGAAACATAGAGAAACACCGTCT 57.530 39.130 0.00 0.00 0.00 4.18
222 223 5.855045 AGAAACATAGAGAAACACCGTCTT 58.145 37.500 0.00 0.00 0.00 3.01
223 224 5.927115 AGAAACATAGAGAAACACCGTCTTC 59.073 40.000 0.00 0.00 0.00 2.87
224 225 4.866508 ACATAGAGAAACACCGTCTTCA 57.133 40.909 0.00 0.00 0.00 3.02
225 226 5.209818 ACATAGAGAAACACCGTCTTCAA 57.790 39.130 0.00 0.00 0.00 2.69
226 227 5.794894 ACATAGAGAAACACCGTCTTCAAT 58.205 37.500 0.00 0.00 0.00 2.57
227 228 6.931838 ACATAGAGAAACACCGTCTTCAATA 58.068 36.000 0.00 0.00 0.00 1.90
228 229 7.036220 ACATAGAGAAACACCGTCTTCAATAG 58.964 38.462 0.00 0.00 0.00 1.73
229 230 5.470047 AGAGAAACACCGTCTTCAATAGT 57.530 39.130 0.00 0.00 0.00 2.12
230 231 5.471257 AGAGAAACACCGTCTTCAATAGTC 58.529 41.667 0.00 0.00 0.00 2.59
231 232 5.244178 AGAGAAACACCGTCTTCAATAGTCT 59.756 40.000 0.00 0.00 0.00 3.24
232 233 5.855045 AGAAACACCGTCTTCAATAGTCTT 58.145 37.500 0.00 0.00 0.00 3.01
233 234 5.927115 AGAAACACCGTCTTCAATAGTCTTC 59.073 40.000 0.00 0.00 0.00 2.87
234 235 3.834610 ACACCGTCTTCAATAGTCTTCG 58.165 45.455 0.00 0.00 0.00 3.79
235 236 3.504906 ACACCGTCTTCAATAGTCTTCGA 59.495 43.478 0.00 0.00 0.00 3.71
236 237 4.099120 CACCGTCTTCAATAGTCTTCGAG 58.901 47.826 0.00 0.00 0.00 4.04
237 238 3.128938 ACCGTCTTCAATAGTCTTCGAGG 59.871 47.826 0.00 0.00 0.00 4.63
238 239 3.489398 CCGTCTTCAATAGTCTTCGAGGG 60.489 52.174 0.00 0.00 0.00 4.30
239 240 3.489398 CGTCTTCAATAGTCTTCGAGGGG 60.489 52.174 0.00 0.00 0.00 4.79
240 241 2.431057 TCTTCAATAGTCTTCGAGGGGC 59.569 50.000 0.00 0.00 0.00 5.80
241 242 1.860641 TCAATAGTCTTCGAGGGGCA 58.139 50.000 0.00 0.00 0.00 5.36
242 243 1.480954 TCAATAGTCTTCGAGGGGCAC 59.519 52.381 0.00 0.00 0.00 5.01
257 258 2.000429 GGCACCAAATCATCTTGTGC 58.000 50.000 4.44 4.44 34.95 4.57
258 259 1.404583 GGCACCAAATCATCTTGTGCC 60.405 52.381 15.25 15.25 41.65 5.01
259 260 1.547372 GCACCAAATCATCTTGTGCCT 59.453 47.619 0.00 0.00 32.19 4.75
260 261 2.754552 GCACCAAATCATCTTGTGCCTA 59.245 45.455 0.00 0.00 32.19 3.93
261 262 3.181493 GCACCAAATCATCTTGTGCCTAG 60.181 47.826 0.00 0.00 32.19 3.02
262 263 4.012374 CACCAAATCATCTTGTGCCTAGT 58.988 43.478 0.00 0.00 0.00 2.57
263 264 4.095483 CACCAAATCATCTTGTGCCTAGTC 59.905 45.833 0.00 0.00 0.00 2.59
264 265 4.263462 ACCAAATCATCTTGTGCCTAGTCA 60.263 41.667 0.00 0.00 0.00 3.41
265 266 4.885907 CCAAATCATCTTGTGCCTAGTCAT 59.114 41.667 0.00 0.00 0.00 3.06
266 267 5.220989 CCAAATCATCTTGTGCCTAGTCATG 60.221 44.000 0.00 0.00 0.00 3.07
267 268 5.363562 AATCATCTTGTGCCTAGTCATGA 57.636 39.130 0.00 0.00 0.00 3.07
268 269 5.563876 ATCATCTTGTGCCTAGTCATGAT 57.436 39.130 0.00 0.00 0.00 2.45
269 270 6.676990 ATCATCTTGTGCCTAGTCATGATA 57.323 37.500 0.00 0.00 30.84 2.15
270 271 6.676990 TCATCTTGTGCCTAGTCATGATAT 57.323 37.500 0.00 0.00 30.84 1.63
271 272 6.461640 TCATCTTGTGCCTAGTCATGATATG 58.538 40.000 0.00 0.00 30.84 1.78
272 273 5.876651 TCTTGTGCCTAGTCATGATATGT 57.123 39.130 0.00 0.00 0.00 2.29
273 274 5.847304 TCTTGTGCCTAGTCATGATATGTC 58.153 41.667 0.00 0.00 0.00 3.06
274 275 5.600069 TCTTGTGCCTAGTCATGATATGTCT 59.400 40.000 0.00 0.00 33.39 3.41
275 276 5.205759 TGTGCCTAGTCATGATATGTCTG 57.794 43.478 0.00 0.00 31.35 3.51
276 277 4.895297 TGTGCCTAGTCATGATATGTCTGA 59.105 41.667 0.00 0.00 31.35 3.27
277 278 5.363580 TGTGCCTAGTCATGATATGTCTGAA 59.636 40.000 0.00 0.00 31.35 3.02
278 279 6.127083 TGTGCCTAGTCATGATATGTCTGAAA 60.127 38.462 0.00 0.00 31.35 2.69
279 280 6.933521 GTGCCTAGTCATGATATGTCTGAAAT 59.066 38.462 0.00 0.00 31.35 2.17
280 281 8.090831 GTGCCTAGTCATGATATGTCTGAAATA 58.909 37.037 0.00 0.00 31.35 1.40
281 282 8.090831 TGCCTAGTCATGATATGTCTGAAATAC 58.909 37.037 0.00 0.00 31.35 1.89
282 283 8.310382 GCCTAGTCATGATATGTCTGAAATACT 58.690 37.037 0.00 0.00 31.35 2.12
283 284 9.853555 CCTAGTCATGATATGTCTGAAATACTC 57.146 37.037 0.00 0.00 31.35 2.59
288 289 8.996271 TCATGATATGTCTGAAATACTCAATGC 58.004 33.333 0.00 0.00 32.17 3.56
289 290 8.780249 CATGATATGTCTGAAATACTCAATGCA 58.220 33.333 0.00 0.00 32.17 3.96
290 291 8.146479 TGATATGTCTGAAATACTCAATGCAC 57.854 34.615 0.00 0.00 32.17 4.57
291 292 7.989170 TGATATGTCTGAAATACTCAATGCACT 59.011 33.333 0.00 0.00 32.17 4.40
292 293 6.674694 ATGTCTGAAATACTCAATGCACTC 57.325 37.500 0.00 0.00 32.17 3.51
293 294 4.937620 TGTCTGAAATACTCAATGCACTCC 59.062 41.667 0.00 0.00 32.17 3.85
294 295 4.937620 GTCTGAAATACTCAATGCACTCCA 59.062 41.667 0.00 0.00 32.17 3.86
295 296 5.587844 GTCTGAAATACTCAATGCACTCCAT 59.412 40.000 0.00 0.00 32.17 3.41
348 352 4.660938 GGCCACCCCATATCCGCC 62.661 72.222 0.00 0.00 0.00 6.13
357 361 2.356125 CCCCATATCCGCCCTAGATTTG 60.356 54.545 0.00 0.00 0.00 2.32
383 388 2.044806 ATATGAGGGTGCCGGTCAGC 62.045 60.000 16.53 16.53 42.24 4.26
394 399 3.047877 GGTCAGCCCGGACGTTTG 61.048 66.667 0.73 0.00 38.70 2.93
396 401 2.027625 GTCAGCCCGGACGTTTGAG 61.028 63.158 0.73 0.00 0.00 3.02
398 403 3.239253 AGCCCGGACGTTTGAGGT 61.239 61.111 0.73 0.00 0.00 3.85
404 409 1.280206 CGGACGTTTGAGGTCGGTTC 61.280 60.000 0.00 0.00 34.08 3.62
479 485 3.053896 GGGCGTTCGAGGGGTTTG 61.054 66.667 0.00 0.00 0.00 2.93
491 497 4.660938 GGTTTGAGGTGCCCGGCT 62.661 66.667 11.61 0.00 0.00 5.52
492 498 3.365265 GTTTGAGGTGCCCGGCTG 61.365 66.667 11.61 0.00 0.00 4.85
500 506 4.175337 TGCCCGGCTGTAGATGCC 62.175 66.667 11.61 0.00 46.42 4.40
509 515 3.873910 GGCTGTAGATGCCTTTAGTTCA 58.126 45.455 0.00 0.00 46.38 3.18
511 517 4.884164 GGCTGTAGATGCCTTTAGTTCATT 59.116 41.667 0.00 0.00 46.38 2.57
512 518 6.055588 GGCTGTAGATGCCTTTAGTTCATTA 58.944 40.000 0.00 0.00 46.38 1.90
513 519 6.542370 GGCTGTAGATGCCTTTAGTTCATTAA 59.458 38.462 0.00 0.00 46.38 1.40
514 520 7.229506 GGCTGTAGATGCCTTTAGTTCATTAAT 59.770 37.037 0.00 0.00 46.38 1.40
515 521 8.624776 GCTGTAGATGCCTTTAGTTCATTAATT 58.375 33.333 0.00 0.00 0.00 1.40
531 539 9.599322 GTTCATTAATTGCTCCTAATTATCACG 57.401 33.333 0.00 0.00 33.78 4.35
646 659 3.802139 GCACAAAGGCAGAAACTAAAACC 59.198 43.478 0.00 0.00 0.00 3.27
647 660 4.679372 GCACAAAGGCAGAAACTAAAACCA 60.679 41.667 0.00 0.00 0.00 3.67
648 661 4.803613 CACAAAGGCAGAAACTAAAACCAC 59.196 41.667 0.00 0.00 0.00 4.16
649 662 4.464597 ACAAAGGCAGAAACTAAAACCACA 59.535 37.500 0.00 0.00 0.00 4.17
800 813 1.734163 AACGCTACCAATTTCCCTCG 58.266 50.000 0.00 0.00 0.00 4.63
945 961 2.997897 GGACCAGGCTCTCCACGT 60.998 66.667 3.28 0.00 33.74 4.49
1011 1027 2.501610 GAGACCATGTCGGGAGGC 59.498 66.667 0.00 0.00 40.22 4.70
1192 1208 0.823769 CGATGTCGAGGAGGGGATCA 60.824 60.000 0.00 0.00 43.02 2.92
1309 1325 1.940613 GAGGTTTTGTGCAGTTCGAGT 59.059 47.619 0.00 0.00 0.00 4.18
1343 1359 5.220510 GCGGAACATCGAACATGTTATACAA 60.221 40.000 11.95 0.00 41.76 2.41
1379 1395 4.178540 TGTTGATTTCGGTAGAATCGTCC 58.821 43.478 0.00 0.00 36.09 4.79
1397 1413 3.202906 GTCCGCAGCTTATTACCATTCA 58.797 45.455 0.00 0.00 0.00 2.57
1424 1440 6.822676 TGAATAATTTGGGGAAACATTGATGC 59.177 34.615 0.00 0.00 0.00 3.91
1463 1479 9.593134 GCATTGGATAGTCTATCGATTTATCTT 57.407 33.333 1.71 0.00 36.03 2.40
1810 1833 7.862372 TGTCATGTTTCTTTTTCTGTGAATAGC 59.138 33.333 0.00 0.00 0.00 2.97
1906 1929 4.264253 TGCTGCTCATGTAGTAATTTGCT 58.736 39.130 0.00 0.00 0.00 3.91
2019 2044 5.357032 GTGTTTATGATGGTTACTTCCCCAG 59.643 44.000 0.00 0.00 33.39 4.45
2142 2168 5.890985 TGAGTTTTCTGGTGAAGGAAATTGA 59.109 36.000 0.00 0.00 35.75 2.57
2143 2169 6.379703 TGAGTTTTCTGGTGAAGGAAATTGAA 59.620 34.615 0.00 0.00 35.75 2.69
2186 2212 5.649395 CCATGATAGGATCACTGTTTGTGTT 59.351 40.000 0.00 0.00 46.27 3.32
2303 2329 5.119588 GCTGTCCATTTTCATTGTTCATGTG 59.880 40.000 0.00 0.00 34.06 3.21
2391 2417 7.353414 ACTCATGATACACTTACTGCATACT 57.647 36.000 0.00 0.00 0.00 2.12
2408 2434 8.481314 ACTGCATACTTGAGAATTTGAGATCTA 58.519 33.333 0.00 0.00 0.00 1.98
2692 2719 3.184581 GCACGTAGAAACCTCTTGTTCTG 59.815 47.826 0.00 0.00 35.67 3.02
2798 2825 2.093816 TGCATGCACCTTTGTGTTTTGA 60.094 40.909 18.46 0.00 44.65 2.69
2857 2884 2.863740 CGCGCTGAACATTCATTAGGTA 59.136 45.455 5.56 0.00 36.46 3.08
2863 2890 6.074088 CGCTGAACATTCATTAGGTATGTCTC 60.074 42.308 0.00 0.00 36.46 3.36
2899 2926 6.456501 TCTCTAGTTTTTCTCACCTTACTGC 58.543 40.000 0.00 0.00 0.00 4.40
2959 2991 8.783833 ATATCGTCATGCTTGATATTAGCTTT 57.216 30.769 5.49 0.00 39.38 3.51
2960 2992 6.925610 TCGTCATGCTTGATATTAGCTTTT 57.074 33.333 5.49 0.00 39.38 2.27
2961 2993 8.607441 ATCGTCATGCTTGATATTAGCTTTTA 57.393 30.769 5.49 0.00 39.38 1.52
2962 2994 7.851508 TCGTCATGCTTGATATTAGCTTTTAC 58.148 34.615 5.49 5.96 39.38 2.01
2963 2995 7.710907 TCGTCATGCTTGATATTAGCTTTTACT 59.289 33.333 5.49 0.00 39.38 2.24
3337 3369 3.329929 ACAGAATCCGTTGGAGGTAAC 57.670 47.619 0.00 0.00 34.05 2.50
3461 3493 8.650490 ACAATGAAATTTCAGTTTTGGAGGTAT 58.350 29.630 25.60 10.04 41.08 2.73
3819 3854 7.113658 TCCATGTTTGGCTTTTGTACTTAAA 57.886 32.000 0.00 0.00 43.29 1.52
3820 3855 7.731054 TCCATGTTTGGCTTTTGTACTTAAAT 58.269 30.769 0.00 0.00 43.29 1.40
3821 3856 8.207545 TCCATGTTTGGCTTTTGTACTTAAATT 58.792 29.630 0.00 0.00 43.29 1.82
3822 3857 9.482627 CCATGTTTGGCTTTTGTACTTAAATTA 57.517 29.630 0.00 0.00 35.85 1.40
4226 4261 7.772332 ATTACTAACTATTTTGCGACCTCTG 57.228 36.000 0.00 0.00 0.00 3.35
4227 4262 5.148651 ACTAACTATTTTGCGACCTCTGT 57.851 39.130 0.00 0.00 0.00 3.41
4228 4263 4.929808 ACTAACTATTTTGCGACCTCTGTG 59.070 41.667 0.00 0.00 0.00 3.66
4229 4264 3.678056 ACTATTTTGCGACCTCTGTGA 57.322 42.857 0.00 0.00 0.00 3.58
4230 4265 4.002906 ACTATTTTGCGACCTCTGTGAA 57.997 40.909 0.00 0.00 0.00 3.18
4231 4266 4.579869 ACTATTTTGCGACCTCTGTGAAT 58.420 39.130 0.00 0.00 0.00 2.57
4232 4267 4.631813 ACTATTTTGCGACCTCTGTGAATC 59.368 41.667 0.00 0.00 0.00 2.52
4346 4389 7.540474 AGGTAATGTGTCAGTCTTCTCTTTA 57.460 36.000 0.00 0.00 0.00 1.85
4376 4419 5.794687 TGCATTAAACGGTAGATTGTCTG 57.205 39.130 0.00 0.00 0.00 3.51
4381 4424 8.276325 GCATTAAACGGTAGATTGTCTGATTAG 58.724 37.037 0.00 0.00 0.00 1.73
4388 4431 6.703607 CGGTAGATTGTCTGATTAGCATTCTT 59.296 38.462 9.71 0.64 30.65 2.52
4619 4662 6.515272 TGGCAAAGATAACTCCAGAATTTC 57.485 37.500 0.00 0.00 0.00 2.17
4625 4668 9.994432 CAAAGATAACTCCAGAATTTCATGTAC 57.006 33.333 0.00 0.00 0.00 2.90
4633 4676 6.703319 TCCAGAATTTCATGTACGTTCCTTA 58.297 36.000 0.00 0.00 0.00 2.69
4856 4902 7.180229 TGGACTCTTGATCTTTGTACTATCCAA 59.820 37.037 0.00 0.00 0.00 3.53
4962 5024 1.452833 GACCCAGGGCTCATGCTTC 60.453 63.158 4.91 0.00 39.59 3.86
5060 5122 4.504858 AGAACAGCACGTATCCTTTAAGG 58.495 43.478 4.29 4.29 36.46 2.69
5332 5394 2.158158 TCTTCCTGGGACTCTTTGGAGA 60.158 50.000 0.00 0.00 41.86 3.71
5408 5471 7.561021 TGTGTTCAGTAACTTATTGCTTTGA 57.439 32.000 0.00 0.00 36.51 2.69
5412 5475 6.462073 TCAGTAACTTATTGCTTTGACGTC 57.538 37.500 9.11 9.11 0.00 4.34
5433 5496 2.225117 CCCTCAATGGTTTCACCTCCTT 60.225 50.000 0.00 0.00 39.58 3.36
5500 5563 0.390472 AGTCTGCCGCTTGAGCTTAC 60.390 55.000 1.07 0.00 39.32 2.34
5570 5633 2.294512 CCTGGTTCTTCCTCTGCAAAAC 59.705 50.000 0.00 0.00 37.07 2.43
5571 5634 2.951642 CTGGTTCTTCCTCTGCAAAACA 59.048 45.455 0.00 0.00 37.07 2.83
5676 5740 5.574443 GCAAATTCCATGCAGAAGAGTTTAC 59.426 40.000 0.00 0.00 43.29 2.01
5719 5783 3.866651 AGGTTTCTGGACTCATCATTCG 58.133 45.455 0.00 0.00 0.00 3.34
5870 5940 9.167311 ACTTTAGCCAGATTTCATTTACACTAG 57.833 33.333 0.00 0.00 0.00 2.57
5871 5941 7.553881 TTAGCCAGATTTCATTTACACTAGC 57.446 36.000 0.00 0.00 0.00 3.42
5883 5953 9.719355 TTCATTTACACTAGCAGAACATCTAAA 57.281 29.630 0.00 0.00 0.00 1.85
5884 5954 9.719355 TCATTTACACTAGCAGAACATCTAAAA 57.281 29.630 0.00 0.00 0.00 1.52
5897 5988 3.885297 ACATCTAAAACAGCAAGTGCACT 59.115 39.130 15.25 15.25 45.16 4.40
5914 6005 2.271800 CACTTGGATCGAAGTGCCTAC 58.728 52.381 29.85 0.00 44.70 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.039818 TGAGGTAGTACTGCTCCTCG 57.960 55.000 24.71 0.00 46.48 4.63
1 2 2.035321 GCATGAGGTAGTACTGCTCCTC 59.965 54.545 24.21 24.21 44.54 3.71
2 3 2.035632 GCATGAGGTAGTACTGCTCCT 58.964 52.381 10.95 12.37 0.00 3.69
3 4 1.069358 GGCATGAGGTAGTACTGCTCC 59.931 57.143 10.95 8.00 33.43 4.70
4 5 1.069358 GGGCATGAGGTAGTACTGCTC 59.931 57.143 10.95 7.11 33.43 4.26
5 6 1.123928 GGGCATGAGGTAGTACTGCT 58.876 55.000 10.95 0.00 33.43 4.24
6 7 0.106894 GGGGCATGAGGTAGTACTGC 59.893 60.000 5.39 3.50 0.00 4.40
7 8 1.414181 CTGGGGCATGAGGTAGTACTG 59.586 57.143 5.39 0.00 0.00 2.74
8 9 1.008449 ACTGGGGCATGAGGTAGTACT 59.992 52.381 0.00 0.00 0.00 2.73
9 10 1.497161 ACTGGGGCATGAGGTAGTAC 58.503 55.000 0.00 0.00 0.00 2.73
10 11 2.116238 GAACTGGGGCATGAGGTAGTA 58.884 52.381 0.00 0.00 0.00 1.82
11 12 0.912486 GAACTGGGGCATGAGGTAGT 59.088 55.000 0.00 0.00 0.00 2.73
12 13 0.911769 TGAACTGGGGCATGAGGTAG 59.088 55.000 0.00 0.00 0.00 3.18
13 14 0.911769 CTGAACTGGGGCATGAGGTA 59.088 55.000 0.00 0.00 0.00 3.08
14 15 1.687612 CTGAACTGGGGCATGAGGT 59.312 57.895 0.00 0.00 0.00 3.85
15 16 1.751927 GCTGAACTGGGGCATGAGG 60.752 63.158 0.00 0.00 0.00 3.86
16 17 0.609957 TTGCTGAACTGGGGCATGAG 60.610 55.000 0.00 0.00 35.84 2.90
17 18 0.895100 GTTGCTGAACTGGGGCATGA 60.895 55.000 0.00 0.00 35.84 3.07
18 19 1.180456 TGTTGCTGAACTGGGGCATG 61.180 55.000 0.00 0.00 35.84 4.06
19 20 1.153524 TGTTGCTGAACTGGGGCAT 59.846 52.632 0.00 0.00 35.84 4.40
20 21 1.827789 GTGTTGCTGAACTGGGGCA 60.828 57.895 0.00 0.00 32.79 5.36
21 22 2.908073 CGTGTTGCTGAACTGGGGC 61.908 63.158 0.00 0.00 32.79 5.80
22 23 1.227823 TCGTGTTGCTGAACTGGGG 60.228 57.895 0.00 0.00 32.79 4.96
23 24 0.813610 TGTCGTGTTGCTGAACTGGG 60.814 55.000 0.00 0.00 32.79 4.45
24 25 1.229428 ATGTCGTGTTGCTGAACTGG 58.771 50.000 0.00 0.00 32.79 4.00
25 26 3.338818 AAATGTCGTGTTGCTGAACTG 57.661 42.857 0.00 0.00 32.79 3.16
26 27 3.694734 CAAAATGTCGTGTTGCTGAACT 58.305 40.909 0.00 0.00 32.79 3.01
27 28 2.216263 GCAAAATGTCGTGTTGCTGAAC 59.784 45.455 12.04 0.00 43.40 3.18
28 29 2.159324 TGCAAAATGTCGTGTTGCTGAA 60.159 40.909 18.65 0.00 46.19 3.02
29 30 1.403323 TGCAAAATGTCGTGTTGCTGA 59.597 42.857 18.65 0.00 46.19 4.26
30 31 1.837648 TGCAAAATGTCGTGTTGCTG 58.162 45.000 18.65 0.00 46.19 4.41
31 32 2.798976 ATGCAAAATGTCGTGTTGCT 57.201 40.000 18.65 4.32 46.19 3.91
32 33 3.603770 GTCTATGCAAAATGTCGTGTTGC 59.396 43.478 12.36 12.36 46.21 4.17
33 34 4.782156 TGTCTATGCAAAATGTCGTGTTG 58.218 39.130 0.00 0.00 0.00 3.33
34 35 5.238432 TCTTGTCTATGCAAAATGTCGTGTT 59.762 36.000 0.00 0.00 0.00 3.32
35 36 4.754618 TCTTGTCTATGCAAAATGTCGTGT 59.245 37.500 0.00 0.00 0.00 4.49
36 37 5.281693 TCTTGTCTATGCAAAATGTCGTG 57.718 39.130 0.00 0.00 0.00 4.35
37 38 5.940192 TTCTTGTCTATGCAAAATGTCGT 57.060 34.783 0.00 0.00 0.00 4.34
38 39 7.077605 TCTTTTCTTGTCTATGCAAAATGTCG 58.922 34.615 0.00 0.00 0.00 4.35
39 40 8.857216 CATCTTTTCTTGTCTATGCAAAATGTC 58.143 33.333 0.00 0.00 0.00 3.06
40 41 7.816031 CCATCTTTTCTTGTCTATGCAAAATGT 59.184 33.333 0.00 0.00 0.00 2.71
41 42 8.030692 TCCATCTTTTCTTGTCTATGCAAAATG 58.969 33.333 0.00 0.00 0.00 2.32
42 43 8.125978 TCCATCTTTTCTTGTCTATGCAAAAT 57.874 30.769 0.00 0.00 0.00 1.82
43 44 7.309377 CCTCCATCTTTTCTTGTCTATGCAAAA 60.309 37.037 0.00 0.00 0.00 2.44
44 45 6.151648 CCTCCATCTTTTCTTGTCTATGCAAA 59.848 38.462 0.00 0.00 0.00 3.68
45 46 5.649395 CCTCCATCTTTTCTTGTCTATGCAA 59.351 40.000 0.00 0.00 0.00 4.08
46 47 5.045651 TCCTCCATCTTTTCTTGTCTATGCA 60.046 40.000 0.00 0.00 0.00 3.96
47 48 5.295540 GTCCTCCATCTTTTCTTGTCTATGC 59.704 44.000 0.00 0.00 0.00 3.14
48 49 5.521735 CGTCCTCCATCTTTTCTTGTCTATG 59.478 44.000 0.00 0.00 0.00 2.23
49 50 5.665459 CGTCCTCCATCTTTTCTTGTCTAT 58.335 41.667 0.00 0.00 0.00 1.98
50 51 4.620803 GCGTCCTCCATCTTTTCTTGTCTA 60.621 45.833 0.00 0.00 0.00 2.59
51 52 3.866449 GCGTCCTCCATCTTTTCTTGTCT 60.866 47.826 0.00 0.00 0.00 3.41
52 53 2.416893 GCGTCCTCCATCTTTTCTTGTC 59.583 50.000 0.00 0.00 0.00 3.18
53 54 2.039084 AGCGTCCTCCATCTTTTCTTGT 59.961 45.455 0.00 0.00 0.00 3.16
54 55 2.675348 GAGCGTCCTCCATCTTTTCTTG 59.325 50.000 0.00 0.00 31.68 3.02
55 56 2.979240 GAGCGTCCTCCATCTTTTCTT 58.021 47.619 0.00 0.00 31.68 2.52
56 57 2.682155 GAGCGTCCTCCATCTTTTCT 57.318 50.000 0.00 0.00 31.68 2.52
73 74 3.490348 TCTTTCCTTTGGCTCTTTGGAG 58.510 45.455 0.00 0.00 42.18 3.86
74 75 3.593442 TCTTTCCTTTGGCTCTTTGGA 57.407 42.857 0.00 0.00 0.00 3.53
75 76 3.056322 CCATCTTTCCTTTGGCTCTTTGG 60.056 47.826 0.00 0.00 0.00 3.28
76 77 3.575687 ACCATCTTTCCTTTGGCTCTTTG 59.424 43.478 0.00 0.00 33.66 2.77
77 78 3.575687 CACCATCTTTCCTTTGGCTCTTT 59.424 43.478 0.00 0.00 33.66 2.52
78 79 3.160269 CACCATCTTTCCTTTGGCTCTT 58.840 45.455 0.00 0.00 33.66 2.85
79 80 2.800250 CACCATCTTTCCTTTGGCTCT 58.200 47.619 0.00 0.00 33.66 4.09
80 81 1.203287 GCACCATCTTTCCTTTGGCTC 59.797 52.381 0.00 0.00 33.66 4.70
81 82 1.260544 GCACCATCTTTCCTTTGGCT 58.739 50.000 0.00 0.00 33.66 4.75
82 83 0.968405 TGCACCATCTTTCCTTTGGC 59.032 50.000 0.00 0.00 33.66 4.52
83 84 3.749665 TTTGCACCATCTTTCCTTTGG 57.250 42.857 0.00 0.00 36.56 3.28
84 85 4.060205 CCTTTTGCACCATCTTTCCTTTG 58.940 43.478 0.00 0.00 0.00 2.77
85 86 3.966665 TCCTTTTGCACCATCTTTCCTTT 59.033 39.130 0.00 0.00 0.00 3.11
86 87 3.575687 CTCCTTTTGCACCATCTTTCCTT 59.424 43.478 0.00 0.00 0.00 3.36
87 88 3.160269 CTCCTTTTGCACCATCTTTCCT 58.840 45.455 0.00 0.00 0.00 3.36
88 89 2.893489 ACTCCTTTTGCACCATCTTTCC 59.107 45.455 0.00 0.00 0.00 3.13
89 90 5.003804 TCTACTCCTTTTGCACCATCTTTC 58.996 41.667 0.00 0.00 0.00 2.62
90 91 4.985538 TCTACTCCTTTTGCACCATCTTT 58.014 39.130 0.00 0.00 0.00 2.52
91 92 4.640771 TCTACTCCTTTTGCACCATCTT 57.359 40.909 0.00 0.00 0.00 2.40
92 93 4.018960 ACATCTACTCCTTTTGCACCATCT 60.019 41.667 0.00 0.00 0.00 2.90
93 94 4.095483 CACATCTACTCCTTTTGCACCATC 59.905 45.833 0.00 0.00 0.00 3.51
94 95 4.012374 CACATCTACTCCTTTTGCACCAT 58.988 43.478 0.00 0.00 0.00 3.55
95 96 3.181445 ACACATCTACTCCTTTTGCACCA 60.181 43.478 0.00 0.00 0.00 4.17
96 97 3.412386 ACACATCTACTCCTTTTGCACC 58.588 45.455 0.00 0.00 0.00 5.01
97 98 4.392138 GGTACACATCTACTCCTTTTGCAC 59.608 45.833 0.00 0.00 0.00 4.57
98 99 4.286032 AGGTACACATCTACTCCTTTTGCA 59.714 41.667 0.00 0.00 0.00 4.08
99 100 4.631813 CAGGTACACATCTACTCCTTTTGC 59.368 45.833 0.00 0.00 0.00 3.68
100 101 6.037786 TCAGGTACACATCTACTCCTTTTG 57.962 41.667 0.00 0.00 0.00 2.44
101 102 6.440647 TCATCAGGTACACATCTACTCCTTTT 59.559 38.462 0.00 0.00 0.00 2.27
102 103 5.958380 TCATCAGGTACACATCTACTCCTTT 59.042 40.000 0.00 0.00 0.00 3.11
103 104 5.519808 TCATCAGGTACACATCTACTCCTT 58.480 41.667 0.00 0.00 0.00 3.36
104 105 5.130705 TCATCAGGTACACATCTACTCCT 57.869 43.478 0.00 0.00 0.00 3.69
105 106 6.412362 AATCATCAGGTACACATCTACTCC 57.588 41.667 0.00 0.00 0.00 3.85
106 107 6.040955 TGGAATCATCAGGTACACATCTACTC 59.959 42.308 0.00 0.00 0.00 2.59
107 108 5.899547 TGGAATCATCAGGTACACATCTACT 59.100 40.000 0.00 0.00 0.00 2.57
108 109 5.986135 GTGGAATCATCAGGTACACATCTAC 59.014 44.000 0.00 0.00 0.00 2.59
109 110 5.070446 GGTGGAATCATCAGGTACACATCTA 59.930 44.000 0.00 0.00 0.00 1.98
110 111 4.141620 GGTGGAATCATCAGGTACACATCT 60.142 45.833 0.00 0.00 0.00 2.90
111 112 4.130118 GGTGGAATCATCAGGTACACATC 58.870 47.826 0.00 0.00 0.00 3.06
112 113 3.117888 GGGTGGAATCATCAGGTACACAT 60.118 47.826 0.00 0.00 0.00 3.21
113 114 2.238646 GGGTGGAATCATCAGGTACACA 59.761 50.000 0.00 0.00 0.00 3.72
114 115 2.238646 TGGGTGGAATCATCAGGTACAC 59.761 50.000 0.00 0.00 0.00 2.90
115 116 2.556766 TGGGTGGAATCATCAGGTACA 58.443 47.619 0.00 0.00 0.00 2.90
116 117 3.644966 TTGGGTGGAATCATCAGGTAC 57.355 47.619 0.00 0.00 0.00 3.34
117 118 3.308832 GGTTTGGGTGGAATCATCAGGTA 60.309 47.826 0.00 0.00 0.00 3.08
118 119 2.557452 GGTTTGGGTGGAATCATCAGGT 60.557 50.000 0.00 0.00 0.00 4.00
119 120 2.102578 GGTTTGGGTGGAATCATCAGG 58.897 52.381 0.00 0.00 0.00 3.86
120 121 3.091633 AGGTTTGGGTGGAATCATCAG 57.908 47.619 0.00 0.00 0.00 2.90
121 122 3.541242 AAGGTTTGGGTGGAATCATCA 57.459 42.857 0.00 0.00 0.00 3.07
122 123 3.195610 GGAAAGGTTTGGGTGGAATCATC 59.804 47.826 0.00 0.00 0.00 2.92
123 124 3.173151 GGAAAGGTTTGGGTGGAATCAT 58.827 45.455 0.00 0.00 0.00 2.45
124 125 2.091055 TGGAAAGGTTTGGGTGGAATCA 60.091 45.455 0.00 0.00 0.00 2.57
125 126 2.604139 TGGAAAGGTTTGGGTGGAATC 58.396 47.619 0.00 0.00 0.00 2.52
126 127 2.785357 TGGAAAGGTTTGGGTGGAAT 57.215 45.000 0.00 0.00 0.00 3.01
127 128 2.552093 TTGGAAAGGTTTGGGTGGAA 57.448 45.000 0.00 0.00 0.00 3.53
128 129 2.393646 CTTTGGAAAGGTTTGGGTGGA 58.606 47.619 0.00 0.00 32.40 4.02
129 130 1.202639 GCTTTGGAAAGGTTTGGGTGG 60.203 52.381 1.45 0.00 36.53 4.61
130 131 1.537990 CGCTTTGGAAAGGTTTGGGTG 60.538 52.381 1.45 0.00 36.53 4.61
131 132 0.750249 CGCTTTGGAAAGGTTTGGGT 59.250 50.000 1.45 0.00 36.53 4.51
132 133 0.033366 CCGCTTTGGAAAGGTTTGGG 59.967 55.000 1.45 0.00 42.00 4.12
133 134 1.036707 TCCGCTTTGGAAAGGTTTGG 58.963 50.000 1.45 0.00 46.38 3.28
143 144 3.330720 AGAGGGGGTCCGCTTTGG 61.331 66.667 8.01 0.00 40.39 3.28
147 148 1.229400 TGTTAAGAGGGGGTCCGCT 60.229 57.895 6.27 6.27 45.35 5.52
148 149 1.221021 CTGTTAAGAGGGGGTCCGC 59.779 63.158 0.00 0.00 38.33 5.54
149 150 1.479730 GTACTGTTAAGAGGGGGTCCG 59.520 57.143 4.45 0.00 38.33 4.79
150 151 1.479730 CGTACTGTTAAGAGGGGGTCC 59.520 57.143 4.45 0.00 0.00 4.46
151 152 2.165234 GTCGTACTGTTAAGAGGGGGTC 59.835 54.545 4.45 0.00 0.00 4.46
152 153 2.174360 GTCGTACTGTTAAGAGGGGGT 58.826 52.381 4.45 0.00 0.00 4.95
153 154 2.454538 AGTCGTACTGTTAAGAGGGGG 58.545 52.381 4.45 0.00 0.00 5.40
154 155 4.492611 GAAAGTCGTACTGTTAAGAGGGG 58.507 47.826 4.45 0.00 0.00 4.79
155 156 4.220163 AGGAAAGTCGTACTGTTAAGAGGG 59.780 45.833 4.45 0.00 0.00 4.30
156 157 5.388408 AGGAAAGTCGTACTGTTAAGAGG 57.612 43.478 4.45 0.00 0.00 3.69
157 158 7.697291 GTCATAGGAAAGTCGTACTGTTAAGAG 59.303 40.741 0.00 0.00 0.00 2.85
158 159 7.392673 AGTCATAGGAAAGTCGTACTGTTAAGA 59.607 37.037 0.00 0.00 0.00 2.10
159 160 7.536855 AGTCATAGGAAAGTCGTACTGTTAAG 58.463 38.462 0.00 0.00 0.00 1.85
160 161 7.175467 TGAGTCATAGGAAAGTCGTACTGTTAA 59.825 37.037 0.00 0.00 0.00 2.01
161 162 6.656270 TGAGTCATAGGAAAGTCGTACTGTTA 59.344 38.462 0.00 0.00 0.00 2.41
162 163 5.475909 TGAGTCATAGGAAAGTCGTACTGTT 59.524 40.000 0.00 0.00 0.00 3.16
163 164 5.008331 TGAGTCATAGGAAAGTCGTACTGT 58.992 41.667 0.00 0.00 0.00 3.55
164 165 5.562506 TGAGTCATAGGAAAGTCGTACTG 57.437 43.478 0.00 0.00 0.00 2.74
165 166 6.585695 TTTGAGTCATAGGAAAGTCGTACT 57.414 37.500 0.00 0.00 0.00 2.73
166 167 6.476053 GGATTTGAGTCATAGGAAAGTCGTAC 59.524 42.308 0.00 0.00 0.00 3.67
167 168 6.153851 TGGATTTGAGTCATAGGAAAGTCGTA 59.846 38.462 0.00 0.00 0.00 3.43
168 169 5.046591 TGGATTTGAGTCATAGGAAAGTCGT 60.047 40.000 0.00 0.00 0.00 4.34
169 170 5.292101 GTGGATTTGAGTCATAGGAAAGTCG 59.708 44.000 0.00 0.00 0.00 4.18
170 171 5.586643 GGTGGATTTGAGTCATAGGAAAGTC 59.413 44.000 0.00 0.00 0.00 3.01
171 172 5.501156 GGTGGATTTGAGTCATAGGAAAGT 58.499 41.667 0.00 0.00 0.00 2.66
172 173 4.572389 CGGTGGATTTGAGTCATAGGAAAG 59.428 45.833 0.00 0.00 0.00 2.62
173 174 4.224147 TCGGTGGATTTGAGTCATAGGAAA 59.776 41.667 0.00 0.00 0.00 3.13
174 175 3.772572 TCGGTGGATTTGAGTCATAGGAA 59.227 43.478 0.00 0.00 0.00 3.36
175 176 3.371034 TCGGTGGATTTGAGTCATAGGA 58.629 45.455 0.00 0.00 0.00 2.94
176 177 3.819564 TCGGTGGATTTGAGTCATAGG 57.180 47.619 0.00 0.00 0.00 2.57
177 178 5.874810 TCTTTTCGGTGGATTTGAGTCATAG 59.125 40.000 0.00 0.00 0.00 2.23
178 179 5.800296 TCTTTTCGGTGGATTTGAGTCATA 58.200 37.500 0.00 0.00 0.00 2.15
179 180 4.651778 TCTTTTCGGTGGATTTGAGTCAT 58.348 39.130 0.00 0.00 0.00 3.06
180 181 4.079980 TCTTTTCGGTGGATTTGAGTCA 57.920 40.909 0.00 0.00 0.00 3.41
181 182 5.212934 GTTTCTTTTCGGTGGATTTGAGTC 58.787 41.667 0.00 0.00 0.00 3.36
182 183 4.642885 TGTTTCTTTTCGGTGGATTTGAGT 59.357 37.500 0.00 0.00 0.00 3.41
183 184 5.181690 TGTTTCTTTTCGGTGGATTTGAG 57.818 39.130 0.00 0.00 0.00 3.02
184 185 5.782893 ATGTTTCTTTTCGGTGGATTTGA 57.217 34.783 0.00 0.00 0.00 2.69
185 186 6.908825 TCTATGTTTCTTTTCGGTGGATTTG 58.091 36.000 0.00 0.00 0.00 2.32
186 187 6.940298 TCTCTATGTTTCTTTTCGGTGGATTT 59.060 34.615 0.00 0.00 0.00 2.17
187 188 6.472887 TCTCTATGTTTCTTTTCGGTGGATT 58.527 36.000 0.00 0.00 0.00 3.01
188 189 6.049955 TCTCTATGTTTCTTTTCGGTGGAT 57.950 37.500 0.00 0.00 0.00 3.41
189 190 5.477607 TCTCTATGTTTCTTTTCGGTGGA 57.522 39.130 0.00 0.00 0.00 4.02
190 191 6.017440 TGTTTCTCTATGTTTCTTTTCGGTGG 60.017 38.462 0.00 0.00 0.00 4.61
191 192 6.851330 GTGTTTCTCTATGTTTCTTTTCGGTG 59.149 38.462 0.00 0.00 0.00 4.94
192 193 6.017357 GGTGTTTCTCTATGTTTCTTTTCGGT 60.017 38.462 0.00 0.00 0.00 4.69
193 194 6.371389 GGTGTTTCTCTATGTTTCTTTTCGG 58.629 40.000 0.00 0.00 0.00 4.30
194 195 6.071463 CGGTGTTTCTCTATGTTTCTTTTCG 58.929 40.000 0.00 0.00 0.00 3.46
195 196 6.956047 ACGGTGTTTCTCTATGTTTCTTTTC 58.044 36.000 0.00 0.00 0.00 2.29
196 197 6.766467 AGACGGTGTTTCTCTATGTTTCTTTT 59.234 34.615 0.00 0.00 0.00 2.27
197 198 6.289064 AGACGGTGTTTCTCTATGTTTCTTT 58.711 36.000 0.00 0.00 0.00 2.52
198 199 5.855045 AGACGGTGTTTCTCTATGTTTCTT 58.145 37.500 0.00 0.00 0.00 2.52
199 200 5.470047 AGACGGTGTTTCTCTATGTTTCT 57.530 39.130 0.00 0.00 0.00 2.52
200 201 5.694910 TGAAGACGGTGTTTCTCTATGTTTC 59.305 40.000 0.00 0.00 0.00 2.78
201 202 5.607477 TGAAGACGGTGTTTCTCTATGTTT 58.393 37.500 0.00 0.00 0.00 2.83
202 203 5.209818 TGAAGACGGTGTTTCTCTATGTT 57.790 39.130 0.00 0.00 0.00 2.71
203 204 4.866508 TGAAGACGGTGTTTCTCTATGT 57.133 40.909 0.00 0.00 0.00 2.29
204 205 7.036220 ACTATTGAAGACGGTGTTTCTCTATG 58.964 38.462 0.00 0.00 0.00 2.23
205 206 7.122948 AGACTATTGAAGACGGTGTTTCTCTAT 59.877 37.037 0.00 0.00 0.00 1.98
206 207 6.433404 AGACTATTGAAGACGGTGTTTCTCTA 59.567 38.462 0.00 0.00 0.00 2.43
207 208 5.244178 AGACTATTGAAGACGGTGTTTCTCT 59.756 40.000 0.00 0.00 0.00 3.10
208 209 5.471257 AGACTATTGAAGACGGTGTTTCTC 58.529 41.667 0.00 0.00 0.00 2.87
209 210 5.470047 AGACTATTGAAGACGGTGTTTCT 57.530 39.130 0.00 0.00 0.00 2.52
210 211 5.164080 CGAAGACTATTGAAGACGGTGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
211 212 4.684703 CGAAGACTATTGAAGACGGTGTTT 59.315 41.667 0.00 0.00 0.00 2.83
212 213 4.022589 TCGAAGACTATTGAAGACGGTGTT 60.023 41.667 0.00 0.00 0.00 3.32
213 214 3.504906 TCGAAGACTATTGAAGACGGTGT 59.495 43.478 0.00 0.00 0.00 4.16
214 215 4.092771 TCGAAGACTATTGAAGACGGTG 57.907 45.455 0.00 0.00 0.00 4.94
215 216 3.128938 CCTCGAAGACTATTGAAGACGGT 59.871 47.826 0.00 0.00 0.00 4.83
216 217 3.489398 CCCTCGAAGACTATTGAAGACGG 60.489 52.174 0.00 0.00 0.00 4.79
217 218 3.489398 CCCCTCGAAGACTATTGAAGACG 60.489 52.174 0.00 0.00 0.00 4.18
218 219 3.738590 GCCCCTCGAAGACTATTGAAGAC 60.739 52.174 0.00 0.00 0.00 3.01
219 220 2.431057 GCCCCTCGAAGACTATTGAAGA 59.569 50.000 0.00 0.00 0.00 2.87
220 221 2.168521 TGCCCCTCGAAGACTATTGAAG 59.831 50.000 0.00 0.00 0.00 3.02
221 222 2.093658 GTGCCCCTCGAAGACTATTGAA 60.094 50.000 0.00 0.00 0.00 2.69
222 223 1.480954 GTGCCCCTCGAAGACTATTGA 59.519 52.381 0.00 0.00 0.00 2.57
223 224 1.473434 GGTGCCCCTCGAAGACTATTG 60.473 57.143 0.00 0.00 0.00 1.90
224 225 0.831307 GGTGCCCCTCGAAGACTATT 59.169 55.000 0.00 0.00 0.00 1.73
225 226 0.325296 TGGTGCCCCTCGAAGACTAT 60.325 55.000 0.00 0.00 0.00 2.12
226 227 0.543410 TTGGTGCCCCTCGAAGACTA 60.543 55.000 0.00 0.00 0.00 2.59
227 228 1.415672 TTTGGTGCCCCTCGAAGACT 61.416 55.000 0.00 0.00 0.00 3.24
228 229 0.322546 ATTTGGTGCCCCTCGAAGAC 60.323 55.000 0.00 0.00 0.00 3.01
229 230 0.035439 GATTTGGTGCCCCTCGAAGA 60.035 55.000 0.00 0.00 0.00 2.87
230 231 0.322456 TGATTTGGTGCCCCTCGAAG 60.322 55.000 0.00 0.00 0.00 3.79
231 232 0.331278 ATGATTTGGTGCCCCTCGAA 59.669 50.000 0.00 0.00 0.00 3.71
232 233 0.107214 GATGATTTGGTGCCCCTCGA 60.107 55.000 0.00 0.00 0.00 4.04
233 234 0.107017 AGATGATTTGGTGCCCCTCG 60.107 55.000 0.00 0.00 0.00 4.63
234 235 1.753073 CAAGATGATTTGGTGCCCCTC 59.247 52.381 0.00 0.00 0.00 4.30
235 236 1.077663 ACAAGATGATTTGGTGCCCCT 59.922 47.619 0.00 0.00 32.32 4.79
236 237 1.205417 CACAAGATGATTTGGTGCCCC 59.795 52.381 0.00 0.00 32.32 5.80
237 238 1.404583 GCACAAGATGATTTGGTGCCC 60.405 52.381 4.21 0.00 33.23 5.36
238 239 1.404583 GGCACAAGATGATTTGGTGCC 60.405 52.381 17.51 17.51 42.35 5.01
239 240 1.547372 AGGCACAAGATGATTTGGTGC 59.453 47.619 6.91 6.91 35.88 5.01
240 241 4.012374 ACTAGGCACAAGATGATTTGGTG 58.988 43.478 0.00 0.00 32.32 4.17
241 242 4.263462 TGACTAGGCACAAGATGATTTGGT 60.263 41.667 0.00 0.00 32.32 3.67
242 243 4.264253 TGACTAGGCACAAGATGATTTGG 58.736 43.478 0.00 0.00 32.32 3.28
243 244 5.587443 TCATGACTAGGCACAAGATGATTTG 59.413 40.000 0.00 0.00 0.00 2.32
244 245 5.748402 TCATGACTAGGCACAAGATGATTT 58.252 37.500 0.00 0.00 0.00 2.17
245 246 5.363562 TCATGACTAGGCACAAGATGATT 57.636 39.130 0.00 0.00 0.00 2.57
246 247 5.563876 ATCATGACTAGGCACAAGATGAT 57.436 39.130 0.00 2.60 0.00 2.45
247 248 6.042437 ACATATCATGACTAGGCACAAGATGA 59.958 38.462 18.71 11.44 0.00 2.92
248 249 6.228995 ACATATCATGACTAGGCACAAGATG 58.771 40.000 16.39 14.60 0.00 2.90
249 250 6.269538 AGACATATCATGACTAGGCACAAGAT 59.730 38.462 0.00 7.85 33.67 2.40
250 251 5.600069 AGACATATCATGACTAGGCACAAGA 59.400 40.000 0.00 0.00 33.67 3.02
251 252 5.695363 CAGACATATCATGACTAGGCACAAG 59.305 44.000 0.00 0.00 33.67 3.16
252 253 5.363580 TCAGACATATCATGACTAGGCACAA 59.636 40.000 0.00 0.00 33.67 3.33
253 254 4.895297 TCAGACATATCATGACTAGGCACA 59.105 41.667 0.00 0.00 33.67 4.57
254 255 5.459536 TCAGACATATCATGACTAGGCAC 57.540 43.478 0.00 0.00 33.67 5.01
255 256 6.484364 TTTCAGACATATCATGACTAGGCA 57.516 37.500 0.00 0.00 33.67 4.75
256 257 8.310382 AGTATTTCAGACATATCATGACTAGGC 58.690 37.037 0.00 0.00 33.67 3.93
257 258 9.853555 GAGTATTTCAGACATATCATGACTAGG 57.146 37.037 0.00 0.00 33.67 3.02
262 263 8.996271 GCATTGAGTATTTCAGACATATCATGA 58.004 33.333 0.00 0.00 37.07 3.07
263 264 8.780249 TGCATTGAGTATTTCAGACATATCATG 58.220 33.333 0.00 0.00 37.07 3.07
264 265 8.781196 GTGCATTGAGTATTTCAGACATATCAT 58.219 33.333 0.00 0.00 37.07 2.45
265 266 7.989170 AGTGCATTGAGTATTTCAGACATATCA 59.011 33.333 0.00 0.00 37.07 2.15
266 267 8.375608 AGTGCATTGAGTATTTCAGACATATC 57.624 34.615 0.00 0.00 37.07 1.63
267 268 7.443575 GGAGTGCATTGAGTATTTCAGACATAT 59.556 37.037 0.00 0.00 37.07 1.78
268 269 6.763135 GGAGTGCATTGAGTATTTCAGACATA 59.237 38.462 0.00 0.00 37.07 2.29
269 270 5.587844 GGAGTGCATTGAGTATTTCAGACAT 59.412 40.000 0.00 0.00 37.07 3.06
270 271 4.937620 GGAGTGCATTGAGTATTTCAGACA 59.062 41.667 0.00 0.00 37.07 3.41
271 272 4.937620 TGGAGTGCATTGAGTATTTCAGAC 59.062 41.667 0.00 0.00 37.07 3.51
272 273 5.164620 TGGAGTGCATTGAGTATTTCAGA 57.835 39.130 0.00 0.00 37.07 3.27
273 274 5.817988 CATGGAGTGCATTGAGTATTTCAG 58.182 41.667 0.00 0.00 37.07 3.02
274 275 5.823209 CATGGAGTGCATTGAGTATTTCA 57.177 39.130 0.00 0.00 0.00 2.69
288 289 1.091771 GTGTGATCGGGCATGGAGTG 61.092 60.000 0.00 0.00 0.00 3.51
289 290 1.221840 GTGTGATCGGGCATGGAGT 59.778 57.895 0.00 0.00 0.00 3.85
290 291 1.884464 CGTGTGATCGGGCATGGAG 60.884 63.158 0.00 0.00 0.00 3.86
291 292 2.186644 CGTGTGATCGGGCATGGA 59.813 61.111 0.00 0.00 0.00 3.41
292 293 2.125147 ACGTGTGATCGGGCATGG 60.125 61.111 0.00 0.00 34.94 3.66
293 294 1.447663 TCACGTGTGATCGGGCATG 60.448 57.895 16.51 0.00 34.14 4.06
294 295 1.447838 GTCACGTGTGATCGGGCAT 60.448 57.895 16.51 0.00 42.18 4.40
295 296 2.048597 GTCACGTGTGATCGGGCA 60.049 61.111 16.51 0.00 42.18 5.36
327 328 3.966543 GATATGGGGTGGCCCGGG 61.967 72.222 19.09 19.09 46.66 5.73
329 330 4.329545 CGGATATGGGGTGGCCCG 62.330 72.222 0.00 0.00 46.66 6.13
330 331 4.660938 GCGGATATGGGGTGGCCC 62.661 72.222 0.00 0.00 44.51 5.80
331 332 4.660938 GGCGGATATGGGGTGGCC 62.661 72.222 0.00 0.00 0.00 5.36
336 340 1.584724 AATCTAGGGCGGATATGGGG 58.415 55.000 0.00 0.00 0.00 4.96
337 341 2.356125 CCAAATCTAGGGCGGATATGGG 60.356 54.545 0.00 0.00 0.00 4.00
339 343 2.991250 CCCAAATCTAGGGCGGATATG 58.009 52.381 0.00 0.00 39.96 1.78
348 352 5.251764 CCTCATATTCAGCCCAAATCTAGG 58.748 45.833 0.00 0.00 0.00 3.02
357 361 0.538287 GGCACCCTCATATTCAGCCC 60.538 60.000 0.00 0.00 34.71 5.19
363 367 0.469917 CTGACCGGCACCCTCATATT 59.530 55.000 0.00 0.00 0.00 1.28
383 388 2.431942 CGACCTCAAACGTCCGGG 60.432 66.667 0.00 0.00 0.00 5.73
387 392 0.318107 TCGAACCGACCTCAAACGTC 60.318 55.000 0.00 0.00 0.00 4.34
389 394 1.007336 CCTCGAACCGACCTCAAACG 61.007 60.000 0.00 0.00 0.00 3.60
392 397 2.654877 GCCTCGAACCGACCTCAA 59.345 61.111 0.00 0.00 0.00 3.02
420 425 4.575645 ACTGACCGGTCAAAAATAAACGAA 59.424 37.500 35.36 10.31 39.39 3.85
461 466 4.692475 AAACCCCTCGAACGCCCG 62.692 66.667 0.00 0.00 0.00 6.13
491 497 8.405531 GCAATTAATGAACTAAAGGCATCTACA 58.594 33.333 0.00 0.00 0.00 2.74
492 498 8.624776 AGCAATTAATGAACTAAAGGCATCTAC 58.375 33.333 0.00 0.00 0.00 2.59
505 511 9.599322 CGTGATAATTAGGAGCAATTAATGAAC 57.401 33.333 0.00 0.00 34.82 3.18
506 512 9.337396 ACGTGATAATTAGGAGCAATTAATGAA 57.663 29.630 0.00 0.00 34.82 2.57
507 513 8.773645 CACGTGATAATTAGGAGCAATTAATGA 58.226 33.333 10.90 0.00 34.82 2.57
508 514 8.773645 TCACGTGATAATTAGGAGCAATTAATG 58.226 33.333 15.76 0.00 34.82 1.90
509 515 8.774586 GTCACGTGATAATTAGGAGCAATTAAT 58.225 33.333 23.12 0.00 34.82 1.40
511 517 7.497595 AGTCACGTGATAATTAGGAGCAATTA 58.502 34.615 23.12 0.00 35.44 1.40
512 518 6.349300 AGTCACGTGATAATTAGGAGCAATT 58.651 36.000 23.12 0.00 32.91 2.32
513 519 5.918608 AGTCACGTGATAATTAGGAGCAAT 58.081 37.500 23.12 0.00 0.00 3.56
514 520 5.339008 AGTCACGTGATAATTAGGAGCAA 57.661 39.130 23.12 0.00 0.00 3.91
515 521 5.339008 AAGTCACGTGATAATTAGGAGCA 57.661 39.130 23.12 0.00 0.00 4.26
527 535 3.006003 TGCTTACCACATAAGTCACGTGA 59.994 43.478 15.76 15.76 42.19 4.35
531 539 4.680171 GGTTGCTTACCACATAAGTCAC 57.320 45.455 4.00 0.00 46.92 3.67
674 687 3.131396 GGTCTGGATGTAAATGTAGCGG 58.869 50.000 0.00 0.00 0.00 5.52
800 813 1.276705 AGGAGAGAAAACGAGGGAAGC 59.723 52.381 0.00 0.00 0.00 3.86
1192 1208 2.021068 CTCACGGGCGTCCTGATGAT 62.021 60.000 3.66 0.00 33.36 2.45
1309 1325 3.591023 TCGATGTTCCGCTAAATGACAA 58.409 40.909 0.00 0.00 0.00 3.18
1343 1359 7.083858 CCGAAATCAACATGCCGATAATAAAT 58.916 34.615 0.00 0.00 0.00 1.40
1350 1366 1.750193 ACCGAAATCAACATGCCGAT 58.250 45.000 0.00 0.00 0.00 4.18
1351 1367 2.093921 TCTACCGAAATCAACATGCCGA 60.094 45.455 0.00 0.00 0.00 5.54
1352 1368 2.276201 TCTACCGAAATCAACATGCCG 58.724 47.619 0.00 0.00 0.00 5.69
1379 1395 3.871006 TCAGTGAATGGTAATAAGCTGCG 59.129 43.478 0.00 0.00 0.00 5.18
1397 1413 7.552050 TCAATGTTTCCCCAAATTATTCAGT 57.448 32.000 0.00 0.00 0.00 3.41
1424 1440 2.564771 TCCAATGCGATGGAAGCTTAG 58.435 47.619 7.76 0.00 46.36 2.18
1463 1479 6.993786 TTACTCCAATTTGCAATCGATACA 57.006 33.333 0.00 0.00 0.00 2.29
1906 1929 8.621532 AACAGATATCTCTAACAAAGTGCAAA 57.378 30.769 1.03 0.00 0.00 3.68
1994 2017 5.222151 TGGGGAAGTAACCATCATAAACACA 60.222 40.000 0.00 0.00 0.00 3.72
1997 2020 5.751586 TCTGGGGAAGTAACCATCATAAAC 58.248 41.667 0.00 0.00 35.93 2.01
2056 2081 5.583061 TCAATGTGAAAAGTCGTGTACACTT 59.417 36.000 23.01 10.53 35.51 3.16
2126 2152 5.702209 CCCAAATTTCAATTTCCTTCACCAG 59.298 40.000 0.00 0.00 36.52 4.00
2142 2168 6.614906 TCATGGCTACCAATAATCCCAAATTT 59.385 34.615 0.00 0.00 36.95 1.82
2143 2169 6.142498 TCATGGCTACCAATAATCCCAAATT 58.858 36.000 0.00 0.00 36.95 1.82
2186 2212 3.354948 AGCTGCATTGAACCTATGACA 57.645 42.857 1.02 0.00 0.00 3.58
2440 2466 7.818997 ATGCATCATTCAGTGATCTTACATT 57.181 32.000 0.00 0.00 45.76 2.71
2762 2789 6.321945 AGGTGCATGCATTCAAATATTAGTGA 59.678 34.615 25.64 0.00 0.00 3.41
2798 2825 1.697982 GTGGAGTACCAGGTGAACCTT 59.302 52.381 0.76 0.00 46.09 3.50
2899 2926 1.952296 GCACCATAAGCTGAATCCCAG 59.048 52.381 0.00 0.00 45.67 4.45
3819 3854 8.696043 TGATTAGAAACTGGCATGCTATTAAT 57.304 30.769 18.92 11.53 0.00 1.40
3820 3855 8.570488 CATGATTAGAAACTGGCATGCTATTAA 58.430 33.333 18.92 7.55 0.00 1.40
3821 3856 7.720957 ACATGATTAGAAACTGGCATGCTATTA 59.279 33.333 18.92 1.02 37.28 0.98
3822 3857 6.548622 ACATGATTAGAAACTGGCATGCTATT 59.451 34.615 18.92 2.10 37.28 1.73
3823 3858 6.066690 ACATGATTAGAAACTGGCATGCTAT 58.933 36.000 18.92 0.00 37.28 2.97
4346 4389 5.433526 TCTACCGTTTAATGCATAAGCCTT 58.566 37.500 0.00 0.00 41.13 4.35
4962 5024 4.539870 CATCAACCTGCAAAAGTGTGTAG 58.460 43.478 0.00 0.00 0.00 2.74
5060 5122 9.897744 TTAAACAAGATCACAGTGAATTCATTC 57.102 29.630 12.12 0.00 37.31 2.67
5332 5394 6.223120 GCAAAATTTGGTAGAAATCACCAGT 58.777 36.000 7.89 0.00 46.44 4.00
5408 5471 1.892209 GTGAAACCATTGAGGGACGT 58.108 50.000 0.00 0.00 43.89 4.34
5433 5496 5.847111 ATGTACATACGCTAACTGGAAGA 57.153 39.130 6.56 0.00 37.43 2.87
5500 5563 2.821969 CCAGTTGGAGAAAATCACCTGG 59.178 50.000 0.00 0.00 37.39 4.45
5542 5605 2.282180 GAAGAACCAGGCGCCCAA 60.282 61.111 26.15 0.00 0.00 4.12
5570 5633 5.294306 ACACGTCTGCCAGAATATTTACATG 59.706 40.000 0.00 0.00 0.00 3.21
5571 5634 5.428253 ACACGTCTGCCAGAATATTTACAT 58.572 37.500 0.00 0.00 0.00 2.29
5676 5740 2.827322 TCAATGCTTGGGAAATGACCTG 59.173 45.455 0.00 0.00 0.00 4.00
5870 5940 4.913924 CACTTGCTGTTTTAGATGTTCTGC 59.086 41.667 0.00 0.00 0.00 4.26
5871 5941 4.913924 GCACTTGCTGTTTTAGATGTTCTG 59.086 41.667 0.00 0.00 38.21 3.02
5897 5988 2.380084 GTGTAGGCACTTCGATCCAA 57.620 50.000 0.00 0.00 42.13 3.53
5914 6005 1.520494 ACTGATGCAGCAGTCAAGTG 58.480 50.000 30.97 7.71 45.54 3.16
5935 6026 0.970937 CCAAGGGAGGCGACTGACTA 60.971 60.000 0.00 0.00 44.43 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.