Multiple sequence alignment - TraesCS2D01G294800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G294800 chr2D 100.000 2504 0 0 1 2504 377109971 377107468 0.000000e+00 4625
1 TraesCS2D01G294800 chr2D 88.782 731 50 7 1804 2504 70675073 70675801 0.000000e+00 867
2 TraesCS2D01G294800 chr2D 83.956 723 81 16 1815 2504 324863267 324863987 0.000000e+00 660
3 TraesCS2D01G294800 chr2D 93.521 355 23 0 2150 2504 509632169 509632523 1.710000e-146 529
4 TraesCS2D01G294800 chr2D 94.444 342 19 0 2163 2504 72321013 72321354 6.130000e-146 527
5 TraesCS2D01G294800 chr2D 86.316 380 29 5 1814 2170 72311390 72311769 2.330000e-105 392
6 TraesCS2D01G294800 chr2D 86.604 321 27 3 1814 2118 509631566 509631886 8.580000e-90 340
7 TraesCS2D01G294800 chr2D 86.154 130 16 2 1803 1931 58507631 58507759 3.360000e-29 139
8 TraesCS2D01G294800 chr2B 90.173 1333 86 28 463 1764 448579886 448578568 0.000000e+00 1694
9 TraesCS2D01G294800 chr2B 90.642 716 42 8 1814 2504 109021713 109022428 0.000000e+00 928
10 TraesCS2D01G294800 chr2A 91.749 909 55 12 860 1764 510990697 510989805 0.000000e+00 1245
11 TraesCS2D01G294800 chr2A 86.234 385 41 10 7 384 510992681 510992302 8.340000e-110 407
12 TraesCS2D01G294800 chr6D 89.888 712 49 10 1814 2502 200610995 200610284 0.000000e+00 894
13 TraesCS2D01G294800 chr5D 87.308 717 61 12 1813 2504 256483784 256484495 0.000000e+00 793
14 TraesCS2D01G294800 chr5D 84.701 719 80 14 1813 2504 438192514 438193229 0.000000e+00 691
15 TraesCS2D01G294800 chr3D 82.394 869 111 35 1 848 308788578 308787731 0.000000e+00 719
16 TraesCS2D01G294800 chr3D 80.868 622 76 26 2 589 308788720 308788108 1.370000e-122 449
17 TraesCS2D01G294800 chr3D 80.665 331 35 10 1810 2111 262912659 262912989 1.940000e-56 230
18 TraesCS2D01G294800 chr1D 85.294 714 67 14 1814 2504 403378327 403379025 0.000000e+00 702
19 TraesCS2D01G294800 chr1D 81.702 705 82 36 53 743 352938079 352938750 6.090000e-151 544
20 TraesCS2D01G294800 chr1D 82.580 597 79 20 36 617 352937659 352938245 1.030000e-138 503
21 TraesCS2D01G294800 chr3A 88.336 583 60 7 1928 2504 314628477 314629057 0.000000e+00 693
22 TraesCS2D01G294800 chr1B 84.615 728 73 19 1814 2504 288449015 288449740 0.000000e+00 688
23 TraesCS2D01G294800 chr4B 86.689 586 50 18 1813 2382 60555614 60556187 2.110000e-175 625
24 TraesCS2D01G294800 chr4B 83.034 725 85 17 1814 2504 114953018 114953738 7.610000e-175 623
25 TraesCS2D01G294800 chr4B 82.542 716 90 20 1820 2504 12254253 12254964 4.610000e-167 597
26 TraesCS2D01G294800 chr5B 82.238 715 99 14 1813 2504 565687616 565688325 2.140000e-165 592
27 TraesCS2D01G294800 chr5B 83.023 483 61 18 1 474 121538055 121537585 3.850000e-113 418
28 TraesCS2D01G294800 chr7D 83.041 684 79 26 101 766 462129540 462130204 9.980000e-164 586
29 TraesCS2D01G294800 chr7D 82.235 698 78 29 1 665 403802530 403803214 6.050000e-156 560
30 TraesCS2D01G294800 chr7D 75.952 420 64 25 439 848 36213439 36213831 5.500000e-42 182
31 TraesCS2D01G294800 chr4D 80.250 719 90 17 1810 2483 278425944 278426655 6.220000e-136 494
32 TraesCS2D01G294800 chr4D 78.553 788 131 28 38 802 396661472 396662244 3.740000e-133 484
33 TraesCS2D01G294800 chr4D 89.565 115 11 1 1816 1929 365415317 365415203 7.220000e-31 145
34 TraesCS2D01G294800 chr5A 84.823 481 60 12 1 474 641314405 641313931 2.920000e-129 472
35 TraesCS2D01G294800 chr5A 81.020 353 54 12 440 782 531393810 531394159 4.110000e-68 268
36 TraesCS2D01G294800 chr5A 75.862 580 87 44 117 665 641377542 641376985 1.920000e-61 246
37 TraesCS2D01G294800 chr6B 76.689 755 106 40 65 782 695847749 695847028 3.060000e-94 355
38 TraesCS2D01G294800 chr1A 83.946 299 29 10 1811 2092 298456098 298456394 4.110000e-68 268


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G294800 chr2D 377107468 377109971 2503 True 4625.0 4625 100.0000 1 2504 1 chr2D.!!$R1 2503
1 TraesCS2D01G294800 chr2D 70675073 70675801 728 False 867.0 867 88.7820 1804 2504 1 chr2D.!!$F2 700
2 TraesCS2D01G294800 chr2D 324863267 324863987 720 False 660.0 660 83.9560 1815 2504 1 chr2D.!!$F5 689
3 TraesCS2D01G294800 chr2D 509631566 509632523 957 False 434.5 529 90.0625 1814 2504 2 chr2D.!!$F6 690
4 TraesCS2D01G294800 chr2B 448578568 448579886 1318 True 1694.0 1694 90.1730 463 1764 1 chr2B.!!$R1 1301
5 TraesCS2D01G294800 chr2B 109021713 109022428 715 False 928.0 928 90.6420 1814 2504 1 chr2B.!!$F1 690
6 TraesCS2D01G294800 chr2A 510989805 510992681 2876 True 826.0 1245 88.9915 7 1764 2 chr2A.!!$R1 1757
7 TraesCS2D01G294800 chr6D 200610284 200610995 711 True 894.0 894 89.8880 1814 2502 1 chr6D.!!$R1 688
8 TraesCS2D01G294800 chr5D 256483784 256484495 711 False 793.0 793 87.3080 1813 2504 1 chr5D.!!$F1 691
9 TraesCS2D01G294800 chr5D 438192514 438193229 715 False 691.0 691 84.7010 1813 2504 1 chr5D.!!$F2 691
10 TraesCS2D01G294800 chr3D 308787731 308788720 989 True 584.0 719 81.6310 1 848 2 chr3D.!!$R1 847
11 TraesCS2D01G294800 chr1D 403378327 403379025 698 False 702.0 702 85.2940 1814 2504 1 chr1D.!!$F1 690
12 TraesCS2D01G294800 chr1D 352937659 352938750 1091 False 523.5 544 82.1410 36 743 2 chr1D.!!$F2 707
13 TraesCS2D01G294800 chr3A 314628477 314629057 580 False 693.0 693 88.3360 1928 2504 1 chr3A.!!$F1 576
14 TraesCS2D01G294800 chr1B 288449015 288449740 725 False 688.0 688 84.6150 1814 2504 1 chr1B.!!$F1 690
15 TraesCS2D01G294800 chr4B 60555614 60556187 573 False 625.0 625 86.6890 1813 2382 1 chr4B.!!$F2 569
16 TraesCS2D01G294800 chr4B 114953018 114953738 720 False 623.0 623 83.0340 1814 2504 1 chr4B.!!$F3 690
17 TraesCS2D01G294800 chr4B 12254253 12254964 711 False 597.0 597 82.5420 1820 2504 1 chr4B.!!$F1 684
18 TraesCS2D01G294800 chr5B 565687616 565688325 709 False 592.0 592 82.2380 1813 2504 1 chr5B.!!$F1 691
19 TraesCS2D01G294800 chr7D 462129540 462130204 664 False 586.0 586 83.0410 101 766 1 chr7D.!!$F3 665
20 TraesCS2D01G294800 chr7D 403802530 403803214 684 False 560.0 560 82.2350 1 665 1 chr7D.!!$F2 664
21 TraesCS2D01G294800 chr4D 278425944 278426655 711 False 494.0 494 80.2500 1810 2483 1 chr4D.!!$F1 673
22 TraesCS2D01G294800 chr4D 396661472 396662244 772 False 484.0 484 78.5530 38 802 1 chr4D.!!$F2 764
23 TraesCS2D01G294800 chr5A 641376985 641377542 557 True 246.0 246 75.8620 117 665 1 chr5A.!!$R2 548
24 TraesCS2D01G294800 chr6B 695847028 695847749 721 True 355.0 355 76.6890 65 782 1 chr6B.!!$R1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 2993 0.107017 AGCCTACCTTACGCCGTCTA 60.107 55.0 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 3802 0.106419 AGAGGAGAGGAAGTAGCCGG 60.106 60.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
693 1588 8.518151 TTCGTATACGTGACAAACATTTTCTA 57.482 30.769 23.67 0.00 40.80 2.10
924 2938 0.391263 ACGACTTTCCTCAATCGCCC 60.391 55.000 0.00 0.00 38.12 6.13
979 2993 0.107017 AGCCTACCTTACGCCGTCTA 60.107 55.000 0.00 0.00 0.00 2.59
1518 3532 4.201990 GCTCACTGATTGGTTCAATGGATC 60.202 45.833 0.00 0.00 33.90 3.36
1547 3562 7.899178 TTCGTTTTATGCTCTGTGAATAAGA 57.101 32.000 0.00 0.00 0.00 2.10
1569 3585 3.976468 CAATGTTGCTTTAACCATGCG 57.024 42.857 0.00 0.00 38.55 4.73
1613 3629 1.996292 TAGTCATGTGAAGCTGACGC 58.004 50.000 0.00 0.00 45.08 5.19
1647 3663 2.665649 TAGTTGCCTGGACACATACG 57.334 50.000 0.00 0.00 0.00 3.06
1652 3668 1.619332 TGCCTGGACACATACGTTGTA 59.381 47.619 0.00 0.00 36.57 2.41
1666 3682 6.812160 ACATACGTTGTAGATTCTCTTGGAAC 59.188 38.462 0.00 0.00 36.57 3.62
1677 3693 6.819146 AGATTCTCTTGGAACCGTTTAGATTC 59.181 38.462 0.00 0.00 36.70 2.52
1678 3694 5.740290 TCTCTTGGAACCGTTTAGATTCT 57.260 39.130 0.00 0.00 0.00 2.40
1688 3710 7.803659 GGAACCGTTTAGATTCTTTTCTTTCTG 59.196 37.037 0.00 0.00 0.00 3.02
1697 3719 8.564509 AGATTCTTTTCTTTCTGAAGATCCTG 57.435 34.615 0.00 0.00 41.35 3.86
1765 3787 4.424566 GGGCACGACCGTCGCTTA 62.425 66.667 20.67 0.00 45.12 3.09
1766 3788 3.177249 GGCACGACCGTCGCTTAC 61.177 66.667 20.67 7.58 45.12 2.34
1767 3789 3.177249 GCACGACCGTCGCTTACC 61.177 66.667 20.67 1.46 45.12 2.85
1768 3790 2.256158 CACGACCGTCGCTTACCA 59.744 61.111 20.67 0.00 45.12 3.25
1769 3791 1.153901 CACGACCGTCGCTTACCAT 60.154 57.895 20.67 0.00 45.12 3.55
1770 3792 1.153901 ACGACCGTCGCTTACCATG 60.154 57.895 20.67 0.00 45.12 3.66
1771 3793 1.876714 CGACCGTCGCTTACCATGG 60.877 63.158 11.19 11.19 31.14 3.66
1772 3794 1.217244 GACCGTCGCTTACCATGGT 59.783 57.895 23.55 23.55 0.00 3.55
1773 3795 0.390735 GACCGTCGCTTACCATGGTT 60.391 55.000 25.38 7.42 0.00 3.67
1774 3796 0.390735 ACCGTCGCTTACCATGGTTC 60.391 55.000 25.38 11.79 0.00 3.62
1775 3797 0.390603 CCGTCGCTTACCATGGTTCA 60.391 55.000 25.38 9.60 0.00 3.18
1776 3798 1.651987 CGTCGCTTACCATGGTTCAT 58.348 50.000 25.38 0.00 0.00 2.57
1777 3799 1.593006 CGTCGCTTACCATGGTTCATC 59.407 52.381 25.38 9.22 0.00 2.92
1778 3800 1.940613 GTCGCTTACCATGGTTCATCC 59.059 52.381 25.38 6.67 0.00 3.51
1779 3801 1.134220 TCGCTTACCATGGTTCATCCC 60.134 52.381 25.38 5.23 34.77 3.85
1780 3802 1.692411 GCTTACCATGGTTCATCCCC 58.308 55.000 25.38 1.23 34.77 4.81
1781 3803 1.754201 GCTTACCATGGTTCATCCCCC 60.754 57.143 25.38 0.00 34.77 5.40
1782 3804 0.548989 TTACCATGGTTCATCCCCCG 59.451 55.000 25.38 0.00 34.77 5.73
1783 3805 1.349542 TACCATGGTTCATCCCCCGG 61.350 60.000 25.38 0.00 34.77 5.73
1784 3806 2.519302 CATGGTTCATCCCCCGGC 60.519 66.667 0.00 0.00 34.77 6.13
1785 3807 2.696125 ATGGTTCATCCCCCGGCT 60.696 61.111 0.00 0.00 34.77 5.52
1786 3808 1.385347 ATGGTTCATCCCCCGGCTA 60.385 57.895 0.00 0.00 34.77 3.93
1787 3809 1.705997 ATGGTTCATCCCCCGGCTAC 61.706 60.000 0.00 0.00 34.77 3.58
1788 3810 2.070650 GGTTCATCCCCCGGCTACT 61.071 63.158 0.00 0.00 0.00 2.57
1789 3811 1.632965 GGTTCATCCCCCGGCTACTT 61.633 60.000 0.00 0.00 0.00 2.24
1790 3812 0.179054 GTTCATCCCCCGGCTACTTC 60.179 60.000 0.00 0.00 0.00 3.01
1791 3813 1.342672 TTCATCCCCCGGCTACTTCC 61.343 60.000 0.00 0.00 0.00 3.46
1792 3814 1.766461 CATCCCCCGGCTACTTCCT 60.766 63.158 0.00 0.00 0.00 3.36
1793 3815 1.459730 ATCCCCCGGCTACTTCCTC 60.460 63.158 0.00 0.00 0.00 3.71
1794 3816 1.962570 ATCCCCCGGCTACTTCCTCT 61.963 60.000 0.00 0.00 0.00 3.69
1795 3817 2.134933 CCCCCGGCTACTTCCTCTC 61.135 68.421 0.00 0.00 0.00 3.20
1796 3818 2.134933 CCCCGGCTACTTCCTCTCC 61.135 68.421 0.00 0.00 0.00 3.71
1797 3819 1.075896 CCCGGCTACTTCCTCTCCT 60.076 63.158 0.00 0.00 0.00 3.69
1798 3820 1.110518 CCCGGCTACTTCCTCTCCTC 61.111 65.000 0.00 0.00 0.00 3.71
1799 3821 0.106419 CCGGCTACTTCCTCTCCTCT 60.106 60.000 0.00 0.00 0.00 3.69
1800 3822 1.314730 CGGCTACTTCCTCTCCTCTC 58.685 60.000 0.00 0.00 0.00 3.20
1801 3823 1.314730 GGCTACTTCCTCTCCTCTCG 58.685 60.000 0.00 0.00 0.00 4.04
1802 3824 0.666374 GCTACTTCCTCTCCTCTCGC 59.334 60.000 0.00 0.00 0.00 5.03
1803 3825 2.019668 GCTACTTCCTCTCCTCTCGCA 61.020 57.143 0.00 0.00 0.00 5.10
1804 3826 2.370349 CTACTTCCTCTCCTCTCGCAA 58.630 52.381 0.00 0.00 0.00 4.85
1805 3827 1.633774 ACTTCCTCTCCTCTCGCAAA 58.366 50.000 0.00 0.00 0.00 3.68
1806 3828 1.971357 ACTTCCTCTCCTCTCGCAAAA 59.029 47.619 0.00 0.00 0.00 2.44
1807 3829 2.028567 ACTTCCTCTCCTCTCGCAAAAG 60.029 50.000 0.00 0.00 0.00 2.27
1808 3830 1.924731 TCCTCTCCTCTCGCAAAAGA 58.075 50.000 0.00 0.00 0.00 2.52
1809 3831 2.248248 TCCTCTCCTCTCGCAAAAGAA 58.752 47.619 0.00 0.00 0.00 2.52
1810 3832 2.834549 TCCTCTCCTCTCGCAAAAGAAT 59.165 45.455 0.00 0.00 0.00 2.40
1811 3833 4.023980 TCCTCTCCTCTCGCAAAAGAATA 58.976 43.478 0.00 0.00 0.00 1.75
1854 3879 1.227383 GTGGCATCTAGGGGGTTGG 59.773 63.158 0.00 0.00 0.00 3.77
1887 3912 2.847234 TGGCACGGAGACAACCCT 60.847 61.111 0.00 0.00 0.00 4.34
2196 4527 5.186797 TCCTCTTTCTCATCCTTCTTCTGTC 59.813 44.000 0.00 0.00 0.00 3.51
2252 4585 0.528684 GGCGACTAGATCCACACTGC 60.529 60.000 0.00 0.00 0.00 4.40
2316 4651 3.002791 CACCAACATACGCAAGATCTGT 58.997 45.455 0.00 0.00 43.62 3.41
2383 4718 1.546476 CGAGTAGTTGCTCCAGAAGGT 59.454 52.381 0.00 0.00 35.89 3.50
2460 4802 4.655649 GGGAGGGAGAAAATTAATTGCCAT 59.344 41.667 0.39 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 171 6.456447 AAATGTTGATCAAGCATTTGAACG 57.544 33.333 28.58 0.00 45.82 3.95
287 880 7.330208 AGCATTTGAAGAATGTTAAATGTCTGC 59.670 33.333 0.00 0.00 40.70 4.26
924 2938 1.497161 AGTAGGATTCGTGAAGGGGG 58.503 55.000 0.00 0.00 0.00 5.40
929 2943 3.242969 CGATCGGAAGTAGGATTCGTGAA 60.243 47.826 7.38 0.00 0.00 3.18
932 2946 1.001597 GCGATCGGAAGTAGGATTCGT 60.002 52.381 18.30 0.00 0.00 3.85
959 2973 1.065436 GACGGCGTAAGGTAGGCTC 59.935 63.158 14.74 0.00 39.38 4.70
979 2993 2.113433 CCACGTCGAGATCGGGAGT 61.113 63.158 0.00 0.00 40.29 3.85
1518 3532 6.110543 TCACAGAGCATAAAACGAATGATG 57.889 37.500 0.00 0.00 0.00 3.07
1613 3629 4.954442 GGCAACTAACTACGCTAACAAAG 58.046 43.478 0.00 0.00 0.00 2.77
1666 3682 8.774586 TCTTCAGAAAGAAAAGAATCTAAACGG 58.225 33.333 0.00 0.00 38.58 4.44
1677 3693 4.157472 GGCCAGGATCTTCAGAAAGAAAAG 59.843 45.833 0.00 0.00 44.49 2.27
1678 3694 4.082125 GGCCAGGATCTTCAGAAAGAAAA 58.918 43.478 0.00 0.00 44.49 2.29
1688 3710 1.821332 CAAGCCGGCCAGGATCTTC 60.821 63.158 26.15 0.00 45.00 2.87
1694 3716 1.595093 CCTTTAACAAGCCGGCCAGG 61.595 60.000 26.15 15.84 44.97 4.45
1697 3719 1.183030 AACCCTTTAACAAGCCGGCC 61.183 55.000 26.15 5.07 0.00 6.13
1764 3786 1.349542 CCGGGGGATGAACCATGGTA 61.350 60.000 20.12 3.19 41.20 3.25
1765 3787 2.689691 CCGGGGGATGAACCATGGT 61.690 63.158 13.00 13.00 41.20 3.55
1766 3788 2.195683 CCGGGGGATGAACCATGG 59.804 66.667 11.19 11.19 41.20 3.66
1767 3789 1.705002 TAGCCGGGGGATGAACCATG 61.705 60.000 2.18 0.00 41.20 3.66
1768 3790 1.385347 TAGCCGGGGGATGAACCAT 60.385 57.895 2.18 0.00 41.20 3.55
1769 3791 2.041430 TAGCCGGGGGATGAACCA 59.959 61.111 2.18 0.00 41.20 3.67
1770 3792 1.632965 AAGTAGCCGGGGGATGAACC 61.633 60.000 2.18 0.00 38.08 3.62
1771 3793 0.179054 GAAGTAGCCGGGGGATGAAC 60.179 60.000 2.18 0.00 0.00 3.18
1772 3794 1.342672 GGAAGTAGCCGGGGGATGAA 61.343 60.000 2.18 0.00 0.00 2.57
1773 3795 1.764854 GGAAGTAGCCGGGGGATGA 60.765 63.158 2.18 0.00 0.00 2.92
1774 3796 1.759459 GAGGAAGTAGCCGGGGGATG 61.759 65.000 2.18 0.00 0.00 3.51
1775 3797 1.459730 GAGGAAGTAGCCGGGGGAT 60.460 63.158 2.18 0.00 0.00 3.85
1776 3798 2.042230 GAGGAAGTAGCCGGGGGA 60.042 66.667 2.18 0.00 0.00 4.81
1777 3799 2.041819 AGAGGAAGTAGCCGGGGG 60.042 66.667 2.18 0.00 0.00 5.40
1778 3800 2.134933 GGAGAGGAAGTAGCCGGGG 61.135 68.421 2.18 0.00 0.00 5.73
1779 3801 1.075896 AGGAGAGGAAGTAGCCGGG 60.076 63.158 2.18 0.00 0.00 5.73
1780 3802 0.106419 AGAGGAGAGGAAGTAGCCGG 60.106 60.000 0.00 0.00 0.00 6.13
1781 3803 1.314730 GAGAGGAGAGGAAGTAGCCG 58.685 60.000 0.00 0.00 0.00 5.52
1782 3804 1.314730 CGAGAGGAGAGGAAGTAGCC 58.685 60.000 0.00 0.00 0.00 3.93
1783 3805 0.666374 GCGAGAGGAGAGGAAGTAGC 59.334 60.000 0.00 0.00 0.00 3.58
1784 3806 2.045561 TGCGAGAGGAGAGGAAGTAG 57.954 55.000 0.00 0.00 0.00 2.57
1785 3807 2.509166 TTGCGAGAGGAGAGGAAGTA 57.491 50.000 0.00 0.00 0.00 2.24
1786 3808 1.633774 TTTGCGAGAGGAGAGGAAGT 58.366 50.000 0.00 0.00 0.00 3.01
1787 3809 2.232452 TCTTTTGCGAGAGGAGAGGAAG 59.768 50.000 0.00 0.00 0.00 3.46
1788 3810 2.248248 TCTTTTGCGAGAGGAGAGGAA 58.752 47.619 0.00 0.00 0.00 3.36
1789 3811 1.924731 TCTTTTGCGAGAGGAGAGGA 58.075 50.000 0.00 0.00 0.00 3.71
1790 3812 2.751166 TTCTTTTGCGAGAGGAGAGG 57.249 50.000 0.00 0.00 0.00 3.69
1791 3813 4.749099 CCATATTCTTTTGCGAGAGGAGAG 59.251 45.833 0.00 0.00 0.00 3.20
1792 3814 4.405680 TCCATATTCTTTTGCGAGAGGAGA 59.594 41.667 0.00 0.00 0.00 3.71
1793 3815 4.509600 GTCCATATTCTTTTGCGAGAGGAG 59.490 45.833 0.00 0.00 0.00 3.69
1794 3816 4.442706 GTCCATATTCTTTTGCGAGAGGA 58.557 43.478 0.00 0.00 0.00 3.71
1795 3817 3.246226 CGTCCATATTCTTTTGCGAGAGG 59.754 47.826 0.00 0.00 0.00 3.69
1796 3818 4.026475 GTCGTCCATATTCTTTTGCGAGAG 60.026 45.833 0.00 0.00 0.00 3.20
1797 3819 3.863424 GTCGTCCATATTCTTTTGCGAGA 59.137 43.478 0.00 0.00 0.00 4.04
1798 3820 3.301835 CGTCGTCCATATTCTTTTGCGAG 60.302 47.826 0.00 0.00 0.00 5.03
1799 3821 2.601314 CGTCGTCCATATTCTTTTGCGA 59.399 45.455 0.00 0.00 0.00 5.10
1800 3822 2.601314 TCGTCGTCCATATTCTTTTGCG 59.399 45.455 0.00 0.00 0.00 4.85
1801 3823 4.795970 ATCGTCGTCCATATTCTTTTGC 57.204 40.909 0.00 0.00 0.00 3.68
1802 3824 7.337718 CAGTTATCGTCGTCCATATTCTTTTG 58.662 38.462 0.00 0.00 0.00 2.44
1803 3825 6.018994 GCAGTTATCGTCGTCCATATTCTTTT 60.019 38.462 0.00 0.00 0.00 2.27
1804 3826 5.462398 GCAGTTATCGTCGTCCATATTCTTT 59.538 40.000 0.00 0.00 0.00 2.52
1805 3827 4.982916 GCAGTTATCGTCGTCCATATTCTT 59.017 41.667 0.00 0.00 0.00 2.52
1806 3828 4.547532 GCAGTTATCGTCGTCCATATTCT 58.452 43.478 0.00 0.00 0.00 2.40
1807 3829 3.673809 GGCAGTTATCGTCGTCCATATTC 59.326 47.826 0.00 0.00 0.00 1.75
1808 3830 3.069016 TGGCAGTTATCGTCGTCCATATT 59.931 43.478 0.00 0.00 0.00 1.28
1809 3831 2.626266 TGGCAGTTATCGTCGTCCATAT 59.374 45.455 0.00 0.00 0.00 1.78
1810 3832 2.025898 TGGCAGTTATCGTCGTCCATA 58.974 47.619 0.00 0.00 0.00 2.74
1811 3833 0.821517 TGGCAGTTATCGTCGTCCAT 59.178 50.000 0.00 0.00 0.00 3.41
2118 4175 1.136110 GCAACTAGAGAGTGAGGAGGC 59.864 57.143 0.00 0.00 35.52 4.70
2121 4193 2.229062 CGTTGCAACTAGAGAGTGAGGA 59.771 50.000 26.09 0.00 35.52 3.71
2264 4598 5.045942 GGGGAATAAACACAAATCCATGGTT 60.046 40.000 12.58 0.00 31.63 3.67
2343 4678 2.026905 GCAACAACCCAACCCAGAAGA 61.027 52.381 0.00 0.00 0.00 2.87
2383 4718 7.343357 CCCCTAATTTAGTGAATCCTACACAA 58.657 38.462 0.00 0.00 40.25 3.33
2460 4802 3.371102 GCAACTAGCGTCAGATATGGA 57.629 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.