Multiple sequence alignment - TraesCS2D01G293200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G293200 chr2D 100.000 5549 0 0 1 5549 375591753 375597301 0.000000e+00 10248.0
1 TraesCS2D01G293200 chr2A 91.761 4940 211 71 425 5257 508029815 508034665 0.000000e+00 6687.0
2 TraesCS2D01G293200 chr2A 91.254 343 16 11 85 416 508023267 508023606 6.550000e-124 455.0
3 TraesCS2D01G293200 chr2B 93.355 3642 139 41 1694 5280 446081027 446084620 0.000000e+00 5289.0
4 TraesCS2D01G293200 chr2B 91.702 1663 69 21 85 1698 446079358 446081000 0.000000e+00 2242.0
5 TraesCS2D01G293200 chr5A 79.890 910 130 26 2412 3294 533974432 533973549 7.900000e-173 617.0
6 TraesCS2D01G293200 chr5A 78.989 890 173 7 2152 3031 687150104 687150989 3.700000e-166 595.0
7 TraesCS2D01G293200 chr5A 81.209 761 119 15 3795 4554 533967394 533966657 4.790000e-165 592.0
8 TraesCS2D01G293200 chr5A 84.713 471 64 6 3795 4261 535117341 535116875 1.090000e-126 464.0
9 TraesCS2D01G293200 chr4D 79.632 869 161 11 2174 3031 502709638 502710501 1.320000e-170 610.0
10 TraesCS2D01G293200 chr4D 75.492 559 109 24 2171 2718 40396653 40397194 1.190000e-61 248.0
11 TraesCS2D01G293200 chr5B 79.026 739 117 23 3826 4554 506698303 506697593 6.510000e-129 472.0
12 TraesCS2D01G293200 chr5B 79.021 715 123 21 3795 4504 507870786 507870094 1.090000e-126 464.0
13 TraesCS2D01G293200 chr5B 83.534 249 41 0 3818 4066 507869704 507869456 3.340000e-57 233.0
14 TraesCS2D01G293200 chr4B 76.449 552 104 22 2171 2712 58926095 58926630 5.480000e-70 276.0
15 TraesCS2D01G293200 chr4A 75.943 557 110 17 2171 2718 559495989 559495448 1.190000e-66 265.0
16 TraesCS2D01G293200 chr5D 82.731 249 43 0 3818 4066 421508347 421508099 7.240000e-54 222.0
17 TraesCS2D01G293200 chr7A 95.556 45 1 1 5256 5300 143184202 143184245 2.770000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G293200 chr2D 375591753 375597301 5548 False 10248.0 10248 100.0000 1 5549 1 chr2D.!!$F1 5548
1 TraesCS2D01G293200 chr2A 508029815 508034665 4850 False 6687.0 6687 91.7610 425 5257 1 chr2A.!!$F2 4832
2 TraesCS2D01G293200 chr2B 446079358 446084620 5262 False 3765.5 5289 92.5285 85 5280 2 chr2B.!!$F1 5195
3 TraesCS2D01G293200 chr5A 533973549 533974432 883 True 617.0 617 79.8900 2412 3294 1 chr5A.!!$R2 882
4 TraesCS2D01G293200 chr5A 687150104 687150989 885 False 595.0 595 78.9890 2152 3031 1 chr5A.!!$F1 879
5 TraesCS2D01G293200 chr5A 533966657 533967394 737 True 592.0 592 81.2090 3795 4554 1 chr5A.!!$R1 759
6 TraesCS2D01G293200 chr4D 502709638 502710501 863 False 610.0 610 79.6320 2174 3031 1 chr4D.!!$F2 857
7 TraesCS2D01G293200 chr4D 40396653 40397194 541 False 248.0 248 75.4920 2171 2718 1 chr4D.!!$F1 547
8 TraesCS2D01G293200 chr5B 506697593 506698303 710 True 472.0 472 79.0260 3826 4554 1 chr5B.!!$R1 728
9 TraesCS2D01G293200 chr5B 507869456 507870786 1330 True 348.5 464 81.2775 3795 4504 2 chr5B.!!$R2 709
10 TraesCS2D01G293200 chr4B 58926095 58926630 535 False 276.0 276 76.4490 2171 2712 1 chr4B.!!$F1 541
11 TraesCS2D01G293200 chr4A 559495448 559495989 541 True 265.0 265 75.9430 2171 2718 1 chr4A.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.248296 GTCCGACGAGCTCAGCTTAG 60.248 60.000 15.40 0.2 39.88 2.18 F
1194 1243 0.255318 TCTACGAGACCCACCTCCTC 59.745 60.000 0.00 0.0 0.00 3.71 F
1411 1462 1.135489 TGTGTAGTAGCACTAGCACGC 60.135 52.381 15.32 0.0 45.49 5.34 F
2027 2137 0.451783 GGCGAACTTGCAACCCTATG 59.548 55.000 0.00 0.0 36.28 2.23 F
2941 3068 0.518636 CAAGACGTTCTACGACCCGA 59.481 55.000 6.19 0.0 46.05 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1621 1673 0.032952 GTGACCGTAGCCAGTTCACA 59.967 55.0 0.00 0.00 0.00 3.58 R
2008 2118 0.451783 CATAGGGTTGCAAGTTCGCC 59.548 55.0 0.00 0.00 0.00 5.54 R
3373 3554 0.320771 CTCAAGGCAAGGCAGTACGT 60.321 55.0 0.00 0.00 0.00 3.57 R
3374 3555 0.320771 ACTCAAGGCAAGGCAGTACG 60.321 55.0 0.00 0.00 0.00 3.67 R
4742 5217 0.039256 CTTTCCACCAATGTGCACGG 60.039 55.0 13.13 10.09 41.35 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.580916 ACAGAGTCCGACGAGCTC 58.419 61.111 2.73 2.73 0.00 4.09
19 20 1.302383 ACAGAGTCCGACGAGCTCAG 61.302 60.000 15.40 9.21 0.00 3.35
20 21 2.101380 GAGTCCGACGAGCTCAGC 59.899 66.667 15.40 3.50 0.00 4.26
22 23 1.928706 GAGTCCGACGAGCTCAGCTT 61.929 60.000 15.40 0.00 39.88 3.74
23 24 0.677098 AGTCCGACGAGCTCAGCTTA 60.677 55.000 15.40 0.00 39.88 3.09
24 25 0.248296 GTCCGACGAGCTCAGCTTAG 60.248 60.000 15.40 0.20 39.88 2.18
25 26 0.392595 TCCGACGAGCTCAGCTTAGA 60.393 55.000 15.40 0.00 39.88 2.10
26 27 0.665835 CCGACGAGCTCAGCTTAGAT 59.334 55.000 15.40 0.00 39.88 1.98
27 28 1.066303 CCGACGAGCTCAGCTTAGATT 59.934 52.381 15.40 0.00 39.88 2.40
28 29 2.290916 CCGACGAGCTCAGCTTAGATTA 59.709 50.000 15.40 0.00 39.88 1.75
29 30 3.550561 CGACGAGCTCAGCTTAGATTAG 58.449 50.000 15.40 0.00 39.88 1.73
30 31 3.248841 CGACGAGCTCAGCTTAGATTAGA 59.751 47.826 15.40 0.00 39.88 2.10
31 32 4.083537 CGACGAGCTCAGCTTAGATTAGAT 60.084 45.833 15.40 0.00 39.88 1.98
32 33 5.561919 CGACGAGCTCAGCTTAGATTAGATT 60.562 44.000 15.40 0.00 39.88 2.40
33 34 6.155475 ACGAGCTCAGCTTAGATTAGATTT 57.845 37.500 15.40 0.00 39.88 2.17
34 35 6.578023 ACGAGCTCAGCTTAGATTAGATTTT 58.422 36.000 15.40 0.00 39.88 1.82
35 36 7.717568 ACGAGCTCAGCTTAGATTAGATTTTA 58.282 34.615 15.40 0.00 39.88 1.52
36 37 7.650104 ACGAGCTCAGCTTAGATTAGATTTTAC 59.350 37.037 15.40 0.00 39.88 2.01
37 38 7.149047 CGAGCTCAGCTTAGATTAGATTTTACG 60.149 40.741 15.40 0.00 39.88 3.18
38 39 7.493367 AGCTCAGCTTAGATTAGATTTTACGT 58.507 34.615 0.00 0.00 33.89 3.57
39 40 7.982354 AGCTCAGCTTAGATTAGATTTTACGTT 59.018 33.333 0.00 0.00 33.89 3.99
40 41 8.058915 GCTCAGCTTAGATTAGATTTTACGTTG 58.941 37.037 0.00 0.00 0.00 4.10
41 42 7.906160 TCAGCTTAGATTAGATTTTACGTTGC 58.094 34.615 0.00 0.00 0.00 4.17
42 43 7.547722 TCAGCTTAGATTAGATTTTACGTTGCA 59.452 33.333 0.00 0.00 0.00 4.08
43 44 8.338259 CAGCTTAGATTAGATTTTACGTTGCAT 58.662 33.333 0.00 0.00 0.00 3.96
44 45 9.542462 AGCTTAGATTAGATTTTACGTTGCATA 57.458 29.630 0.00 0.00 0.00 3.14
88 89 9.971922 GATTTTTAATTGAGGTATCCAATGAGG 57.028 33.333 0.00 0.00 34.75 3.86
89 90 7.896383 TTTTAATTGAGGTATCCAATGAGGG 57.104 36.000 0.00 0.00 38.24 4.30
90 91 6.590656 TTAATTGAGGTATCCAATGAGGGT 57.409 37.500 0.00 0.00 38.24 4.34
91 92 5.472301 AATTGAGGTATCCAATGAGGGTT 57.528 39.130 0.00 0.00 38.24 4.11
92 93 3.931907 TGAGGTATCCAATGAGGGTTG 57.068 47.619 0.00 0.00 38.24 3.77
102 103 3.929094 CAATGAGGGTTGGATTTTGGTG 58.071 45.455 0.00 0.00 0.00 4.17
103 104 2.765689 TGAGGGTTGGATTTTGGTGT 57.234 45.000 0.00 0.00 0.00 4.16
104 105 3.885976 TGAGGGTTGGATTTTGGTGTA 57.114 42.857 0.00 0.00 0.00 2.90
105 106 4.396357 TGAGGGTTGGATTTTGGTGTAT 57.604 40.909 0.00 0.00 0.00 2.29
106 107 4.340617 TGAGGGTTGGATTTTGGTGTATC 58.659 43.478 0.00 0.00 0.00 2.24
121 122 0.676184 GTATCCGGCTGATGCTCTCA 59.324 55.000 0.00 0.00 39.59 3.27
132 133 2.945278 GATGCTCTCATCGATCTGGAC 58.055 52.381 0.00 0.00 39.63 4.02
247 248 3.053896 GCCACTTGGTACGGGTGC 61.054 66.667 0.00 0.00 37.57 5.01
306 307 2.320587 GCGCGAGGGCAATAGATGG 61.321 63.158 12.10 0.00 39.92 3.51
307 308 1.669115 CGCGAGGGCAATAGATGGG 60.669 63.158 0.00 0.00 39.92 4.00
308 309 1.302832 GCGAGGGCAATAGATGGGG 60.303 63.158 0.00 0.00 39.62 4.96
309 310 1.376466 CGAGGGCAATAGATGGGGG 59.624 63.158 0.00 0.00 0.00 5.40
310 311 1.418908 CGAGGGCAATAGATGGGGGT 61.419 60.000 0.00 0.00 0.00 4.95
354 355 4.435436 CGCGAGCAGTGGTAGCCA 62.435 66.667 19.67 0.00 0.00 4.75
355 356 2.510238 GCGAGCAGTGGTAGCCAG 60.510 66.667 15.57 0.00 32.34 4.85
356 357 2.185350 CGAGCAGTGGTAGCCAGG 59.815 66.667 0.00 0.00 32.34 4.45
357 358 2.351244 CGAGCAGTGGTAGCCAGGA 61.351 63.158 0.00 0.00 32.34 3.86
358 359 1.219393 GAGCAGTGGTAGCCAGGAC 59.781 63.158 0.00 0.00 32.34 3.85
396 423 2.314647 GCAAGTGGCGCGTGAAGTA 61.315 57.895 18.05 0.00 0.00 2.24
397 424 1.781555 CAAGTGGCGCGTGAAGTAG 59.218 57.895 8.43 0.00 0.00 2.57
425 452 2.768492 GGTGTATCCGACGGAGCGT 61.768 63.158 22.99 8.28 45.10 5.07
426 453 1.585521 GTGTATCCGACGGAGCGTG 60.586 63.158 22.99 0.00 41.37 5.34
534 562 1.375908 GTGCCTCGGATGACAAGCA 60.376 57.895 0.00 0.00 0.00 3.91
535 563 1.375908 TGCCTCGGATGACAAGCAC 60.376 57.895 0.00 0.00 0.00 4.40
538 566 1.737735 CTCGGATGACAAGCACGCA 60.738 57.895 0.00 0.00 0.00 5.24
687 715 2.753029 GAGCAACCAGACCCAGCT 59.247 61.111 0.00 0.00 38.43 4.24
871 907 9.079239 TGGTTATATCATCCAATAATACCCCAT 57.921 33.333 0.00 0.00 0.00 4.00
887 923 4.265073 ACCCCATGAAAAATCTCTCTTCG 58.735 43.478 0.00 0.00 0.00 3.79
1092 1132 1.810606 CTCTGTGCCCGAGTGTGAGT 61.811 60.000 0.00 0.00 0.00 3.41
1101 1141 0.514255 CGAGTGTGAGTGCAATGGTG 59.486 55.000 0.00 0.00 0.00 4.17
1107 1147 1.956477 GTGAGTGCAATGGTGGTTCTT 59.044 47.619 0.00 0.00 0.00 2.52
1194 1243 0.255318 TCTACGAGACCCACCTCCTC 59.745 60.000 0.00 0.00 0.00 3.71
1411 1462 1.135489 TGTGTAGTAGCACTAGCACGC 60.135 52.381 15.32 0.00 45.49 5.34
1499 1550 3.517296 TGGGCCATACAAGAAACTTCA 57.483 42.857 0.00 0.00 0.00 3.02
1505 1557 6.321181 GGGCCATACAAGAAACTTCATAATCA 59.679 38.462 4.39 0.00 0.00 2.57
1621 1673 4.195416 GCATGCTTTAGGACTAGCTTTCT 58.805 43.478 11.37 0.00 38.22 2.52
1630 1682 3.007398 AGGACTAGCTTTCTGTGAACTGG 59.993 47.826 0.00 0.00 0.00 4.00
1680 1736 2.167487 AGTGAGCTAGAGTTGCTTAGCC 59.833 50.000 0.29 0.00 41.30 3.93
1756 1851 5.880887 AGGTTTATAACTGGCTCTAACTTGC 59.119 40.000 0.00 0.00 0.00 4.01
1758 1853 3.887621 ATAACTGGCTCTAACTTGCGA 57.112 42.857 0.00 0.00 0.00 5.10
1759 1854 2.543777 AACTGGCTCTAACTTGCGAA 57.456 45.000 0.00 0.00 0.00 4.70
1789 1889 1.966762 CCATGTTGGTGGTTGCTCC 59.033 57.895 0.00 0.00 34.46 4.70
1790 1890 1.580942 CATGTTGGTGGTTGCTCCG 59.419 57.895 0.00 0.00 39.52 4.63
1791 1891 2.268076 ATGTTGGTGGTTGCTCCGC 61.268 57.895 3.99 3.99 45.27 5.54
1792 1892 2.594592 GTTGGTGGTTGCTCCGCT 60.595 61.111 10.74 0.00 45.32 5.52
1793 1893 2.281484 TTGGTGGTTGCTCCGCTC 60.281 61.111 10.74 3.90 45.32 5.03
1794 1894 2.818169 TTGGTGGTTGCTCCGCTCT 61.818 57.895 10.74 0.00 45.32 4.09
1795 1895 2.435059 GGTGGTTGCTCCGCTCTC 60.435 66.667 10.74 0.00 45.32 3.20
1893 1993 3.306973 TCGCGTCTTCAATTTGATGCTAG 59.693 43.478 5.77 0.00 41.52 3.42
1900 2000 5.526479 TCTTCAATTTGATGCTAGCTGCTAG 59.474 40.000 28.07 28.07 43.37 3.42
2010 2120 4.891727 GCATGCTGCATGGCTGGC 62.892 66.667 35.63 21.88 44.26 4.85
2024 2134 1.898574 CTGGCGAACTTGCAACCCT 60.899 57.895 0.00 0.00 36.28 4.34
2027 2137 0.451783 GGCGAACTTGCAACCCTATG 59.548 55.000 0.00 0.00 36.28 2.23
2039 2149 3.699038 GCAACCCTATGCAGAAACCATTA 59.301 43.478 0.00 0.00 45.70 1.90
2043 2153 7.255942 GCAACCCTATGCAGAAACCATTATAAT 60.256 37.037 0.00 0.00 45.70 1.28
2087 2198 7.044181 GGTCATTAACTTCACTGAGATCATCA 58.956 38.462 0.00 0.00 36.21 3.07
2088 2199 7.714377 GGTCATTAACTTCACTGAGATCATCAT 59.286 37.037 0.00 0.00 37.28 2.45
2089 2200 8.763356 GTCATTAACTTCACTGAGATCATCATC 58.237 37.037 0.00 0.00 37.28 2.92
2091 2202 9.978044 CATTAACTTCACTGAGATCATCATCTA 57.022 33.333 0.00 0.00 39.71 1.98
2094 2205 8.890124 AACTTCACTGAGATCATCATCTAATG 57.110 34.615 0.00 0.00 39.71 1.90
2095 2206 8.247666 ACTTCACTGAGATCATCATCTAATGA 57.752 34.615 0.00 0.00 39.71 2.57
2096 2207 8.361889 ACTTCACTGAGATCATCATCTAATGAG 58.638 37.037 0.00 0.00 43.53 2.90
2097 2208 7.229581 TCACTGAGATCATCATCTAATGAGG 57.770 40.000 0.00 0.00 43.53 3.86
2098 2209 6.781507 TCACTGAGATCATCATCTAATGAGGT 59.218 38.462 0.00 0.00 43.53 3.85
2099 2210 6.869388 CACTGAGATCATCATCTAATGAGGTG 59.131 42.308 0.00 0.00 43.53 4.00
2100 2211 6.781507 ACTGAGATCATCATCTAATGAGGTGA 59.218 38.462 0.00 0.00 46.94 4.02
2101 2212 7.289549 ACTGAGATCATCATCTAATGAGGTGAA 59.710 37.037 0.00 0.00 46.01 3.18
2102 2213 7.440198 TGAGATCATCATCTAATGAGGTGAAC 58.560 38.462 0.00 0.00 46.01 3.18
2103 2214 7.289549 TGAGATCATCATCTAATGAGGTGAACT 59.710 37.037 0.00 3.21 46.01 3.01
2104 2215 7.669427 AGATCATCATCTAATGAGGTGAACTC 58.331 38.462 0.00 0.00 46.01 3.01
2105 2216 7.510001 AGATCATCATCTAATGAGGTGAACTCT 59.490 37.037 0.00 0.00 46.01 3.24
2106 2217 7.048629 TCATCATCTAATGAGGTGAACTCTC 57.951 40.000 0.00 0.00 46.01 3.20
2107 2218 6.838090 TCATCATCTAATGAGGTGAACTCTCT 59.162 38.462 0.00 0.00 46.01 3.10
2108 2219 7.344093 TCATCATCTAATGAGGTGAACTCTCTT 59.656 37.037 0.00 0.00 46.01 2.85
2109 2220 7.106439 TCATCTAATGAGGTGAACTCTCTTC 57.894 40.000 0.00 0.00 46.72 2.87
2110 2221 6.665248 TCATCTAATGAGGTGAACTCTCTTCA 59.335 38.462 0.00 0.00 46.72 3.02
2111 2222 7.344093 TCATCTAATGAGGTGAACTCTCTTCAT 59.656 37.037 0.00 1.76 46.72 2.57
2112 2223 6.871844 TCTAATGAGGTGAACTCTCTTCATG 58.128 40.000 0.00 0.00 46.72 3.07
2113 2224 3.969287 TGAGGTGAACTCTCTTCATGG 57.031 47.619 0.00 0.00 46.72 3.66
2114 2225 2.568956 TGAGGTGAACTCTCTTCATGGG 59.431 50.000 0.00 0.00 46.72 4.00
2115 2226 2.834549 GAGGTGAACTCTCTTCATGGGA 59.165 50.000 0.00 0.00 43.14 4.37
2119 2230 4.566488 GGTGAACTCTCTTCATGGGAATGT 60.566 45.833 0.00 0.00 31.34 2.71
2768 2891 4.436998 GGTGACGTCCAGCCCGAG 62.437 72.222 14.12 0.00 37.30 4.63
2941 3068 0.518636 CAAGACGTTCTACGACCCGA 59.481 55.000 6.19 0.00 46.05 5.14
3306 3460 1.598130 ACAGGTGAGCGTGCCTTTC 60.598 57.895 0.00 0.00 34.13 2.62
3328 3504 3.064207 TGAGTTAGTTCGTGTGCAATCC 58.936 45.455 0.00 0.00 0.00 3.01
3371 3552 3.840890 AAGGCGATCGAGATCACTATC 57.159 47.619 21.57 0.00 37.69 2.08
3372 3553 3.066291 AGGCGATCGAGATCACTATCT 57.934 47.619 21.57 0.00 45.46 1.98
3373 3554 4.209307 AGGCGATCGAGATCACTATCTA 57.791 45.455 21.57 0.00 42.73 1.98
3374 3555 3.936453 AGGCGATCGAGATCACTATCTAC 59.064 47.826 21.57 0.00 42.73 2.59
3479 3664 4.812476 CGGCGCGGTTCTGATCCA 62.812 66.667 8.83 0.00 0.00 3.41
3480 3665 3.195698 GGCGCGGTTCTGATCCAC 61.196 66.667 8.83 0.00 0.00 4.02
3484 3669 1.683790 CGCGGTTCTGATCCACGTTC 61.684 60.000 0.00 0.00 0.00 3.95
3655 3840 2.503920 GCATTGGCCTTGCATTAGAG 57.496 50.000 21.72 0.00 39.90 2.43
3780 3985 7.170998 GTGATGAGTTCATAGTTAATTACCCGG 59.829 40.741 0.00 0.00 36.54 5.73
4061 4271 2.104253 CGACCCCACCACGTAATGC 61.104 63.158 0.00 0.00 0.00 3.56
4083 4293 3.434167 CCATCTCCCGATCCTCATTTGTT 60.434 47.826 0.00 0.00 0.00 2.83
4813 5288 4.345257 TCCAAGGTTGCACTCTATCTATCC 59.655 45.833 0.00 0.00 0.00 2.59
5079 5558 5.589192 AGATTAAGATTAGGGTGTTCGACG 58.411 41.667 0.00 0.00 0.00 5.12
5091 5570 4.024641 GGGTGTTCGACGTTGTTTTCTAAT 60.025 41.667 1.96 0.00 0.00 1.73
5101 5580 7.744715 CGACGTTGTTTTCTAATGCTTTTAGAT 59.255 33.333 9.54 0.00 31.78 1.98
5197 5685 5.987347 GGAATGCCATTAAATGAAGACCATG 59.013 40.000 0.00 0.00 35.24 3.66
5214 5702 2.741517 CCATGTTAAGCGATGTGTCACA 59.258 45.455 8.40 8.40 0.00 3.58
5220 5708 0.389025 AGCGATGTGTCACACTGTGA 59.611 50.000 15.86 7.84 40.50 3.58
5264 5752 9.752961 GAGTTCATCTAAAATACTACTCCTTCC 57.247 37.037 0.00 0.00 0.00 3.46
5265 5753 8.414778 AGTTCATCTAAAATACTACTCCTTCCG 58.585 37.037 0.00 0.00 0.00 4.30
5266 5754 8.411683 GTTCATCTAAAATACTACTCCTTCCGA 58.588 37.037 0.00 0.00 0.00 4.55
5267 5755 8.707796 TCATCTAAAATACTACTCCTTCCGAT 57.292 34.615 0.00 0.00 0.00 4.18
5268 5756 8.794553 TCATCTAAAATACTACTCCTTCCGATC 58.205 37.037 0.00 0.00 0.00 3.69
5269 5757 7.521871 TCTAAAATACTACTCCTTCCGATCC 57.478 40.000 0.00 0.00 0.00 3.36
5271 5759 3.897657 ATACTACTCCTTCCGATCCCA 57.102 47.619 0.00 0.00 0.00 4.37
5272 5760 2.544844 ACTACTCCTTCCGATCCCAA 57.455 50.000 0.00 0.00 0.00 4.12
5275 5763 3.780850 ACTACTCCTTCCGATCCCAAAAT 59.219 43.478 0.00 0.00 0.00 1.82
5276 5764 4.966805 ACTACTCCTTCCGATCCCAAAATA 59.033 41.667 0.00 0.00 0.00 1.40
5278 5766 4.781934 ACTCCTTCCGATCCCAAAATAAG 58.218 43.478 0.00 0.00 0.00 1.73
5279 5767 4.227527 ACTCCTTCCGATCCCAAAATAAGT 59.772 41.667 0.00 0.00 0.00 2.24
5280 5768 4.523083 TCCTTCCGATCCCAAAATAAGTG 58.477 43.478 0.00 0.00 0.00 3.16
5281 5769 4.226394 TCCTTCCGATCCCAAAATAAGTGA 59.774 41.667 0.00 0.00 0.00 3.41
5282 5770 4.335594 CCTTCCGATCCCAAAATAAGTGAC 59.664 45.833 0.00 0.00 0.00 3.67
5283 5771 4.837093 TCCGATCCCAAAATAAGTGACT 57.163 40.909 0.00 0.00 0.00 3.41
5284 5772 4.766375 TCCGATCCCAAAATAAGTGACTC 58.234 43.478 0.00 0.00 0.00 3.36
5285 5773 4.224147 TCCGATCCCAAAATAAGTGACTCA 59.776 41.667 0.00 0.00 0.00 3.41
5286 5774 4.941263 CCGATCCCAAAATAAGTGACTCAA 59.059 41.667 0.00 0.00 0.00 3.02
5287 5775 5.590259 CCGATCCCAAAATAAGTGACTCAAT 59.410 40.000 0.00 0.00 0.00 2.57
5288 5776 6.458751 CCGATCCCAAAATAAGTGACTCAATG 60.459 42.308 0.00 0.00 0.00 2.82
5289 5777 6.094048 CGATCCCAAAATAAGTGACTCAATGT 59.906 38.462 0.00 0.00 0.00 2.71
5290 5778 7.362056 CGATCCCAAAATAAGTGACTCAATGTT 60.362 37.037 0.00 0.00 0.00 2.71
5291 5779 6.980593 TCCCAAAATAAGTGACTCAATGTTG 58.019 36.000 4.59 4.59 0.00 3.33
5292 5780 6.549364 TCCCAAAATAAGTGACTCAATGTTGT 59.451 34.615 8.91 0.00 0.00 3.32
5293 5781 7.721842 TCCCAAAATAAGTGACTCAATGTTGTA 59.278 33.333 8.91 0.00 0.00 2.41
5294 5782 7.807907 CCCAAAATAAGTGACTCAATGTTGTAC 59.192 37.037 8.91 0.00 0.00 2.90
5295 5783 8.567948 CCAAAATAAGTGACTCAATGTTGTACT 58.432 33.333 8.91 0.00 0.00 2.73
5299 5787 9.998106 AATAAGTGACTCAATGTTGTACTAACT 57.002 29.630 0.00 0.00 0.00 2.24
5300 5788 9.998106 ATAAGTGACTCAATGTTGTACTAACTT 57.002 29.630 0.00 0.00 0.00 2.66
5301 5789 8.732746 AAGTGACTCAATGTTGTACTAACTTT 57.267 30.769 0.00 0.00 0.00 2.66
5302 5790 9.826574 AAGTGACTCAATGTTGTACTAACTTTA 57.173 29.630 0.00 0.00 0.00 1.85
5303 5791 9.477484 AGTGACTCAATGTTGTACTAACTTTAG 57.523 33.333 0.00 0.00 36.82 1.85
5304 5792 9.257651 GTGACTCAATGTTGTACTAACTTTAGT 57.742 33.333 6.85 6.85 45.39 2.24
5315 5803 4.928263 ACTAACTTTAGTACGGAGGGAGT 58.072 43.478 0.00 0.00 41.92 3.85
5316 5804 6.067217 ACTAACTTTAGTACGGAGGGAGTA 57.933 41.667 0.00 0.00 41.92 2.59
5317 5805 6.667661 ACTAACTTTAGTACGGAGGGAGTAT 58.332 40.000 0.00 0.00 41.92 2.12
5318 5806 7.806180 ACTAACTTTAGTACGGAGGGAGTATA 58.194 38.462 0.00 0.00 41.92 1.47
5319 5807 8.275040 ACTAACTTTAGTACGGAGGGAGTATAA 58.725 37.037 0.00 0.00 41.92 0.98
5320 5808 6.951062 ACTTTAGTACGGAGGGAGTATAAC 57.049 41.667 0.00 0.00 0.00 1.89
5321 5809 6.426587 ACTTTAGTACGGAGGGAGTATAACA 58.573 40.000 0.00 0.00 0.00 2.41
5322 5810 7.065504 ACTTTAGTACGGAGGGAGTATAACAT 58.934 38.462 0.00 0.00 0.00 2.71
5323 5811 8.220559 ACTTTAGTACGGAGGGAGTATAACATA 58.779 37.037 0.00 0.00 0.00 2.29
5324 5812 8.627208 TTTAGTACGGAGGGAGTATAACATAG 57.373 38.462 0.00 0.00 0.00 2.23
5325 5813 6.445451 AGTACGGAGGGAGTATAACATAGA 57.555 41.667 0.00 0.00 0.00 1.98
5326 5814 7.030234 AGTACGGAGGGAGTATAACATAGAT 57.970 40.000 0.00 0.00 0.00 1.98
5327 5815 8.155620 AGTACGGAGGGAGTATAACATAGATA 57.844 38.462 0.00 0.00 0.00 1.98
5328 5816 8.046107 AGTACGGAGGGAGTATAACATAGATAC 58.954 40.741 0.00 0.00 0.00 2.24
5329 5817 7.030234 ACGGAGGGAGTATAACATAGATACT 57.970 40.000 0.00 0.00 41.73 2.12
5330 5818 8.155620 ACGGAGGGAGTATAACATAGATACTA 57.844 38.462 0.00 0.00 39.65 1.82
5331 5819 8.780003 ACGGAGGGAGTATAACATAGATACTAT 58.220 37.037 0.00 0.00 39.65 2.12
5332 5820 9.058174 CGGAGGGAGTATAACATAGATACTATG 57.942 40.741 14.64 14.64 39.65 2.23
5333 5821 9.924010 GGAGGGAGTATAACATAGATACTATGT 57.076 37.037 15.73 15.73 39.65 2.29
5359 5847 8.455903 ACTACAAAAGTAGTACTAGTGTGTGA 57.544 34.615 24.56 14.31 38.28 3.58
5360 5848 9.075678 ACTACAAAAGTAGTACTAGTGTGTGAT 57.924 33.333 24.56 15.58 38.28 3.06
5363 5851 8.853126 ACAAAAGTAGTACTAGTGTGTGATACA 58.147 33.333 19.41 0.00 36.82 2.29
5373 5861 2.831685 GTGTGATACACTCCACCACA 57.168 50.000 4.92 0.00 45.27 4.17
5374 5862 3.120321 GTGTGATACACTCCACCACAA 57.880 47.619 4.92 0.00 45.27 3.33
5375 5863 2.806244 GTGTGATACACTCCACCACAAC 59.194 50.000 4.92 0.00 45.27 3.32
5376 5864 2.224426 TGTGATACACTCCACCACAACC 60.224 50.000 0.00 0.00 35.16 3.77
5377 5865 1.001520 TGATACACTCCACCACAACCG 59.998 52.381 0.00 0.00 0.00 4.44
5378 5866 0.321298 ATACACTCCACCACAACCGC 60.321 55.000 0.00 0.00 0.00 5.68
5379 5867 2.702751 TACACTCCACCACAACCGCG 62.703 60.000 0.00 0.00 0.00 6.46
5380 5868 3.542676 ACTCCACCACAACCGCGA 61.543 61.111 8.23 0.00 0.00 5.87
5381 5869 2.738521 CTCCACCACAACCGCGAG 60.739 66.667 8.23 0.00 0.00 5.03
5382 5870 4.980805 TCCACCACAACCGCGAGC 62.981 66.667 8.23 0.00 0.00 5.03
5384 5872 3.716006 CACCACAACCGCGAGCAG 61.716 66.667 8.23 0.00 0.00 4.24
5388 5876 4.626081 ACAACCGCGAGCAGCCTT 62.626 61.111 8.23 0.00 44.76 4.35
5389 5877 2.434185 CAACCGCGAGCAGCCTTA 60.434 61.111 8.23 0.00 44.76 2.69
5390 5878 2.125512 AACCGCGAGCAGCCTTAG 60.126 61.111 8.23 0.00 44.76 2.18
5391 5879 2.646175 AACCGCGAGCAGCCTTAGA 61.646 57.895 8.23 0.00 44.76 2.10
5392 5880 2.167398 AACCGCGAGCAGCCTTAGAA 62.167 55.000 8.23 0.00 44.76 2.10
5393 5881 1.447838 CCGCGAGCAGCCTTAGAAA 60.448 57.895 8.23 0.00 44.76 2.52
5394 5882 1.019278 CCGCGAGCAGCCTTAGAAAA 61.019 55.000 8.23 0.00 44.76 2.29
5395 5883 0.796312 CGCGAGCAGCCTTAGAAAAA 59.204 50.000 0.00 0.00 44.76 1.94
5396 5884 1.201965 CGCGAGCAGCCTTAGAAAAAG 60.202 52.381 0.00 0.00 44.76 2.27
5397 5885 2.076863 GCGAGCAGCCTTAGAAAAAGA 58.923 47.619 0.00 0.00 40.81 2.52
5398 5886 2.484264 GCGAGCAGCCTTAGAAAAAGAA 59.516 45.455 0.00 0.00 40.81 2.52
5399 5887 3.668226 GCGAGCAGCCTTAGAAAAAGAAC 60.668 47.826 0.00 0.00 40.81 3.01
5400 5888 3.120165 CGAGCAGCCTTAGAAAAAGAACC 60.120 47.826 0.00 0.00 0.00 3.62
5401 5889 3.157881 AGCAGCCTTAGAAAAAGAACCC 58.842 45.455 0.00 0.00 0.00 4.11
5402 5890 2.890945 GCAGCCTTAGAAAAAGAACCCA 59.109 45.455 0.00 0.00 0.00 4.51
5403 5891 3.320826 GCAGCCTTAGAAAAAGAACCCAA 59.679 43.478 0.00 0.00 0.00 4.12
5404 5892 4.559502 GCAGCCTTAGAAAAAGAACCCAAG 60.560 45.833 0.00 0.00 0.00 3.61
5405 5893 4.584743 CAGCCTTAGAAAAAGAACCCAAGT 59.415 41.667 0.00 0.00 0.00 3.16
5406 5894 4.584743 AGCCTTAGAAAAAGAACCCAAGTG 59.415 41.667 0.00 0.00 0.00 3.16
5407 5895 4.796290 GCCTTAGAAAAAGAACCCAAGTGC 60.796 45.833 0.00 0.00 0.00 4.40
5408 5896 4.340950 CCTTAGAAAAAGAACCCAAGTGCA 59.659 41.667 0.00 0.00 0.00 4.57
5409 5897 5.163457 CCTTAGAAAAAGAACCCAAGTGCAA 60.163 40.000 0.00 0.00 0.00 4.08
5410 5898 4.817318 AGAAAAAGAACCCAAGTGCAAA 57.183 36.364 0.00 0.00 0.00 3.68
5411 5899 4.758688 AGAAAAAGAACCCAAGTGCAAAG 58.241 39.130 0.00 0.00 0.00 2.77
5412 5900 4.466015 AGAAAAAGAACCCAAGTGCAAAGA 59.534 37.500 0.00 0.00 0.00 2.52
5413 5901 3.801114 AAAGAACCCAAGTGCAAAGAC 57.199 42.857 0.00 0.00 0.00 3.01
5414 5902 2.736670 AGAACCCAAGTGCAAAGACT 57.263 45.000 0.00 0.00 0.00 3.24
5415 5903 3.018423 AGAACCCAAGTGCAAAGACTT 57.982 42.857 0.00 0.00 36.58 3.01
5422 5910 2.042686 AGTGCAAAGACTTGACAGCA 57.957 45.000 0.00 0.00 34.14 4.41
5423 5911 2.368439 AGTGCAAAGACTTGACAGCAA 58.632 42.857 0.00 0.00 34.14 3.91
5440 5928 9.719355 TTGACAGCAAGATAAGTAGACAATTAA 57.281 29.630 0.00 0.00 0.00 1.40
5441 5929 9.890629 TGACAGCAAGATAAGTAGACAATTAAT 57.109 29.630 0.00 0.00 0.00 1.40
5445 5933 9.197694 AGCAAGATAAGTAGACAATTAATAGCG 57.802 33.333 0.00 0.00 0.00 4.26
5446 5934 8.436200 GCAAGATAAGTAGACAATTAATAGCGG 58.564 37.037 0.00 0.00 0.00 5.52
5447 5935 9.477484 CAAGATAAGTAGACAATTAATAGCGGT 57.523 33.333 0.00 0.00 0.00 5.68
5459 5947 9.826574 ACAATTAATAGCGGTTAATTCTAGACA 57.173 29.630 14.98 0.00 40.47 3.41
5467 5955 8.732746 AGCGGTTAATTCTAGACATATTTTGT 57.267 30.769 0.00 0.00 42.79 2.83
5477 5965 3.168035 ACATATTTTGTCCACCAGCCA 57.832 42.857 0.00 0.00 30.89 4.75
5478 5966 2.825532 ACATATTTTGTCCACCAGCCAC 59.174 45.455 0.00 0.00 30.89 5.01
5479 5967 2.969821 TATTTTGTCCACCAGCCACT 57.030 45.000 0.00 0.00 0.00 4.00
5480 5968 2.086610 ATTTTGTCCACCAGCCACTT 57.913 45.000 0.00 0.00 0.00 3.16
5481 5969 1.859302 TTTTGTCCACCAGCCACTTT 58.141 45.000 0.00 0.00 0.00 2.66
5482 5970 2.738587 TTTGTCCACCAGCCACTTTA 57.261 45.000 0.00 0.00 0.00 1.85
5483 5971 2.270352 TTGTCCACCAGCCACTTTAG 57.730 50.000 0.00 0.00 0.00 1.85
5484 5972 1.429930 TGTCCACCAGCCACTTTAGA 58.570 50.000 0.00 0.00 0.00 2.10
5485 5973 1.347707 TGTCCACCAGCCACTTTAGAG 59.652 52.381 0.00 0.00 0.00 2.43
5486 5974 1.623811 GTCCACCAGCCACTTTAGAGA 59.376 52.381 0.00 0.00 0.00 3.10
5487 5975 2.237392 GTCCACCAGCCACTTTAGAGAT 59.763 50.000 0.00 0.00 0.00 2.75
5488 5976 3.451178 GTCCACCAGCCACTTTAGAGATA 59.549 47.826 0.00 0.00 0.00 1.98
5489 5977 4.101741 GTCCACCAGCCACTTTAGAGATAT 59.898 45.833 0.00 0.00 0.00 1.63
5490 5978 5.304614 GTCCACCAGCCACTTTAGAGATATA 59.695 44.000 0.00 0.00 0.00 0.86
5491 5979 5.903010 TCCACCAGCCACTTTAGAGATATAA 59.097 40.000 0.00 0.00 0.00 0.98
5492 5980 5.992217 CCACCAGCCACTTTAGAGATATAAC 59.008 44.000 0.00 0.00 0.00 1.89
5493 5981 5.992217 CACCAGCCACTTTAGAGATATAACC 59.008 44.000 0.00 0.00 0.00 2.85
5494 5982 5.665812 ACCAGCCACTTTAGAGATATAACCA 59.334 40.000 0.00 0.00 0.00 3.67
5495 5983 6.157994 ACCAGCCACTTTAGAGATATAACCAA 59.842 38.462 0.00 0.00 0.00 3.67
5496 5984 7.147302 ACCAGCCACTTTAGAGATATAACCAAT 60.147 37.037 0.00 0.00 0.00 3.16
5497 5985 7.173907 CCAGCCACTTTAGAGATATAACCAATG 59.826 40.741 0.00 0.00 0.00 2.82
5498 5986 7.933577 CAGCCACTTTAGAGATATAACCAATGA 59.066 37.037 0.00 0.00 0.00 2.57
5499 5987 7.934120 AGCCACTTTAGAGATATAACCAATGAC 59.066 37.037 0.00 0.00 0.00 3.06
5500 5988 7.715249 GCCACTTTAGAGATATAACCAATGACA 59.285 37.037 0.00 0.00 0.00 3.58
5501 5989 9.784531 CCACTTTAGAGATATAACCAATGACAT 57.215 33.333 0.00 0.00 0.00 3.06
5522 6010 7.078249 ACATTGATATATGTCAGTTAGGCCA 57.922 36.000 5.01 0.00 33.58 5.36
5523 6011 7.164122 ACATTGATATATGTCAGTTAGGCCAG 58.836 38.462 5.01 0.00 33.58 4.85
5524 6012 6.747414 TTGATATATGTCAGTTAGGCCAGT 57.253 37.500 5.01 0.00 0.00 4.00
5525 6013 6.747414 TGATATATGTCAGTTAGGCCAGTT 57.253 37.500 5.01 0.00 0.00 3.16
5526 6014 7.849322 TGATATATGTCAGTTAGGCCAGTTA 57.151 36.000 5.01 0.00 0.00 2.24
5527 6015 7.896811 TGATATATGTCAGTTAGGCCAGTTAG 58.103 38.462 5.01 0.00 0.00 2.34
5528 6016 3.914426 ATGTCAGTTAGGCCAGTTAGG 57.086 47.619 5.01 0.00 41.84 2.69
5540 6028 3.806625 CCAGTTAGGCCAATTGGATTG 57.193 47.619 29.02 13.29 44.78 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.302383 CTGAGCTCGTCGGACTCTGT 61.302 60.000 9.64 0.00 32.51 3.41
1 2 1.427419 CTGAGCTCGTCGGACTCTG 59.573 63.158 9.64 10.72 32.51 3.35
6 7 0.392595 TCTAAGCTGAGCTCGTCGGA 60.393 55.000 7.72 0.00 38.25 4.55
7 8 0.665835 ATCTAAGCTGAGCTCGTCGG 59.334 55.000 7.72 0.40 38.25 4.79
8 9 2.483583 AATCTAAGCTGAGCTCGTCG 57.516 50.000 7.72 0.98 38.25 5.12
10 11 5.782893 AATCTAATCTAAGCTGAGCTCGT 57.217 39.130 7.72 0.00 38.25 4.18
11 12 7.149047 CGTAAAATCTAATCTAAGCTGAGCTCG 60.149 40.741 7.72 1.93 38.25 5.03
12 13 7.650104 ACGTAAAATCTAATCTAAGCTGAGCTC 59.350 37.037 7.72 6.82 38.25 4.09
13 14 7.493367 ACGTAAAATCTAATCTAAGCTGAGCT 58.507 34.615 0.00 0.00 42.56 4.09
14 15 7.701809 ACGTAAAATCTAATCTAAGCTGAGC 57.298 36.000 0.00 0.00 0.00 4.26
15 16 8.058915 GCAACGTAAAATCTAATCTAAGCTGAG 58.941 37.037 0.00 0.00 0.00 3.35
16 17 7.547722 TGCAACGTAAAATCTAATCTAAGCTGA 59.452 33.333 0.00 0.00 0.00 4.26
17 18 7.684670 TGCAACGTAAAATCTAATCTAAGCTG 58.315 34.615 0.00 0.00 0.00 4.24
62 63 9.971922 CCTCATTGGATACCTCAATTAAAAATC 57.028 33.333 0.00 0.00 38.35 2.17
63 64 8.927411 CCCTCATTGGATACCTCAATTAAAAAT 58.073 33.333 0.00 0.00 38.35 1.82
64 65 7.898636 ACCCTCATTGGATACCTCAATTAAAAA 59.101 33.333 0.00 0.00 38.35 1.94
65 66 7.418378 ACCCTCATTGGATACCTCAATTAAAA 58.582 34.615 0.00 0.00 38.35 1.52
66 67 6.980577 ACCCTCATTGGATACCTCAATTAAA 58.019 36.000 0.00 0.00 38.35 1.52
67 68 6.590656 ACCCTCATTGGATACCTCAATTAA 57.409 37.500 0.00 0.00 38.35 1.40
68 69 6.364701 CAACCCTCATTGGATACCTCAATTA 58.635 40.000 0.00 0.00 38.35 1.40
69 70 5.203528 CAACCCTCATTGGATACCTCAATT 58.796 41.667 0.00 0.00 38.35 2.32
70 71 4.796606 CAACCCTCATTGGATACCTCAAT 58.203 43.478 0.00 0.00 38.35 2.57
71 72 4.235079 CAACCCTCATTGGATACCTCAA 57.765 45.455 0.00 0.00 38.35 3.02
72 73 3.931907 CAACCCTCATTGGATACCTCA 57.068 47.619 0.00 0.00 38.35 3.86
81 82 3.324556 ACACCAAAATCCAACCCTCATTG 59.675 43.478 0.00 0.00 0.00 2.82
82 83 3.586429 ACACCAAAATCCAACCCTCATT 58.414 40.909 0.00 0.00 0.00 2.57
83 84 3.258722 ACACCAAAATCCAACCCTCAT 57.741 42.857 0.00 0.00 0.00 2.90
84 85 2.765689 ACACCAAAATCCAACCCTCA 57.234 45.000 0.00 0.00 0.00 3.86
85 86 3.699538 GGATACACCAAAATCCAACCCTC 59.300 47.826 0.00 0.00 41.21 4.30
86 87 3.708451 GGATACACCAAAATCCAACCCT 58.292 45.455 0.00 0.00 41.21 4.34
87 88 2.425668 CGGATACACCAAAATCCAACCC 59.574 50.000 2.56 0.00 41.57 4.11
88 89 2.425668 CCGGATACACCAAAATCCAACC 59.574 50.000 0.00 0.00 41.57 3.77
89 90 2.159296 GCCGGATACACCAAAATCCAAC 60.159 50.000 5.05 0.00 41.57 3.77
90 91 2.096248 GCCGGATACACCAAAATCCAA 58.904 47.619 5.05 0.00 41.57 3.53
91 92 1.283613 AGCCGGATACACCAAAATCCA 59.716 47.619 5.05 0.00 41.57 3.41
92 93 1.676006 CAGCCGGATACACCAAAATCC 59.324 52.381 5.05 0.00 38.66 3.01
93 94 2.639065 TCAGCCGGATACACCAAAATC 58.361 47.619 5.05 0.00 38.90 2.17
94 95 2.799126 TCAGCCGGATACACCAAAAT 57.201 45.000 5.05 0.00 38.90 1.82
95 96 2.364632 CATCAGCCGGATACACCAAAA 58.635 47.619 5.05 0.00 38.90 2.44
96 97 2.016604 GCATCAGCCGGATACACCAAA 61.017 52.381 5.05 0.00 38.90 3.28
97 98 0.463654 GCATCAGCCGGATACACCAA 60.464 55.000 5.05 0.00 38.90 3.67
98 99 1.146041 GCATCAGCCGGATACACCA 59.854 57.895 5.05 0.00 38.90 4.17
99 100 0.601311 GAGCATCAGCCGGATACACC 60.601 60.000 5.05 0.00 43.56 4.16
100 101 0.390860 AGAGCATCAGCCGGATACAC 59.609 55.000 5.05 0.00 43.56 2.90
101 102 0.676184 GAGAGCATCAGCCGGATACA 59.324 55.000 5.05 0.00 43.56 2.29
102 103 0.676184 TGAGAGCATCAGCCGGATAC 59.324 55.000 5.05 0.00 43.56 2.24
103 104 1.637338 ATGAGAGCATCAGCCGGATA 58.363 50.000 5.05 0.00 42.53 2.59
104 105 2.449870 ATGAGAGCATCAGCCGGAT 58.550 52.632 5.05 0.00 42.53 4.18
105 106 3.961009 ATGAGAGCATCAGCCGGA 58.039 55.556 5.05 0.00 42.53 5.14
121 122 0.824182 GGAGGTCGGTCCAGATCGAT 60.824 60.000 6.26 0.00 46.39 3.59
247 248 3.691094 GCACTTGCAGGTGAGTACACAG 61.691 54.545 30.90 2.43 43.62 3.66
291 292 1.376466 CCCCCATCTATTGCCCTCG 59.624 63.158 0.00 0.00 0.00 4.63
293 294 0.328450 TCACCCCCATCTATTGCCCT 60.328 55.000 0.00 0.00 0.00 5.19
301 302 1.916181 CTACAGGTTTCACCCCCATCT 59.084 52.381 0.00 0.00 39.75 2.90
306 307 1.066071 GCTCTCTACAGGTTTCACCCC 60.066 57.143 0.00 0.00 39.75 4.95
307 308 1.623811 TGCTCTCTACAGGTTTCACCC 59.376 52.381 0.00 0.00 39.75 4.61
308 309 2.933056 GCTGCTCTCTACAGGTTTCACC 60.933 54.545 0.00 0.00 38.99 4.02
309 310 2.028567 AGCTGCTCTCTACAGGTTTCAC 60.029 50.000 0.00 0.00 42.98 3.18
310 311 2.028658 CAGCTGCTCTCTACAGGTTTCA 60.029 50.000 0.00 0.00 42.98 2.69
396 423 0.522180 GGATACACCGCGATCGATCT 59.478 55.000 21.57 5.87 38.10 2.75
397 424 3.017232 GGATACACCGCGATCGATC 57.983 57.895 21.57 15.68 38.10 3.69
423 450 1.334599 CGTTTTTCCACCATCACCACG 60.335 52.381 0.00 0.00 0.00 4.94
425 452 2.060050 ACGTTTTTCCACCATCACCA 57.940 45.000 0.00 0.00 0.00 4.17
426 453 3.754323 TGATACGTTTTTCCACCATCACC 59.246 43.478 0.00 0.00 0.00 4.02
534 562 2.809601 GCTCGTGGTCGATTGCGT 60.810 61.111 0.00 0.00 45.21 5.24
538 566 1.136984 GTCTCGCTCGTGGTCGATT 59.863 57.895 0.00 0.00 45.21 3.34
665 693 1.371558 GGGTCTGGTTGCTCGAGTT 59.628 57.895 15.13 0.00 0.00 3.01
792 825 7.054751 GTGCCAGTACTCCTATATTTTCCTTT 58.945 38.462 0.00 0.00 0.00 3.11
813 849 3.072184 ACATCATCTGATAGGGAAGTGCC 59.928 47.826 0.00 0.00 32.63 5.01
871 907 9.658799 AATTCAGATACGAAGAGAGATTTTTCA 57.341 29.630 0.00 0.00 0.00 2.69
887 923 4.156008 ACAAAAGGCCACGAATTCAGATAC 59.844 41.667 5.01 0.00 0.00 2.24
1083 1123 0.877071 CCACCATTGCACTCACACTC 59.123 55.000 0.00 0.00 0.00 3.51
1092 1132 0.831288 CCCCAAGAACCACCATTGCA 60.831 55.000 0.00 0.00 0.00 4.08
1101 1141 1.911057 CAACTCTTCCCCCAAGAACC 58.089 55.000 0.00 0.00 40.83 3.62
1107 1147 1.383799 CCATGCAACTCTTCCCCCA 59.616 57.895 0.00 0.00 0.00 4.96
1272 1321 5.872617 TGTACCGTTGATCCAGTTCTTTATG 59.127 40.000 0.00 0.00 0.00 1.90
1411 1462 0.035458 AGTTGTCCGAAGAGCAAGGG 59.965 55.000 0.00 0.00 0.00 3.95
1621 1673 0.032952 GTGACCGTAGCCAGTTCACA 59.967 55.000 0.00 0.00 0.00 3.58
1630 1682 4.509737 GAGCCCCGTGACCGTAGC 62.510 72.222 0.00 0.00 0.00 3.58
1680 1736 0.956633 ATCCACACAAGTGCAAGCTG 59.043 50.000 0.00 0.00 44.53 4.24
1727 1822 4.662278 AGAGCCAGTTATAAACCTTTGCA 58.338 39.130 0.00 0.00 0.00 4.08
1787 1887 3.074369 TGGCATTCGGAGAGCGGA 61.074 61.111 0.00 0.00 38.43 5.54
1788 1888 2.892425 GTGGCATTCGGAGAGCGG 60.892 66.667 0.00 0.00 38.43 5.52
1789 1889 3.257561 CGTGGCATTCGGAGAGCG 61.258 66.667 0.00 0.00 38.43 5.03
1790 1890 3.567797 GCGTGGCATTCGGAGAGC 61.568 66.667 0.00 0.00 38.43 4.09
1791 1891 2.892425 GGCGTGGCATTCGGAGAG 60.892 66.667 0.00 0.00 38.43 3.20
1792 1892 3.664025 CTGGCGTGGCATTCGGAGA 62.664 63.158 0.00 0.00 0.00 3.71
1793 1893 2.930385 ATCTGGCGTGGCATTCGGAG 62.930 60.000 0.00 0.00 0.00 4.63
1794 1894 2.923426 GATCTGGCGTGGCATTCGGA 62.923 60.000 0.00 0.00 0.00 4.55
1795 1895 2.514592 ATCTGGCGTGGCATTCGG 60.515 61.111 0.00 0.00 0.00 4.30
1893 1993 2.301577 ACACGGATTCTTCTAGCAGC 57.698 50.000 0.00 0.00 0.00 5.25
1900 2000 2.808543 AGTTGCAGAACACGGATTCTTC 59.191 45.455 0.98 0.00 36.78 2.87
2008 2118 0.451783 CATAGGGTTGCAAGTTCGCC 59.548 55.000 0.00 0.00 0.00 5.54
2010 2120 3.996825 GCATAGGGTTGCAAGTTCG 57.003 52.632 0.00 0.00 42.31 3.95
2039 2149 9.768662 GACCAGCCAATTATTTTCATTCATTAT 57.231 29.630 0.00 0.00 0.00 1.28
2043 2153 6.602410 TGACCAGCCAATTATTTTCATTCA 57.398 33.333 0.00 0.00 0.00 2.57
2062 2172 7.044181 TGATGATCTCAGTGAAGTTAATGACC 58.956 38.462 0.00 0.00 0.00 4.02
2087 2198 7.418827 CCATGAAGAGAGTTCACCTCATTAGAT 60.419 40.741 0.00 0.00 43.12 1.98
2088 2199 6.127225 CCATGAAGAGAGTTCACCTCATTAGA 60.127 42.308 0.00 0.00 43.12 2.10
2089 2200 6.047870 CCATGAAGAGAGTTCACCTCATTAG 58.952 44.000 0.00 0.00 43.12 1.73
2091 2202 4.324099 CCCATGAAGAGAGTTCACCTCATT 60.324 45.833 0.00 0.00 43.12 2.57
2092 2203 3.199508 CCCATGAAGAGAGTTCACCTCAT 59.800 47.826 0.00 0.00 43.12 2.90
2093 2204 2.568956 CCCATGAAGAGAGTTCACCTCA 59.431 50.000 0.00 0.00 43.12 3.86
2094 2205 2.834549 TCCCATGAAGAGAGTTCACCTC 59.165 50.000 0.00 0.00 40.80 3.85
2095 2206 2.907892 TCCCATGAAGAGAGTTCACCT 58.092 47.619 0.00 0.00 0.00 4.00
2096 2207 3.703001 TTCCCATGAAGAGAGTTCACC 57.297 47.619 0.00 0.00 0.00 4.02
2097 2208 4.394300 CACATTCCCATGAAGAGAGTTCAC 59.606 45.833 0.00 0.00 33.05 3.18
2098 2209 4.286808 TCACATTCCCATGAAGAGAGTTCA 59.713 41.667 0.00 0.00 33.05 3.18
2099 2210 4.836825 TCACATTCCCATGAAGAGAGTTC 58.163 43.478 0.00 0.00 33.05 3.01
2100 2211 4.916041 TCACATTCCCATGAAGAGAGTT 57.084 40.909 0.00 0.00 33.05 3.01
2101 2212 4.916041 TTCACATTCCCATGAAGAGAGT 57.084 40.909 0.00 0.00 33.05 3.24
2102 2213 5.066117 CACATTCACATTCCCATGAAGAGAG 59.934 44.000 0.00 0.00 38.19 3.20
2103 2214 4.945543 CACATTCACATTCCCATGAAGAGA 59.054 41.667 0.00 0.00 38.19 3.10
2104 2215 4.945543 TCACATTCACATTCCCATGAAGAG 59.054 41.667 0.00 0.00 38.19 2.85
2105 2216 4.920999 TCACATTCACATTCCCATGAAGA 58.079 39.130 0.00 0.00 38.19 2.87
2106 2217 5.184479 AGTTCACATTCACATTCCCATGAAG 59.816 40.000 0.00 0.00 38.19 3.02
2107 2218 5.047872 CAGTTCACATTCACATTCCCATGAA 60.048 40.000 0.00 0.00 39.09 2.57
2108 2219 4.460034 CAGTTCACATTCACATTCCCATGA 59.540 41.667 0.00 0.00 34.11 3.07
2109 2220 4.381185 CCAGTTCACATTCACATTCCCATG 60.381 45.833 0.00 0.00 36.34 3.66
2110 2221 3.765511 CCAGTTCACATTCACATTCCCAT 59.234 43.478 0.00 0.00 0.00 4.00
2111 2222 3.156293 CCAGTTCACATTCACATTCCCA 58.844 45.455 0.00 0.00 0.00 4.37
2112 2223 3.191371 GTCCAGTTCACATTCACATTCCC 59.809 47.826 0.00 0.00 0.00 3.97
2113 2224 3.820467 TGTCCAGTTCACATTCACATTCC 59.180 43.478 0.00 0.00 0.00 3.01
2114 2225 5.048504 ACATGTCCAGTTCACATTCACATTC 60.049 40.000 0.00 0.00 31.83 2.67
2115 2226 4.828939 ACATGTCCAGTTCACATTCACATT 59.171 37.500 0.00 0.00 31.83 2.71
2119 2230 3.814842 GTCACATGTCCAGTTCACATTCA 59.185 43.478 0.00 0.00 31.83 2.57
2372 2483 1.537990 CGATGCCCGTGTACATGATCA 60.538 52.381 16.87 13.02 0.00 2.92
2901 3028 3.126729 GGCGTAGAAGTTGCCGTAA 57.873 52.632 0.00 0.00 39.30 3.18
2941 3068 2.661866 GATACGGCGGCGCTTGAT 60.662 61.111 32.57 20.81 0.00 2.57
3306 3460 3.123621 GGATTGCACACGAACTAACTCAG 59.876 47.826 0.00 0.00 0.00 3.35
3328 3504 4.286297 TGGTCCTAGAAAATGTCACCTG 57.714 45.455 0.00 0.00 0.00 4.00
3371 3552 1.067142 TCAAGGCAAGGCAGTACGTAG 60.067 52.381 0.00 0.00 0.00 3.51
3372 3553 0.970640 TCAAGGCAAGGCAGTACGTA 59.029 50.000 0.00 0.00 0.00 3.57
3373 3554 0.320771 CTCAAGGCAAGGCAGTACGT 60.321 55.000 0.00 0.00 0.00 3.57
3374 3555 0.320771 ACTCAAGGCAAGGCAGTACG 60.321 55.000 0.00 0.00 0.00 3.67
3469 3654 2.288825 TGGACAGAACGTGGATCAGAAC 60.289 50.000 0.00 0.00 0.00 3.01
3474 3659 1.000955 ACACTGGACAGAACGTGGATC 59.999 52.381 6.29 0.00 0.00 3.36
3479 3664 0.530650 CTGCACACTGGACAGAACGT 60.531 55.000 6.29 0.00 33.10 3.99
3480 3665 0.530650 ACTGCACACTGGACAGAACG 60.531 55.000 6.29 0.00 35.38 3.95
3484 3669 2.256591 GGCACTGCACACTGGACAG 61.257 63.158 2.82 0.00 37.45 3.51
3650 3835 4.220821 CAGTTCAGTTGGAGCCTACTCTAA 59.779 45.833 0.54 0.00 42.98 2.10
3652 3837 2.564947 CAGTTCAGTTGGAGCCTACTCT 59.435 50.000 0.54 0.00 42.98 3.24
3654 3839 2.609747 TCAGTTCAGTTGGAGCCTACT 58.390 47.619 0.00 0.00 32.63 2.57
3655 3840 3.265791 CATCAGTTCAGTTGGAGCCTAC 58.734 50.000 0.00 0.00 0.00 3.18
3723 3927 7.116233 CACTTACAAAAGGGAACAAACATATGC 59.884 37.037 1.58 0.00 38.51 3.14
3780 3985 3.753272 TCAGCCTGATGAAACAAGTTAGC 59.247 43.478 0.00 0.00 0.00 3.09
3849 4054 4.096003 GGCTAGCGCTGGGTCCAA 62.096 66.667 22.90 0.00 36.09 3.53
4083 4293 8.275015 TGCGTGAGAAATAATGAATTTAAGGA 57.725 30.769 0.00 0.00 37.93 3.36
4121 4331 6.153067 ACGTCAGATCAATGCTAGCTAATAC 58.847 40.000 17.23 3.51 0.00 1.89
4122 4332 6.332735 ACGTCAGATCAATGCTAGCTAATA 57.667 37.500 17.23 0.00 0.00 0.98
4625 5100 5.152097 CACGTAGAACTATCACGTTTCACT 58.848 41.667 0.00 0.00 45.93 3.41
4647 5122 1.209504 ACCTAGCTACGTACGTACCCA 59.790 52.381 23.60 6.37 0.00 4.51
4742 5217 0.039256 CTTTCCACCAATGTGCACGG 60.039 55.000 13.13 10.09 41.35 4.94
4748 5223 9.243105 GGCAATATATATACTTTCCACCAATGT 57.757 33.333 0.00 0.00 0.00 2.71
4773 5248 2.758009 TGGAAACTAAAACTCGTCCGG 58.242 47.619 0.00 0.00 0.00 5.14
4813 5288 7.607991 ACCTTTCCTTTAGCGATATAATGGATG 59.392 37.037 9.42 7.08 38.23 3.51
4848 5323 1.542328 CCCGGCGATGGTCATATTGAA 60.542 52.381 9.30 0.00 0.00 2.69
5070 5549 4.374828 GCATTAGAAAACAACGTCGAACAC 59.625 41.667 0.00 0.00 0.00 3.32
5079 5558 9.140286 GGGAATCTAAAAGCATTAGAAAACAAC 57.860 33.333 13.82 4.66 34.99 3.32
5091 5570 3.008594 TCCACTTCGGGAATCTAAAAGCA 59.991 43.478 0.00 0.00 32.90 3.91
5101 5580 1.001633 GTACTTGCTCCACTTCGGGAA 59.998 52.381 0.00 0.00 36.27 3.97
5197 5685 2.800544 ACAGTGTGACACATCGCTTAAC 59.199 45.455 18.95 0.00 36.74 2.01
5214 5702 7.208777 TCATTTATTGTTTTGCATGTCACAGT 58.791 30.769 0.00 0.00 0.00 3.55
5220 5708 8.836268 ATGAACTCATTTATTGTTTTGCATGT 57.164 26.923 0.00 0.00 31.37 3.21
5257 5745 4.576463 CACTTATTTTGGGATCGGAAGGAG 59.424 45.833 0.00 0.00 0.00 3.69
5258 5746 4.226394 TCACTTATTTTGGGATCGGAAGGA 59.774 41.667 0.00 0.00 0.00 3.36
5260 5748 5.186198 AGTCACTTATTTTGGGATCGGAAG 58.814 41.667 0.00 0.00 0.00 3.46
5261 5749 5.174037 AGTCACTTATTTTGGGATCGGAA 57.826 39.130 0.00 0.00 0.00 4.30
5262 5750 4.224147 TGAGTCACTTATTTTGGGATCGGA 59.776 41.667 0.00 0.00 0.00 4.55
5263 5751 4.513442 TGAGTCACTTATTTTGGGATCGG 58.487 43.478 0.00 0.00 0.00 4.18
5264 5752 6.094048 ACATTGAGTCACTTATTTTGGGATCG 59.906 38.462 0.00 0.00 0.00 3.69
5265 5753 7.396540 ACATTGAGTCACTTATTTTGGGATC 57.603 36.000 0.00 0.00 0.00 3.36
5266 5754 7.233348 ACAACATTGAGTCACTTATTTTGGGAT 59.767 33.333 0.00 0.00 0.00 3.85
5267 5755 6.549364 ACAACATTGAGTCACTTATTTTGGGA 59.451 34.615 0.00 0.00 0.00 4.37
5268 5756 6.748132 ACAACATTGAGTCACTTATTTTGGG 58.252 36.000 0.00 0.00 0.00 4.12
5269 5757 8.567948 AGTACAACATTGAGTCACTTATTTTGG 58.432 33.333 0.00 0.00 0.00 3.28
5275 5763 9.826574 AAAGTTAGTACAACATTGAGTCACTTA 57.173 29.630 0.00 0.00 0.00 2.24
5276 5764 8.732746 AAAGTTAGTACAACATTGAGTCACTT 57.267 30.769 0.00 0.00 0.00 3.16
5278 5766 9.257651 ACTAAAGTTAGTACAACATTGAGTCAC 57.742 33.333 1.81 0.00 41.92 3.67
5292 5780 6.067217 ACTCCCTCCGTACTAAAGTTAGTA 57.933 41.667 6.81 6.81 43.36 1.82
5293 5781 4.928263 ACTCCCTCCGTACTAAAGTTAGT 58.072 43.478 8.67 8.67 45.39 2.24
5294 5782 8.563732 GTTATACTCCCTCCGTACTAAAGTTAG 58.436 40.741 0.00 0.00 36.82 2.34
5295 5783 8.052748 TGTTATACTCCCTCCGTACTAAAGTTA 58.947 37.037 0.00 0.00 0.00 2.24
5296 5784 6.891908 TGTTATACTCCCTCCGTACTAAAGTT 59.108 38.462 0.00 0.00 0.00 2.66
5297 5785 6.426587 TGTTATACTCCCTCCGTACTAAAGT 58.573 40.000 0.00 0.00 0.00 2.66
5298 5786 6.949352 TGTTATACTCCCTCCGTACTAAAG 57.051 41.667 0.00 0.00 0.00 1.85
5299 5787 8.439971 TCTATGTTATACTCCCTCCGTACTAAA 58.560 37.037 0.00 0.00 0.00 1.85
5300 5788 7.977818 TCTATGTTATACTCCCTCCGTACTAA 58.022 38.462 0.00 0.00 0.00 2.24
5301 5789 7.559335 TCTATGTTATACTCCCTCCGTACTA 57.441 40.000 0.00 0.00 0.00 1.82
5302 5790 6.445451 TCTATGTTATACTCCCTCCGTACT 57.555 41.667 0.00 0.00 0.00 2.73
5303 5791 8.046107 AGTATCTATGTTATACTCCCTCCGTAC 58.954 40.741 0.00 0.00 35.70 3.67
5304 5792 8.155620 AGTATCTATGTTATACTCCCTCCGTA 57.844 38.462 0.00 0.00 35.70 4.02
5305 5793 7.030234 AGTATCTATGTTATACTCCCTCCGT 57.970 40.000 0.00 0.00 35.70 4.69
5306 5794 9.058174 CATAGTATCTATGTTATACTCCCTCCG 57.942 40.741 8.17 0.00 40.02 4.63
5307 5795 9.924010 ACATAGTATCTATGTTATACTCCCTCC 57.076 37.037 14.27 0.00 40.02 4.30
5337 5825 8.853126 TGTATCACACACTAGTACTACTTTTGT 58.147 33.333 0.00 0.00 30.04 2.83
5355 5843 2.224426 GGTTGTGGTGGAGTGTATCACA 60.224 50.000 2.80 0.00 37.38 3.58
5356 5844 2.423577 GGTTGTGGTGGAGTGTATCAC 58.576 52.381 0.00 0.00 34.10 3.06
5357 5845 1.001520 CGGTTGTGGTGGAGTGTATCA 59.998 52.381 0.00 0.00 0.00 2.15
5358 5846 1.722011 CGGTTGTGGTGGAGTGTATC 58.278 55.000 0.00 0.00 0.00 2.24
5359 5847 0.321298 GCGGTTGTGGTGGAGTGTAT 60.321 55.000 0.00 0.00 0.00 2.29
5360 5848 1.070105 GCGGTTGTGGTGGAGTGTA 59.930 57.895 0.00 0.00 0.00 2.90
5361 5849 2.203153 GCGGTTGTGGTGGAGTGT 60.203 61.111 0.00 0.00 0.00 3.55
5362 5850 3.345808 CGCGGTTGTGGTGGAGTG 61.346 66.667 0.00 0.00 0.00 3.51
5363 5851 3.515316 CTCGCGGTTGTGGTGGAGT 62.515 63.158 6.13 0.00 0.00 3.85
5364 5852 2.738521 CTCGCGGTTGTGGTGGAG 60.739 66.667 6.13 0.00 0.00 3.86
5365 5853 4.980805 GCTCGCGGTTGTGGTGGA 62.981 66.667 6.13 0.00 0.00 4.02
5367 5855 3.716006 CTGCTCGCGGTTGTGGTG 61.716 66.667 6.13 0.00 0.00 4.17
5371 5859 3.234630 TAAGGCTGCTCGCGGTTGT 62.235 57.895 6.13 0.00 40.44 3.32
5372 5860 2.434185 TAAGGCTGCTCGCGGTTG 60.434 61.111 6.13 0.00 40.44 3.77
5373 5861 2.125512 CTAAGGCTGCTCGCGGTT 60.126 61.111 6.13 0.00 40.44 4.44
5374 5862 2.167398 TTTCTAAGGCTGCTCGCGGT 62.167 55.000 6.13 0.00 40.44 5.68
5375 5863 1.019278 TTTTCTAAGGCTGCTCGCGG 61.019 55.000 6.13 0.00 40.44 6.46
5376 5864 0.796312 TTTTTCTAAGGCTGCTCGCG 59.204 50.000 0.00 0.00 40.44 5.87
5377 5865 2.076863 TCTTTTTCTAAGGCTGCTCGC 58.923 47.619 0.00 0.00 38.13 5.03
5378 5866 3.120165 GGTTCTTTTTCTAAGGCTGCTCG 60.120 47.826 0.00 0.00 0.00 5.03
5379 5867 3.191581 GGGTTCTTTTTCTAAGGCTGCTC 59.808 47.826 0.00 0.00 0.00 4.26
5380 5868 3.157881 GGGTTCTTTTTCTAAGGCTGCT 58.842 45.455 0.00 0.00 0.00 4.24
5381 5869 2.890945 TGGGTTCTTTTTCTAAGGCTGC 59.109 45.455 0.00 0.00 0.00 5.25
5382 5870 4.584743 ACTTGGGTTCTTTTTCTAAGGCTG 59.415 41.667 0.00 0.00 0.00 4.85
5383 5871 4.584743 CACTTGGGTTCTTTTTCTAAGGCT 59.415 41.667 0.00 0.00 0.00 4.58
5384 5872 4.796290 GCACTTGGGTTCTTTTTCTAAGGC 60.796 45.833 0.00 0.00 0.00 4.35
5385 5873 4.340950 TGCACTTGGGTTCTTTTTCTAAGG 59.659 41.667 0.00 0.00 0.00 2.69
5386 5874 5.514274 TGCACTTGGGTTCTTTTTCTAAG 57.486 39.130 0.00 0.00 0.00 2.18
5387 5875 5.923733 TTGCACTTGGGTTCTTTTTCTAA 57.076 34.783 0.00 0.00 0.00 2.10
5388 5876 5.654650 TCTTTGCACTTGGGTTCTTTTTCTA 59.345 36.000 0.00 0.00 0.00 2.10
5389 5877 4.466015 TCTTTGCACTTGGGTTCTTTTTCT 59.534 37.500 0.00 0.00 0.00 2.52
5390 5878 4.566759 GTCTTTGCACTTGGGTTCTTTTTC 59.433 41.667 0.00 0.00 0.00 2.29
5391 5879 4.222810 AGTCTTTGCACTTGGGTTCTTTTT 59.777 37.500 0.00 0.00 0.00 1.94
5392 5880 3.769300 AGTCTTTGCACTTGGGTTCTTTT 59.231 39.130 0.00 0.00 0.00 2.27
5393 5881 3.365472 AGTCTTTGCACTTGGGTTCTTT 58.635 40.909 0.00 0.00 0.00 2.52
5394 5882 3.018423 AGTCTTTGCACTTGGGTTCTT 57.982 42.857 0.00 0.00 0.00 2.52
5395 5883 2.689983 CAAGTCTTTGCACTTGGGTTCT 59.310 45.455 6.85 0.00 46.57 3.01
5396 5884 3.084070 CAAGTCTTTGCACTTGGGTTC 57.916 47.619 6.85 0.00 46.57 3.62
5402 5890 2.368439 TGCTGTCAAGTCTTTGCACTT 58.632 42.857 0.00 0.00 37.05 3.16
5403 5891 2.042686 TGCTGTCAAGTCTTTGCACT 57.957 45.000 0.00 0.00 34.21 4.40
5404 5892 2.724349 CTTGCTGTCAAGTCTTTGCAC 58.276 47.619 0.00 0.00 43.55 4.57
5414 5902 9.719355 TTAATTGTCTACTTATCTTGCTGTCAA 57.281 29.630 0.00 0.00 0.00 3.18
5415 5903 9.890629 ATTAATTGTCTACTTATCTTGCTGTCA 57.109 29.630 0.00 0.00 0.00 3.58
5419 5907 9.197694 CGCTATTAATTGTCTACTTATCTTGCT 57.802 33.333 0.00 0.00 0.00 3.91
5420 5908 8.436200 CCGCTATTAATTGTCTACTTATCTTGC 58.564 37.037 0.00 0.00 0.00 4.01
5421 5909 9.477484 ACCGCTATTAATTGTCTACTTATCTTG 57.523 33.333 0.00 0.00 0.00 3.02
5433 5921 9.826574 TGTCTAGAATTAACCGCTATTAATTGT 57.173 29.630 15.58 14.28 42.25 2.71
5441 5929 9.826574 ACAAAATATGTCTAGAATTAACCGCTA 57.173 29.630 0.00 0.00 37.96 4.26
5442 5930 8.732746 ACAAAATATGTCTAGAATTAACCGCT 57.267 30.769 0.00 0.00 37.96 5.52
5458 5946 3.091545 AGTGGCTGGTGGACAAAATATG 58.908 45.455 0.00 0.00 32.99 1.78
5459 5947 3.456380 AGTGGCTGGTGGACAAAATAT 57.544 42.857 0.00 0.00 32.99 1.28
5460 5948 2.969821 AGTGGCTGGTGGACAAAATA 57.030 45.000 0.00 0.00 32.99 1.40
5461 5949 2.086610 AAGTGGCTGGTGGACAAAAT 57.913 45.000 0.00 0.00 32.99 1.82
5462 5950 1.859302 AAAGTGGCTGGTGGACAAAA 58.141 45.000 0.00 0.00 32.99 2.44
5463 5951 2.173782 TCTAAAGTGGCTGGTGGACAAA 59.826 45.455 0.00 0.00 32.99 2.83
5464 5952 1.771854 TCTAAAGTGGCTGGTGGACAA 59.228 47.619 0.00 0.00 32.99 3.18
5465 5953 1.347707 CTCTAAAGTGGCTGGTGGACA 59.652 52.381 0.00 0.00 0.00 4.02
5466 5954 1.623811 TCTCTAAAGTGGCTGGTGGAC 59.376 52.381 0.00 0.00 0.00 4.02
5467 5955 2.024176 TCTCTAAAGTGGCTGGTGGA 57.976 50.000 0.00 0.00 0.00 4.02
5468 5956 4.696479 ATATCTCTAAAGTGGCTGGTGG 57.304 45.455 0.00 0.00 0.00 4.61
5469 5957 5.992217 GGTTATATCTCTAAAGTGGCTGGTG 59.008 44.000 0.00 0.00 0.00 4.17
5470 5958 5.665812 TGGTTATATCTCTAAAGTGGCTGGT 59.334 40.000 0.00 0.00 0.00 4.00
5471 5959 6.174720 TGGTTATATCTCTAAAGTGGCTGG 57.825 41.667 0.00 0.00 0.00 4.85
5472 5960 7.933577 TCATTGGTTATATCTCTAAAGTGGCTG 59.066 37.037 0.00 0.00 0.00 4.85
5473 5961 7.934120 GTCATTGGTTATATCTCTAAAGTGGCT 59.066 37.037 0.00 0.00 0.00 4.75
5474 5962 7.715249 TGTCATTGGTTATATCTCTAAAGTGGC 59.285 37.037 0.00 0.00 0.00 5.01
5475 5963 9.784531 ATGTCATTGGTTATATCTCTAAAGTGG 57.215 33.333 0.00 0.00 0.00 4.00
5498 5986 7.078249 TGGCCTAACTGACATATATCAATGT 57.922 36.000 3.32 0.00 42.75 2.71
5499 5987 7.164122 ACTGGCCTAACTGACATATATCAATG 58.836 38.462 3.32 0.00 0.00 2.82
5500 5988 7.321717 ACTGGCCTAACTGACATATATCAAT 57.678 36.000 3.32 0.00 0.00 2.57
5501 5989 6.747414 ACTGGCCTAACTGACATATATCAA 57.253 37.500 3.32 0.00 0.00 2.57
5502 5990 6.747414 AACTGGCCTAACTGACATATATCA 57.253 37.500 3.32 0.00 0.00 2.15
5503 5991 7.324178 CCTAACTGGCCTAACTGACATATATC 58.676 42.308 3.32 0.00 0.00 1.63
5504 5992 7.246171 CCTAACTGGCCTAACTGACATATAT 57.754 40.000 3.32 0.00 0.00 0.86
5505 5993 6.665992 CCTAACTGGCCTAACTGACATATA 57.334 41.667 3.32 0.00 0.00 0.86
5506 5994 5.552870 CCTAACTGGCCTAACTGACATAT 57.447 43.478 3.32 0.00 0.00 1.78
5508 5996 3.914426 CCTAACTGGCCTAACTGACAT 57.086 47.619 3.32 0.00 0.00 3.06
5520 6008 3.806625 CAATCCAATTGGCCTAACTGG 57.193 47.619 20.33 8.34 36.63 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.