Multiple sequence alignment - TraesCS2D01G293000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G293000 chr2D 100.000 6037 0 0 1 6037 375371218 375365182 0.000000e+00 11149.0
1 TraesCS2D01G293000 chr2D 97.552 286 5 2 156 440 172735252 172735536 7.030000e-134 488.0
2 TraesCS2D01G293000 chr2D 97.183 284 5 3 158 440 358591602 358591883 1.520000e-130 477.0
3 TraesCS2D01G293000 chr2D 95.533 291 11 2 154 443 470399108 470399397 1.190000e-126 464.0
4 TraesCS2D01G293000 chr2A 94.265 2511 78 34 3142 5642 507695236 507692782 0.000000e+00 3779.0
5 TraesCS2D01G293000 chr2A 97.722 1405 30 2 1301 2705 507697353 507695951 0.000000e+00 2416.0
6 TraesCS2D01G293000 chr2A 92.845 587 23 8 733 1308 507699162 507698584 0.000000e+00 833.0
7 TraesCS2D01G293000 chr2A 94.949 396 12 2 2771 3158 507695648 507695253 1.110000e-171 614.0
8 TraesCS2D01G293000 chr2A 86.505 289 24 5 438 720 507704449 507704170 2.730000e-78 303.0
9 TraesCS2D01G293000 chr2A 88.482 191 10 7 5852 6037 507692608 507692425 2.830000e-53 220.0
10 TraesCS2D01G293000 chr2A 94.667 75 4 0 5784 5858 507692704 507692630 3.820000e-22 117.0
11 TraesCS2D01G293000 chr2A 94.545 55 2 1 5696 5750 507692757 507692704 3.880000e-12 84.2
12 TraesCS2D01G293000 chr2A 89.474 57 3 3 3039 3094 723907658 723907712 1.090000e-07 69.4
13 TraesCS2D01G293000 chr2A 91.837 49 1 3 3039 3087 19043533 19043578 1.400000e-06 65.8
14 TraesCS2D01G293000 chr2B 93.644 2124 123 6 3071 5187 445689219 445687101 0.000000e+00 3164.0
15 TraesCS2D01G293000 chr2B 91.304 1449 65 32 552 1957 445691732 445690302 0.000000e+00 1921.0
16 TraesCS2D01G293000 chr2B 89.468 940 52 14 1962 2900 445690133 445689240 0.000000e+00 1144.0
17 TraesCS2D01G293000 chr2B 95.918 294 10 2 153 445 252416421 252416129 5.480000e-130 475.0
18 TraesCS2D01G293000 chr2B 87.845 362 12 4 5707 6037 445686550 445686190 4.380000e-106 396.0
19 TraesCS2D01G293000 chr2B 92.130 216 16 1 5397 5611 445686810 445686595 2.730000e-78 303.0
20 TraesCS2D01G293000 chr2B 95.570 158 7 0 5186 5343 445687070 445686913 2.790000e-63 254.0
21 TraesCS2D01G293000 chr2B 89.831 59 2 4 5640 5696 445694210 445694154 8.390000e-09 73.1
22 TraesCS2D01G293000 chr5D 96.886 289 7 2 156 444 120474850 120475136 3.270000e-132 483.0
23 TraesCS2D01G293000 chr5D 95.548 292 10 3 150 440 413283048 413282759 1.190000e-126 464.0
24 TraesCS2D01G293000 chr5D 87.879 66 4 4 5645 5708 358548770 358548707 2.330000e-09 75.0
25 TraesCS2D01G293000 chr5D 95.349 43 2 0 3039 3081 558587300 558587258 1.090000e-07 69.4
26 TraesCS2D01G293000 chr6D 96.503 286 8 2 156 440 237189429 237189713 7.080000e-129 472.0
27 TraesCS2D01G293000 chr6D 91.156 147 10 2 2893 3038 433481352 433481208 4.770000e-46 196.0
28 TraesCS2D01G293000 chr6D 94.118 51 2 1 5646 5696 249956875 249956924 6.490000e-10 76.8
29 TraesCS2D01G293000 chr6D 88.333 60 5 2 5638 5697 7460287 7460230 3.020000e-08 71.3
30 TraesCS2D01G293000 chr6A 95.848 289 10 2 156 443 202074455 202074168 3.300000e-127 466.0
31 TraesCS2D01G293000 chr6A 93.197 147 9 1 2893 3038 601961324 601961178 1.320000e-51 215.0
32 TraesCS2D01G293000 chr6A 94.118 51 1 1 5645 5693 38475526 38475576 6.490000e-10 76.8
33 TraesCS2D01G293000 chr3D 95.862 290 9 3 152 440 576855288 576855001 3.300000e-127 466.0
34 TraesCS2D01G293000 chr4A 92.517 147 11 0 2891 3037 160254630 160254776 1.700000e-50 211.0
35 TraesCS2D01G293000 chr4A 94.000 50 2 1 5647 5696 714589992 714590040 2.330000e-09 75.0
36 TraesCS2D01G293000 chr5B 92.517 147 10 1 2893 3039 581132829 581132974 6.130000e-50 209.0
37 TraesCS2D01G293000 chr3B 91.781 146 12 0 2893 3038 119087731 119087586 2.850000e-48 204.0
38 TraesCS2D01G293000 chr3B 91.096 146 13 0 2893 3038 136485996 136486141 1.330000e-46 198.0
39 TraesCS2D01G293000 chr7D 91.156 147 12 1 2893 3039 551607246 551607101 1.330000e-46 198.0
40 TraesCS2D01G293000 chr7D 90.604 149 11 2 2893 3041 551503355 551503210 1.720000e-45 195.0
41 TraesCS2D01G293000 chr7D 95.652 46 0 2 3039 3084 583063224 583063181 8.390000e-09 73.1
42 TraesCS2D01G293000 chr3A 78.505 214 25 10 2893 3087 623341718 623341929 2.960000e-23 121.0
43 TraesCS2D01G293000 chr6B 95.745 47 2 0 5650 5696 55999763 55999809 6.490000e-10 76.8
44 TraesCS2D01G293000 chrUn 92.157 51 2 2 3039 3087 49639902 49639852 3.020000e-08 71.3
45 TraesCS2D01G293000 chrUn 88.136 59 3 3 3039 3094 103532038 103531981 3.900000e-07 67.6
46 TraesCS2D01G293000 chr5A 89.474 57 4 2 5641 5696 295730781 295730836 3.020000e-08 71.3
47 TraesCS2D01G293000 chr1D 83.333 78 9 4 5618 5694 12225349 12225423 1.090000e-07 69.4
48 TraesCS2D01G293000 chr1B 90.741 54 1 3 3039 3091 77892284 77892234 1.090000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G293000 chr2D 375365182 375371218 6036 True 11149.000000 11149 100.000000 1 6037 1 chr2D.!!$R1 6036
1 TraesCS2D01G293000 chr2A 507692425 507699162 6737 True 1151.885714 3779 93.925000 733 6037 7 chr2A.!!$R2 5304
2 TraesCS2D01G293000 chr2B 445686190 445694210 8020 True 1036.442857 3164 91.398857 552 6037 7 chr2B.!!$R2 5485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.381089 AGCGGTATAGTGTGAGCGTC 59.619 55.000 0.00 0.0 38.75 5.19 F
740 2669 1.200519 TGCACATACCCTACCCTCAC 58.799 55.000 0.00 0.0 0.00 3.51 F
1879 5089 0.322098 TGGGTACTCAAATGGTGGCG 60.322 55.000 0.00 0.0 0.00 5.69 F
2739 6116 0.381801 CGCATACAGCATTTCCACCC 59.618 55.000 0.00 0.0 46.13 4.61 F
2782 6396 1.239968 CCCTGTTGCACCTGAAGAGC 61.240 60.000 0.00 0.0 0.00 4.09 F
3665 7326 2.874086 TCATACATCCATGCTGCTTTCG 59.126 45.455 0.00 0.0 0.00 3.46 F
4588 8250 0.037303 CTCCCCAGCACAATGTCTGT 59.963 55.000 10.36 0.0 39.56 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1087 3035 1.214062 AGCGCGATATAGCTCTGCC 59.786 57.895 12.10 0.0 39.98 4.85 R
2724 6101 0.039035 GTGGGGGTGGAAATGCTGTA 59.961 55.000 0.00 0.0 0.00 2.74 R
2762 6139 0.109342 CTCTTCAGGTGCAACAGGGT 59.891 55.000 3.64 0.0 39.98 4.34 R
3665 7326 0.905357 ATCCCTCACCTACAGCACAC 59.095 55.000 0.00 0.0 0.00 3.82 R
4169 7831 2.842208 TTGAAACCGCAAAGACACAG 57.158 45.000 0.00 0.0 0.00 3.66 R
4953 8615 0.319641 AAGAAAGCCGACCTCGTGAC 60.320 55.000 0.00 0.0 37.74 3.67 R
5923 9713 0.321671 GGCCTGTCTCAGCTGTTGTA 59.678 55.000 14.67 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.437085 AAATCCGGTCCCAGAATTCC 57.563 50.000 0.00 0.00 0.00 3.01
22 23 1.295020 AATCCGGTCCCAGAATTCCA 58.705 50.000 0.00 0.00 0.00 3.53
23 24 1.295020 ATCCGGTCCCAGAATTCCAA 58.705 50.000 0.00 0.00 0.00 3.53
24 25 1.068948 TCCGGTCCCAGAATTCCAAA 58.931 50.000 0.00 0.00 0.00 3.28
25 26 1.173913 CCGGTCCCAGAATTCCAAAC 58.826 55.000 0.65 0.00 0.00 2.93
26 27 1.546773 CCGGTCCCAGAATTCCAAACA 60.547 52.381 0.65 0.00 0.00 2.83
27 28 2.235016 CGGTCCCAGAATTCCAAACAA 58.765 47.619 0.65 0.00 0.00 2.83
28 29 2.625790 CGGTCCCAGAATTCCAAACAAA 59.374 45.455 0.65 0.00 0.00 2.83
29 30 3.552068 CGGTCCCAGAATTCCAAACAAAC 60.552 47.826 0.65 0.00 0.00 2.93
30 31 3.386402 GGTCCCAGAATTCCAAACAAACA 59.614 43.478 0.65 0.00 0.00 2.83
31 32 4.501400 GGTCCCAGAATTCCAAACAAACAG 60.501 45.833 0.65 0.00 0.00 3.16
32 33 3.640967 TCCCAGAATTCCAAACAAACAGG 59.359 43.478 0.65 0.00 0.00 4.00
33 34 3.244181 CCCAGAATTCCAAACAAACAGGG 60.244 47.826 0.65 0.00 0.00 4.45
34 35 3.392882 CAGAATTCCAAACAAACAGGGC 58.607 45.455 0.65 0.00 0.00 5.19
35 36 2.368548 AGAATTCCAAACAAACAGGGCC 59.631 45.455 0.65 0.00 0.00 5.80
36 37 2.101640 ATTCCAAACAAACAGGGCCT 57.898 45.000 0.00 0.00 0.00 5.19
37 38 1.872773 TTCCAAACAAACAGGGCCTT 58.127 45.000 1.32 0.00 0.00 4.35
38 39 2.757894 TCCAAACAAACAGGGCCTTA 57.242 45.000 1.32 0.00 0.00 2.69
39 40 2.593026 TCCAAACAAACAGGGCCTTAG 58.407 47.619 1.32 0.00 0.00 2.18
40 41 2.175931 TCCAAACAAACAGGGCCTTAGA 59.824 45.455 1.32 0.00 0.00 2.10
42 43 3.578282 CCAAACAAACAGGGCCTTAGATT 59.422 43.478 1.32 0.00 0.00 2.40
44 45 5.245075 CCAAACAAACAGGGCCTTAGATTTA 59.755 40.000 1.32 0.00 0.00 1.40
45 46 6.239458 CCAAACAAACAGGGCCTTAGATTTAA 60.239 38.462 1.32 0.00 0.00 1.52
46 47 5.977489 ACAAACAGGGCCTTAGATTTAAC 57.023 39.130 1.32 0.00 0.00 2.01
47 48 5.390387 ACAAACAGGGCCTTAGATTTAACA 58.610 37.500 1.32 0.00 0.00 2.41
48 49 5.243060 ACAAACAGGGCCTTAGATTTAACAC 59.757 40.000 1.32 0.00 0.00 3.32
50 51 5.193099 ACAGGGCCTTAGATTTAACACAT 57.807 39.130 1.32 0.00 0.00 3.21
51 52 4.949856 ACAGGGCCTTAGATTTAACACATG 59.050 41.667 1.32 0.00 0.00 3.21
52 53 4.949856 CAGGGCCTTAGATTTAACACATGT 59.050 41.667 1.32 0.00 0.00 3.21
53 54 4.949856 AGGGCCTTAGATTTAACACATGTG 59.050 41.667 24.25 24.25 0.00 3.21
55 56 5.594317 GGGCCTTAGATTTAACACATGTGAT 59.406 40.000 31.94 22.71 0.00 3.06
56 57 6.238759 GGGCCTTAGATTTAACACATGTGATC 60.239 42.308 31.94 22.02 0.00 2.92
57 58 6.422223 GCCTTAGATTTAACACATGTGATCG 58.578 40.000 31.94 11.84 0.00 3.69
58 59 6.422223 CCTTAGATTTAACACATGTGATCGC 58.578 40.000 31.94 14.75 0.00 4.58
62 63 6.855836 AGATTTAACACATGTGATCGCATTT 58.144 32.000 31.94 15.72 0.00 2.32
64 65 7.814107 AGATTTAACACATGTGATCGCATTTTT 59.186 29.630 31.94 14.32 0.00 1.94
65 66 8.978564 ATTTAACACATGTGATCGCATTTTTA 57.021 26.923 31.94 13.33 0.00 1.52
67 68 4.985413 ACACATGTGATCGCATTTTTAGG 58.015 39.130 31.94 9.42 0.00 2.69
68 69 4.699735 ACACATGTGATCGCATTTTTAGGA 59.300 37.500 31.94 0.00 0.00 2.94
69 70 5.357878 ACACATGTGATCGCATTTTTAGGAT 59.642 36.000 31.94 0.06 0.00 3.24
71 72 5.357878 ACATGTGATCGCATTTTTAGGATGT 59.642 36.000 19.05 9.49 0.00 3.06
72 73 6.542005 ACATGTGATCGCATTTTTAGGATGTA 59.458 34.615 19.05 0.00 0.00 2.29
73 74 7.229306 ACATGTGATCGCATTTTTAGGATGTAT 59.771 33.333 19.05 0.00 0.00 2.29
74 75 7.566760 TGTGATCGCATTTTTAGGATGTATT 57.433 32.000 4.45 0.00 0.00 1.89
76 77 8.556194 TGTGATCGCATTTTTAGGATGTATTAC 58.444 33.333 4.45 0.00 0.00 1.89
77 78 8.556194 GTGATCGCATTTTTAGGATGTATTACA 58.444 33.333 0.16 0.00 0.00 2.41
78 79 8.773645 TGATCGCATTTTTAGGATGTATTACAG 58.226 33.333 2.53 0.00 0.00 2.74
80 81 6.017440 TCGCATTTTTAGGATGTATTACAGGC 60.017 38.462 2.53 0.00 0.00 4.85
86 87 7.548196 TTTAGGATGTATTACAGGCTTTTCG 57.452 36.000 2.53 0.00 0.00 3.46
87 88 4.451900 AGGATGTATTACAGGCTTTTCGG 58.548 43.478 2.53 0.00 0.00 4.30
95 96 4.736739 GGCTTTTCGGCCCTACTT 57.263 55.556 0.00 0.00 45.92 2.24
98 99 1.616865 GGCTTTTCGGCCCTACTTTTT 59.383 47.619 0.00 0.00 45.92 1.94
99 100 2.821378 GGCTTTTCGGCCCTACTTTTTA 59.179 45.455 0.00 0.00 45.92 1.52
101 102 4.482386 GCTTTTCGGCCCTACTTTTTAAG 58.518 43.478 0.00 0.00 0.00 1.85
102 103 4.482386 CTTTTCGGCCCTACTTTTTAAGC 58.518 43.478 0.00 0.00 0.00 3.09
103 104 1.729284 TCGGCCCTACTTTTTAAGCG 58.271 50.000 0.00 0.00 0.00 4.68
104 105 0.730840 CGGCCCTACTTTTTAAGCGG 59.269 55.000 0.00 0.00 0.00 5.52
107 108 3.548770 GGCCCTACTTTTTAAGCGGTAT 58.451 45.455 0.00 0.00 0.00 2.73
108 109 4.707105 GGCCCTACTTTTTAAGCGGTATA 58.293 43.478 0.00 0.00 0.00 1.47
109 110 4.753610 GGCCCTACTTTTTAAGCGGTATAG 59.246 45.833 0.00 0.00 0.00 1.31
110 111 5.363101 GCCCTACTTTTTAAGCGGTATAGT 58.637 41.667 0.00 0.00 0.00 2.12
111 112 5.235831 GCCCTACTTTTTAAGCGGTATAGTG 59.764 44.000 0.00 0.00 0.00 2.74
113 114 6.257193 CCCTACTTTTTAAGCGGTATAGTGTG 59.743 42.308 0.00 0.00 0.00 3.82
114 115 7.037438 CCTACTTTTTAAGCGGTATAGTGTGA 58.963 38.462 0.00 0.00 0.00 3.58
115 116 6.963049 ACTTTTTAAGCGGTATAGTGTGAG 57.037 37.500 0.00 0.00 0.00 3.51
116 117 5.350640 ACTTTTTAAGCGGTATAGTGTGAGC 59.649 40.000 0.00 0.00 0.00 4.26
117 118 2.768833 TAAGCGGTATAGTGTGAGCG 57.231 50.000 0.00 0.00 39.48 5.03
118 119 0.815734 AAGCGGTATAGTGTGAGCGT 59.184 50.000 0.00 0.00 38.75 5.07
119 120 0.381089 AGCGGTATAGTGTGAGCGTC 59.619 55.000 0.00 0.00 38.75 5.19
121 122 1.468565 GCGGTATAGTGTGAGCGTCAA 60.469 52.381 0.00 0.00 38.75 3.18
122 123 2.182825 CGGTATAGTGTGAGCGTCAAC 58.817 52.381 0.00 0.00 0.00 3.18
124 125 3.064408 CGGTATAGTGTGAGCGTCAACTA 59.936 47.826 0.00 0.00 30.58 2.24
139 140 4.352887 GTCAACTACGAGGCATCTAAGAC 58.647 47.826 0.00 0.00 0.00 3.01
141 142 2.915349 ACTACGAGGCATCTAAGACGA 58.085 47.619 0.00 0.00 0.00 4.20
142 143 2.613133 ACTACGAGGCATCTAAGACGAC 59.387 50.000 0.00 0.00 0.00 4.34
143 144 1.752683 ACGAGGCATCTAAGACGACT 58.247 50.000 0.00 0.00 0.00 4.18
144 145 2.093106 ACGAGGCATCTAAGACGACTT 58.907 47.619 5.32 5.32 39.81 3.01
146 147 2.854777 CGAGGCATCTAAGACGACTTTG 59.145 50.000 5.28 4.04 37.53 2.77
147 148 3.673594 CGAGGCATCTAAGACGACTTTGT 60.674 47.826 5.28 0.00 37.53 2.83
150 151 3.994392 GGCATCTAAGACGACTTTGTCAA 59.006 43.478 5.28 0.00 41.41 3.18
151 152 4.631813 GGCATCTAAGACGACTTTGTCAAT 59.368 41.667 5.28 0.00 41.41 2.57
152 153 5.122396 GGCATCTAAGACGACTTTGTCAATT 59.878 40.000 5.28 0.00 41.41 2.32
153 154 6.348540 GGCATCTAAGACGACTTTGTCAATTT 60.349 38.462 5.28 0.00 41.41 1.82
155 156 7.571244 GCATCTAAGACGACTTTGTCAATTTCA 60.571 37.037 5.28 0.00 41.41 2.69
156 157 7.408132 TCTAAGACGACTTTGTCAATTTCAG 57.592 36.000 5.28 0.00 41.41 3.02
157 158 7.207383 TCTAAGACGACTTTGTCAATTTCAGA 58.793 34.615 5.28 0.00 41.41 3.27
158 159 5.659048 AGACGACTTTGTCAATTTCAGAC 57.341 39.130 0.00 0.00 41.41 3.51
159 160 5.360591 AGACGACTTTGTCAATTTCAGACT 58.639 37.500 0.00 0.00 41.41 3.24
161 162 6.421202 AGACGACTTTGTCAATTTCAGACTAC 59.579 38.462 0.00 0.00 41.41 2.73
162 163 5.465724 ACGACTTTGTCAATTTCAGACTACC 59.534 40.000 0.00 0.00 36.94 3.18
163 164 5.107065 CGACTTTGTCAATTTCAGACTACCC 60.107 44.000 0.00 0.00 36.94 3.69
164 165 5.690865 ACTTTGTCAATTTCAGACTACCCA 58.309 37.500 0.00 0.00 36.94 4.51
165 166 5.531287 ACTTTGTCAATTTCAGACTACCCAC 59.469 40.000 0.00 0.00 36.94 4.61
167 168 4.641396 TGTCAATTTCAGACTACCCACAG 58.359 43.478 0.00 0.00 36.94 3.66
169 170 4.452455 GTCAATTTCAGACTACCCACAGTG 59.548 45.833 0.00 0.00 33.29 3.66
170 171 3.703001 ATTTCAGACTACCCACAGTGG 57.297 47.619 13.35 13.35 37.25 4.00
182 183 3.543680 CCACAGTGGGAGTAACATAGG 57.456 52.381 12.40 0.00 32.67 2.57
183 184 2.838202 CCACAGTGGGAGTAACATAGGT 59.162 50.000 12.40 0.00 32.67 3.08
185 186 4.099573 CCACAGTGGGAGTAACATAGGTAG 59.900 50.000 12.40 0.00 32.67 3.18
186 187 4.710375 CACAGTGGGAGTAACATAGGTAGT 59.290 45.833 0.00 0.00 0.00 2.73
189 190 6.379417 ACAGTGGGAGTAACATAGGTAGTAAC 59.621 42.308 0.00 0.00 0.00 2.50
192 193 7.287235 AGTGGGAGTAACATAGGTAGTAACATC 59.713 40.741 0.00 0.00 0.00 3.06
193 194 7.069085 GTGGGAGTAACATAGGTAGTAACATCA 59.931 40.741 0.00 0.00 0.00 3.07
194 195 7.069085 TGGGAGTAACATAGGTAGTAACATCAC 59.931 40.741 0.00 0.00 0.00 3.06
195 196 7.069085 GGGAGTAACATAGGTAGTAACATCACA 59.931 40.741 0.00 0.00 0.00 3.58
196 197 7.919621 GGAGTAACATAGGTAGTAACATCACAC 59.080 40.741 0.00 0.00 0.00 3.82
198 199 8.978472 AGTAACATAGGTAGTAACATCACACAT 58.022 33.333 0.00 0.00 0.00 3.21
201 202 9.982651 AACATAGGTAGTAACATCACACATATC 57.017 33.333 0.00 0.00 0.00 1.63
202 203 9.368416 ACATAGGTAGTAACATCACACATATCT 57.632 33.333 0.00 0.00 0.00 1.98
205 206 8.410673 AGGTAGTAACATCACACATATCTAGG 57.589 38.462 0.00 0.00 0.00 3.02
206 207 8.005388 AGGTAGTAACATCACACATATCTAGGT 58.995 37.037 0.00 0.00 0.00 3.08
207 208 8.639761 GGTAGTAACATCACACATATCTAGGTT 58.360 37.037 0.00 0.00 0.00 3.50
224 225 7.373617 TCTAGGTTAAATAGATGATGTGGCA 57.626 36.000 0.00 0.00 0.00 4.92
227 228 7.281040 AGGTTAAATAGATGATGTGGCATTG 57.719 36.000 0.00 0.00 0.00 2.82
228 229 5.922544 GGTTAAATAGATGATGTGGCATTGC 59.077 40.000 0.00 0.00 0.00 3.56
229 230 6.461370 GGTTAAATAGATGATGTGGCATTGCA 60.461 38.462 11.39 0.00 0.00 4.08
230 231 5.601583 AAATAGATGATGTGGCATTGCAA 57.398 34.783 11.39 0.00 0.00 4.08
231 232 5.801531 AATAGATGATGTGGCATTGCAAT 57.198 34.783 5.99 5.99 0.00 3.56
232 233 6.904463 AATAGATGATGTGGCATTGCAATA 57.096 33.333 12.53 0.00 0.00 1.90
235 236 6.169557 AGATGATGTGGCATTGCAATAAAT 57.830 33.333 12.53 0.00 0.00 1.40
236 237 5.989168 AGATGATGTGGCATTGCAATAAATG 59.011 36.000 12.53 2.09 39.98 2.32
238 239 5.731591 TGATGTGGCATTGCAATAAATGAA 58.268 33.333 12.53 0.00 39.46 2.57
239 240 5.813157 TGATGTGGCATTGCAATAAATGAAG 59.187 36.000 12.53 0.00 39.46 3.02
240 241 5.402997 TGTGGCATTGCAATAAATGAAGA 57.597 34.783 12.53 0.00 39.46 2.87
242 243 6.228995 TGTGGCATTGCAATAAATGAAGAAA 58.771 32.000 12.53 0.00 39.46 2.52
243 244 6.369340 TGTGGCATTGCAATAAATGAAGAAAG 59.631 34.615 12.53 0.00 39.46 2.62
244 245 6.591062 GTGGCATTGCAATAAATGAAGAAAGA 59.409 34.615 12.53 0.00 39.46 2.52
245 246 6.814644 TGGCATTGCAATAAATGAAGAAAGAG 59.185 34.615 12.53 0.00 39.46 2.85
246 247 7.037438 GGCATTGCAATAAATGAAGAAAGAGA 58.963 34.615 12.53 0.00 39.46 3.10
247 248 7.709613 GGCATTGCAATAAATGAAGAAAGAGAT 59.290 33.333 12.53 0.00 39.46 2.75
249 250 9.797556 CATTGCAATAAATGAAGAAAGAGATGA 57.202 29.630 12.53 0.00 39.46 2.92
252 253 9.850628 TGCAATAAATGAAGAAAGAGATGAAAG 57.149 29.630 0.00 0.00 0.00 2.62
253 254 9.852091 GCAATAAATGAAGAAAGAGATGAAAGT 57.148 29.630 0.00 0.00 0.00 2.66
257 258 8.924511 AAATGAAGAAAGAGATGAAAGTGGTA 57.075 30.769 0.00 0.00 0.00 3.25
259 260 7.730364 TGAAGAAAGAGATGAAAGTGGTAAC 57.270 36.000 0.00 0.00 0.00 2.50
295 296 8.803397 ACTACTAGTATGAGTAACATCACACA 57.197 34.615 2.33 0.00 40.07 3.72
296 297 9.409918 ACTACTAGTATGAGTAACATCACACAT 57.590 33.333 2.33 0.00 40.07 3.21
302 303 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
303 304 8.982685 GTATGAGTAACATCACACATATCAAGG 58.017 37.037 0.00 0.00 40.07 3.61
304 305 5.817296 TGAGTAACATCACACATATCAAGGC 59.183 40.000 0.00 0.00 0.00 4.35
305 306 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
306 307 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
307 308 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
308 309 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
309 310 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
310 311 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
311 312 4.847198 TCACACATATCAAGGCAAGATGT 58.153 39.130 2.43 0.00 0.00 3.06
314 315 5.165911 CACATATCAAGGCAAGATGTGTC 57.834 43.478 15.13 0.00 43.18 3.67
316 317 6.051074 CACATATCAAGGCAAGATGTGTCTA 58.949 40.000 15.13 0.00 43.11 2.59
317 318 6.709397 CACATATCAAGGCAAGATGTGTCTAT 59.291 38.462 15.13 0.00 43.11 1.98
318 319 7.874528 CACATATCAAGGCAAGATGTGTCTATA 59.125 37.037 15.13 0.00 43.11 1.31
319 320 8.093307 ACATATCAAGGCAAGATGTGTCTATAG 58.907 37.037 13.16 0.00 43.11 1.31
320 321 4.697514 TCAAGGCAAGATGTGTCTATAGC 58.302 43.478 0.00 0.00 43.11 2.97
321 322 3.760580 AGGCAAGATGTGTCTATAGCC 57.239 47.619 0.00 0.00 41.69 3.93
324 325 4.901849 AGGCAAGATGTGTCTATAGCCTAA 59.098 41.667 13.74 0.00 46.63 2.69
325 326 5.545723 AGGCAAGATGTGTCTATAGCCTAAT 59.454 40.000 13.74 0.00 46.63 1.73
327 328 7.235606 AGGCAAGATGTGTCTATAGCCTAATAA 59.764 37.037 13.74 0.00 46.63 1.40
335 336 9.764363 TGTGTCTATAGCCTAATAAATGAAGTG 57.236 33.333 0.00 0.00 0.00 3.16
336 337 9.765795 GTGTCTATAGCCTAATAAATGAAGTGT 57.234 33.333 0.00 0.00 0.00 3.55
339 340 9.273016 TCTATAGCCTAATAAATGAAGTGTTGC 57.727 33.333 0.00 0.00 0.00 4.17
341 342 6.780457 AGCCTAATAAATGAAGTGTTGCAT 57.220 33.333 0.00 0.00 0.00 3.96
343 344 6.153340 AGCCTAATAAATGAAGTGTTGCATGT 59.847 34.615 0.00 0.00 0.00 3.21
344 345 6.813152 GCCTAATAAATGAAGTGTTGCATGTT 59.187 34.615 0.00 0.00 0.00 2.71
345 346 7.973388 GCCTAATAAATGAAGTGTTGCATGTTA 59.027 33.333 0.00 0.00 0.00 2.41
346 347 9.289303 CCTAATAAATGAAGTGTTGCATGTTAC 57.711 33.333 0.00 0.00 0.00 2.50
347 348 9.289303 CTAATAAATGAAGTGTTGCATGTTACC 57.711 33.333 0.00 0.00 0.00 2.85
349 350 3.980646 TGAAGTGTTGCATGTTACCAC 57.019 42.857 0.00 0.00 0.00 4.16
350 351 3.282885 TGAAGTGTTGCATGTTACCACA 58.717 40.909 0.00 0.00 37.31 4.17
351 352 3.066064 TGAAGTGTTGCATGTTACCACAC 59.934 43.478 7.36 7.36 35.03 3.82
352 353 2.649190 AGTGTTGCATGTTACCACACA 58.351 42.857 15.74 0.00 35.03 3.72
354 355 4.393834 AGTGTTGCATGTTACCACACATA 58.606 39.130 15.74 0.00 35.51 2.29
355 356 5.009631 AGTGTTGCATGTTACCACACATAT 58.990 37.500 15.74 0.00 35.51 1.78
356 357 5.094812 GTGTTGCATGTTACCACACATATG 58.905 41.667 10.02 0.00 35.51 1.78
357 358 4.764308 TGTTGCATGTTACCACACATATGT 59.236 37.500 1.41 1.41 40.80 2.29
358 359 5.242615 TGTTGCATGTTACCACACATATGTT 59.757 36.000 5.37 0.00 36.72 2.71
359 360 6.431234 TGTTGCATGTTACCACACATATGTTA 59.569 34.615 5.37 0.00 36.72 2.41
361 362 6.176896 TGCATGTTACCACACATATGTTACT 58.823 36.000 5.37 0.00 36.72 2.24
363 364 6.238374 GCATGTTACCACACATATGTTACTCC 60.238 42.308 5.37 0.00 36.72 3.85
364 365 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
365 366 3.926058 ACCACACATATGTTACTCCCC 57.074 47.619 5.37 0.00 36.72 4.81
366 367 3.186283 ACCACACATATGTTACTCCCCA 58.814 45.455 5.37 0.00 36.72 4.96
367 368 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
368 369 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
369 370 4.407621 CCACACATATGTTACTCCCCACTA 59.592 45.833 5.37 0.00 36.72 2.74
371 372 6.269077 CCACACATATGTTACTCCCCACTATA 59.731 42.308 5.37 0.00 36.72 1.31
372 373 7.378966 CACACATATGTTACTCCCCACTATAG 58.621 42.308 5.37 0.00 36.72 1.31
373 374 7.232737 CACACATATGTTACTCCCCACTATAGA 59.767 40.741 5.37 0.00 36.72 1.98
374 375 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
375 376 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
376 377 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
377 378 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
378 379 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
379 380 3.529216 ACTCCCCACTATAGAGGTAGC 57.471 52.381 14.29 0.00 31.70 3.58
381 382 3.206866 ACTCCCCACTATAGAGGTAGCAA 59.793 47.826 14.29 0.00 31.70 3.91
382 383 3.573695 TCCCCACTATAGAGGTAGCAAC 58.426 50.000 14.29 0.00 0.00 4.17
383 384 3.052414 TCCCCACTATAGAGGTAGCAACA 60.052 47.826 14.29 0.00 0.00 3.33
384 385 3.904339 CCCCACTATAGAGGTAGCAACAT 59.096 47.826 14.29 0.00 0.00 2.71
385 386 5.084519 CCCCACTATAGAGGTAGCAACATA 58.915 45.833 14.29 0.00 0.00 2.29
386 387 5.186021 CCCCACTATAGAGGTAGCAACATAG 59.814 48.000 14.29 0.43 0.00 2.23
387 388 6.010850 CCCACTATAGAGGTAGCAACATAGA 58.989 44.000 14.29 0.00 0.00 1.98
388 389 6.071840 CCCACTATAGAGGTAGCAACATAGAC 60.072 46.154 14.29 0.00 0.00 2.59
389 390 6.717540 CCACTATAGAGGTAGCAACATAGACT 59.282 42.308 6.78 0.00 0.00 3.24
391 392 8.941977 CACTATAGAGGTAGCAACATAGACTAG 58.058 40.741 6.78 0.00 0.00 2.57
392 393 8.662255 ACTATAGAGGTAGCAACATAGACTAGT 58.338 37.037 6.78 0.00 0.00 2.57
395 396 7.571080 AGAGGTAGCAACATAGACTAGTAAC 57.429 40.000 0.00 0.00 0.00 2.50
396 397 7.117397 AGAGGTAGCAACATAGACTAGTAACA 58.883 38.462 0.00 0.00 0.00 2.41
397 398 7.780745 AGAGGTAGCAACATAGACTAGTAACAT 59.219 37.037 0.00 0.00 0.00 2.71
398 399 7.717568 AGGTAGCAACATAGACTAGTAACATG 58.282 38.462 0.00 2.36 0.00 3.21
401 402 7.170393 AGCAACATAGACTAGTAACATGTCA 57.830 36.000 13.80 0.00 33.56 3.58
402 403 7.786030 AGCAACATAGACTAGTAACATGTCAT 58.214 34.615 13.80 0.00 33.56 3.06
403 404 7.708322 AGCAACATAGACTAGTAACATGTCATG 59.292 37.037 11.41 11.41 33.56 3.07
426 427 9.128404 CATGTTACTAGTCTATGTTAGTACCCA 57.872 37.037 0.00 0.00 33.39 4.51
427 428 9.878737 ATGTTACTAGTCTATGTTAGTACCCAT 57.121 33.333 0.00 0.00 33.39 4.00
428 429 9.705103 TGTTACTAGTCTATGTTAGTACCCATT 57.295 33.333 0.00 0.00 33.39 3.16
429 430 9.962783 GTTACTAGTCTATGTTAGTACCCATTG 57.037 37.037 0.00 0.00 33.39 2.82
430 431 9.705103 TTACTAGTCTATGTTAGTACCCATTGT 57.295 33.333 0.00 0.00 33.39 2.71
431 432 8.008513 ACTAGTCTATGTTAGTACCCATTGTG 57.991 38.462 0.00 0.00 0.00 3.33
432 433 6.235231 AGTCTATGTTAGTACCCATTGTGG 57.765 41.667 0.00 0.00 37.25 4.17
433 434 4.814771 GTCTATGTTAGTACCCATTGTGGC 59.185 45.833 0.00 0.00 35.79 5.01
435 436 5.900699 TCTATGTTAGTACCCATTGTGGCTA 59.099 40.000 0.00 0.00 35.79 3.93
436 437 4.481368 TGTTAGTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
437 438 3.841845 TGTTAGTACCCATTGTGGCTAGT 59.158 43.478 0.00 0.00 35.79 2.57
438 439 4.081309 TGTTAGTACCCATTGTGGCTAGTC 60.081 45.833 0.00 0.00 35.79 2.59
439 440 2.834113 AGTACCCATTGTGGCTAGTCT 58.166 47.619 0.00 0.00 35.79 3.24
441 442 1.656587 ACCCATTGTGGCTAGTCTCA 58.343 50.000 0.00 0.00 35.79 3.27
442 443 1.985159 ACCCATTGTGGCTAGTCTCAA 59.015 47.619 13.70 13.70 35.79 3.02
443 444 2.026822 ACCCATTGTGGCTAGTCTCAAG 60.027 50.000 16.13 6.65 35.79 3.02
444 445 2.237143 CCCATTGTGGCTAGTCTCAAGA 59.763 50.000 16.13 0.00 35.79 3.02
445 446 3.118112 CCCATTGTGGCTAGTCTCAAGAT 60.118 47.826 16.13 0.00 35.79 2.40
446 447 4.521146 CCATTGTGGCTAGTCTCAAGATT 58.479 43.478 16.13 0.00 0.00 2.40
447 448 4.574013 CCATTGTGGCTAGTCTCAAGATTC 59.426 45.833 16.13 0.00 0.00 2.52
449 450 4.727507 TGTGGCTAGTCTCAAGATTCTC 57.272 45.455 0.00 0.00 0.00 2.87
450 451 4.348486 TGTGGCTAGTCTCAAGATTCTCT 58.652 43.478 0.00 0.00 0.00 3.10
451 452 4.400884 TGTGGCTAGTCTCAAGATTCTCTC 59.599 45.833 0.00 0.00 0.00 3.20
453 454 3.880490 GGCTAGTCTCAAGATTCTCTCGA 59.120 47.826 0.00 0.00 0.00 4.04
454 455 4.336993 GGCTAGTCTCAAGATTCTCTCGAA 59.663 45.833 0.00 0.00 0.00 3.71
455 456 5.163602 GGCTAGTCTCAAGATTCTCTCGAAA 60.164 44.000 0.00 0.00 31.91 3.46
457 458 6.809196 GCTAGTCTCAAGATTCTCTCGAAAAA 59.191 38.462 0.00 0.00 31.91 1.94
492 493 9.762933 ATGGGCAATTTATAAATATGTGTGTTC 57.237 29.630 11.07 3.83 0.00 3.18
493 494 8.753133 TGGGCAATTTATAAATATGTGTGTTCA 58.247 29.630 11.07 5.89 0.00 3.18
494 495 9.762933 GGGCAATTTATAAATATGTGTGTTCAT 57.237 29.630 11.07 0.00 0.00 2.57
506 507 5.728637 TGTGTGTTCATAGAGATGAGTGT 57.271 39.130 0.00 0.00 43.03 3.55
507 508 5.473039 TGTGTGTTCATAGAGATGAGTGTG 58.527 41.667 0.00 0.00 43.03 3.82
508 509 5.011023 TGTGTGTTCATAGAGATGAGTGTGT 59.989 40.000 0.00 0.00 43.03 3.72
509 510 5.347093 GTGTGTTCATAGAGATGAGTGTGTG 59.653 44.000 0.00 0.00 43.03 3.82
510 511 4.328440 GTGTTCATAGAGATGAGTGTGTGC 59.672 45.833 0.00 0.00 43.03 4.57
511 512 3.808466 TCATAGAGATGAGTGTGTGCC 57.192 47.619 0.00 0.00 37.15 5.01
514 515 1.935799 AGAGATGAGTGTGTGCCTCT 58.064 50.000 0.00 0.00 0.00 3.69
515 516 3.093057 AGAGATGAGTGTGTGCCTCTA 57.907 47.619 0.00 0.00 30.13 2.43
516 517 3.641046 AGAGATGAGTGTGTGCCTCTAT 58.359 45.455 0.00 0.00 30.13 1.98
517 518 3.384146 AGAGATGAGTGTGTGCCTCTATG 59.616 47.826 0.00 0.00 30.13 2.23
518 519 3.102972 AGATGAGTGTGTGCCTCTATGT 58.897 45.455 0.00 0.00 0.00 2.29
519 520 4.281657 AGATGAGTGTGTGCCTCTATGTA 58.718 43.478 0.00 0.00 0.00 2.29
520 521 4.711846 AGATGAGTGTGTGCCTCTATGTAA 59.288 41.667 0.00 0.00 0.00 2.41
521 522 4.456280 TGAGTGTGTGCCTCTATGTAAG 57.544 45.455 0.00 0.00 0.00 2.34
523 524 1.927174 GTGTGTGCCTCTATGTAAGCG 59.073 52.381 0.00 0.00 0.00 4.68
524 525 1.548719 TGTGTGCCTCTATGTAAGCGT 59.451 47.619 0.00 0.00 0.00 5.07
525 526 2.194271 GTGTGCCTCTATGTAAGCGTC 58.806 52.381 0.00 0.00 0.00 5.19
526 527 2.100197 TGTGCCTCTATGTAAGCGTCT 58.900 47.619 0.00 0.00 0.00 4.18
528 529 2.100197 TGCCTCTATGTAAGCGTCTGT 58.900 47.619 0.00 0.00 0.00 3.41
530 531 3.697542 TGCCTCTATGTAAGCGTCTGTTA 59.302 43.478 0.00 0.00 0.00 2.41
531 532 4.341235 TGCCTCTATGTAAGCGTCTGTTAT 59.659 41.667 0.00 0.00 0.00 1.89
533 534 5.507482 GCCTCTATGTAAGCGTCTGTTATGA 60.507 44.000 0.00 0.00 0.00 2.15
534 535 6.682746 CCTCTATGTAAGCGTCTGTTATGAT 58.317 40.000 0.00 0.00 0.00 2.45
537 538 7.489160 TCTATGTAAGCGTCTGTTATGATTGT 58.511 34.615 0.00 0.00 0.00 2.71
538 539 8.626526 TCTATGTAAGCGTCTGTTATGATTGTA 58.373 33.333 0.00 0.00 0.00 2.41
539 540 6.880822 TGTAAGCGTCTGTTATGATTGTAC 57.119 37.500 0.00 0.00 0.00 2.90
540 541 6.627243 TGTAAGCGTCTGTTATGATTGTACT 58.373 36.000 0.00 0.00 0.00 2.73
541 542 6.530181 TGTAAGCGTCTGTTATGATTGTACTG 59.470 38.462 0.00 0.00 0.00 2.74
542 543 5.073311 AGCGTCTGTTATGATTGTACTGT 57.927 39.130 0.00 0.00 0.00 3.55
544 545 4.625742 GCGTCTGTTATGATTGTACTGTGT 59.374 41.667 0.00 0.00 0.00 3.72
545 546 5.120208 GCGTCTGTTATGATTGTACTGTGTT 59.880 40.000 0.00 0.00 0.00 3.32
547 548 7.227461 CGTCTGTTATGATTGTACTGTGTTTC 58.773 38.462 0.00 0.00 0.00 2.78
548 549 7.116376 CGTCTGTTATGATTGTACTGTGTTTCT 59.884 37.037 0.00 0.00 0.00 2.52
549 550 8.774586 GTCTGTTATGATTGTACTGTGTTTCTT 58.225 33.333 0.00 0.00 0.00 2.52
550 551 9.337396 TCTGTTATGATTGTACTGTGTTTCTTT 57.663 29.630 0.00 0.00 0.00 2.52
552 553 9.114952 TGTTATGATTGTACTGTGTTTCTTTGA 57.885 29.630 0.00 0.00 0.00 2.69
553 554 9.944663 GTTATGATTGTACTGTGTTTCTTTGAA 57.055 29.630 0.00 0.00 0.00 2.69
561 2489 9.391006 TGTACTGTGTTTCTTTGAAATAGACTT 57.609 29.630 0.00 0.00 0.00 3.01
623 2551 3.921677 TCTAAGGTTCACGTCACAATCC 58.078 45.455 0.00 0.00 0.00 3.01
630 2558 5.011329 AGGTTCACGTCACAATCCTAAACTA 59.989 40.000 0.00 0.00 0.00 2.24
631 2559 5.873164 GGTTCACGTCACAATCCTAAACTAT 59.127 40.000 0.00 0.00 0.00 2.12
632 2560 6.183360 GGTTCACGTCACAATCCTAAACTATG 60.183 42.308 0.00 0.00 0.00 2.23
633 2561 6.275494 TCACGTCACAATCCTAAACTATGA 57.725 37.500 0.00 0.00 0.00 2.15
674 2603 5.444122 CATGAAACTCTGAAAACGTTCTCC 58.556 41.667 0.00 0.00 34.60 3.71
677 2606 5.293569 TGAAACTCTGAAAACGTTCTCCTTC 59.706 40.000 0.00 2.04 34.60 3.46
688 2617 9.383462 GAAAACGTTCTCCTTCTTAAAAGAATC 57.617 33.333 0.00 0.00 43.52 2.52
690 2619 8.678593 AACGTTCTCCTTCTTAAAAGAATCTT 57.321 30.769 5.65 0.00 43.52 2.40
692 2621 9.774413 ACGTTCTCCTTCTTAAAAGAATCTTAA 57.226 29.630 5.65 0.00 43.52 1.85
735 2664 8.482943 TGTTGATATATATGCACATACCCTACC 58.517 37.037 0.00 0.00 0.00 3.18
736 2665 7.612065 TGATATATATGCACATACCCTACCC 57.388 40.000 0.00 0.00 0.00 3.69
737 2666 7.370238 TGATATATATGCACATACCCTACCCT 58.630 38.462 0.00 0.00 0.00 4.34
738 2667 7.509318 TGATATATATGCACATACCCTACCCTC 59.491 40.741 0.00 0.00 0.00 4.30
739 2668 2.190398 ATGCACATACCCTACCCTCA 57.810 50.000 0.00 0.00 0.00 3.86
740 2669 1.200519 TGCACATACCCTACCCTCAC 58.799 55.000 0.00 0.00 0.00 3.51
741 2670 1.273609 TGCACATACCCTACCCTCACT 60.274 52.381 0.00 0.00 0.00 3.41
742 2671 1.838077 GCACATACCCTACCCTCACTT 59.162 52.381 0.00 0.00 0.00 3.16
745 2674 4.543689 CACATACCCTACCCTCACTTCTA 58.456 47.826 0.00 0.00 0.00 2.10
767 2696 5.718649 ACTATGAACGTATGCACACATTC 57.281 39.130 0.00 0.00 37.74 2.67
775 2704 5.043903 ACGTATGCACACATTCTATCACTC 58.956 41.667 0.00 0.00 37.74 3.51
782 2711 4.565962 CACACATTCTATCACTCTGAGCAC 59.434 45.833 4.19 0.00 0.00 4.40
783 2712 4.221482 ACACATTCTATCACTCTGAGCACA 59.779 41.667 4.19 0.00 0.00 4.57
786 2715 6.982724 CACATTCTATCACTCTGAGCACATTA 59.017 38.462 4.19 0.00 0.00 1.90
787 2716 7.656542 CACATTCTATCACTCTGAGCACATTAT 59.343 37.037 4.19 0.00 0.00 1.28
788 2717 7.871973 ACATTCTATCACTCTGAGCACATTATC 59.128 37.037 4.19 0.00 0.00 1.75
789 2718 7.594351 TTCTATCACTCTGAGCACATTATCT 57.406 36.000 4.19 0.00 0.00 1.98
790 2719 7.594351 TCTATCACTCTGAGCACATTATCTT 57.406 36.000 4.19 0.00 0.00 2.40
791 2720 7.656412 TCTATCACTCTGAGCACATTATCTTC 58.344 38.462 4.19 0.00 0.00 2.87
794 2723 5.420104 TCACTCTGAGCACATTATCTTCAGA 59.580 40.000 4.19 2.91 0.00 3.27
795 2724 6.097981 TCACTCTGAGCACATTATCTTCAGAT 59.902 38.462 4.19 0.00 38.51 2.90
796 2725 6.762187 CACTCTGAGCACATTATCTTCAGATT 59.238 38.462 4.19 0.00 36.05 2.40
797 2726 6.762187 ACTCTGAGCACATTATCTTCAGATTG 59.238 38.462 4.19 0.00 36.05 2.67
798 2727 6.881570 TCTGAGCACATTATCTTCAGATTGA 58.118 36.000 0.00 0.00 36.05 2.57
799 2728 6.985059 TCTGAGCACATTATCTTCAGATTGAG 59.015 38.462 0.00 0.00 36.05 3.02
866 2814 4.545610 TCTCAATTGACCGATTTGCAAAC 58.454 39.130 15.41 7.79 0.00 2.93
879 2827 5.344665 CGATTTGCAAACGTGGAAAACATAT 59.655 36.000 15.41 0.00 46.51 1.78
1070 3018 1.304052 CCCGAGCATTCACCCCAAA 60.304 57.895 0.00 0.00 0.00 3.28
1184 3132 2.747855 CAAAGACTGCTCGCCCCC 60.748 66.667 0.00 0.00 0.00 5.40
1185 3133 4.394712 AAAGACTGCTCGCCCCCG 62.395 66.667 0.00 0.00 0.00 5.73
1365 4551 1.590792 CGTATCGGCCGAGGTTTCC 60.591 63.158 33.87 15.03 0.00 3.13
1702 4888 4.546674 TCCCTCAGCAGTCAGTATAATCA 58.453 43.478 0.00 0.00 0.00 2.57
1879 5089 0.322098 TGGGTACTCAAATGGTGGCG 60.322 55.000 0.00 0.00 0.00 5.69
1883 5093 3.131396 GGTACTCAAATGGTGGCGATAG 58.869 50.000 0.00 0.00 0.00 2.08
1937 5147 7.694886 GGTAACAAATCTCATACTAGTTTGGC 58.305 38.462 12.61 0.66 34.87 4.52
1958 5168 3.127721 GCCTGCTCTTTCATGGTAACTTC 59.872 47.826 0.00 0.00 37.61 3.01
2076 5450 1.867233 CGTCAAATATCCAAGGAGGCG 59.133 52.381 0.00 0.00 37.29 5.52
2484 5858 6.252599 TGAGCCTATTCAGGTATCACAATT 57.747 37.500 0.00 0.00 44.68 2.32
2682 6057 9.573166 TTAATCATTTGTCCTCTGAAGAAAAGA 57.427 29.630 0.00 0.00 0.00 2.52
2683 6058 8.469309 AATCATTTGTCCTCTGAAGAAAAGAA 57.531 30.769 0.00 0.00 0.00 2.52
2712 6089 6.072112 ACGTGCACATCTTCTTTTACATTT 57.928 33.333 18.64 0.00 0.00 2.32
2715 6092 6.086765 CGTGCACATCTTCTTTTACATTTGAC 59.913 38.462 18.64 0.00 0.00 3.18
2720 6097 5.934935 TCTTCTTTTACATTTGACGGGAC 57.065 39.130 0.00 0.00 0.00 4.46
2736 6113 1.378531 GGACGCATACAGCATTTCCA 58.621 50.000 0.00 0.00 46.13 3.53
2739 6116 0.381801 CGCATACAGCATTTCCACCC 59.618 55.000 0.00 0.00 46.13 4.61
2745 6122 2.683572 GCATTTCCACCCCCACCC 60.684 66.667 0.00 0.00 0.00 4.61
2782 6396 1.239968 CCCTGTTGCACCTGAAGAGC 61.240 60.000 0.00 0.00 0.00 4.09
2855 6469 9.645059 TGTAGCTGTATAGAAGCAAATATCATC 57.355 33.333 0.00 0.00 43.37 2.92
2858 6472 9.736414 AGCTGTATAGAAGCAAATATCATCAAT 57.264 29.630 9.44 0.00 43.37 2.57
3158 6814 9.558396 TGTATCATCATGTCTTATTGCATGTTA 57.442 29.630 0.00 0.00 42.09 2.41
3478 7139 5.188751 GGTTTGGATGATCATGGGGTTTTAA 59.811 40.000 14.30 0.00 0.00 1.52
3665 7326 2.874086 TCATACATCCATGCTGCTTTCG 59.126 45.455 0.00 0.00 0.00 3.46
3702 7363 3.057526 GGGATAAACCAAGTGCAGTTCAC 60.058 47.826 3.08 0.00 42.40 3.18
3939 7601 4.083324 ACATTGGTGCAGAATCTGTAAACG 60.083 41.667 12.29 0.00 33.43 3.60
4169 7831 4.589908 ACCTGTGGTGTATCATTTCCTTC 58.410 43.478 0.00 0.00 32.98 3.46
4397 8059 7.554835 AGATGTTATTTTCCGGTACAATTGCTA 59.445 33.333 5.05 0.00 0.00 3.49
4588 8250 0.037303 CTCCCCAGCACAATGTCTGT 59.963 55.000 10.36 0.00 39.56 3.41
4835 8497 8.908903 AGTATCGTTCTTCAGAGATTTCTATGT 58.091 33.333 2.44 0.00 36.62 2.29
4953 8615 1.436983 GGGCGGTAAATTGCGAGAGG 61.437 60.000 0.00 0.00 0.00 3.69
5088 8750 3.881952 ATGCAGACGTTGAGCCGCA 62.882 57.895 0.00 0.00 0.00 5.69
5170 8832 1.302511 GTCGGCCAGAAAAGCTCCA 60.303 57.895 2.24 0.00 0.00 3.86
5171 8833 0.678048 GTCGGCCAGAAAAGCTCCAT 60.678 55.000 2.24 0.00 0.00 3.41
5257 8951 2.350192 TGCAGTTAACGATAATGCCACG 59.650 45.455 12.60 0.00 36.04 4.94
5294 8988 9.752961 TCAGCAAATTAATGGTATGAAATGATG 57.247 29.630 0.00 0.00 0.00 3.07
5450 9194 1.695813 TGCCGAAACAATGCAAATCG 58.304 45.000 0.00 0.00 30.85 3.34
5465 9209 3.128589 GCAAATCGGAAAGTTGGCATCTA 59.871 43.478 0.00 0.00 0.00 1.98
5504 9249 2.008268 GCAACACAGGCACACAGCTT 62.008 55.000 0.00 0.00 44.79 3.74
5601 9346 8.836268 TGGGCAATATTTACTTTAGTATACGG 57.164 34.615 0.00 0.00 0.00 4.02
5610 9369 8.830201 TTTACTTTAGTATACGGAAAAGCACA 57.170 30.769 19.61 9.27 33.25 4.57
5611 9370 8.830201 TTACTTTAGTATACGGAAAAGCACAA 57.170 30.769 19.61 12.70 33.25 3.33
5612 9371 7.360575 ACTTTAGTATACGGAAAAGCACAAG 57.639 36.000 19.61 6.52 33.25 3.16
5613 9372 5.789710 TTAGTATACGGAAAAGCACAAGC 57.210 39.130 0.00 0.00 42.56 4.01
5614 9373 3.670625 AGTATACGGAAAAGCACAAGCA 58.329 40.909 0.00 0.00 45.49 3.91
5615 9374 2.989422 ATACGGAAAAGCACAAGCAC 57.011 45.000 0.00 0.00 45.49 4.40
5616 9375 0.584396 TACGGAAAAGCACAAGCACG 59.416 50.000 0.00 0.00 45.49 5.34
5617 9376 1.355210 CGGAAAAGCACAAGCACGT 59.645 52.632 0.00 0.00 45.49 4.49
5618 9377 0.929824 CGGAAAAGCACAAGCACGTG 60.930 55.000 12.28 12.28 45.49 4.49
5619 9378 0.100503 GGAAAAGCACAAGCACGTGT 59.899 50.000 18.38 0.68 45.49 4.49
5658 9417 8.658499 AACAAGTAATGATAATAACGTCCTCC 57.342 34.615 0.00 0.00 0.00 4.30
5659 9418 7.215085 ACAAGTAATGATAATAACGTCCTCCC 58.785 38.462 0.00 0.00 0.00 4.30
5660 9419 7.070821 ACAAGTAATGATAATAACGTCCTCCCT 59.929 37.037 0.00 0.00 0.00 4.20
5661 9420 7.229581 AGTAATGATAATAACGTCCTCCCTC 57.770 40.000 0.00 0.00 0.00 4.30
5662 9421 7.011382 AGTAATGATAATAACGTCCTCCCTCT 58.989 38.462 0.00 0.00 0.00 3.69
5663 9422 5.730296 ATGATAATAACGTCCTCCCTCTG 57.270 43.478 0.00 0.00 0.00 3.35
5664 9423 4.543689 TGATAATAACGTCCTCCCTCTGT 58.456 43.478 0.00 0.00 0.00 3.41
5665 9424 4.583489 TGATAATAACGTCCTCCCTCTGTC 59.417 45.833 0.00 0.00 0.00 3.51
5666 9425 1.777941 ATAACGTCCTCCCTCTGTCC 58.222 55.000 0.00 0.00 0.00 4.02
5667 9426 0.324091 TAACGTCCTCCCTCTGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
5668 9427 2.037367 CGTCCTCCCTCTGTCCCA 59.963 66.667 0.00 0.00 0.00 4.37
5669 9428 1.381872 CGTCCTCCCTCTGTCCCAT 60.382 63.158 0.00 0.00 0.00 4.00
5670 9429 0.106167 CGTCCTCCCTCTGTCCCATA 60.106 60.000 0.00 0.00 0.00 2.74
5671 9430 1.688311 CGTCCTCCCTCTGTCCCATAA 60.688 57.143 0.00 0.00 0.00 1.90
5672 9431 2.695585 GTCCTCCCTCTGTCCCATAAT 58.304 52.381 0.00 0.00 0.00 1.28
5673 9432 3.754172 CGTCCTCCCTCTGTCCCATAATA 60.754 52.174 0.00 0.00 0.00 0.98
5675 9434 5.590818 GTCCTCCCTCTGTCCCATAATATA 58.409 45.833 0.00 0.00 0.00 0.86
5676 9435 6.023603 GTCCTCCCTCTGTCCCATAATATAA 58.976 44.000 0.00 0.00 0.00 0.98
5677 9436 6.155393 GTCCTCCCTCTGTCCCATAATATAAG 59.845 46.154 0.00 0.00 0.00 1.73
5678 9437 6.047960 TCCTCCCTCTGTCCCATAATATAAGA 59.952 42.308 0.00 0.00 0.00 2.10
5679 9438 6.382570 CCTCCCTCTGTCCCATAATATAAGAG 59.617 46.154 0.00 0.00 0.00 2.85
5680 9439 6.875469 TCCCTCTGTCCCATAATATAAGAGT 58.125 40.000 0.00 0.00 0.00 3.24
5681 9440 6.726299 TCCCTCTGTCCCATAATATAAGAGTG 59.274 42.308 0.00 0.00 0.00 3.51
5682 9441 6.498651 CCCTCTGTCCCATAATATAAGAGTGT 59.501 42.308 0.00 0.00 0.00 3.55
5683 9442 7.016661 CCCTCTGTCCCATAATATAAGAGTGTT 59.983 40.741 0.00 0.00 0.00 3.32
5684 9443 8.432805 CCTCTGTCCCATAATATAAGAGTGTTT 58.567 37.037 0.00 0.00 0.00 2.83
5685 9444 9.838339 CTCTGTCCCATAATATAAGAGTGTTTT 57.162 33.333 0.00 0.00 0.00 2.43
5688 9447 9.967451 TGTCCCATAATATAAGAGTGTTTTTGA 57.033 29.630 0.00 0.00 0.00 2.69
5690 9449 9.967451 TCCCATAATATAAGAGTGTTTTTGACA 57.033 29.630 0.00 0.00 35.42 3.58
5703 9462 6.312399 TGTTTTTGACACTACATCATCACC 57.688 37.500 0.00 0.00 32.00 4.02
5704 9463 5.825151 TGTTTTTGACACTACATCATCACCA 59.175 36.000 0.00 0.00 32.00 4.17
5748 9507 4.358851 GCAATGTACAAAGCACTTGTTCA 58.641 39.130 15.55 10.50 46.49 3.18
5797 9556 7.994911 ACTATGAACTCCAGAAATATGCAATCA 59.005 33.333 0.00 0.00 0.00 2.57
5862 9649 1.599518 TGGCCCTAGCAACACAACG 60.600 57.895 0.00 0.00 42.56 4.10
5923 9713 8.229253 TCAATCTTGCATATTGAACAGCTTAT 57.771 30.769 17.93 0.00 39.70 1.73
6032 9824 0.743701 CAGCTGAGTGCCATCCAGAC 60.744 60.000 8.42 0.00 44.23 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.118038 TGGAATTCTGGGACCGGATTTAG 60.118 47.826 9.46 0.78 0.00 1.85
1 2 2.847449 TGGAATTCTGGGACCGGATTTA 59.153 45.455 9.46 0.00 0.00 1.40
3 4 1.295020 TGGAATTCTGGGACCGGATT 58.705 50.000 9.46 0.00 0.00 3.01
4 5 1.295020 TTGGAATTCTGGGACCGGAT 58.705 50.000 9.46 0.00 0.00 4.18
6 7 1.173913 GTTTGGAATTCTGGGACCGG 58.826 55.000 0.00 0.00 0.00 5.28
7 8 1.904287 TGTTTGGAATTCTGGGACCG 58.096 50.000 5.23 0.00 0.00 4.79
8 9 3.386402 TGTTTGTTTGGAATTCTGGGACC 59.614 43.478 5.23 0.00 0.00 4.46
9 10 4.501400 CCTGTTTGTTTGGAATTCTGGGAC 60.501 45.833 5.23 0.77 0.00 4.46
10 11 3.640967 CCTGTTTGTTTGGAATTCTGGGA 59.359 43.478 5.23 0.00 0.00 4.37
11 12 3.244181 CCCTGTTTGTTTGGAATTCTGGG 60.244 47.826 5.23 0.00 0.00 4.45
12 13 3.803368 GCCCTGTTTGTTTGGAATTCTGG 60.803 47.826 5.23 0.00 0.00 3.86
14 15 2.368548 GGCCCTGTTTGTTTGGAATTCT 59.631 45.455 5.23 0.00 0.00 2.40
15 16 2.368548 AGGCCCTGTTTGTTTGGAATTC 59.631 45.455 0.00 0.00 0.00 2.17
16 17 2.407562 AGGCCCTGTTTGTTTGGAATT 58.592 42.857 0.00 0.00 0.00 2.17
17 18 2.101640 AGGCCCTGTTTGTTTGGAAT 57.898 45.000 0.00 0.00 0.00 3.01
18 19 1.872773 AAGGCCCTGTTTGTTTGGAA 58.127 45.000 0.00 0.00 0.00 3.53
19 20 2.175931 TCTAAGGCCCTGTTTGTTTGGA 59.824 45.455 0.00 0.00 0.00 3.53
21 22 4.871933 AATCTAAGGCCCTGTTTGTTTG 57.128 40.909 0.00 0.00 0.00 2.93
22 23 6.325286 TGTTAAATCTAAGGCCCTGTTTGTTT 59.675 34.615 0.00 0.00 0.00 2.83
23 24 5.836358 TGTTAAATCTAAGGCCCTGTTTGTT 59.164 36.000 0.00 0.00 0.00 2.83
24 25 5.243060 GTGTTAAATCTAAGGCCCTGTTTGT 59.757 40.000 0.00 0.00 0.00 2.83
25 26 5.242838 TGTGTTAAATCTAAGGCCCTGTTTG 59.757 40.000 0.00 0.00 0.00 2.93
26 27 5.390387 TGTGTTAAATCTAAGGCCCTGTTT 58.610 37.500 0.00 0.00 0.00 2.83
27 28 4.993028 TGTGTTAAATCTAAGGCCCTGTT 58.007 39.130 0.00 0.00 0.00 3.16
28 29 4.650972 TGTGTTAAATCTAAGGCCCTGT 57.349 40.909 0.00 0.00 0.00 4.00
29 30 4.949856 ACATGTGTTAAATCTAAGGCCCTG 59.050 41.667 0.00 0.00 0.00 4.45
30 31 4.949856 CACATGTGTTAAATCTAAGGCCCT 59.050 41.667 18.03 0.00 0.00 5.19
31 32 4.947388 TCACATGTGTTAAATCTAAGGCCC 59.053 41.667 24.63 0.00 0.00 5.80
32 33 6.511767 CGATCACATGTGTTAAATCTAAGGCC 60.512 42.308 24.63 0.00 0.00 5.19
33 34 6.422223 CGATCACATGTGTTAAATCTAAGGC 58.578 40.000 24.63 1.00 0.00 4.35
34 35 6.037062 TGCGATCACATGTGTTAAATCTAAGG 59.963 38.462 24.63 8.98 0.00 2.69
35 36 7.003939 TGCGATCACATGTGTTAAATCTAAG 57.996 36.000 24.63 9.28 0.00 2.18
36 37 6.976636 TGCGATCACATGTGTTAAATCTAA 57.023 33.333 24.63 8.66 0.00 2.10
37 38 7.552458 AATGCGATCACATGTGTTAAATCTA 57.448 32.000 24.63 11.99 0.00 1.98
38 39 6.441093 AATGCGATCACATGTGTTAAATCT 57.559 33.333 24.63 4.52 0.00 2.40
39 40 7.510428 AAAATGCGATCACATGTGTTAAATC 57.490 32.000 24.63 18.02 0.00 2.17
40 41 7.887996 AAAAATGCGATCACATGTGTTAAAT 57.112 28.000 24.63 11.39 0.00 1.40
42 43 7.026562 CCTAAAAATGCGATCACATGTGTTAA 58.973 34.615 24.63 6.96 0.00 2.01
44 45 5.182950 TCCTAAAAATGCGATCACATGTGTT 59.817 36.000 24.63 17.20 0.00 3.32
45 46 4.699735 TCCTAAAAATGCGATCACATGTGT 59.300 37.500 24.63 12.64 0.00 3.72
46 47 5.233957 TCCTAAAAATGCGATCACATGTG 57.766 39.130 20.18 20.18 0.00 3.21
47 48 5.357878 ACATCCTAAAAATGCGATCACATGT 59.642 36.000 0.00 0.00 0.00 3.21
48 49 5.824429 ACATCCTAAAAATGCGATCACATG 58.176 37.500 0.00 0.00 0.00 3.21
50 51 7.566760 AATACATCCTAAAAATGCGATCACA 57.433 32.000 0.00 0.00 0.00 3.58
51 52 8.556194 TGTAATACATCCTAAAAATGCGATCAC 58.444 33.333 0.00 0.00 0.00 3.06
52 53 8.669946 TGTAATACATCCTAAAAATGCGATCA 57.330 30.769 0.00 0.00 0.00 2.92
53 54 8.230486 CCTGTAATACATCCTAAAAATGCGATC 58.770 37.037 0.00 0.00 0.00 3.69
55 56 6.017440 GCCTGTAATACATCCTAAAAATGCGA 60.017 38.462 0.00 0.00 0.00 5.10
56 57 6.017109 AGCCTGTAATACATCCTAAAAATGCG 60.017 38.462 0.00 0.00 0.00 4.73
57 58 7.277174 AGCCTGTAATACATCCTAAAAATGC 57.723 36.000 0.00 0.00 0.00 3.56
62 63 6.540914 CCGAAAAGCCTGTAATACATCCTAAA 59.459 38.462 0.00 0.00 0.00 1.85
64 65 5.607477 CCGAAAAGCCTGTAATACATCCTA 58.393 41.667 0.00 0.00 0.00 2.94
65 66 4.451900 CCGAAAAGCCTGTAATACATCCT 58.548 43.478 0.00 0.00 0.00 3.24
67 68 4.210832 GCCGAAAAGCCTGTAATACATC 57.789 45.455 0.00 0.00 0.00 3.06
80 81 4.482386 GCTTAAAAAGTAGGGCCGAAAAG 58.518 43.478 0.00 0.00 0.00 2.27
85 86 0.730840 CCGCTTAAAAAGTAGGGCCG 59.269 55.000 0.00 0.00 0.00 6.13
86 87 1.830279 ACCGCTTAAAAAGTAGGGCC 58.170 50.000 0.00 0.00 34.32 5.80
87 88 5.235831 CACTATACCGCTTAAAAAGTAGGGC 59.764 44.000 7.75 0.00 34.32 5.19
90 91 7.254017 GCTCACACTATACCGCTTAAAAAGTAG 60.254 40.741 0.00 0.00 0.00 2.57
91 92 6.532657 GCTCACACTATACCGCTTAAAAAGTA 59.467 38.462 0.00 0.00 0.00 2.24
93 94 5.500290 CGCTCACACTATACCGCTTAAAAAG 60.500 44.000 0.00 0.00 0.00 2.27
94 95 4.327898 CGCTCACACTATACCGCTTAAAAA 59.672 41.667 0.00 0.00 0.00 1.94
95 96 3.861113 CGCTCACACTATACCGCTTAAAA 59.139 43.478 0.00 0.00 0.00 1.52
98 99 2.019249 ACGCTCACACTATACCGCTTA 58.981 47.619 0.00 0.00 0.00 3.09
99 100 0.815734 ACGCTCACACTATACCGCTT 59.184 50.000 0.00 0.00 0.00 4.68
101 102 0.099968 TGACGCTCACACTATACCGC 59.900 55.000 0.00 0.00 0.00 5.68
102 103 2.159421 AGTTGACGCTCACACTATACCG 60.159 50.000 0.00 0.00 0.00 4.02
103 104 3.505464 AGTTGACGCTCACACTATACC 57.495 47.619 0.00 0.00 0.00 2.73
104 105 4.027065 CGTAGTTGACGCTCACACTATAC 58.973 47.826 0.00 0.00 46.27 1.47
107 108 2.606717 CGTAGTTGACGCTCACACTA 57.393 50.000 0.00 0.00 46.27 2.74
108 109 3.474007 CGTAGTTGACGCTCACACT 57.526 52.632 0.00 0.00 46.27 3.55
117 118 4.352887 GTCTTAGATGCCTCGTAGTTGAC 58.647 47.826 0.00 0.00 0.00 3.18
118 119 3.064958 CGTCTTAGATGCCTCGTAGTTGA 59.935 47.826 0.00 0.00 0.00 3.18
119 120 3.064958 TCGTCTTAGATGCCTCGTAGTTG 59.935 47.826 0.00 0.00 0.00 3.16
121 122 2.613133 GTCGTCTTAGATGCCTCGTAGT 59.387 50.000 0.00 0.00 0.00 2.73
122 123 2.873472 AGTCGTCTTAGATGCCTCGTAG 59.127 50.000 0.00 0.00 0.00 3.51
124 125 1.752683 AGTCGTCTTAGATGCCTCGT 58.247 50.000 0.00 0.00 0.00 4.18
126 127 3.851098 ACAAAGTCGTCTTAGATGCCTC 58.149 45.455 0.00 0.00 33.09 4.70
127 128 3.258372 TGACAAAGTCGTCTTAGATGCCT 59.742 43.478 0.00 0.00 36.82 4.75
128 129 3.585862 TGACAAAGTCGTCTTAGATGCC 58.414 45.455 0.00 0.00 36.82 4.40
129 130 5.786401 ATTGACAAAGTCGTCTTAGATGC 57.214 39.130 0.00 0.00 36.82 3.91
130 131 7.796838 TGAAATTGACAAAGTCGTCTTAGATG 58.203 34.615 0.00 0.00 36.82 2.90
131 132 7.872993 TCTGAAATTGACAAAGTCGTCTTAGAT 59.127 33.333 0.00 0.00 36.82 1.98
132 133 7.169308 GTCTGAAATTGACAAAGTCGTCTTAGA 59.831 37.037 0.00 0.00 36.82 2.10
133 134 7.169982 AGTCTGAAATTGACAAAGTCGTCTTAG 59.830 37.037 0.00 0.00 36.82 2.18
134 135 6.984474 AGTCTGAAATTGACAAAGTCGTCTTA 59.016 34.615 0.00 0.00 36.82 2.10
135 136 5.817816 AGTCTGAAATTGACAAAGTCGTCTT 59.182 36.000 0.00 0.00 36.82 3.01
136 137 5.360591 AGTCTGAAATTGACAAAGTCGTCT 58.639 37.500 0.00 0.00 36.82 4.18
139 140 5.107065 GGGTAGTCTGAAATTGACAAAGTCG 60.107 44.000 0.00 0.00 36.94 4.18
141 142 5.531287 GTGGGTAGTCTGAAATTGACAAAGT 59.469 40.000 0.00 0.00 36.94 2.66
142 143 5.530915 TGTGGGTAGTCTGAAATTGACAAAG 59.469 40.000 0.00 0.00 36.94 2.77
143 144 5.441500 TGTGGGTAGTCTGAAATTGACAAA 58.558 37.500 0.00 0.00 36.94 2.83
144 145 5.042463 TGTGGGTAGTCTGAAATTGACAA 57.958 39.130 0.00 0.00 36.94 3.18
146 147 4.452455 CACTGTGGGTAGTCTGAAATTGAC 59.548 45.833 0.00 0.00 34.88 3.18
147 148 4.504864 CCACTGTGGGTAGTCTGAAATTGA 60.505 45.833 19.23 0.00 32.67 2.57
150 151 3.703001 CCACTGTGGGTAGTCTGAAAT 57.297 47.619 19.23 0.00 32.67 2.17
162 163 2.838202 ACCTATGTTACTCCCACTGTGG 59.162 50.000 20.01 20.01 37.25 4.17
163 164 4.710375 ACTACCTATGTTACTCCCACTGTG 59.290 45.833 0.00 0.00 0.00 3.66
164 165 4.944177 ACTACCTATGTTACTCCCACTGT 58.056 43.478 0.00 0.00 0.00 3.55
165 166 6.379133 TGTTACTACCTATGTTACTCCCACTG 59.621 42.308 0.00 0.00 0.00 3.66
167 168 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
169 170 7.069085 TGTGATGTTACTACCTATGTTACTCCC 59.931 40.741 0.00 0.00 0.00 4.30
170 171 7.919621 GTGTGATGTTACTACCTATGTTACTCC 59.080 40.741 0.00 0.00 0.00 3.85
171 172 8.464404 TGTGTGATGTTACTACCTATGTTACTC 58.536 37.037 0.00 0.00 0.00 2.59
172 173 8.357290 TGTGTGATGTTACTACCTATGTTACT 57.643 34.615 0.00 0.00 0.00 2.24
175 176 9.982651 GATATGTGTGATGTTACTACCTATGTT 57.017 33.333 0.00 0.00 0.00 2.71
180 181 8.005388 ACCTAGATATGTGTGATGTTACTACCT 58.995 37.037 0.00 0.00 0.00 3.08
181 182 8.179509 ACCTAGATATGTGTGATGTTACTACC 57.820 38.462 0.00 0.00 0.00 3.18
198 199 9.100197 TGCCACATCATCTATTTAACCTAGATA 57.900 33.333 6.48 0.00 34.84 1.98
199 200 7.977818 TGCCACATCATCTATTTAACCTAGAT 58.022 34.615 0.00 2.29 36.58 1.98
201 202 8.509690 CAATGCCACATCATCTATTTAACCTAG 58.490 37.037 0.00 0.00 0.00 3.02
202 203 7.040478 GCAATGCCACATCATCTATTTAACCTA 60.040 37.037 0.00 0.00 0.00 3.08
204 205 5.922544 GCAATGCCACATCATCTATTTAACC 59.077 40.000 0.00 0.00 0.00 2.85
205 206 6.506147 TGCAATGCCACATCATCTATTTAAC 58.494 36.000 1.53 0.00 0.00 2.01
206 207 6.712179 TGCAATGCCACATCATCTATTTAA 57.288 33.333 1.53 0.00 0.00 1.52
207 208 6.712179 TTGCAATGCCACATCATCTATTTA 57.288 33.333 1.53 0.00 0.00 1.40
208 209 5.601583 TTGCAATGCCACATCATCTATTT 57.398 34.783 1.53 0.00 0.00 1.40
210 211 6.904463 TTATTGCAATGCCACATCATCTAT 57.096 33.333 22.27 0.00 0.00 1.98
211 212 6.712179 TTTATTGCAATGCCACATCATCTA 57.288 33.333 22.27 0.00 0.00 1.98
213 214 5.986741 TCATTTATTGCAATGCCACATCATC 59.013 36.000 22.27 0.00 34.58 2.92
214 215 5.919755 TCATTTATTGCAATGCCACATCAT 58.080 33.333 22.27 0.00 34.58 2.45
215 216 5.340439 TCATTTATTGCAATGCCACATCA 57.660 34.783 22.27 0.00 34.58 3.07
216 217 6.044046 TCTTCATTTATTGCAATGCCACATC 58.956 36.000 22.27 0.00 34.58 3.06
217 218 5.979993 TCTTCATTTATTGCAATGCCACAT 58.020 33.333 22.27 3.82 34.58 3.21
218 219 5.402997 TCTTCATTTATTGCAATGCCACA 57.597 34.783 22.27 0.00 34.58 4.17
220 221 6.699366 TCTTTCTTCATTTATTGCAATGCCA 58.301 32.000 22.27 5.87 34.58 4.92
221 222 7.037438 TCTCTTTCTTCATTTATTGCAATGCC 58.963 34.615 22.27 0.00 34.58 4.40
222 223 8.540492 CATCTCTTTCTTCATTTATTGCAATGC 58.460 33.333 22.27 0.00 34.58 3.56
223 224 9.797556 TCATCTCTTTCTTCATTTATTGCAATG 57.202 29.630 22.27 6.82 35.73 2.82
227 228 9.852091 ACTTTCATCTCTTTCTTCATTTATTGC 57.148 29.630 0.00 0.00 0.00 3.56
230 231 9.525826 ACCACTTTCATCTCTTTCTTCATTTAT 57.474 29.630 0.00 0.00 0.00 1.40
231 232 8.924511 ACCACTTTCATCTCTTTCTTCATTTA 57.075 30.769 0.00 0.00 0.00 1.40
232 233 7.830099 ACCACTTTCATCTCTTTCTTCATTT 57.170 32.000 0.00 0.00 0.00 2.32
235 236 7.279615 TGTTACCACTTTCATCTCTTTCTTCA 58.720 34.615 0.00 0.00 0.00 3.02
236 237 7.730364 TGTTACCACTTTCATCTCTTTCTTC 57.270 36.000 0.00 0.00 0.00 2.87
238 239 7.550906 GCTATGTTACCACTTTCATCTCTTTCT 59.449 37.037 0.00 0.00 0.00 2.52
239 240 7.550906 AGCTATGTTACCACTTTCATCTCTTTC 59.449 37.037 0.00 0.00 0.00 2.62
240 241 7.398024 AGCTATGTTACCACTTTCATCTCTTT 58.602 34.615 0.00 0.00 0.00 2.52
242 243 6.552445 AGCTATGTTACCACTTTCATCTCT 57.448 37.500 0.00 0.00 0.00 3.10
243 244 7.493367 ACTAGCTATGTTACCACTTTCATCTC 58.507 38.462 0.00 0.00 0.00 2.75
244 245 7.425224 ACTAGCTATGTTACCACTTTCATCT 57.575 36.000 0.00 0.00 0.00 2.90
245 246 9.032420 GTAACTAGCTATGTTACCACTTTCATC 57.968 37.037 22.55 6.32 42.06 2.92
246 247 8.759782 AGTAACTAGCTATGTTACCACTTTCAT 58.240 33.333 25.92 13.30 46.31 2.57
247 248 8.130671 AGTAACTAGCTATGTTACCACTTTCA 57.869 34.615 25.92 4.92 46.31 2.69
249 250 9.252635 AGTAGTAACTAGCTATGTTACCACTTT 57.747 33.333 24.23 16.61 44.23 2.66
251 252 9.558396 CTAGTAGTAACTAGCTATGTTACCACT 57.442 37.037 27.98 27.98 46.53 4.00
269 270 9.895138 TGTGTGATGTTACTCATACTAGTAGTA 57.105 33.333 12.38 12.38 37.92 1.82
270 271 8.803397 TGTGTGATGTTACTCATACTAGTAGT 57.197 34.615 8.85 8.14 37.92 2.73
276 277 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
277 278 8.982685 CCTTGATATGTGTGATGTTACTCATAC 58.017 37.037 0.00 5.35 38.84 2.39
278 279 7.657354 GCCTTGATATGTGTGATGTTACTCATA 59.343 37.037 0.00 0.00 39.73 2.15
279 280 6.484643 GCCTTGATATGTGTGATGTTACTCAT 59.515 38.462 0.00 0.00 38.11 2.90
280 281 5.817296 GCCTTGATATGTGTGATGTTACTCA 59.183 40.000 0.00 0.00 0.00 3.41
281 282 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
283 284 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
284 285 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
285 286 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
286 287 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
287 288 5.298527 ACATCTTGCCTTGATATGTGTGATG 59.701 40.000 0.00 0.00 35.23 3.07
288 289 5.298527 CACATCTTGCCTTGATATGTGTGAT 59.701 40.000 0.00 0.00 41.46 3.06
289 290 4.637091 CACATCTTGCCTTGATATGTGTGA 59.363 41.667 0.00 0.00 41.46 3.58
290 291 4.916870 CACATCTTGCCTTGATATGTGTG 58.083 43.478 0.00 0.00 41.46 3.82
294 295 7.064371 GCTATAGACACATCTTGCCTTGATATG 59.936 40.741 3.21 0.00 36.29 1.78
295 296 7.102346 GCTATAGACACATCTTGCCTTGATAT 58.898 38.462 3.21 0.00 36.29 1.63
296 297 6.459066 GCTATAGACACATCTTGCCTTGATA 58.541 40.000 3.21 0.00 36.29 2.15
299 300 3.812053 GGCTATAGACACATCTTGCCTTG 59.188 47.826 3.21 0.00 39.50 3.61
300 301 3.713764 AGGCTATAGACACATCTTGCCTT 59.286 43.478 8.68 0.00 45.01 4.35
301 302 3.312890 AGGCTATAGACACATCTTGCCT 58.687 45.455 8.68 0.00 43.78 4.75
302 303 3.760580 AGGCTATAGACACATCTTGCC 57.239 47.619 8.68 0.00 41.26 4.52
303 304 8.833231 TTTATTAGGCTATAGACACATCTTGC 57.167 34.615 8.68 0.00 36.29 4.01
309 310 9.764363 CACTTCATTTATTAGGCTATAGACACA 57.236 33.333 8.68 0.00 0.00 3.72
310 311 9.765795 ACACTTCATTTATTAGGCTATAGACAC 57.234 33.333 8.68 0.00 0.00 3.67
313 314 9.273016 GCAACACTTCATTTATTAGGCTATAGA 57.727 33.333 3.21 0.00 0.00 1.98
314 315 9.056005 TGCAACACTTCATTTATTAGGCTATAG 57.944 33.333 0.00 0.00 0.00 1.31
315 316 8.972458 TGCAACACTTCATTTATTAGGCTATA 57.028 30.769 0.00 0.00 0.00 1.31
316 317 7.880160 TGCAACACTTCATTTATTAGGCTAT 57.120 32.000 0.00 0.00 0.00 2.97
317 318 7.339212 ACATGCAACACTTCATTTATTAGGCTA 59.661 33.333 0.00 0.00 0.00 3.93
318 319 6.153340 ACATGCAACACTTCATTTATTAGGCT 59.847 34.615 0.00 0.00 0.00 4.58
319 320 6.332630 ACATGCAACACTTCATTTATTAGGC 58.667 36.000 0.00 0.00 0.00 3.93
320 321 9.289303 GTAACATGCAACACTTCATTTATTAGG 57.711 33.333 0.00 0.00 0.00 2.69
321 322 9.289303 GGTAACATGCAACACTTCATTTATTAG 57.711 33.333 0.00 0.00 0.00 1.73
324 325 7.225784 TGGTAACATGCAACACTTCATTTAT 57.774 32.000 0.00 0.00 46.17 1.40
325 326 6.641169 TGGTAACATGCAACACTTCATTTA 57.359 33.333 0.00 0.00 46.17 1.40
343 344 4.783763 TGGGGAGTAACATATGTGTGGTAA 59.216 41.667 9.63 0.00 38.92 2.85
344 345 4.162698 GTGGGGAGTAACATATGTGTGGTA 59.837 45.833 9.63 0.00 38.92 3.25
345 346 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
346 347 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
347 348 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
349 350 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
350 351 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
351 352 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
352 353 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
354 355 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
355 356 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
356 357 4.766373 GCTACCTCTATAGTGGGGAGTAAC 59.234 50.000 21.82 6.49 33.22 2.50
357 358 4.417854 TGCTACCTCTATAGTGGGGAGTAA 59.582 45.833 21.82 11.01 33.22 2.24
358 359 3.985452 TGCTACCTCTATAGTGGGGAGTA 59.015 47.826 21.82 16.13 33.22 2.59
359 360 2.789992 TGCTACCTCTATAGTGGGGAGT 59.210 50.000 21.82 6.40 33.22 3.85
361 362 3.052414 TGTTGCTACCTCTATAGTGGGGA 60.052 47.826 21.82 11.28 33.22 4.81
363 364 6.010850 TCTATGTTGCTACCTCTATAGTGGG 58.989 44.000 21.82 16.23 33.22 4.61
364 365 6.717540 AGTCTATGTTGCTACCTCTATAGTGG 59.282 42.308 17.49 17.49 34.99 4.00
365 366 7.753309 AGTCTATGTTGCTACCTCTATAGTG 57.247 40.000 0.00 0.00 0.00 2.74
366 367 8.662255 ACTAGTCTATGTTGCTACCTCTATAGT 58.338 37.037 0.00 0.00 0.00 2.12
369 370 9.287373 GTTACTAGTCTATGTTGCTACCTCTAT 57.713 37.037 0.00 0.00 0.00 1.98
371 372 7.117397 TGTTACTAGTCTATGTTGCTACCTCT 58.883 38.462 0.00 0.00 0.00 3.69
372 373 7.330900 TGTTACTAGTCTATGTTGCTACCTC 57.669 40.000 0.00 0.00 0.00 3.85
373 374 7.342284 ACATGTTACTAGTCTATGTTGCTACCT 59.658 37.037 0.00 0.00 0.00 3.08
374 375 7.490000 ACATGTTACTAGTCTATGTTGCTACC 58.510 38.462 0.00 0.00 0.00 3.18
375 376 8.188799 TGACATGTTACTAGTCTATGTTGCTAC 58.811 37.037 16.14 0.00 32.58 3.58
376 377 8.288689 TGACATGTTACTAGTCTATGTTGCTA 57.711 34.615 16.14 5.98 32.58 3.49
377 378 7.170393 TGACATGTTACTAGTCTATGTTGCT 57.830 36.000 16.14 0.26 32.58 3.91
378 379 7.492669 ACATGACATGTTACTAGTCTATGTTGC 59.507 37.037 15.48 8.71 41.63 4.17
379 380 8.932945 ACATGACATGTTACTAGTCTATGTTG 57.067 34.615 15.48 14.17 41.63 3.33
401 402 9.878737 ATGGGTACTAACATAGACTAGTAACAT 57.121 33.333 0.00 4.97 39.22 2.71
402 403 9.705103 AATGGGTACTAACATAGACTAGTAACA 57.295 33.333 0.00 3.26 39.22 2.41
403 404 9.962783 CAATGGGTACTAACATAGACTAGTAAC 57.037 37.037 0.00 0.00 37.52 2.50
404 405 9.705103 ACAATGGGTACTAACATAGACTAGTAA 57.295 33.333 0.00 0.00 33.51 2.24
406 407 7.069578 CCACAATGGGTACTAACATAGACTAGT 59.930 40.741 0.00 0.00 32.67 2.57
407 408 7.434492 CCACAATGGGTACTAACATAGACTAG 58.566 42.308 0.00 0.00 32.67 2.57
408 409 6.183360 GCCACAATGGGTACTAACATAGACTA 60.183 42.308 0.00 0.00 38.19 2.59
409 410 5.396436 GCCACAATGGGTACTAACATAGACT 60.396 44.000 0.00 0.00 38.19 3.24
411 412 5.031066 GCCACAATGGGTACTAACATAGA 57.969 43.478 0.00 0.00 38.19 1.98
426 427 5.669477 GAGAATCTTGAGACTAGCCACAAT 58.331 41.667 0.00 0.00 0.00 2.71
427 428 5.078411 GAGAATCTTGAGACTAGCCACAA 57.922 43.478 0.00 0.00 0.00 3.33
428 429 4.727507 GAGAATCTTGAGACTAGCCACA 57.272 45.455 0.00 0.00 0.00 4.17
466 467 9.762933 GAACACACATATTTATAAATTGCCCAT 57.237 29.630 15.64 0.76 0.00 4.00
467 468 8.753133 TGAACACACATATTTATAAATTGCCCA 58.247 29.630 15.64 6.77 0.00 5.36
468 469 9.762933 ATGAACACACATATTTATAAATTGCCC 57.237 29.630 15.64 4.67 0.00 5.36
480 481 8.481314 ACACTCATCTCTATGAACACACATATT 58.519 33.333 0.00 0.00 41.57 1.28
481 482 7.924947 CACACTCATCTCTATGAACACACATAT 59.075 37.037 0.00 0.00 41.57 1.78
482 483 7.093771 ACACACTCATCTCTATGAACACACATA 60.094 37.037 0.00 0.00 41.57 2.29
483 484 6.104665 CACACTCATCTCTATGAACACACAT 58.895 40.000 0.00 0.00 41.57 3.21
487 488 4.328440 GCACACACTCATCTCTATGAACAC 59.672 45.833 0.00 0.00 41.57 3.32
488 489 4.498241 GCACACACTCATCTCTATGAACA 58.502 43.478 0.00 0.00 41.57 3.18
489 490 3.868077 GGCACACACTCATCTCTATGAAC 59.132 47.826 0.00 0.00 41.57 3.18
490 491 3.771479 AGGCACACACTCATCTCTATGAA 59.229 43.478 0.00 0.00 41.57 2.57
491 492 3.369175 AGGCACACACTCATCTCTATGA 58.631 45.455 0.00 0.00 39.87 2.15
492 493 3.384146 AGAGGCACACACTCATCTCTATG 59.616 47.826 0.00 0.00 37.43 2.23
493 494 3.641046 AGAGGCACACACTCATCTCTAT 58.359 45.455 0.00 0.00 37.43 1.98
494 495 3.093057 AGAGGCACACACTCATCTCTA 57.907 47.619 0.00 0.00 37.43 2.43
495 496 1.935799 AGAGGCACACACTCATCTCT 58.064 50.000 0.00 0.00 37.43 3.10
496 497 3.131933 ACATAGAGGCACACACTCATCTC 59.868 47.826 0.00 0.00 37.43 2.75
497 498 3.102972 ACATAGAGGCACACACTCATCT 58.897 45.455 0.00 0.00 37.43 2.90
499 500 4.681781 GCTTACATAGAGGCACACACTCAT 60.682 45.833 0.00 0.00 37.43 2.90
500 501 3.368427 GCTTACATAGAGGCACACACTCA 60.368 47.826 0.00 0.00 37.43 3.41
501 502 3.190874 GCTTACATAGAGGCACACACTC 58.809 50.000 0.00 0.00 35.20 3.51
502 503 2.417379 CGCTTACATAGAGGCACACACT 60.417 50.000 0.00 0.00 0.00 3.55
503 504 1.927174 CGCTTACATAGAGGCACACAC 59.073 52.381 0.00 0.00 0.00 3.82
506 507 2.100197 AGACGCTTACATAGAGGCACA 58.900 47.619 0.00 0.00 33.42 4.57
507 508 2.159226 ACAGACGCTTACATAGAGGCAC 60.159 50.000 0.00 0.00 33.42 5.01
508 509 2.100197 ACAGACGCTTACATAGAGGCA 58.900 47.619 0.00 0.00 33.42 4.75
509 510 2.873133 ACAGACGCTTACATAGAGGC 57.127 50.000 0.00 0.00 30.59 4.70
510 511 6.073327 TCATAACAGACGCTTACATAGAGG 57.927 41.667 0.00 0.00 0.00 3.69
511 512 7.649705 ACAATCATAACAGACGCTTACATAGAG 59.350 37.037 0.00 0.00 0.00 2.43
514 515 8.410912 AGTACAATCATAACAGACGCTTACATA 58.589 33.333 0.00 0.00 0.00 2.29
515 516 7.222805 CAGTACAATCATAACAGACGCTTACAT 59.777 37.037 0.00 0.00 0.00 2.29
516 517 6.530181 CAGTACAATCATAACAGACGCTTACA 59.470 38.462 0.00 0.00 0.00 2.41
517 518 6.530534 ACAGTACAATCATAACAGACGCTTAC 59.469 38.462 0.00 0.00 0.00 2.34
518 519 6.530181 CACAGTACAATCATAACAGACGCTTA 59.470 38.462 0.00 0.00 0.00 3.09
519 520 5.348724 CACAGTACAATCATAACAGACGCTT 59.651 40.000 0.00 0.00 0.00 4.68
520 521 4.864806 CACAGTACAATCATAACAGACGCT 59.135 41.667 0.00 0.00 0.00 5.07
521 522 4.625742 ACACAGTACAATCATAACAGACGC 59.374 41.667 0.00 0.00 0.00 5.19
523 524 8.311650 AGAAACACAGTACAATCATAACAGAC 57.688 34.615 0.00 0.00 0.00 3.51
524 525 8.902540 AAGAAACACAGTACAATCATAACAGA 57.097 30.769 0.00 0.00 0.00 3.41
525 526 9.385902 CAAAGAAACACAGTACAATCATAACAG 57.614 33.333 0.00 0.00 0.00 3.16
526 527 9.114952 TCAAAGAAACACAGTACAATCATAACA 57.885 29.630 0.00 0.00 0.00 2.41
534 535 9.391006 AGTCTATTTCAAAGAAACACAGTACAA 57.609 29.630 0.00 0.00 0.00 2.41
537 538 9.607988 TCAAGTCTATTTCAAAGAAACACAGTA 57.392 29.630 0.00 0.00 0.00 2.74
538 539 8.506168 TCAAGTCTATTTCAAAGAAACACAGT 57.494 30.769 0.00 0.00 0.00 3.55
539 540 9.956720 AATCAAGTCTATTTCAAAGAAACACAG 57.043 29.630 0.00 0.00 0.00 3.66
540 541 9.950680 GAATCAAGTCTATTTCAAAGAAACACA 57.049 29.630 0.00 0.00 0.00 3.72
541 542 9.950680 TGAATCAAGTCTATTTCAAAGAAACAC 57.049 29.630 0.00 0.00 0.00 3.32
553 554 8.462016 GCACTTTTGGTATGAATCAAGTCTATT 58.538 33.333 0.00 0.00 0.00 1.73
554 555 7.611467 TGCACTTTTGGTATGAATCAAGTCTAT 59.389 33.333 0.00 0.00 0.00 1.98
561 2489 6.403866 AAAGTGCACTTTTGGTATGAATCA 57.596 33.333 33.85 0.00 43.07 2.57
630 2558 8.321621 TCATGGGGTAAATTGAATCAAATCAT 57.678 30.769 0.00 0.00 0.00 2.45
631 2559 7.730672 TCATGGGGTAAATTGAATCAAATCA 57.269 32.000 0.00 0.00 0.00 2.57
632 2560 8.882736 GTTTCATGGGGTAAATTGAATCAAATC 58.117 33.333 0.00 0.00 0.00 2.17
633 2561 8.605065 AGTTTCATGGGGTAAATTGAATCAAAT 58.395 29.630 0.00 0.00 0.00 2.32
645 2573 4.517453 CGTTTTCAGAGTTTCATGGGGTAA 59.483 41.667 0.00 0.00 0.00 2.85
713 2642 7.509318 TGAGGGTAGGGTATGTGCATATATATC 59.491 40.741 6.43 0.00 0.00 1.63
722 2651 1.497161 AGTGAGGGTAGGGTATGTGC 58.503 55.000 0.00 0.00 0.00 4.57
725 2654 4.805744 AGTAGAAGTGAGGGTAGGGTATG 58.194 47.826 0.00 0.00 0.00 2.39
733 2662 4.342359 ACGTTCATAGTAGAAGTGAGGGT 58.658 43.478 0.00 0.00 0.00 4.34
734 2663 4.985538 ACGTTCATAGTAGAAGTGAGGG 57.014 45.455 0.00 0.00 0.00 4.30
735 2664 5.915758 GCATACGTTCATAGTAGAAGTGAGG 59.084 44.000 0.00 0.00 0.00 3.86
736 2665 6.415280 GTGCATACGTTCATAGTAGAAGTGAG 59.585 42.308 0.00 0.00 0.00 3.51
737 2666 6.127842 TGTGCATACGTTCATAGTAGAAGTGA 60.128 38.462 0.00 0.00 0.00 3.41
738 2667 6.020599 GTGTGCATACGTTCATAGTAGAAGTG 60.021 42.308 0.00 0.00 0.00 3.16
739 2668 6.034591 GTGTGCATACGTTCATAGTAGAAGT 58.965 40.000 0.00 0.00 0.00 3.01
740 2669 6.033966 TGTGTGCATACGTTCATAGTAGAAG 58.966 40.000 9.18 0.00 0.00 2.85
741 2670 5.956642 TGTGTGCATACGTTCATAGTAGAA 58.043 37.500 9.18 0.00 0.00 2.10
742 2671 5.570234 TGTGTGCATACGTTCATAGTAGA 57.430 39.130 9.18 0.00 0.00 2.59
745 2674 5.419542 AGAATGTGTGCATACGTTCATAGT 58.580 37.500 35.37 20.70 44.93 2.12
767 2696 7.432059 TGAAGATAATGTGCTCAGAGTGATAG 58.568 38.462 0.00 0.00 0.00 2.08
775 2704 6.203145 CCTCAATCTGAAGATAATGTGCTCAG 59.797 42.308 0.00 0.00 33.73 3.35
782 2711 7.854557 TGTCAACCTCAATCTGAAGATAATG 57.145 36.000 0.00 0.00 33.73 1.90
783 2712 8.868522 TTTGTCAACCTCAATCTGAAGATAAT 57.131 30.769 0.00 0.00 33.73 1.28
786 2715 7.361542 CGATTTTGTCAACCTCAATCTGAAGAT 60.362 37.037 6.28 0.00 36.07 2.40
787 2716 6.073058 CGATTTTGTCAACCTCAATCTGAAGA 60.073 38.462 6.28 0.00 0.00 2.87
788 2717 6.082338 CGATTTTGTCAACCTCAATCTGAAG 58.918 40.000 6.28 0.00 0.00 3.02
789 2718 5.048782 CCGATTTTGTCAACCTCAATCTGAA 60.049 40.000 6.28 0.00 0.00 3.02
790 2719 4.455533 CCGATTTTGTCAACCTCAATCTGA 59.544 41.667 6.28 0.00 0.00 3.27
791 2720 4.726416 CCGATTTTGTCAACCTCAATCTG 58.274 43.478 6.28 0.00 0.00 2.90
794 2723 2.890311 TGCCGATTTTGTCAACCTCAAT 59.110 40.909 0.00 0.00 0.00 2.57
795 2724 2.034053 GTGCCGATTTTGTCAACCTCAA 59.966 45.455 0.00 0.00 0.00 3.02
796 2725 1.606668 GTGCCGATTTTGTCAACCTCA 59.393 47.619 0.00 0.00 0.00 3.86
797 2726 1.606668 TGTGCCGATTTTGTCAACCTC 59.393 47.619 0.00 0.00 0.00 3.85
798 2727 1.608590 CTGTGCCGATTTTGTCAACCT 59.391 47.619 0.00 0.00 0.00 3.50
799 2728 1.336755 ACTGTGCCGATTTTGTCAACC 59.663 47.619 0.00 0.00 0.00 3.77
1070 3018 1.446792 CCGCTTCGCAGTGAGATGT 60.447 57.895 10.66 0.00 31.42 3.06
1087 3035 1.214062 AGCGCGATATAGCTCTGCC 59.786 57.895 12.10 0.00 39.98 4.85
1350 4536 2.584608 CTGGAAACCTCGGCCGAT 59.415 61.111 31.19 14.70 0.00 4.18
1356 4542 4.016706 ACGCCCCTGGAAACCTCG 62.017 66.667 0.00 0.00 0.00 4.63
1702 4888 8.655935 AAAGGGAGTGAATTTCTACAATCAAT 57.344 30.769 0.00 0.00 33.65 2.57
1731 4918 7.634671 TGACTATCAAGTATGAGGAACGTTA 57.365 36.000 0.00 0.00 39.39 3.18
1879 5089 5.022787 ACTAATGAGAGCTGGGGATCTATC 58.977 45.833 0.00 0.00 38.42 2.08
1883 5093 3.737850 CAACTAATGAGAGCTGGGGATC 58.262 50.000 0.00 0.00 0.00 3.36
1937 5147 4.583871 AGAAGTTACCATGAAAGAGCAGG 58.416 43.478 0.00 0.00 0.00 4.85
2076 5450 1.849976 GCATGGCGAGGCTAAGATGC 61.850 60.000 0.00 4.47 0.00 3.91
2627 6002 5.684704 TGGACTCCCAATTCTATGAACATC 58.315 41.667 0.00 0.00 40.09 3.06
2677 6052 7.920682 AGAAGATGTGCACGTAATTTTTCTTTT 59.079 29.630 12.53 1.81 0.00 2.27
2681 6056 7.623268 AAAGAAGATGTGCACGTAATTTTTC 57.377 32.000 12.53 10.70 0.00 2.29
2682 6057 8.964150 GTAAAAGAAGATGTGCACGTAATTTTT 58.036 29.630 12.53 16.72 0.00 1.94
2683 6058 8.132362 TGTAAAAGAAGATGTGCACGTAATTTT 58.868 29.630 12.53 16.79 0.00 1.82
2712 6089 1.955495 ATGCTGTATGCGTCCCGTCA 61.955 55.000 0.00 0.00 46.63 4.35
2715 6092 0.304705 GAAATGCTGTATGCGTCCCG 59.695 55.000 0.00 0.00 46.63 5.14
2720 6097 0.381801 GGGTGGAAATGCTGTATGCG 59.618 55.000 0.00 0.00 46.63 4.73
2724 6101 0.039035 GTGGGGGTGGAAATGCTGTA 59.961 55.000 0.00 0.00 0.00 2.74
2725 6102 1.228862 GTGGGGGTGGAAATGCTGT 60.229 57.895 0.00 0.00 0.00 4.40
2726 6103 1.984026 GGTGGGGGTGGAAATGCTG 60.984 63.158 0.00 0.00 0.00 4.41
2727 6104 2.445155 GGTGGGGGTGGAAATGCT 59.555 61.111 0.00 0.00 0.00 3.79
2758 6135 1.859302 TCAGGTGCAACAGGGTTTTT 58.141 45.000 3.64 0.00 39.98 1.94
2759 6136 1.756538 CTTCAGGTGCAACAGGGTTTT 59.243 47.619 3.64 0.00 39.98 2.43
2760 6137 1.064017 TCTTCAGGTGCAACAGGGTTT 60.064 47.619 3.64 0.00 39.98 3.27
2761 6138 0.550914 TCTTCAGGTGCAACAGGGTT 59.449 50.000 3.64 0.00 39.98 4.11
2762 6139 0.109342 CTCTTCAGGTGCAACAGGGT 59.891 55.000 3.64 0.00 39.98 4.34
2763 6140 1.239968 GCTCTTCAGGTGCAACAGGG 61.240 60.000 3.64 0.00 39.98 4.45
2764 6141 0.250640 AGCTCTTCAGGTGCAACAGG 60.251 55.000 3.64 0.00 39.98 4.00
2765 6142 2.462456 TAGCTCTTCAGGTGCAACAG 57.538 50.000 3.64 0.00 39.98 3.16
2766 6143 3.076621 CAATAGCTCTTCAGGTGCAACA 58.923 45.455 3.64 0.00 39.98 3.33
2767 6144 3.077359 ACAATAGCTCTTCAGGTGCAAC 58.923 45.455 0.00 0.00 36.95 4.17
2782 6396 7.476667 TGTTTTTGCATATTCCGGTACAATAG 58.523 34.615 0.00 0.00 0.00 1.73
3015 6634 8.755018 CACTTTTGACTCATAATTTTGGTCAAC 58.245 33.333 21.05 3.99 43.50 3.18
3023 6642 6.041979 ACAAGGCCACTTTTGACTCATAATTT 59.958 34.615 5.01 0.00 33.81 1.82
3158 6814 1.355381 TGGAAGGAAGTGGTGCATGAT 59.645 47.619 0.00 0.00 0.00 2.45
3434 7095 9.476202 CCAAACCAGAAGAAAATTACTTTAAGG 57.524 33.333 0.00 0.00 0.00 2.69
3665 7326 0.905357 ATCCCTCACCTACAGCACAC 59.095 55.000 0.00 0.00 0.00 3.82
3939 7601 6.861572 GCTAAAAAGGTGAAACATGTAAGACC 59.138 38.462 0.00 5.36 39.98 3.85
4007 7669 7.607223 AGCCATCTTAGAAGATAATCATGAAGC 59.393 37.037 0.00 0.00 43.65 3.86
4169 7831 2.842208 TTGAAACCGCAAAGACACAG 57.158 45.000 0.00 0.00 0.00 3.66
4302 7964 7.114811 GCAAAATGTGTTTAGTCCAACATGTAG 59.885 37.037 0.00 0.00 38.89 2.74
4415 8077 7.739444 TCTCATATTAATATCTCCCACAGGGTT 59.261 37.037 4.93 0.00 44.74 4.11
4676 8338 6.744112 CAGTATGGAAGAGTTCTGGTAGATC 58.256 44.000 0.00 0.00 0.00 2.75
4835 8497 4.401022 AGAACATCATGAAAACAGGCAGA 58.599 39.130 0.00 0.00 0.00 4.26
4838 8500 3.119352 GGGAGAACATCATGAAAACAGGC 60.119 47.826 0.00 0.00 0.00 4.85
4953 8615 0.319641 AAGAAAGCCGACCTCGTGAC 60.320 55.000 0.00 0.00 37.74 3.67
5170 8832 4.119136 GCCCAAATGCGCTTATTACAAAT 58.881 39.130 9.73 0.00 0.00 2.32
5171 8833 3.194542 AGCCCAAATGCGCTTATTACAAA 59.805 39.130 9.73 0.00 36.02 2.83
5235 8929 3.002246 CGTGGCATTATCGTTAACTGCAT 59.998 43.478 15.94 3.70 34.56 3.96
5257 8951 6.696148 CCATTAATTTGCTGATTCTCTCTTGC 59.304 38.462 0.00 0.00 0.00 4.01
5348 9042 9.357652 CAACAGCAGCAGTTAACATTATTTTAT 57.642 29.630 8.61 0.00 0.00 1.40
5349 9043 8.356657 ACAACAGCAGCAGTTAACATTATTTTA 58.643 29.630 8.61 0.00 0.00 1.52
5352 9046 6.331369 ACAACAGCAGCAGTTAACATTATT 57.669 33.333 8.61 0.00 0.00 1.40
5353 9047 5.964958 ACAACAGCAGCAGTTAACATTAT 57.035 34.783 8.61 0.00 0.00 1.28
5354 9048 5.067153 ACAACAACAGCAGCAGTTAACATTA 59.933 36.000 8.61 0.00 0.00 1.90
5355 9049 4.142182 ACAACAACAGCAGCAGTTAACATT 60.142 37.500 8.61 0.00 0.00 2.71
5357 9051 2.752354 ACAACAACAGCAGCAGTTAACA 59.248 40.909 8.61 0.00 0.00 2.41
5358 9052 3.420839 ACAACAACAGCAGCAGTTAAC 57.579 42.857 2.38 0.00 0.00 2.01
5359 9053 5.067153 ACATTACAACAACAGCAGCAGTTAA 59.933 36.000 2.38 0.00 0.00 2.01
5360 9054 4.578516 ACATTACAACAACAGCAGCAGTTA 59.421 37.500 2.38 0.00 0.00 2.24
5362 9056 2.951642 ACATTACAACAACAGCAGCAGT 59.048 40.909 0.00 0.00 0.00 4.40
5364 9058 5.067153 AGTTAACATTACAACAACAGCAGCA 59.933 36.000 8.61 0.00 0.00 4.41
5365 9059 5.399301 CAGTTAACATTACAACAACAGCAGC 59.601 40.000 8.61 0.00 0.00 5.25
5372 9104 3.315470 TGCCGCAGTTAACATTACAACAA 59.685 39.130 8.61 0.00 0.00 2.83
5428 9171 3.856521 CGATTTGCATTGTTTCGGCAATA 59.143 39.130 0.00 0.00 45.81 1.90
5439 9183 2.412770 GCCAACTTTCCGATTTGCATTG 59.587 45.455 0.00 0.00 0.00 2.82
5445 9189 7.173907 CAGATATAGATGCCAACTTTCCGATTT 59.826 37.037 0.00 0.00 0.00 2.17
5450 9194 5.312079 AGCAGATATAGATGCCAACTTTCC 58.688 41.667 8.03 0.00 43.60 3.13
5479 9224 0.894141 TGTGCCTGTGTTGCAACTTT 59.106 45.000 28.61 0.00 41.06 2.66
5593 9338 3.435671 GTGCTTGTGCTTTTCCGTATACT 59.564 43.478 0.56 0.00 40.48 2.12
5594 9339 3.723835 CGTGCTTGTGCTTTTCCGTATAC 60.724 47.826 0.00 0.00 40.48 1.47
5601 9346 1.191096 CACACGTGCTTGTGCTTTTC 58.809 50.000 17.22 0.00 43.74 2.29
5613 9372 7.748683 ACTTGTTATATAATGTTTGCACACGTG 59.251 33.333 15.48 15.48 35.03 4.49
5614 9373 7.812648 ACTTGTTATATAATGTTTGCACACGT 58.187 30.769 0.00 0.00 35.03 4.49
5615 9374 9.762062 TTACTTGTTATATAATGTTTGCACACG 57.238 29.630 0.00 0.00 35.03 4.49
5643 9402 4.022155 GGACAGAGGGAGGACGTTATTATC 60.022 50.000 0.00 0.00 0.00 1.75
5648 9407 0.324091 GGGACAGAGGGAGGACGTTA 60.324 60.000 0.00 0.00 0.00 3.18
5650 9409 2.037527 GGGACAGAGGGAGGACGT 59.962 66.667 0.00 0.00 0.00 4.34
5651 9410 2.037367 TGGGACAGAGGGAGGACG 59.963 66.667 0.00 0.00 0.00 4.79
5664 9423 9.967451 TGTCAAAAACACTCTTATATTATGGGA 57.033 29.630 0.00 0.00 31.20 4.37
5680 9439 5.825151 TGGTGATGATGTAGTGTCAAAAACA 59.175 36.000 0.00 0.00 34.78 2.83
5681 9440 6.312399 TGGTGATGATGTAGTGTCAAAAAC 57.688 37.500 0.00 0.00 0.00 2.43
5682 9441 6.951062 TTGGTGATGATGTAGTGTCAAAAA 57.049 33.333 0.00 0.00 0.00 1.94
5683 9442 6.951062 TTTGGTGATGATGTAGTGTCAAAA 57.049 33.333 0.00 0.00 0.00 2.44
5684 9443 6.545666 ACTTTTGGTGATGATGTAGTGTCAAA 59.454 34.615 0.00 0.00 0.00 2.69
5685 9444 6.061441 ACTTTTGGTGATGATGTAGTGTCAA 58.939 36.000 0.00 0.00 0.00 3.18
5686 9445 5.620206 ACTTTTGGTGATGATGTAGTGTCA 58.380 37.500 0.00 0.00 0.00 3.58
5701 9460 1.340991 ACAGGCAGACACACTTTTGGT 60.341 47.619 0.00 0.00 0.00 3.67
5702 9461 1.392589 ACAGGCAGACACACTTTTGG 58.607 50.000 0.00 0.00 0.00 3.28
5703 9462 3.181397 CAAACAGGCAGACACACTTTTG 58.819 45.455 0.00 0.00 0.00 2.44
5704 9463 2.166254 CCAAACAGGCAGACACACTTTT 59.834 45.455 0.00 0.00 0.00 2.27
5748 9507 6.379133 AGTCCATGTTGAATATGCATGTCTTT 59.621 34.615 10.16 0.00 38.53 2.52
5797 9556 2.099592 CACCGCTTGTTGAATATGGCAT 59.900 45.455 4.88 4.88 0.00 4.40
5874 9661 1.819632 GGTCATACTGGGCCTTGCG 60.820 63.158 4.53 0.00 0.00 4.85
5923 9713 0.321671 GGCCTGTCTCAGCTGTTGTA 59.678 55.000 14.67 0.00 0.00 2.41
5989 9781 1.759445 GGCTCTACAGGCTTCAGATCA 59.241 52.381 0.00 0.00 42.14 2.92
5998 9790 1.227793 GCTGGATGGCTCTACAGGC 60.228 63.158 2.70 0.00 45.76 4.85
6017 9809 2.300967 GGGGTCTGGATGGCACTCA 61.301 63.158 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.