Multiple sequence alignment - TraesCS2D01G292900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G292900 chr2D 100.000 9950 0 0 1 9950 375356325 375366274 0.000000e+00 18375.0
1 TraesCS2D01G292900 chr2D 88.820 161 14 4 5729 5886 375361891 375362050 2.840000e-45 195.0
2 TraesCS2D01G292900 chr2D 88.820 161 14 4 5567 5726 375362053 375362210 2.840000e-45 195.0
3 TraesCS2D01G292900 chr2D 92.308 52 4 0 8529 8580 83962464 83962515 3.850000e-09 75.0
4 TraesCS2D01G292900 chr2B 95.561 3334 81 19 5906 9188 445683233 445686550 0.000000e+00 5275.0
5 TraesCS2D01G292900 chr2B 97.798 2952 53 9 2782 5730 445679956 445682898 0.000000e+00 5081.0
6 TraesCS2D01G292900 chr2B 97.094 2030 45 9 784 2803 445677751 445679776 0.000000e+00 3410.0
7 TraesCS2D01G292900 chr2B 88.035 794 79 9 1 786 96627417 96626632 0.000000e+00 926.0
8 TraesCS2D01G292900 chr2B 93.416 243 15 1 9708 9950 445687101 445687342 9.500000e-95 359.0
9 TraesCS2D01G292900 chr2B 92.130 216 16 1 9284 9498 445686595 445686810 4.520000e-78 303.0
10 TraesCS2D01G292900 chr2B 96.111 180 6 1 5729 5908 445682962 445683140 9.770000e-75 292.0
11 TraesCS2D01G292900 chr2B 95.570 158 7 0 9552 9709 445686913 445687070 4.610000e-63 254.0
12 TraesCS2D01G292900 chr2B 92.784 97 7 0 3036 3132 50031305 50031401 3.750000e-29 141.0
13 TraesCS2D01G292900 chr2B 91.753 97 8 0 3036 3132 546808366 546808270 1.740000e-27 135.0
14 TraesCS2D01G292900 chr2B 89.831 59 2 4 9199 9255 445694154 445694210 1.390000e-08 73.1
15 TraesCS2D01G292900 chr2A 97.147 2944 74 7 1616 4551 507685191 507688132 0.000000e+00 4963.0
16 TraesCS2D01G292900 chr2A 96.460 2768 70 18 6286 9043 507689859 507692608 0.000000e+00 4543.0
17 TraesCS2D01G292900 chr2A 95.870 1138 32 8 4599 5730 507688147 507689275 0.000000e+00 1827.0
18 TraesCS2D01G292900 chr2A 92.830 530 26 5 5729 6257 507689339 507689857 0.000000e+00 758.0
19 TraesCS2D01G292900 chr2A 85.755 702 37 31 9253 9947 507692782 507693427 0.000000e+00 684.0
20 TraesCS2D01G292900 chr2A 88.827 179 15 5 5729 5904 507689113 507689289 2.180000e-51 215.0
21 TraesCS2D01G292900 chr2A 91.489 94 8 0 3041 3134 400977368 400977275 8.110000e-26 130.0
22 TraesCS2D01G292900 chr2A 91.489 94 8 0 3041 3134 402917521 402917428 8.110000e-26 130.0
23 TraesCS2D01G292900 chr2A 94.667 75 4 0 9037 9111 507692630 507692704 6.310000e-22 117.0
24 TraesCS2D01G292900 chr2A 94.545 55 2 1 9145 9199 507692704 507692757 6.400000e-12 84.2
25 TraesCS2D01G292900 chr2A 95.556 45 2 0 8535 8579 202037100 202037144 1.390000e-08 73.1
26 TraesCS2D01G292900 chr6D 91.092 797 54 7 1 785 445651409 445652200 0.000000e+00 1062.0
27 TraesCS2D01G292900 chr6D 94.118 51 2 1 9199 9249 249956924 249956875 1.070000e-09 76.8
28 TraesCS2D01G292900 chr6D 88.333 60 5 2 9198 9257 7460230 7460287 4.990000e-08 71.3
29 TraesCS2D01G292900 chr3A 89.237 799 71 7 1 786 670554113 670553317 0.000000e+00 985.0
30 TraesCS2D01G292900 chr3A 81.707 82 10 4 8541 8618 113800464 113800384 8.340000e-06 63.9
31 TraesCS2D01G292900 chr7D 89.128 791 70 9 5 785 552303949 552304733 0.000000e+00 970.0
32 TraesCS2D01G292900 chr7D 87.799 795 81 9 1 785 135438495 135439283 0.000000e+00 917.0
33 TraesCS2D01G292900 chr7D 87.452 789 83 11 1 784 90255336 90254559 0.000000e+00 894.0
34 TraesCS2D01G292900 chr5D 88.748 791 70 11 5 785 305778624 305779405 0.000000e+00 950.0
35 TraesCS2D01G292900 chr5D 90.566 106 10 0 3036 3141 432451574 432451469 3.750000e-29 141.0
36 TraesCS2D01G292900 chr5D 87.879 66 4 4 9187 9250 358548707 358548770 3.850000e-09 75.0
37 TraesCS2D01G292900 chr7A 88.191 796 79 10 1 785 509725592 509726383 0.000000e+00 935.0
38 TraesCS2D01G292900 chr4B 87.056 788 95 5 1 785 599913465 599914248 0.000000e+00 883.0
39 TraesCS2D01G292900 chr5B 81.324 423 56 10 3042 3446 678448737 678449154 1.250000e-83 322.0
40 TraesCS2D01G292900 chr5B 85.075 67 9 1 8526 8591 22510814 22510880 6.450000e-07 67.6
41 TraesCS2D01G292900 chr5B 87.500 56 6 1 8526 8580 22817658 22817713 8.340000e-06 63.9
42 TraesCS2D01G292900 chr6B 78.355 462 54 22 3041 3461 176161111 176160655 3.570000e-64 257.0
43 TraesCS2D01G292900 chr6B 78.355 462 54 22 3041 3461 176184988 176184532 3.570000e-64 257.0
44 TraesCS2D01G292900 chr6B 78.355 462 54 22 3041 3461 176222293 176221837 3.570000e-64 257.0
45 TraesCS2D01G292900 chr6B 77.922 462 56 22 3041 3461 176247105 176246649 7.720000e-61 246.0
46 TraesCS2D01G292900 chr6B 95.745 47 2 0 9199 9245 55999809 55999763 1.070000e-09 76.8
47 TraesCS2D01G292900 chrUn 78.186 463 54 22 3041 3461 78293532 78293989 1.660000e-62 252.0
48 TraesCS2D01G292900 chr1D 84.074 270 25 11 3041 3296 313138970 313138705 2.780000e-60 244.0
49 TraesCS2D01G292900 chr1D 83.333 78 9 4 9201 9277 12225423 12225349 1.790000e-07 69.4
50 TraesCS2D01G292900 chr4D 92.553 94 7 0 3041 3134 287287673 287287580 1.740000e-27 135.0
51 TraesCS2D01G292900 chr4D 95.000 40 2 0 8541 8580 87721755 87721794 8.340000e-06 63.9
52 TraesCS2D01G292900 chr1B 93.182 88 6 0 3037 3124 253019552 253019639 8.110000e-26 130.0
53 TraesCS2D01G292900 chr6A 94.118 51 1 1 9202 9250 38475576 38475526 1.070000e-09 76.8
54 TraesCS2D01G292900 chr4A 94.000 50 2 1 9199 9248 714590040 714589992 3.850000e-09 75.0
55 TraesCS2D01G292900 chr5A 89.474 57 4 2 9199 9254 295730836 295730781 4.990000e-08 71.3
56 TraesCS2D01G292900 chr5A 93.478 46 3 0 8535 8580 439864836 439864791 1.790000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G292900 chr2D 375356325 375366274 9949 False 18375.000000 18375 100.000000 1 9950 1 chr2D.!!$F2 9949
1 TraesCS2D01G292900 chr2B 445677751 445687342 9591 False 2139.142857 5275 95.382857 784 9950 7 chr2B.!!$F3 9166
2 TraesCS2D01G292900 chr2B 96626632 96627417 785 True 926.000000 926 88.035000 1 786 1 chr2B.!!$R1 785
3 TraesCS2D01G292900 chr2A 507685191 507693427 8236 False 1648.900000 4963 93.262625 1616 9947 8 chr2A.!!$F2 8331
4 TraesCS2D01G292900 chr6D 445651409 445652200 791 False 1062.000000 1062 91.092000 1 785 1 chr6D.!!$F2 784
5 TraesCS2D01G292900 chr3A 670553317 670554113 796 True 985.000000 985 89.237000 1 786 1 chr3A.!!$R2 785
6 TraesCS2D01G292900 chr7D 552303949 552304733 784 False 970.000000 970 89.128000 5 785 1 chr7D.!!$F2 780
7 TraesCS2D01G292900 chr7D 135438495 135439283 788 False 917.000000 917 87.799000 1 785 1 chr7D.!!$F1 784
8 TraesCS2D01G292900 chr7D 90254559 90255336 777 True 894.000000 894 87.452000 1 784 1 chr7D.!!$R1 783
9 TraesCS2D01G292900 chr5D 305778624 305779405 781 False 950.000000 950 88.748000 5 785 1 chr5D.!!$F1 780
10 TraesCS2D01G292900 chr7A 509725592 509726383 791 False 935.000000 935 88.191000 1 785 1 chr7A.!!$F1 784
11 TraesCS2D01G292900 chr4B 599913465 599914248 783 False 883.000000 883 87.056000 1 785 1 chr4B.!!$F1 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 640 0.101040 GCTGCAATTTGATAGGCGCA 59.899 50.000 10.83 0.00 0.00 6.09 F
686 704 0.533308 TTTTCCCGCACGCACTAGTT 60.533 50.000 0.00 0.00 0.00 2.24 F
693 711 0.605589 GCACGCACTAGTTTTCCCCT 60.606 55.000 0.00 0.00 0.00 4.79 F
2368 2407 1.130561 GCACGTGGACCTTAAAGATGC 59.869 52.381 18.88 0.00 0.00 3.91 F
2958 3201 2.158449 CCAACTAGACGCAAGAAGCAAG 59.842 50.000 0.00 0.00 46.13 4.01 F
4573 4818 1.269166 CACCGAATGAGTACACGAGC 58.731 55.000 0.00 0.00 0.00 5.03 F
5226 5471 0.544697 GGGATCTTCTTTACGCCCCA 59.455 55.000 0.00 0.00 32.77 4.96 F
6128 6566 1.384082 AAGCGGGCCTGTATACCCT 60.384 57.895 14.55 0.00 44.63 4.34 F
6965 7406 0.945265 TGTAACGGCGGCAGTACAAC 60.945 55.000 13.24 6.32 0.00 3.32 F
7515 7961 0.527565 AGCTAAATTTGGCCGCAGTG 59.472 50.000 21.41 0.00 34.95 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2321 2360 1.069823 CCGTCAGAATCAGGAGGGATG 59.930 57.143 7.59 0.00 40.59 3.51 R
2448 2487 4.278919 GCTCTAGGGATACAGGTTGAGTAC 59.721 50.000 0.00 0.00 39.74 2.73 R
2834 3076 0.881118 ACGCAAGGCCATGTACTTTG 59.119 50.000 10.15 1.88 46.39 2.77 R
3466 3709 0.331616 GGGGGTTCCAAGCACACTAT 59.668 55.000 0.00 0.00 35.00 2.12 R
4832 5077 2.687935 GTCTGTTCCAAAGGTTCAAGCA 59.312 45.455 0.00 0.00 0.00 3.91 R
5958 6372 2.960384 TCGGTGGTCAAAGTTAGACTCA 59.040 45.455 0.00 0.00 36.29 3.41 R
6924 7365 2.824689 TTAGGGAGGAAATGCATGCA 57.175 45.000 25.04 25.04 0.00 3.96 R
7507 7953 0.527817 AGATTAGCGTACACTGCGGC 60.528 55.000 0.00 0.00 37.44 6.53 R
8390 8841 0.317479 GGTCAGTGTAGGCGTCAAGT 59.683 55.000 0.00 0.00 0.00 3.16 R
9274 9758 0.100503 GGAAAAGCACAAGCACGTGT 59.899 50.000 18.38 0.68 45.49 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 2.430921 CGCGTTCGCTTGTCCTCT 60.431 61.111 14.92 0.00 0.00 3.69
187 188 4.008074 ACTGTTCCTCGTTGATGATGTT 57.992 40.909 0.00 0.00 0.00 2.71
239 240 1.667154 CTTCCTCGTCCATCTCGGCA 61.667 60.000 0.00 0.00 33.14 5.69
243 244 1.949847 CTCGTCCATCTCGGCAAGGT 61.950 60.000 0.00 0.00 33.14 3.50
307 308 0.461339 GTGATAAGCCGCGGGAAAGA 60.461 55.000 29.38 0.00 0.00 2.52
323 324 2.031163 GACGCCAACTCCTGTGCT 59.969 61.111 0.00 0.00 0.00 4.40
359 360 0.246635 CGACGGGGAAGTTCATGTCT 59.753 55.000 5.01 0.00 0.00 3.41
434 435 4.736896 GCGGCGTCGAAGGTTCCT 62.737 66.667 16.53 0.00 39.00 3.36
556 567 1.596752 GCATGGTGGTGTCGTGTCA 60.597 57.895 0.00 0.00 0.00 3.58
617 629 1.153901 CAGAGGGCGCTGCAATTTG 60.154 57.895 8.56 0.00 0.00 2.32
626 640 0.101040 GCTGCAATTTGATAGGCGCA 59.899 50.000 10.83 0.00 0.00 6.09
652 666 1.358725 GCGGTGCGTCAAATCTAGCA 61.359 55.000 0.00 0.00 37.26 3.49
685 703 0.949105 CTTTTCCCGCACGCACTAGT 60.949 55.000 0.00 0.00 0.00 2.57
686 704 0.533308 TTTTCCCGCACGCACTAGTT 60.533 50.000 0.00 0.00 0.00 2.24
689 707 0.947180 TCCCGCACGCACTAGTTTTC 60.947 55.000 0.00 0.00 0.00 2.29
693 711 0.605589 GCACGCACTAGTTTTCCCCT 60.606 55.000 0.00 0.00 0.00 4.79
719 737 3.472298 GGAGCGCGCGAAAACGTA 61.472 61.111 37.18 0.00 34.88 3.57
791 816 1.734465 GTTGGAGATGCTCTTTGGTCG 59.266 52.381 0.00 0.00 0.00 4.79
793 818 1.205655 TGGAGATGCTCTTTGGTCGAG 59.794 52.381 0.00 0.00 0.00 4.04
845 870 2.515641 TCGAGACGTACGTTAGCAAG 57.484 50.000 23.70 11.00 0.00 4.01
847 872 1.903139 CGAGACGTACGTTAGCAAGTG 59.097 52.381 23.70 3.40 0.00 3.16
891 916 1.399471 GCAGAAGAGTTCAGCGCAAAG 60.399 52.381 11.47 0.00 32.51 2.77
905 930 3.289834 AAAGCCACACTGCGCAGG 61.290 61.111 38.27 28.47 36.02 4.85
939 964 2.490685 GCTTCCGTCTCCCTCGTC 59.509 66.667 0.00 0.00 0.00 4.20
940 965 2.341101 GCTTCCGTCTCCCTCGTCA 61.341 63.158 0.00 0.00 0.00 4.35
979 1004 1.283029 CCACTCCACCAGATCCACATT 59.717 52.381 0.00 0.00 0.00 2.71
986 1011 3.424703 CACCAGATCCACATTCCAAACT 58.575 45.455 0.00 0.00 0.00 2.66
1104 1129 1.737008 GCCGTTCTCTTCCACCGAC 60.737 63.158 0.00 0.00 0.00 4.79
1251 1276 1.179814 AAGACAACGACCTCTCCGCT 61.180 55.000 0.00 0.00 0.00 5.52
1350 1375 2.125106 GGTAGGGCTTCCGCAGTG 60.125 66.667 0.00 0.00 38.10 3.66
1359 1384 3.664025 TTCCGCAGTGCCGATCTGG 62.664 63.158 10.11 3.65 42.50 3.86
1386 1411 1.184970 TGGTGCAGTGAGATGACGGA 61.185 55.000 0.00 0.00 0.00 4.69
1395 1420 3.131396 GTGAGATGACGGACTTGTGTTT 58.869 45.455 0.00 0.00 0.00 2.83
1519 1545 5.807011 GCCTTATGGTTCAGCTTATTTGTTG 59.193 40.000 0.00 0.00 35.27 3.33
1583 1609 3.756082 AGGGAAATGGATGGCTGTTAA 57.244 42.857 0.00 0.00 0.00 2.01
1591 1617 7.545615 GGAAATGGATGGCTGTTAAGTTTTAAG 59.454 37.037 0.00 0.00 0.00 1.85
1606 1632 9.581099 TTAAGTTTTAAGCTTGCTAAATATGGC 57.419 29.630 9.86 0.00 0.00 4.40
1639 1665 7.277760 TGAACATCGAATAAGATTGTACCACAG 59.722 37.037 0.00 0.00 0.00 3.66
1664 1690 8.112183 AGATGAATGGAGAATAAAACAGTCCTT 58.888 33.333 0.00 0.00 0.00 3.36
1669 1695 8.794335 ATGGAGAATAAAACAGTCCTTAGTTC 57.206 34.615 0.00 0.00 0.00 3.01
1952 1981 7.363268 GCCTGTTGTCCTGATCAAAATATTTCT 60.363 37.037 0.10 0.00 0.00 2.52
2196 2235 3.921021 GGACATACATGATACAGCTACGC 59.079 47.826 0.00 0.00 0.00 4.42
2321 2360 7.848539 CCAATACCAATTGTGAAAAACGTTTTC 59.151 33.333 25.37 18.22 40.84 2.29
2368 2407 1.130561 GCACGTGGACCTTAAAGATGC 59.869 52.381 18.88 0.00 0.00 3.91
2448 2487 8.821147 TTCCTTCAATTTTCAGTTCAATCATG 57.179 30.769 0.00 0.00 0.00 3.07
2885 3128 7.716799 TTATGCATTCTCCTGGTATTTTTGT 57.283 32.000 3.54 0.00 0.00 2.83
2958 3201 2.158449 CCAACTAGACGCAAGAAGCAAG 59.842 50.000 0.00 0.00 46.13 4.01
3452 3695 4.621068 TGCTCATGCTTTGTACATTAGC 57.379 40.909 18.63 18.63 42.46 3.09
3493 3736 2.031870 GCTTGGAACCCCCATAATGTC 58.968 52.381 0.00 0.00 46.10 3.06
3542 3785 9.965824 AGGTCTATTTAGTGATTTTGTTTGTTG 57.034 29.630 0.00 0.00 0.00 3.33
3578 3821 3.003275 ACGTGTGATGGCTGTTTGTTAAG 59.997 43.478 0.00 0.00 0.00 1.85
3619 3862 2.823747 GTTACCCAAGGCTAACTTTGGG 59.176 50.000 21.28 21.28 44.32 4.12
3984 4229 5.061920 TGCATTTATCCACCGTTTTTACC 57.938 39.130 0.00 0.00 0.00 2.85
4357 4602 6.166279 TGATGAACTTGAACTAACTAGCAGG 58.834 40.000 0.00 0.00 0.00 4.85
4410 4655 8.574196 ACAAATTGAAAGTTTAGATTTCCACG 57.426 30.769 0.00 0.00 36.11 4.94
4573 4818 1.269166 CACCGAATGAGTACACGAGC 58.731 55.000 0.00 0.00 0.00 5.03
4646 4891 1.843368 ATCTGCCATTGGACCTGTTG 58.157 50.000 6.95 0.00 0.00 3.33
4832 5077 9.403583 TCAAATTCTTTCTTACCTGTTGTTAGT 57.596 29.630 0.00 0.00 0.00 2.24
5226 5471 0.544697 GGGATCTTCTTTACGCCCCA 59.455 55.000 0.00 0.00 32.77 4.96
5843 6160 6.207614 GTCTGGGATTTGCTCTTAAAAAGACT 59.792 38.462 0.00 0.00 33.12 3.24
5957 6371 2.275466 ACACAGGGCCCTATTGTACTT 58.725 47.619 29.15 10.97 0.00 2.24
5958 6372 2.647802 ACACAGGGCCCTATTGTACTTT 59.352 45.455 29.15 10.65 0.00 2.66
5980 6394 3.243636 TGAGTCTAACTTTGACCACCGAC 60.244 47.826 0.37 0.00 35.21 4.79
6048 6486 9.374838 GTTGGAAAGATCTTTTGAATGCAATAT 57.625 29.630 21.33 0.00 33.25 1.28
6128 6566 1.384082 AAGCGGGCCTGTATACCCT 60.384 57.895 14.55 0.00 44.63 4.34
6257 6696 9.694137 GGGAACTGTAACTATGATCAGTATAAC 57.306 37.037 0.09 0.00 39.72 1.89
6554 6993 7.144722 TCTGGTGTCAATAAGTTTAAGCATG 57.855 36.000 0.00 0.00 0.00 4.06
6632 7071 7.645340 GTGATATACTGGCTTGCAAGTTAATTG 59.355 37.037 26.55 13.54 42.20 2.32
6852 7293 4.475016 ACAACTGCTAATATCTGGGACCTT 59.525 41.667 0.00 0.00 0.00 3.50
6924 7365 7.923414 GGTACAACCTCTGTTTCAGATTAAT 57.077 36.000 0.00 0.00 39.92 1.40
6925 7366 7.752695 GGTACAACCTCTGTTTCAGATTAATG 58.247 38.462 0.00 1.63 39.92 1.90
6926 7367 6.259550 ACAACCTCTGTTTCAGATTAATGC 57.740 37.500 0.00 0.00 39.92 3.56
6927 7368 5.769662 ACAACCTCTGTTTCAGATTAATGCA 59.230 36.000 0.00 0.00 39.92 3.96
6965 7406 0.945265 TGTAACGGCGGCAGTACAAC 60.945 55.000 13.24 6.32 0.00 3.32
7201 7645 8.128582 TCACAAGCTTAGTGTTTCTGTATTTTG 58.871 33.333 20.87 0.00 38.16 2.44
7400 7844 2.438021 TGGTTGTCTGGCACTAGTTTCT 59.562 45.455 0.00 0.00 0.00 2.52
7403 7847 1.694150 TGTCTGGCACTAGTTTCTGCT 59.306 47.619 0.00 0.00 33.63 4.24
7409 7853 2.884639 GGCACTAGTTTCTGCTTTTCCA 59.115 45.455 0.00 0.00 33.63 3.53
7507 7953 6.824305 TGGAAGAAGAGAAGCTAAATTTGG 57.176 37.500 0.00 0.00 0.00 3.28
7515 7961 0.527565 AGCTAAATTTGGCCGCAGTG 59.472 50.000 21.41 0.00 34.95 3.66
7553 8004 4.706842 TTCACCATAAGGAATCCTAGCC 57.293 45.455 0.46 0.00 38.69 3.93
7556 8007 5.087323 TCACCATAAGGAATCCTAGCCTAG 58.913 45.833 0.46 0.00 38.69 3.02
7557 8008 3.841255 ACCATAAGGAATCCTAGCCTAGC 59.159 47.826 0.46 0.00 38.69 3.42
7558 8009 4.100373 CCATAAGGAATCCTAGCCTAGCT 58.900 47.826 0.46 0.00 39.04 3.32
7559 8010 4.534103 CCATAAGGAATCCTAGCCTAGCTT 59.466 45.833 0.46 0.00 37.28 3.74
7560 8011 5.721960 CCATAAGGAATCCTAGCCTAGCTTA 59.278 44.000 0.46 0.00 37.28 3.09
7934 8385 4.826556 ACCTGCTGATTCTGTAGTTTCTC 58.173 43.478 7.63 0.00 0.00 2.87
8108 8559 7.822161 ATATATTTTGCTACCATGCAGTTCA 57.178 32.000 0.00 0.00 44.27 3.18
8212 8663 4.868171 TGCTGTAGTTTATTTGAGCTACGG 59.132 41.667 0.00 0.00 41.33 4.02
8390 8841 5.363868 CACCAGTGAGAGACCAATATTCCTA 59.636 44.000 0.00 0.00 0.00 2.94
8524 8975 3.238108 AGTTGTCCTGAGATTACTGCG 57.762 47.619 0.00 0.00 0.00 5.18
8543 8994 3.055963 TGCGTTTCCTCCCTAAATCGTAA 60.056 43.478 0.00 0.00 0.00 3.18
8714 9165 5.535333 GCTTATTTCAGCCAATGCATATGT 58.465 37.500 0.00 0.00 41.13 2.29
8779 9230 3.375299 CGATAGGTTGAAGCAAGAAAGGG 59.625 47.826 0.00 0.00 0.00 3.95
8838 9289 6.855403 CACGTGATGATACAACAACATTTGAA 59.145 34.615 10.90 0.00 0.00 2.69
8876 9327 2.300967 GGGGTCTGGATGGCACTCA 61.301 63.158 0.00 0.00 0.00 3.41
8895 9346 1.227793 GCTGGATGGCTCTACAGGC 60.228 63.158 2.70 0.00 45.76 4.85
8904 9355 1.759445 GGCTCTACAGGCTTCAGATCA 59.241 52.381 0.00 0.00 42.14 2.92
8970 9423 0.321671 GGCCTGTCTCAGCTGTTGTA 59.678 55.000 14.67 0.00 0.00 2.41
9019 9475 1.819632 GGTCATACTGGGCCTTGCG 60.820 63.158 4.53 0.00 0.00 4.85
9096 9580 2.099592 CACCGCTTGTTGAATATGGCAT 59.900 45.455 4.88 4.88 0.00 4.40
9145 9629 6.379133 AGTCCATGTTGAATATGCATGTCTTT 59.621 34.615 10.16 0.00 38.53 2.52
9189 9673 2.166254 CCAAACAGGCAGACACACTTTT 59.834 45.455 0.00 0.00 0.00 2.27
9191 9675 1.392589 ACAGGCAGACACACTTTTGG 58.607 50.000 0.00 0.00 0.00 3.28
9192 9676 1.340991 ACAGGCAGACACACTTTTGGT 60.341 47.619 0.00 0.00 0.00 3.67
9207 9691 5.620206 ACTTTTGGTGATGATGTAGTGTCA 58.380 37.500 0.00 0.00 0.00 3.58
9209 9693 6.545666 ACTTTTGGTGATGATGTAGTGTCAAA 59.454 34.615 0.00 0.00 0.00 2.69
9210 9694 6.951062 TTTGGTGATGATGTAGTGTCAAAA 57.049 33.333 0.00 0.00 0.00 2.44
9211 9695 6.951062 TTGGTGATGATGTAGTGTCAAAAA 57.049 33.333 0.00 0.00 0.00 1.94
9212 9696 6.312399 TGGTGATGATGTAGTGTCAAAAAC 57.688 37.500 0.00 0.00 0.00 2.43
9229 9713 9.967451 TGTCAAAAACACTCTTATATTATGGGA 57.033 29.630 0.00 0.00 31.20 4.37
9242 9726 2.037367 TGGGACAGAGGGAGGACG 59.963 66.667 0.00 0.00 0.00 4.79
9243 9727 2.037527 GGGACAGAGGGAGGACGT 59.962 66.667 0.00 0.00 0.00 4.34
9244 9728 1.609794 GGGACAGAGGGAGGACGTT 60.610 63.158 0.00 0.00 0.00 3.99
9245 9729 0.324091 GGGACAGAGGGAGGACGTTA 60.324 60.000 0.00 0.00 0.00 3.18
9250 9734 4.022155 GGACAGAGGGAGGACGTTATTATC 60.022 50.000 0.00 0.00 0.00 1.75
9278 9762 9.762062 TTACTTGTTATATAATGTTTGCACACG 57.238 29.630 0.00 0.00 35.03 4.49
9279 9763 7.812648 ACTTGTTATATAATGTTTGCACACGT 58.187 30.769 0.00 0.00 35.03 4.49
9280 9764 7.748683 ACTTGTTATATAATGTTTGCACACGTG 59.251 33.333 15.48 15.48 35.03 4.49
9292 9776 1.191096 CACACGTGCTTGTGCTTTTC 58.809 50.000 17.22 0.00 43.74 2.29
9299 9797 3.723835 CGTGCTTGTGCTTTTCCGTATAC 60.724 47.826 0.00 0.00 40.48 1.47
9300 9798 3.435671 GTGCTTGTGCTTTTCCGTATACT 59.564 43.478 0.56 0.00 40.48 2.12
9414 9912 0.894141 TGTGCCTGTGTTGCAACTTT 59.106 45.000 28.61 0.00 41.06 2.66
9443 9942 5.312079 AGCAGATATAGATGCCAACTTTCC 58.688 41.667 8.03 0.00 43.60 3.13
9448 9947 7.173907 CAGATATAGATGCCAACTTTCCGATTT 59.826 37.037 0.00 0.00 0.00 2.17
9454 9953 2.412770 GCCAACTTTCCGATTTGCATTG 59.587 45.455 0.00 0.00 0.00 2.82
9465 9964 3.856521 CGATTTGCATTGTTTCGGCAATA 59.143 39.130 0.00 0.00 45.81 1.90
9521 10032 3.315470 TGCCGCAGTTAACATTACAACAA 59.685 39.130 8.61 0.00 0.00 2.83
9528 10039 5.399301 CAGTTAACATTACAACAACAGCAGC 59.601 40.000 8.61 0.00 0.00 5.25
9530 10041 3.631145 ACATTACAACAACAGCAGCAG 57.369 42.857 0.00 0.00 0.00 4.24
9531 10042 2.951642 ACATTACAACAACAGCAGCAGT 59.048 40.909 0.00 0.00 0.00 4.40
9532 10043 3.381272 ACATTACAACAACAGCAGCAGTT 59.619 39.130 0.00 0.00 0.00 3.16
9534 10045 5.067153 ACATTACAACAACAGCAGCAGTTAA 59.933 36.000 2.38 0.00 0.00 2.01
9535 10046 3.420839 ACAACAACAGCAGCAGTTAAC 57.579 42.857 2.38 0.00 0.00 2.01
9537 10048 3.381272 ACAACAACAGCAGCAGTTAACAT 59.619 39.130 8.61 0.00 0.00 2.71
9538 10049 4.142182 ACAACAACAGCAGCAGTTAACATT 60.142 37.500 8.61 0.00 0.00 2.71
9541 10052 6.331369 ACAACAGCAGCAGTTAACATTATT 57.669 33.333 8.61 0.00 0.00 1.40
9542 10053 6.748132 ACAACAGCAGCAGTTAACATTATTT 58.252 32.000 8.61 0.00 0.00 1.40
9543 10054 7.209475 ACAACAGCAGCAGTTAACATTATTTT 58.791 30.769 8.61 0.00 0.00 1.82
9545 10056 9.357652 CAACAGCAGCAGTTAACATTATTTTAT 57.642 29.630 8.61 0.00 0.00 1.40
9636 10185 6.696148 CCATTAATTTGCTGATTCTCTCTTGC 59.304 38.462 0.00 0.00 0.00 4.01
9658 10207 3.002246 CGTGGCATTATCGTTAACTGCAT 59.998 43.478 15.94 3.70 34.56 3.96
9720 10301 2.374184 AGCCCAAATGCGCTTATTACA 58.626 42.857 9.73 0.00 36.02 2.41
9723 10304 4.119136 GCCCAAATGCGCTTATTACAAAT 58.881 39.130 9.73 0.00 0.00 2.32
9940 10521 0.319641 AAGAAAGCCGACCTCGTGAC 60.320 55.000 0.00 0.00 37.74 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.765807 AGATGCGTCCTCCTGGGG 60.766 66.667 1.23 0.00 35.33 4.96
187 188 2.975799 GTCACCGCTTCCCGCAAA 60.976 61.111 0.00 0.00 39.08 3.68
239 240 2.048127 GAGCGCCGTCTCAACCTT 60.048 61.111 2.29 0.00 33.41 3.50
307 308 2.031163 GAGCACAGGAGTTGGCGT 59.969 61.111 0.00 0.00 0.00 5.68
335 336 3.524648 GAACTTCCCCGTCGTGGCA 62.525 63.158 0.00 0.00 35.87 4.92
342 343 1.697432 TCAAGACATGAACTTCCCCGT 59.303 47.619 0.00 0.00 34.30 5.28
388 389 3.566853 CTCGCCCGTACGACGCTA 61.567 66.667 18.76 8.95 40.91 4.26
421 422 1.226603 CGCCTAGGAACCTTCGACG 60.227 63.158 14.75 0.00 0.00 5.12
472 474 3.066190 CGTCCGGCACCTACTCCA 61.066 66.667 0.00 0.00 0.00 3.86
556 567 2.888863 CTTTCTCTCCTCGCCGCT 59.111 61.111 0.00 0.00 0.00 5.52
589 601 2.835431 GCCCTCTGCCGCTCTCTA 60.835 66.667 0.00 0.00 0.00 2.43
641 655 0.173481 AGCTCGCGTGCTAGATTTGA 59.827 50.000 31.99 0.00 42.10 2.69
676 694 0.323957 GGAGGGGAAAACTAGTGCGT 59.676 55.000 0.00 0.00 0.00 5.24
685 703 2.434331 CAGCGGTGGAGGGGAAAA 59.566 61.111 6.74 0.00 0.00 2.29
731 750 0.728129 GCGCGGTAAACTGGCTTTTC 60.728 55.000 8.83 0.00 0.00 2.29
796 821 0.668706 AGCGTTGACTGTGCTGCTAG 60.669 55.000 0.00 1.97 37.62 3.42
845 870 1.139095 GACGATCAGGACCGTCCAC 59.861 63.158 19.95 7.09 46.54 4.02
901 926 2.257676 GCTGCTCAAAGTGCCTGC 59.742 61.111 0.00 0.00 0.00 4.85
905 930 4.748679 CGCGGCTGCTCAAAGTGC 62.749 66.667 17.03 0.00 39.65 4.40
908 933 3.657835 GAAGCGCGGCTGCTCAAAG 62.658 63.158 17.03 0.00 46.60 2.77
928 953 1.673920 GAGATCTGTGACGAGGGAGAC 59.326 57.143 0.00 0.00 0.00 3.36
939 964 2.159448 GGTGACGTGAGAGAGATCTGTG 60.159 54.545 0.00 0.00 0.00 3.66
940 965 2.088423 GGTGACGTGAGAGAGATCTGT 58.912 52.381 0.00 0.00 0.00 3.41
1218 1243 1.144936 GTCTTCCGAGCAGATGGGG 59.855 63.158 0.00 0.00 0.00 4.96
1350 1375 1.430632 CACATTGCACCAGATCGGC 59.569 57.895 3.85 0.02 39.03 5.54
1395 1420 0.404346 ACCCTCCTCCCCTGGAAAAA 60.404 55.000 0.00 0.00 35.43 1.94
1519 1545 1.432657 GAGACGAAGGCGAGGGTAC 59.567 63.158 0.00 0.00 41.64 3.34
1583 1609 7.169158 TGCCATATTTAGCAAGCTTAAAACT 57.831 32.000 0.00 0.00 35.69 2.66
1639 1665 7.872113 AGGACTGTTTTATTCTCCATTCATC 57.128 36.000 0.00 0.00 0.00 2.92
1664 1690 4.768448 TCAATCACTTACTGGACCGAACTA 59.232 41.667 0.00 0.00 0.00 2.24
1669 1695 5.842907 TCATATCAATCACTTACTGGACCG 58.157 41.667 0.00 0.00 0.00 4.79
1757 1786 5.700373 GCTGCAATGATTTTCCCTTTTACAA 59.300 36.000 0.00 0.00 0.00 2.41
2196 2235 4.876125 AGGCATCAATAGATCAGTGTACG 58.124 43.478 0.00 0.00 30.20 3.67
2321 2360 1.069823 CCGTCAGAATCAGGAGGGATG 59.930 57.143 7.59 0.00 40.59 3.51
2368 2407 5.462405 CCAAAAATGAACAAAATGGCATGG 58.538 37.500 0.00 0.00 0.00 3.66
2448 2487 4.278919 GCTCTAGGGATACAGGTTGAGTAC 59.721 50.000 0.00 0.00 39.74 2.73
2834 3076 0.881118 ACGCAAGGCCATGTACTTTG 59.119 50.000 10.15 1.88 46.39 2.77
3452 3695 4.627467 AGCACACTATTTTCTTGAGCTACG 59.373 41.667 0.00 0.00 35.72 3.51
3466 3709 0.331616 GGGGGTTCCAAGCACACTAT 59.668 55.000 0.00 0.00 35.00 2.12
3493 3736 3.969287 ATGTCCATAGATGTGATCCCG 57.031 47.619 0.00 0.00 0.00 5.14
3542 3785 6.183359 GCCATCACACGTTGAAATCAAATTAC 60.183 38.462 0.00 0.00 37.92 1.89
3884 4129 7.178983 ACATGTGGACCATATTTTCACATTCTT 59.821 33.333 0.05 0.00 43.79 2.52
3984 4229 7.023575 ACGCTTTAGCATTTTGTATCTGAAAG 58.976 34.615 2.29 0.00 42.21 2.62
4221 4466 4.022589 AGTCGTAAGTGTAGCTAGCAAACA 60.023 41.667 18.83 17.42 39.48 2.83
4357 4602 5.241728 AGCAAAGAAGGAAAGTACCACATTC 59.758 40.000 0.00 0.00 0.00 2.67
4410 4655 8.575649 TTCCTATTTGGTTATCTCTTTGAACC 57.424 34.615 0.00 0.00 42.54 3.62
4573 4818 3.976793 ATGCTCGTCATTATGCAAAGG 57.023 42.857 0.00 0.00 38.96 3.11
4832 5077 2.687935 GTCTGTTCCAAAGGTTCAAGCA 59.312 45.455 0.00 0.00 0.00 3.91
5010 5255 5.861997 ACTCTATGTAATGGGGTGGCAACA 61.862 45.833 4.26 0.00 37.01 3.33
5298 5546 5.105473 CCAAGATAGTTTAGAAGGACGACCA 60.105 44.000 6.71 0.00 38.94 4.02
5764 6081 8.016652 TCTAAAAGATGATAGGTTCATAGGGGA 58.983 37.037 0.00 0.00 45.29 4.81
5861 6178 5.576128 AGATCCCTGGTAGATAGAGCTTAC 58.424 45.833 0.00 0.00 0.00 2.34
5957 6371 3.385433 TCGGTGGTCAAAGTTAGACTCAA 59.615 43.478 0.00 0.00 36.29 3.02
5958 6372 2.960384 TCGGTGGTCAAAGTTAGACTCA 59.040 45.455 0.00 0.00 36.29 3.41
5980 6394 7.861630 ACATAGCGCATATTTTACTGGTTAAG 58.138 34.615 11.47 0.00 0.00 1.85
6087 6525 5.957798 TCGTATTTCGAGTCTAACATTGGT 58.042 37.500 0.00 0.00 44.01 3.67
6128 6566 7.178451 TGTGTCTTATGATTTACTCTCTGGTCA 59.822 37.037 0.00 0.00 0.00 4.02
6257 6696 5.215160 GTCAAAACTGTTTGGCTACAGATG 58.785 41.667 21.54 16.81 46.72 2.90
6435 6874 4.142609 ACAAATCTGTGACAGGCGATAT 57.857 40.909 13.33 0.00 33.30 1.63
6478 6917 9.284968 ACTTGTAAGAGCAAACAGTAACAATAT 57.715 29.630 0.00 0.00 0.00 1.28
6479 6918 8.671384 ACTTGTAAGAGCAAACAGTAACAATA 57.329 30.769 0.00 0.00 0.00 1.90
6554 6993 4.455533 TCACACATAAGGACAATTGTCAGC 59.544 41.667 33.42 20.40 46.47 4.26
6632 7071 3.905784 AGACAAACATTAGCAAGCAAGC 58.094 40.909 0.00 0.00 0.00 4.01
6852 7293 5.473162 CACATCTGGGTCAACAAAGTCATAA 59.527 40.000 0.00 0.00 0.00 1.90
6923 7364 3.317455 TTAGGGAGGAAATGCATGCAT 57.683 42.857 27.46 27.46 38.46 3.96
6924 7365 2.824689 TTAGGGAGGAAATGCATGCA 57.175 45.000 25.04 25.04 0.00 3.96
6925 7366 4.141869 ACAATTTAGGGAGGAAATGCATGC 60.142 41.667 11.82 11.82 0.00 4.06
6926 7367 5.603170 ACAATTTAGGGAGGAAATGCATG 57.397 39.130 0.00 0.00 0.00 4.06
6927 7368 6.183360 CGTTACAATTTAGGGAGGAAATGCAT 60.183 38.462 0.00 0.00 0.00 3.96
6965 7406 6.668323 ACGACAAACAGTTTATCCATCAAAG 58.332 36.000 0.00 0.00 0.00 2.77
7042 7483 5.874810 TGCTATAACTTTCTTGTAGTGGCAG 59.125 40.000 0.00 0.00 0.00 4.85
7400 7844 5.529430 TCGACTTCAATAAACTGGAAAAGCA 59.471 36.000 0.00 0.00 0.00 3.91
7403 7847 5.048991 GGCTCGACTTCAATAAACTGGAAAA 60.049 40.000 0.00 0.00 0.00 2.29
7409 7853 3.751698 GGTTGGCTCGACTTCAATAAACT 59.248 43.478 0.00 0.00 0.00 2.66
7507 7953 0.527817 AGATTAGCGTACACTGCGGC 60.528 55.000 0.00 0.00 37.44 6.53
7553 8004 8.934825 GCTGATTCAGATAAGGATTTAAGCTAG 58.065 37.037 17.87 0.00 32.44 3.42
7556 8007 7.742556 AGCTGATTCAGATAAGGATTTAAGC 57.257 36.000 17.87 0.00 32.44 3.09
7557 8008 9.118300 ACAAGCTGATTCAGATAAGGATTTAAG 57.882 33.333 17.87 0.00 32.44 1.85
7558 8009 9.466497 AACAAGCTGATTCAGATAAGGATTTAA 57.534 29.630 17.87 0.00 32.44 1.52
7559 8010 9.466497 AAACAAGCTGATTCAGATAAGGATTTA 57.534 29.630 17.87 0.00 32.44 1.40
7560 8011 7.951347 AACAAGCTGATTCAGATAAGGATTT 57.049 32.000 17.87 0.00 32.44 2.17
7671 8122 3.118334 TCCTGTTTTTACGGTCACCAAGA 60.118 43.478 0.00 0.00 0.00 3.02
7926 8377 9.653287 AGAAATCAACGTCAATATGAGAAACTA 57.347 29.630 0.00 0.00 0.00 2.24
7934 8385 7.007725 GCAGTTTGAGAAATCAACGTCAATATG 59.992 37.037 0.00 0.00 0.00 1.78
8108 8559 6.424207 GTCGTTTCTTCCTGTGAGAACTTTAT 59.576 38.462 0.00 0.00 33.15 1.40
8167 8618 7.496920 CAGCAGTGAGATAATCTGGATTTTGTA 59.503 37.037 0.00 0.00 32.50 2.41
8390 8841 0.317479 GGTCAGTGTAGGCGTCAAGT 59.683 55.000 0.00 0.00 0.00 3.16
8495 8946 2.300152 TCTCAGGACAACTAAGTGGCAG 59.700 50.000 0.00 0.00 0.00 4.85
8524 8975 5.061853 GGGATTACGATTTAGGGAGGAAAC 58.938 45.833 0.00 0.00 0.00 2.78
8543 8994 9.364653 ACGTCTTATATTAGTTTACAGAGGGAT 57.635 33.333 0.00 0.00 0.00 3.85
8624 9075 5.526111 GCCTTCAATATGCATGCAGAAATTT 59.474 36.000 26.69 10.19 0.00 1.82
8635 9086 3.370840 AGTTGAGGCCTTCAATATGCA 57.629 42.857 6.77 0.00 46.85 3.96
8714 9165 8.967664 ACCTACAAACATAAGTTCAGTGTTAA 57.032 30.769 0.00 0.00 36.84 2.01
8838 9289 4.446311 CCCCGATCCTCAATCAGGTATTTT 60.446 45.833 0.00 0.00 43.95 1.82
8861 9312 0.743701 CAGCTGAGTGCCATCCAGAC 60.744 60.000 8.42 0.00 44.23 3.51
8970 9423 8.229253 TCAATCTTGCATATTGAACAGCTTAT 57.771 30.769 17.93 0.00 39.70 1.73
9031 9487 1.599518 TGGCCCTAGCAACACAACG 60.600 57.895 0.00 0.00 42.56 4.10
9096 9580 7.994911 ACTATGAACTCCAGAAATATGCAATCA 59.005 33.333 0.00 0.00 0.00 2.57
9145 9629 4.358851 GCAATGTACAAAGCACTTGTTCA 58.641 39.130 15.55 10.50 46.49 3.18
9189 9673 5.825151 TGTTTTTGACACTACATCATCACCA 59.175 36.000 0.00 0.00 32.00 4.17
9209 9693 8.432805 CCTCTGTCCCATAATATAAGAGTGTTT 58.567 37.037 0.00 0.00 0.00 2.83
9210 9694 7.016661 CCCTCTGTCCCATAATATAAGAGTGTT 59.983 40.741 0.00 0.00 0.00 3.32
9211 9695 6.498651 CCCTCTGTCCCATAATATAAGAGTGT 59.501 42.308 0.00 0.00 0.00 3.55
9212 9696 6.726299 TCCCTCTGTCCCATAATATAAGAGTG 59.274 42.308 0.00 0.00 0.00 3.51
9215 9699 6.047960 TCCTCCCTCTGTCCCATAATATAAGA 59.952 42.308 0.00 0.00 0.00 2.10
9216 9700 6.155393 GTCCTCCCTCTGTCCCATAATATAAG 59.845 46.154 0.00 0.00 0.00 1.73
9217 9701 6.023603 GTCCTCCCTCTGTCCCATAATATAA 58.976 44.000 0.00 0.00 0.00 0.98
9218 9702 5.590818 GTCCTCCCTCTGTCCCATAATATA 58.409 45.833 0.00 0.00 0.00 0.86
9219 9703 4.430441 GTCCTCCCTCTGTCCCATAATAT 58.570 47.826 0.00 0.00 0.00 1.28
9220 9704 3.754172 CGTCCTCCCTCTGTCCCATAATA 60.754 52.174 0.00 0.00 0.00 0.98
9221 9705 2.695585 GTCCTCCCTCTGTCCCATAAT 58.304 52.381 0.00 0.00 0.00 1.28
9222 9706 1.688311 CGTCCTCCCTCTGTCCCATAA 60.688 57.143 0.00 0.00 0.00 1.90
9223 9707 0.106167 CGTCCTCCCTCTGTCCCATA 60.106 60.000 0.00 0.00 0.00 2.74
9224 9708 1.381872 CGTCCTCCCTCTGTCCCAT 60.382 63.158 0.00 0.00 0.00 4.00
9225 9709 2.037367 CGTCCTCCCTCTGTCCCA 59.963 66.667 0.00 0.00 0.00 4.37
9226 9710 0.324091 TAACGTCCTCCCTCTGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
9227 9711 1.777941 ATAACGTCCTCCCTCTGTCC 58.222 55.000 0.00 0.00 0.00 4.02
9228 9712 4.583489 TGATAATAACGTCCTCCCTCTGTC 59.417 45.833 0.00 0.00 0.00 3.51
9229 9713 4.543689 TGATAATAACGTCCTCCCTCTGT 58.456 43.478 0.00 0.00 0.00 3.41
9230 9714 5.730296 ATGATAATAACGTCCTCCCTCTG 57.270 43.478 0.00 0.00 0.00 3.35
9231 9715 7.011382 AGTAATGATAATAACGTCCTCCCTCT 58.989 38.462 0.00 0.00 0.00 3.69
9232 9716 7.229581 AGTAATGATAATAACGTCCTCCCTC 57.770 40.000 0.00 0.00 0.00 4.30
9233 9717 7.070821 ACAAGTAATGATAATAACGTCCTCCCT 59.929 37.037 0.00 0.00 0.00 4.20
9234 9718 7.215085 ACAAGTAATGATAATAACGTCCTCCC 58.785 38.462 0.00 0.00 0.00 4.30
9235 9719 8.658499 AACAAGTAATGATAATAACGTCCTCC 57.342 34.615 0.00 0.00 0.00 4.30
9274 9758 0.100503 GGAAAAGCACAAGCACGTGT 59.899 50.000 18.38 0.68 45.49 4.49
9275 9759 0.929824 CGGAAAAGCACAAGCACGTG 60.930 55.000 12.28 12.28 45.49 4.49
9276 9760 1.355210 CGGAAAAGCACAAGCACGT 59.645 52.632 0.00 0.00 45.49 4.49
9277 9761 0.584396 TACGGAAAAGCACAAGCACG 59.416 50.000 0.00 0.00 45.49 5.34
9278 9762 2.989422 ATACGGAAAAGCACAAGCAC 57.011 45.000 0.00 0.00 45.49 4.40
9279 9763 3.670625 AGTATACGGAAAAGCACAAGCA 58.329 40.909 0.00 0.00 45.49 3.91
9280 9764 5.789710 TTAGTATACGGAAAAGCACAAGC 57.210 39.130 0.00 0.00 42.56 4.01
9281 9765 7.360575 ACTTTAGTATACGGAAAAGCACAAG 57.639 36.000 19.61 6.52 33.25 3.16
9282 9766 8.830201 TTACTTTAGTATACGGAAAAGCACAA 57.170 30.769 19.61 12.70 33.25 3.33
9283 9767 8.830201 TTTACTTTAGTATACGGAAAAGCACA 57.170 30.769 19.61 9.27 33.25 4.57
9292 9776 8.836268 TGGGCAATATTTACTTTAGTATACGG 57.164 34.615 0.00 0.00 0.00 4.02
9389 9887 2.008268 GCAACACAGGCACACAGCTT 62.008 55.000 0.00 0.00 44.79 3.74
9428 9926 3.128589 GCAAATCGGAAAGTTGGCATCTA 59.871 43.478 0.00 0.00 0.00 1.98
9443 9942 1.695813 TGCCGAAACAATGCAAATCG 58.304 45.000 0.00 0.00 30.85 3.34
9599 10148 9.752961 TCAGCAAATTAATGGTATGAAATGATG 57.247 29.630 0.00 0.00 0.00 3.07
9636 10185 2.350192 TGCAGTTAACGATAATGCCACG 59.650 45.455 12.60 0.00 36.04 4.94
9720 10301 0.890683 CGGCCAGAAAAGCTCCATTT 59.109 50.000 2.24 0.00 0.00 2.32
9723 10304 1.302511 GTCGGCCAGAAAAGCTCCA 60.303 57.895 2.24 0.00 0.00 3.86
9805 10386 3.881952 ATGCAGACGTTGAGCCGCA 62.882 57.895 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.