Multiple sequence alignment - TraesCS2D01G292200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G292200 chr2D 100.000 6557 0 0 1 6557 374103869 374110425 0.000000e+00 12109
1 TraesCS2D01G292200 chr2D 87.143 490 53 9 6071 6554 16084754 16085239 1.240000e-151 547
2 TraesCS2D01G292200 chr2D 87.619 210 26 0 3 212 325325433 325325642 1.830000e-60 244
3 TraesCS2D01G292200 chr2B 96.145 2750 97 7 3055 5800 444544099 444546843 0.000000e+00 4482
4 TraesCS2D01G292200 chr2B 95.204 2523 85 15 241 2743 444541221 444543727 0.000000e+00 3956
5 TraesCS2D01G292200 chr2B 83.845 489 53 17 6071 6557 402543032 402543496 6.030000e-120 442
6 TraesCS2D01G292200 chr2B 94.332 247 12 1 2813 3057 444543740 444543986 1.730000e-100 377
7 TraesCS2D01G292200 chr2B 88.079 151 16 2 5850 6000 444605371 444605519 1.880000e-40 178
8 TraesCS2D01G292200 chr2A 93.601 2969 106 30 3055 6001 507071267 507074173 0.000000e+00 4353
9 TraesCS2D01G292200 chr2A 94.711 2817 107 13 243 3057 507068388 507071164 0.000000e+00 4338
10 TraesCS2D01G292200 chr1D 90.984 488 39 3 6074 6557 202285507 202285021 0.000000e+00 652
11 TraesCS2D01G292200 chr1D 87.500 488 53 5 6074 6557 22506994 22506511 2.070000e-154 556
12 TraesCS2D01G292200 chr1D 88.824 340 33 5 6074 6412 430422710 430422375 4.730000e-111 412
13 TraesCS2D01G292200 chr6D 90.081 494 39 1 6074 6557 219784818 219785311 3.340000e-177 632
14 TraesCS2D01G292200 chr6D 88.477 486 47 5 6074 6557 352856871 352856393 4.410000e-161 579
15 TraesCS2D01G292200 chr6D 86.190 210 29 0 3 212 464536571 464536780 1.840000e-55 228
16 TraesCS2D01G292200 chr5D 88.344 489 49 5 6074 6557 442669978 442670463 1.230000e-161 580
17 TraesCS2D01G292200 chr5D 86.854 213 26 2 3 215 492185340 492185550 3.060000e-58 237
18 TraesCS2D01G292200 chr3D 87.935 489 48 7 6074 6556 472199841 472200324 3.430000e-157 566
19 TraesCS2D01G292200 chr3D 89.698 398 38 2 6160 6557 579381048 579381442 7.590000e-139 505
20 TraesCS2D01G292200 chr3D 83.162 487 65 16 6074 6554 560766046 560765571 4.700000e-116 429
21 TraesCS2D01G292200 chr3B 82.488 434 57 9 6074 6496 797716328 797715903 4.830000e-96 363
22 TraesCS2D01G292200 chr7A 87.850 214 23 3 3 214 293302602 293302390 1.410000e-61 248
23 TraesCS2D01G292200 chr5B 87.019 208 27 0 4 211 607139967 607140174 1.100000e-57 235
24 TraesCS2D01G292200 chr5B 86.538 208 28 0 4 211 606990159 606990366 5.110000e-56 230
25 TraesCS2D01G292200 chr5A 87.624 202 23 2 12 212 676322626 676322826 3.950000e-57 233
26 TraesCS2D01G292200 chr4B 85.915 213 28 2 1 212 655779940 655779729 6.620000e-55 226
27 TraesCS2D01G292200 chr7B 85.388 219 29 3 3 219 431680276 431680493 2.380000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G292200 chr2D 374103869 374110425 6556 False 12109.000000 12109 100.000 1 6557 1 chr2D.!!$F3 6556
1 TraesCS2D01G292200 chr2B 444541221 444546843 5622 False 2938.333333 4482 95.227 241 5800 3 chr2B.!!$F3 5559
2 TraesCS2D01G292200 chr2A 507068388 507074173 5785 False 4345.500000 4353 94.156 243 6001 2 chr2A.!!$F1 5758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.037697 TTGATCGTACGCAAGGCAGT 60.038 50.0 11.24 0.0 46.39 4.40 F
237 238 0.037697 TGATCGTACGCAAGGCAGTT 60.038 50.0 11.24 0.0 46.39 3.16 F
1140 1147 1.011451 GTCACTCTCGCTTCAGGTGC 61.011 60.0 0.00 0.0 0.00 5.01 F
1702 1712 0.747644 CGGTGTCCATATTGCAGGCA 60.748 55.0 0.00 0.0 0.00 4.75 F
2946 2973 0.603975 GATGCTATGGGGGAGCGAAC 60.604 60.0 0.00 0.0 43.19 3.95 F
3150 3294 0.693049 AGGGCTAGGTTTCACTGGTG 59.307 55.0 0.00 0.0 0.00 4.17 F
4543 4702 0.742281 ATTTCGCTGCATGACGAGCT 60.742 50.0 0.00 0.0 39.81 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1265 0.322008 GTGCTCCCACCAGAAGAAGG 60.322 60.000 0.00 0.00 35.92 3.46 R
1323 1330 0.443869 CAACGACCTTGATCTTGGCG 59.556 55.000 14.27 14.27 30.42 5.69 R
2649 2675 0.896940 CCAAACCTGCCATGCTCACT 60.897 55.000 0.00 0.00 0.00 3.41 R
3150 3294 0.322546 CCACCTGGGTGTTAAGGAGC 60.323 60.000 17.18 0.00 44.02 4.70 R
4045 4197 0.322997 TAAAATGTGGCCCCAGTCGG 60.323 55.000 0.00 0.00 0.00 4.79 R
4662 4821 1.618343 TGAGTGTTGAATCTGCCTCGA 59.382 47.619 0.00 0.00 0.00 4.04 R
6455 6637 0.033503 CCGGGAGGTTGCCCTTTTAT 60.034 55.000 0.00 0.00 46.44 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.248043 CACGCTTTCCCAGATCCAA 57.752 52.632 0.00 0.00 0.00 3.53
19 20 1.533625 CACGCTTTCCCAGATCCAAA 58.466 50.000 0.00 0.00 0.00 3.28
20 21 2.094675 CACGCTTTCCCAGATCCAAAT 58.905 47.619 0.00 0.00 0.00 2.32
21 22 2.493278 CACGCTTTCCCAGATCCAAATT 59.507 45.455 0.00 0.00 0.00 1.82
22 23 3.056607 CACGCTTTCCCAGATCCAAATTT 60.057 43.478 0.00 0.00 0.00 1.82
23 24 4.157656 CACGCTTTCCCAGATCCAAATTTA 59.842 41.667 0.00 0.00 0.00 1.40
24 25 4.770010 ACGCTTTCCCAGATCCAAATTTAA 59.230 37.500 0.00 0.00 0.00 1.52
25 26 5.102313 CGCTTTCCCAGATCCAAATTTAAC 58.898 41.667 0.00 0.00 0.00 2.01
26 27 5.419542 GCTTTCCCAGATCCAAATTTAACC 58.580 41.667 0.00 0.00 0.00 2.85
27 28 5.650543 CTTTCCCAGATCCAAATTTAACCG 58.349 41.667 0.00 0.00 0.00 4.44
28 29 4.310022 TCCCAGATCCAAATTTAACCGT 57.690 40.909 0.00 0.00 0.00 4.83
29 30 5.438698 TCCCAGATCCAAATTTAACCGTA 57.561 39.130 0.00 0.00 0.00 4.02
30 31 5.817784 TCCCAGATCCAAATTTAACCGTAA 58.182 37.500 0.00 0.00 0.00 3.18
31 32 6.246919 TCCCAGATCCAAATTTAACCGTAAA 58.753 36.000 0.00 0.00 33.76 2.01
32 33 6.893005 TCCCAGATCCAAATTTAACCGTAAAT 59.107 34.615 0.00 0.00 40.88 1.40
44 45 8.953507 ATTTAACCGTAAATTTAACCAACGAG 57.046 30.769 11.09 5.19 36.69 4.18
45 46 7.721286 TTAACCGTAAATTTAACCAACGAGA 57.279 32.000 11.09 0.00 35.66 4.04
46 47 5.596268 ACCGTAAATTTAACCAACGAGAC 57.404 39.130 11.09 0.00 35.66 3.36
47 48 4.452114 ACCGTAAATTTAACCAACGAGACC 59.548 41.667 11.09 0.00 35.66 3.85
48 49 4.434593 CCGTAAATTTAACCAACGAGACCG 60.435 45.833 11.09 1.83 42.50 4.79
49 50 4.385447 CGTAAATTTAACCAACGAGACCGA 59.615 41.667 4.77 0.00 39.50 4.69
50 51 4.737353 AAATTTAACCAACGAGACCGAC 57.263 40.909 0.00 0.00 39.50 4.79
51 52 3.672767 ATTTAACCAACGAGACCGACT 57.327 42.857 0.00 0.00 39.50 4.18
52 53 2.427232 TTAACCAACGAGACCGACTG 57.573 50.000 0.00 0.00 39.50 3.51
53 54 0.038892 TAACCAACGAGACCGACTGC 60.039 55.000 0.00 0.00 39.50 4.40
54 55 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
79 80 6.618287 CGGGAGCAAAAATTATATCACTGA 57.382 37.500 0.00 0.00 0.00 3.41
80 81 7.026631 CGGGAGCAAAAATTATATCACTGAA 57.973 36.000 0.00 0.00 0.00 3.02
81 82 7.651808 CGGGAGCAAAAATTATATCACTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
82 83 8.137437 CGGGAGCAAAAATTATATCACTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
83 84 9.468532 GGGAGCAAAAATTATATCACTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
84 85 9.173939 GGAGCAAAAATTATATCACTGAATTCG 57.826 33.333 0.04 0.00 0.00 3.34
85 86 9.722056 GAGCAAAAATTATATCACTGAATTCGT 57.278 29.630 0.04 0.00 0.00 3.85
123 124 9.468532 GAATTCAGTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
124 125 6.618287 TCAGTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
125 126 6.119536 TCAGTGATATAATTTTTGCTCCCGT 58.880 36.000 0.00 0.00 0.00 5.28
126 127 6.260050 TCAGTGATATAATTTTTGCTCCCGTC 59.740 38.462 0.00 0.00 0.00 4.79
127 128 5.236478 AGTGATATAATTTTTGCTCCCGTCG 59.764 40.000 0.00 0.00 0.00 5.12
128 129 5.007332 GTGATATAATTTTTGCTCCCGTCGT 59.993 40.000 0.00 0.00 0.00 4.34
129 130 6.201425 GTGATATAATTTTTGCTCCCGTCGTA 59.799 38.462 0.00 0.00 0.00 3.43
130 131 6.762187 TGATATAATTTTTGCTCCCGTCGTAA 59.238 34.615 0.00 0.00 0.00 3.18
131 132 7.442969 TGATATAATTTTTGCTCCCGTCGTAAT 59.557 33.333 0.00 0.00 0.00 1.89
132 133 4.351131 AATTTTTGCTCCCGTCGTAATC 57.649 40.909 0.00 0.00 0.00 1.75
133 134 1.352114 TTTTGCTCCCGTCGTAATCG 58.648 50.000 0.00 0.00 38.55 3.34
134 135 0.458889 TTTGCTCCCGTCGTAATCGG 60.459 55.000 0.00 0.00 46.49 4.18
135 136 1.597797 TTGCTCCCGTCGTAATCGGT 61.598 55.000 3.78 0.00 45.63 4.69
136 137 1.298938 GCTCCCGTCGTAATCGGTC 60.299 63.158 3.78 0.00 45.63 4.79
137 138 1.722636 GCTCCCGTCGTAATCGGTCT 61.723 60.000 3.78 0.00 45.63 3.85
138 139 0.307146 CTCCCGTCGTAATCGGTCTC 59.693 60.000 3.78 0.00 45.63 3.36
139 140 1.010350 CCCGTCGTAATCGGTCTCG 60.010 63.158 3.78 0.00 45.63 4.04
155 156 6.201517 TCGGTCTCGATAGTTAAATTTACGG 58.798 40.000 0.00 0.00 40.88 4.02
156 157 5.973565 CGGTCTCGATAGTTAAATTTACGGT 59.026 40.000 0.00 0.00 39.00 4.83
157 158 6.473455 CGGTCTCGATAGTTAAATTTACGGTT 59.527 38.462 0.00 0.00 39.00 4.44
158 159 7.643764 CGGTCTCGATAGTTAAATTTACGGTTA 59.356 37.037 0.00 0.00 39.00 2.85
159 160 9.301153 GGTCTCGATAGTTAAATTTACGGTTAA 57.699 33.333 0.00 0.00 37.40 2.01
172 173 9.893305 AAATTTACGGTTAAACTTGAATCTCAG 57.107 29.630 0.00 0.00 29.77 3.35
173 174 7.429636 TTTACGGTTAAACTTGAATCTCAGG 57.570 36.000 0.00 0.00 0.00 3.86
174 175 5.223449 ACGGTTAAACTTGAATCTCAGGA 57.777 39.130 0.00 0.00 0.00 3.86
175 176 5.617252 ACGGTTAAACTTGAATCTCAGGAA 58.383 37.500 0.00 0.00 0.00 3.36
176 177 5.701290 ACGGTTAAACTTGAATCTCAGGAAG 59.299 40.000 0.00 0.00 0.00 3.46
177 178 5.390991 CGGTTAAACTTGAATCTCAGGAAGC 60.391 44.000 0.00 0.00 0.00 3.86
178 179 5.390991 GGTTAAACTTGAATCTCAGGAAGCG 60.391 44.000 0.00 0.00 0.00 4.68
179 180 1.731720 ACTTGAATCTCAGGAAGCGC 58.268 50.000 0.00 0.00 0.00 5.92
180 181 0.649475 CTTGAATCTCAGGAAGCGCG 59.351 55.000 0.00 0.00 0.00 6.86
181 182 0.740868 TTGAATCTCAGGAAGCGCGG 60.741 55.000 8.83 0.00 0.00 6.46
182 183 1.141881 GAATCTCAGGAAGCGCGGA 59.858 57.895 8.83 0.00 0.00 5.54
183 184 0.249657 GAATCTCAGGAAGCGCGGAT 60.250 55.000 8.83 0.00 0.00 4.18
184 185 0.531532 AATCTCAGGAAGCGCGGATG 60.532 55.000 8.83 0.00 0.00 3.51
185 186 2.985512 ATCTCAGGAAGCGCGGATGC 62.986 60.000 8.83 0.00 37.91 3.91
186 187 4.081185 TCAGGAAGCGCGGATGCA 62.081 61.111 8.83 0.00 42.97 3.96
187 188 3.869272 CAGGAAGCGCGGATGCAC 61.869 66.667 8.83 0.00 42.97 4.57
188 189 4.087892 AGGAAGCGCGGATGCACT 62.088 61.111 8.83 0.00 42.97 4.40
189 190 3.869272 GGAAGCGCGGATGCACTG 61.869 66.667 8.83 0.00 42.97 3.66
190 191 3.869272 GAAGCGCGGATGCACTGG 61.869 66.667 8.83 0.00 42.97 4.00
191 192 4.393155 AAGCGCGGATGCACTGGA 62.393 61.111 8.83 0.00 42.97 3.86
192 193 3.687321 AAGCGCGGATGCACTGGAT 62.687 57.895 8.83 0.00 42.97 3.41
193 194 3.204827 GCGCGGATGCACTGGATT 61.205 61.111 8.83 0.00 42.97 3.01
194 195 2.711311 CGCGGATGCACTGGATTG 59.289 61.111 0.00 0.00 42.97 2.67
195 196 2.108514 CGCGGATGCACTGGATTGT 61.109 57.895 0.00 0.00 42.97 2.71
196 197 1.430632 GCGGATGCACTGGATTGTG 59.569 57.895 0.00 0.00 42.15 3.33
197 198 1.026182 GCGGATGCACTGGATTGTGA 61.026 55.000 0.00 0.00 42.15 3.58
198 199 1.452110 CGGATGCACTGGATTGTGAA 58.548 50.000 0.00 0.00 40.12 3.18
199 200 1.811965 CGGATGCACTGGATTGTGAAA 59.188 47.619 0.00 0.00 40.12 2.69
200 201 2.424601 CGGATGCACTGGATTGTGAAAT 59.575 45.455 0.00 0.00 40.12 2.17
201 202 3.732774 CGGATGCACTGGATTGTGAAATG 60.733 47.826 0.00 0.00 40.12 2.32
202 203 3.429822 GGATGCACTGGATTGTGAAATGG 60.430 47.826 0.00 0.00 40.12 3.16
203 204 2.874014 TGCACTGGATTGTGAAATGGA 58.126 42.857 0.00 0.00 40.12 3.41
204 205 2.821378 TGCACTGGATTGTGAAATGGAG 59.179 45.455 0.00 0.00 40.12 3.86
205 206 2.165030 GCACTGGATTGTGAAATGGAGG 59.835 50.000 0.00 0.00 40.12 4.30
206 207 2.756760 CACTGGATTGTGAAATGGAGGG 59.243 50.000 0.00 0.00 40.12 4.30
207 208 2.649312 ACTGGATTGTGAAATGGAGGGA 59.351 45.455 0.00 0.00 0.00 4.20
208 209 3.285484 CTGGATTGTGAAATGGAGGGAG 58.715 50.000 0.00 0.00 0.00 4.30
209 210 2.649312 TGGATTGTGAAATGGAGGGAGT 59.351 45.455 0.00 0.00 0.00 3.85
210 211 3.849574 TGGATTGTGAAATGGAGGGAGTA 59.150 43.478 0.00 0.00 0.00 2.59
211 212 4.478317 TGGATTGTGAAATGGAGGGAGTAT 59.522 41.667 0.00 0.00 0.00 2.12
212 213 4.823989 GGATTGTGAAATGGAGGGAGTATG 59.176 45.833 0.00 0.00 0.00 2.39
213 214 5.397899 GGATTGTGAAATGGAGGGAGTATGA 60.398 44.000 0.00 0.00 0.00 2.15
214 215 5.512942 TTGTGAAATGGAGGGAGTATGAA 57.487 39.130 0.00 0.00 0.00 2.57
215 216 5.512942 TGTGAAATGGAGGGAGTATGAAA 57.487 39.130 0.00 0.00 0.00 2.69
216 217 5.886609 TGTGAAATGGAGGGAGTATGAAAA 58.113 37.500 0.00 0.00 0.00 2.29
217 218 6.493166 TGTGAAATGGAGGGAGTATGAAAAT 58.507 36.000 0.00 0.00 0.00 1.82
218 219 6.953520 TGTGAAATGGAGGGAGTATGAAAATT 59.046 34.615 0.00 0.00 0.00 1.82
219 220 7.093814 TGTGAAATGGAGGGAGTATGAAAATTG 60.094 37.037 0.00 0.00 0.00 2.32
220 221 7.122650 GTGAAATGGAGGGAGTATGAAAATTGA 59.877 37.037 0.00 0.00 0.00 2.57
221 222 7.840716 TGAAATGGAGGGAGTATGAAAATTGAT 59.159 33.333 0.00 0.00 0.00 2.57
222 223 7.830099 AATGGAGGGAGTATGAAAATTGATC 57.170 36.000 0.00 0.00 0.00 2.92
223 224 5.368145 TGGAGGGAGTATGAAAATTGATCG 58.632 41.667 0.00 0.00 0.00 3.69
224 225 5.104527 TGGAGGGAGTATGAAAATTGATCGT 60.105 40.000 0.00 0.00 0.00 3.73
225 226 6.099125 TGGAGGGAGTATGAAAATTGATCGTA 59.901 38.462 0.00 0.00 0.00 3.43
226 227 6.424207 GGAGGGAGTATGAAAATTGATCGTAC 59.576 42.308 12.67 12.67 38.83 3.67
227 228 5.983720 AGGGAGTATGAAAATTGATCGTACG 59.016 40.000 9.53 9.53 41.84 3.67
228 229 5.333111 GGGAGTATGAAAATTGATCGTACGC 60.333 44.000 11.24 14.18 41.84 4.42
229 230 5.233476 GGAGTATGAAAATTGATCGTACGCA 59.767 40.000 11.24 0.10 41.84 5.24
230 231 6.237996 GGAGTATGAAAATTGATCGTACGCAA 60.238 38.462 11.24 10.58 41.84 4.85
231 232 6.705782 AGTATGAAAATTGATCGTACGCAAG 58.294 36.000 11.24 0.00 41.84 4.01
232 233 4.335082 TGAAAATTGATCGTACGCAAGG 57.665 40.909 11.24 0.00 46.39 3.61
233 234 2.825086 AAATTGATCGTACGCAAGGC 57.175 45.000 11.24 0.00 46.39 4.35
234 235 1.732941 AATTGATCGTACGCAAGGCA 58.267 45.000 11.24 0.89 46.39 4.75
235 236 1.290203 ATTGATCGTACGCAAGGCAG 58.710 50.000 11.24 0.00 46.39 4.85
236 237 0.037697 TTGATCGTACGCAAGGCAGT 60.038 50.000 11.24 0.00 46.39 4.40
237 238 0.037697 TGATCGTACGCAAGGCAGTT 60.038 50.000 11.24 0.00 46.39 3.16
238 239 1.076332 GATCGTACGCAAGGCAGTTT 58.924 50.000 11.24 0.00 46.39 2.66
239 240 1.060698 GATCGTACGCAAGGCAGTTTC 59.939 52.381 11.24 0.00 46.39 2.78
264 265 6.403200 CGCTTTTAGATAGTGCTAGCCAAAAA 60.403 38.462 13.29 7.34 0.00 1.94
273 274 3.004734 GTGCTAGCCAAAAACTCATGTGT 59.995 43.478 13.29 0.00 0.00 3.72
301 302 3.806316 AATAAAACAACGAGACAGCCG 57.194 42.857 0.00 0.00 0.00 5.52
333 334 5.633601 GCTACAATAAAACAAACAAGGCTCC 59.366 40.000 0.00 0.00 0.00 4.70
340 341 5.669164 AAACAAACAAGGCTCCAACTTTA 57.331 34.783 0.00 0.00 0.00 1.85
397 398 7.783042 AGAAATCTAACACCTGGTGATAGTAC 58.217 38.462 31.08 22.63 39.09 2.73
461 462 5.705441 TCTTTACAGTAGCAAGGGACAATTG 59.295 40.000 3.24 3.24 0.00 2.32
475 476 7.104043 AGGGACAATTGTACAATTCATCATG 57.896 36.000 27.12 19.10 38.84 3.07
482 483 7.828508 ATTGTACAATTCATCATGCCACTAT 57.171 32.000 15.47 0.00 0.00 2.12
524 525 2.743928 CCAGCTGTTCCGGCTCAC 60.744 66.667 13.81 0.00 43.23 3.51
525 526 2.031012 CAGCTGTTCCGGCTCACA 59.969 61.111 5.25 0.00 43.23 3.58
526 527 2.031163 AGCTGTTCCGGCTCACAC 59.969 61.111 0.00 0.00 43.23 3.82
527 528 2.280797 GCTGTTCCGGCTCACACA 60.281 61.111 0.00 0.00 32.24 3.72
528 529 2.320587 GCTGTTCCGGCTCACACAG 61.321 63.158 0.00 4.92 39.79 3.66
931 938 3.726291 ACAAACCAACCTCCGAATTTG 57.274 42.857 0.00 0.00 34.10 2.32
1140 1147 1.011451 GTCACTCTCGCTTCAGGTGC 61.011 60.000 0.00 0.00 0.00 5.01
1258 1265 3.626217 CGAGGCTATTAACCCAAGGAAAC 59.374 47.826 0.00 0.00 0.00 2.78
1268 1275 2.158460 ACCCAAGGAAACCTTCTTCTGG 60.158 50.000 0.00 0.00 42.67 3.86
1323 1330 1.702491 GCCAGGACGATTACAACGCC 61.702 60.000 0.00 0.00 0.00 5.68
1419 1426 1.459592 GGTGTCGAGTTTTGGATCGTG 59.540 52.381 0.00 0.00 39.86 4.35
1501 1508 2.363147 AGGAGCTCACTCGGGGTC 60.363 66.667 17.19 0.00 44.48 4.46
1702 1712 0.747644 CGGTGTCCATATTGCAGGCA 60.748 55.000 0.00 0.00 0.00 4.75
2058 2068 2.943033 CGTAAGGCGGGAGAATGAATTT 59.057 45.455 0.00 0.00 36.85 1.82
2059 2069 4.124238 CGTAAGGCGGGAGAATGAATTTA 58.876 43.478 0.00 0.00 36.85 1.40
2123 2133 1.676967 CTCTTGCAGGTTCCTGGGC 60.677 63.158 18.81 7.47 34.85 5.36
2277 2287 1.725641 TTTGCTCCACACATCTAGCG 58.274 50.000 0.00 0.00 37.80 4.26
2341 2359 4.514816 TGAGAAAACTTCATTGCATGACGA 59.485 37.500 0.00 0.00 39.39 4.20
2348 2366 3.525268 TCATTGCATGACGAAGCTAGA 57.475 42.857 0.00 0.00 33.59 2.43
2415 2433 4.386049 GTGATGTTGAGTAGTGTTCGAAGG 59.614 45.833 0.00 0.00 0.00 3.46
2436 2454 5.828747 AGGTTTCGTTTTAAAAAGAGCTCC 58.171 37.500 10.93 16.23 0.00 4.70
2447 2465 2.086054 AAGAGCTCCTTTACAGTGCG 57.914 50.000 10.93 0.00 0.00 5.34
2465 2483 4.827284 AGTGCGCCCAAATTATTATTAGCT 59.173 37.500 4.18 0.00 0.00 3.32
2531 2556 9.892130 CTCCAAGAAAAGTATTATGGAGTACTT 57.108 33.333 10.68 0.00 45.62 2.24
2580 2606 6.492429 GGTTTCAGGGGTGAAATAGTAACTTT 59.508 38.462 4.00 0.00 39.58 2.66
2631 2657 3.701542 AGATCTATGGTCACACACGTCAT 59.298 43.478 0.00 0.00 0.00 3.06
2678 2704 2.670934 AGGTTTGGCTGCAGCGAG 60.671 61.111 31.19 0.00 43.26 5.03
2838 2865 1.402968 CACAAATTGCCCTCAGATCCG 59.597 52.381 0.00 0.00 0.00 4.18
2946 2973 0.603975 GATGCTATGGGGGAGCGAAC 60.604 60.000 0.00 0.00 43.19 3.95
3027 3054 3.181466 TGTGTGATGCCATAGTTATCGCT 60.181 43.478 0.00 0.00 33.65 4.93
3040 3067 1.048160 TATCGCTGCTCCCATCACCA 61.048 55.000 0.00 0.00 0.00 4.17
3150 3294 0.693049 AGGGCTAGGTTTCACTGGTG 59.307 55.000 0.00 0.00 0.00 4.17
3378 3524 7.654520 TGTCCTACACTGTTATTGTTGACTAAC 59.345 37.037 0.00 0.00 37.32 2.34
3503 3652 1.065199 ACATGCCAGGTCGACATTGAT 60.065 47.619 18.91 3.13 0.00 2.57
3541 3690 4.303086 TCTTGGTATAGCGCTGTAGTTC 57.697 45.455 22.90 10.77 0.00 3.01
3651 3802 2.305343 AGGCAAGTCAAGAGCAAGAGAT 59.695 45.455 0.00 0.00 0.00 2.75
3800 3951 3.706802 TTTTGCTGATTTTCTCACGCA 57.293 38.095 0.00 0.00 36.72 5.24
4045 4197 6.368243 GTGTACAGCTAGTTTCCCTTCTAAAC 59.632 42.308 0.00 0.00 37.14 2.01
4262 4414 4.870123 TTGGAAGTTGGAAATGACATGG 57.130 40.909 0.00 0.00 0.00 3.66
4272 4424 4.283978 TGGAAATGACATGGTCAAGCAAAT 59.716 37.500 2.87 0.00 45.96 2.32
4273 4425 5.221682 TGGAAATGACATGGTCAAGCAAATT 60.222 36.000 2.87 0.00 45.96 1.82
4275 4427 6.205270 GGAAATGACATGGTCAAGCAAATTTT 59.795 34.615 2.87 0.00 45.96 1.82
4277 4429 8.674263 AAATGACATGGTCAAGCAAATTTTTA 57.326 26.923 2.87 0.00 45.96 1.52
4543 4702 0.742281 ATTTCGCTGCATGACGAGCT 60.742 50.000 0.00 0.00 39.81 4.09
4547 4706 1.520120 GCTGCATGACGAGCTAGCA 60.520 57.895 18.83 0.00 36.68 3.49
4569 4728 5.576384 GCATTTACCAACATGTACACATTGG 59.424 40.000 27.22 27.22 39.17 3.16
4606 4765 9.191995 GTTAACATACAAGTTTGATTTCCCTTG 57.808 33.333 0.00 0.00 40.05 3.61
4631 4790 2.837498 GGCAACTTGTTCCTGCAAAAT 58.163 42.857 0.00 0.00 37.83 1.82
4648 4807 7.859377 CCTGCAAAATTATACTATCAGTTGCTG 59.141 37.037 0.00 0.00 40.51 4.41
4683 4842 2.037121 TCGAGGCAGATTCAACACTCAA 59.963 45.455 0.00 0.00 0.00 3.02
4746 4913 8.177119 ACTTCCTATTTCACAAAACTGCAATA 57.823 30.769 0.00 0.00 0.00 1.90
4931 5098 0.968405 GCTTTCATGTTTCCAGGGCA 59.032 50.000 0.00 0.00 0.00 5.36
4996 5164 6.466885 TTCTAATGTCTAGGGTAAGCACTC 57.533 41.667 0.00 0.00 0.00 3.51
5108 5276 4.649674 GGTTCTGTCATAGACCCATCACTA 59.350 45.833 0.00 0.00 37.88 2.74
5203 5371 6.219473 TGGGTTACATTTAACATTTGCACTG 58.781 36.000 4.26 0.00 39.64 3.66
5659 5828 4.095782 CAGACCTGTAGAGTCTAGCTGTTC 59.904 50.000 0.00 0.00 42.69 3.18
5721 5890 8.924511 TCTTTCTGTTCTTTATCTTGGAATGT 57.075 30.769 0.00 0.00 0.00 2.71
5723 5892 9.403110 CTTTCTGTTCTTTATCTTGGAATGTTG 57.597 33.333 0.00 0.00 0.00 3.33
5806 5987 2.106332 CCTATCGCGTGTCCCCAC 59.894 66.667 5.77 0.00 38.27 4.61
5809 5990 0.597637 CTATCGCGTGTCCCCACATC 60.598 60.000 5.77 0.00 41.93 3.06
5815 5996 0.976073 CGTGTCCCCACATCCCTACT 60.976 60.000 0.00 0.00 41.93 2.57
5816 5997 1.286248 GTGTCCCCACATCCCTACTT 58.714 55.000 0.00 0.00 41.44 2.24
5817 5998 1.633945 GTGTCCCCACATCCCTACTTT 59.366 52.381 0.00 0.00 41.44 2.66
5818 5999 2.041216 GTGTCCCCACATCCCTACTTTT 59.959 50.000 0.00 0.00 41.44 2.27
5819 6000 2.719705 TGTCCCCACATCCCTACTTTTT 59.280 45.455 0.00 0.00 0.00 1.94
5840 6021 4.664150 TTTTTGAGAAACACCCCACATC 57.336 40.909 0.00 0.00 0.00 3.06
5841 6022 2.286365 TTGAGAAACACCCCACATCC 57.714 50.000 0.00 0.00 0.00 3.51
5842 6023 0.404040 TGAGAAACACCCCACATCCC 59.596 55.000 0.00 0.00 0.00 3.85
5843 6024 0.698818 GAGAAACACCCCACATCCCT 59.301 55.000 0.00 0.00 0.00 4.20
5844 6025 1.913419 GAGAAACACCCCACATCCCTA 59.087 52.381 0.00 0.00 0.00 3.53
5845 6026 1.633945 AGAAACACCCCACATCCCTAC 59.366 52.381 0.00 0.00 0.00 3.18
5846 6027 1.633945 GAAACACCCCACATCCCTACT 59.366 52.381 0.00 0.00 0.00 2.57
5847 6028 1.755200 AACACCCCACATCCCTACTT 58.245 50.000 0.00 0.00 0.00 2.24
5848 6029 2.653543 ACACCCCACATCCCTACTTA 57.346 50.000 0.00 0.00 0.00 2.24
5857 6038 5.189934 CCCACATCCCTACTTATTATCTCCC 59.810 48.000 0.00 0.00 0.00 4.30
5864 6045 4.778427 CCTACTTATTATCTCCCTGTCCCC 59.222 50.000 0.00 0.00 0.00 4.81
5878 6059 3.371595 CCTGTCCCCTTCATCGGTTATTT 60.372 47.826 0.00 0.00 0.00 1.40
5919 6100 2.627699 TCAAACAGGCCAAAGTTGATCC 59.372 45.455 5.01 0.00 0.00 3.36
5927 6108 2.608623 CCAAAGTTGATCCCCCAAAGT 58.391 47.619 0.00 0.00 0.00 2.66
5936 6117 2.785357 TCCCCCAAAGTTTTGATGGT 57.215 45.000 6.18 0.00 40.55 3.55
5937 6118 2.604139 TCCCCCAAAGTTTTGATGGTC 58.396 47.619 6.18 0.00 40.55 4.02
5955 6136 0.952280 TCGTTAGGGCATCTCTAGCG 59.048 55.000 4.00 4.00 40.88 4.26
5956 6137 0.039074 CGTTAGGGCATCTCTAGCGG 60.039 60.000 2.65 0.00 37.63 5.52
5957 6138 0.318762 GTTAGGGCATCTCTAGCGGG 59.681 60.000 0.00 0.00 0.00 6.13
5959 6140 0.539901 TAGGGCATCTCTAGCGGGTC 60.540 60.000 0.00 0.00 0.00 4.46
5991 6173 4.834496 TCAAATTGGAGGAGCAAAAGTGAT 59.166 37.500 0.00 0.00 0.00 3.06
6003 6185 3.684305 GCAAAAGTGATATTTTGGTGGGC 59.316 43.478 12.36 0.00 45.88 5.36
6004 6186 4.802248 GCAAAAGTGATATTTTGGTGGGCA 60.802 41.667 12.36 0.00 45.88 5.36
6005 6187 5.490159 CAAAAGTGATATTTTGGTGGGCAT 58.510 37.500 4.41 0.00 43.37 4.40
6006 6188 5.343307 AAAGTGATATTTTGGTGGGCATC 57.657 39.130 0.00 0.00 0.00 3.91
6007 6189 3.299503 AGTGATATTTTGGTGGGCATCC 58.700 45.455 0.00 0.00 0.00 3.51
6008 6190 3.030291 GTGATATTTTGGTGGGCATCCA 58.970 45.455 0.00 0.00 41.58 3.41
6016 6198 3.338250 TGGGCATCCACCTGGTCC 61.338 66.667 0.00 0.00 38.32 4.46
6017 6199 4.489771 GGGCATCCACCTGGTCCG 62.490 72.222 0.00 0.00 36.34 4.79
6020 6202 3.716195 CATCCACCTGGTCCGCCA 61.716 66.667 0.00 0.00 43.73 5.69
6021 6203 3.717294 ATCCACCTGGTCCGCCAC 61.717 66.667 0.00 0.00 40.46 5.01
6041 6223 3.484547 CGTAGCACCGAAACCCGC 61.485 66.667 0.00 0.00 36.84 6.13
6042 6224 3.122971 GTAGCACCGAAACCCGCC 61.123 66.667 0.00 0.00 36.84 6.13
6043 6225 4.397832 TAGCACCGAAACCCGCCC 62.398 66.667 0.00 0.00 36.84 6.13
6067 6249 4.785453 GCGGCCCTGTCCTTCCTG 62.785 72.222 0.00 0.00 0.00 3.86
6068 6250 3.322466 CGGCCCTGTCCTTCCTGT 61.322 66.667 0.00 0.00 0.00 4.00
6069 6251 2.352805 GGCCCTGTCCTTCCTGTG 59.647 66.667 0.00 0.00 0.00 3.66
6070 6252 2.352805 GCCCTGTCCTTCCTGTGG 59.647 66.667 0.00 0.00 0.00 4.17
6071 6253 2.529744 GCCCTGTCCTTCCTGTGGT 61.530 63.158 0.00 0.00 0.00 4.16
6072 6254 1.376466 CCCTGTCCTTCCTGTGGTG 59.624 63.158 0.00 0.00 0.00 4.17
6073 6255 1.127567 CCCTGTCCTTCCTGTGGTGA 61.128 60.000 0.00 0.00 0.00 4.02
6074 6256 0.322975 CCTGTCCTTCCTGTGGTGAG 59.677 60.000 0.00 0.00 0.00 3.51
6075 6257 1.342074 CTGTCCTTCCTGTGGTGAGA 58.658 55.000 0.00 0.00 0.00 3.27
6076 6258 1.274728 CTGTCCTTCCTGTGGTGAGAG 59.725 57.143 0.00 0.00 0.00 3.20
6077 6259 0.036858 GTCCTTCCTGTGGTGAGAGC 60.037 60.000 0.00 0.00 0.00 4.09
6078 6260 0.471780 TCCTTCCTGTGGTGAGAGCA 60.472 55.000 0.00 0.00 0.00 4.26
6079 6261 0.617413 CCTTCCTGTGGTGAGAGCAT 59.383 55.000 0.00 0.00 0.00 3.79
6080 6262 1.406614 CCTTCCTGTGGTGAGAGCATC 60.407 57.143 0.00 0.00 0.00 3.91
6091 6273 2.894387 GAGCATCTCCAGCCGTGC 60.894 66.667 0.00 0.00 37.84 5.34
6092 6274 4.479993 AGCATCTCCAGCCGTGCC 62.480 66.667 0.00 0.00 38.31 5.01
6094 6276 4.864334 CATCTCCAGCCGTGCCCC 62.864 72.222 0.00 0.00 0.00 5.80
6108 6290 3.268032 CCCCCAACAGGCCCTTCT 61.268 66.667 0.00 0.00 0.00 2.85
6109 6291 2.356667 CCCCAACAGGCCCTTCTC 59.643 66.667 0.00 0.00 0.00 2.87
6110 6292 2.538141 CCCCAACAGGCCCTTCTCA 61.538 63.158 0.00 0.00 0.00 3.27
6111 6293 1.001641 CCCAACAGGCCCTTCTCAG 60.002 63.158 0.00 0.00 0.00 3.35
6112 6294 1.492133 CCCAACAGGCCCTTCTCAGA 61.492 60.000 0.00 0.00 0.00 3.27
6113 6295 0.322008 CCAACAGGCCCTTCTCAGAC 60.322 60.000 0.00 0.00 0.00 3.51
6114 6296 0.671781 CAACAGGCCCTTCTCAGACG 60.672 60.000 0.00 0.00 0.00 4.18
6115 6297 1.122019 AACAGGCCCTTCTCAGACGT 61.122 55.000 0.00 0.00 0.00 4.34
6116 6298 1.122019 ACAGGCCCTTCTCAGACGTT 61.122 55.000 0.00 0.00 0.00 3.99
6117 6299 0.035458 CAGGCCCTTCTCAGACGTTT 59.965 55.000 0.00 0.00 0.00 3.60
6118 6300 0.765510 AGGCCCTTCTCAGACGTTTT 59.234 50.000 0.00 0.00 0.00 2.43
6119 6301 1.143073 AGGCCCTTCTCAGACGTTTTT 59.857 47.619 0.00 0.00 0.00 1.94
6142 6324 2.823666 CGTCGGCGCTTAAAAATCG 58.176 52.632 7.64 0.00 0.00 3.34
6143 6325 0.585519 CGTCGGCGCTTAAAAATCGG 60.586 55.000 7.64 0.00 0.00 4.18
6144 6326 0.860203 GTCGGCGCTTAAAAATCGGC 60.860 55.000 7.64 0.00 43.86 5.54
6145 6327 1.585261 CGGCGCTTAAAAATCGGCC 60.585 57.895 7.64 0.00 44.34 6.13
6146 6328 1.226859 GGCGCTTAAAAATCGGCCC 60.227 57.895 7.64 0.00 41.93 5.80
6147 6329 1.585261 GCGCTTAAAAATCGGCCCG 60.585 57.895 0.00 0.00 0.00 6.13
6148 6330 1.063488 CGCTTAAAAATCGGCCCGG 59.937 57.895 1.90 0.00 0.00 5.73
6149 6331 1.650314 CGCTTAAAAATCGGCCCGGT 61.650 55.000 1.90 0.00 0.00 5.28
6150 6332 0.099968 GCTTAAAAATCGGCCCGGTC 59.900 55.000 1.90 0.00 0.00 4.79
6151 6333 0.375803 CTTAAAAATCGGCCCGGTCG 59.624 55.000 4.63 4.63 0.00 4.79
6152 6334 1.646624 TTAAAAATCGGCCCGGTCGC 61.647 55.000 6.54 0.00 0.00 5.19
6170 6352 3.408853 GCCCCTAGGAGCCCGTTT 61.409 66.667 11.48 0.00 33.47 3.60
6171 6353 2.980177 GCCCCTAGGAGCCCGTTTT 61.980 63.158 11.48 0.00 33.47 2.43
6172 6354 1.689412 CCCCTAGGAGCCCGTTTTT 59.311 57.895 11.48 0.00 33.47 1.94
6173 6355 0.393944 CCCCTAGGAGCCCGTTTTTC 60.394 60.000 11.48 0.00 33.47 2.29
6174 6356 0.743345 CCCTAGGAGCCCGTTTTTCG 60.743 60.000 11.48 0.00 39.52 3.46
6175 6357 1.366854 CCTAGGAGCCCGTTTTTCGC 61.367 60.000 1.05 0.00 38.35 4.70
6176 6358 1.366854 CTAGGAGCCCGTTTTTCGCC 61.367 60.000 0.00 0.00 38.35 5.54
6177 6359 4.097863 GGAGCCCGTTTTTCGCCG 62.098 66.667 0.00 0.00 38.35 6.46
6178 6360 4.097863 GAGCCCGTTTTTCGCCGG 62.098 66.667 0.00 0.00 43.82 6.13
6179 6361 4.941309 AGCCCGTTTTTCGCCGGT 62.941 61.111 1.90 0.00 42.67 5.28
6180 6362 3.968568 GCCCGTTTTTCGCCGGTT 61.969 61.111 1.90 0.00 42.67 4.44
6181 6363 2.723116 CCCGTTTTTCGCCGGTTT 59.277 55.556 1.90 0.00 42.67 3.27
6182 6364 1.659026 CCCGTTTTTCGCCGGTTTG 60.659 57.895 1.90 0.00 42.67 2.93
6183 6365 1.659026 CCGTTTTTCGCCGGTTTGG 60.659 57.895 1.90 0.00 39.38 3.28
6184 6366 1.659026 CGTTTTTCGCCGGTTTGGG 60.659 57.895 1.90 0.00 38.63 4.12
6194 6376 3.047735 GGTTTGGGCCGAAACTGG 58.952 61.111 33.51 0.00 36.30 4.00
6201 6383 3.865830 GCCGAAACTGGCGCTAGC 61.866 66.667 21.83 4.06 46.75 3.42
6202 6384 3.554692 CCGAAACTGGCGCTAGCG 61.555 66.667 32.22 32.22 46.35 4.26
6203 6385 3.554692 CGAAACTGGCGCTAGCGG 61.555 66.667 35.86 22.74 46.35 5.52
6204 6386 2.125673 GAAACTGGCGCTAGCGGA 60.126 61.111 35.86 3.81 46.35 5.54
6205 6387 2.434359 AAACTGGCGCTAGCGGAC 60.434 61.111 35.86 21.29 46.35 4.79
6206 6388 3.952628 AAACTGGCGCTAGCGGACC 62.953 63.158 35.86 28.69 46.35 4.46
6252 6434 3.825611 CCGGGGCGAGGCATTTTG 61.826 66.667 0.00 0.00 0.00 2.44
6253 6435 3.825611 CGGGGCGAGGCATTTTGG 61.826 66.667 0.00 0.00 0.00 3.28
6254 6436 4.147449 GGGGCGAGGCATTTTGGC 62.147 66.667 0.00 0.00 44.10 4.52
6262 6444 1.207339 GGCATTTTGGCGCAAAAGC 59.793 52.632 10.38 11.26 44.72 3.51
6263 6445 1.154617 GCATTTTGGCGCAAAAGCG 60.155 52.632 10.38 6.83 44.72 4.68
6264 6446 1.492436 CATTTTGGCGCAAAAGCGG 59.508 52.632 10.38 0.43 44.72 5.52
6265 6447 0.943359 CATTTTGGCGCAAAAGCGGA 60.943 50.000 10.38 0.00 44.72 5.54
6266 6448 0.037419 ATTTTGGCGCAAAAGCGGAT 60.037 45.000 10.38 0.00 44.72 4.18
6267 6449 0.943359 TTTTGGCGCAAAAGCGGATG 60.943 50.000 10.38 0.00 38.24 3.51
6268 6450 2.762006 TTTGGCGCAAAAGCGGATGG 62.762 55.000 10.83 0.00 38.18 3.51
6269 6451 4.496927 GGCGCAAAAGCGGATGGG 62.497 66.667 10.83 0.00 38.18 4.00
6271 6453 4.496927 CGCAAAAGCGGATGGGCC 62.497 66.667 0.00 0.00 0.00 5.80
6272 6454 4.147449 GCAAAAGCGGATGGGCCC 62.147 66.667 17.59 17.59 0.00 5.80
6280 6462 4.554036 GGATGGGCCCGCTGAGTC 62.554 72.222 19.37 7.87 0.00 3.36
6281 6463 3.785859 GATGGGCCCGCTGAGTCA 61.786 66.667 19.37 0.00 0.00 3.41
6282 6464 3.746949 GATGGGCCCGCTGAGTCAG 62.747 68.421 19.37 16.21 34.12 3.51
6307 6489 4.473520 CCGCTTGGTCGCCCTCAT 62.474 66.667 0.00 0.00 0.00 2.90
6308 6490 2.892425 CGCTTGGTCGCCCTCATC 60.892 66.667 0.00 0.00 0.00 2.92
6309 6491 2.892425 GCTTGGTCGCCCTCATCG 60.892 66.667 0.00 0.00 0.00 3.84
6310 6492 2.892425 CTTGGTCGCCCTCATCGC 60.892 66.667 0.00 0.00 0.00 4.58
6311 6493 4.467084 TTGGTCGCCCTCATCGCC 62.467 66.667 0.00 0.00 0.00 5.54
6313 6495 4.593864 GGTCGCCCTCATCGCCTC 62.594 72.222 0.00 0.00 0.00 4.70
6314 6496 4.933064 GTCGCCCTCATCGCCTCG 62.933 72.222 0.00 0.00 0.00 4.63
6317 6499 4.162690 GCCCTCATCGCCTCGGTT 62.163 66.667 0.00 0.00 0.00 4.44
6318 6500 2.584608 CCCTCATCGCCTCGGTTT 59.415 61.111 0.00 0.00 0.00 3.27
6319 6501 1.521681 CCCTCATCGCCTCGGTTTC 60.522 63.158 0.00 0.00 0.00 2.78
6320 6502 1.521681 CCTCATCGCCTCGGTTTCC 60.522 63.158 0.00 0.00 0.00 3.13
6327 6509 4.382320 CCTCGGTTTCCGCGGGAA 62.382 66.667 27.83 22.66 46.75 3.97
6328 6510 3.675619 CCTCGGTTTCCGCGGGAAT 62.676 63.158 24.44 0.00 46.75 3.01
6330 6512 2.435234 CGGTTTCCGCGGGAATCA 60.435 61.111 28.52 4.56 41.71 2.57
6331 6513 2.036006 CGGTTTCCGCGGGAATCAA 61.036 57.895 28.52 11.31 41.71 2.57
6332 6514 1.373590 CGGTTTCCGCGGGAATCAAT 61.374 55.000 28.52 0.00 41.71 2.57
6333 6515 0.100503 GGTTTCCGCGGGAATCAATG 59.899 55.000 24.96 0.00 41.71 2.82
6334 6516 0.525455 GTTTCCGCGGGAATCAATGC 60.525 55.000 24.44 3.99 41.71 3.56
6339 6521 1.356624 GCGGGAATCAATGCGAAGG 59.643 57.895 0.00 0.00 0.00 3.46
6340 6522 1.356624 CGGGAATCAATGCGAAGGC 59.643 57.895 0.00 0.00 40.52 4.35
6341 6523 1.097547 CGGGAATCAATGCGAAGGCT 61.098 55.000 0.00 0.00 40.82 4.58
6342 6524 0.383231 GGGAATCAATGCGAAGGCTG 59.617 55.000 0.00 0.00 40.82 4.85
6343 6525 0.248784 GGAATCAATGCGAAGGCTGC 60.249 55.000 0.00 0.00 40.82 5.25
6344 6526 0.248784 GAATCAATGCGAAGGCTGCC 60.249 55.000 11.65 11.65 40.82 4.85
6345 6527 1.996786 AATCAATGCGAAGGCTGCCG 61.997 55.000 13.96 2.40 40.82 5.69
6363 6545 4.473520 CGCCGGTCAGCCTCCATT 62.474 66.667 1.90 0.00 0.00 3.16
6364 6546 2.825836 GCCGGTCAGCCTCCATTG 60.826 66.667 1.90 0.00 0.00 2.82
6365 6547 2.989639 CCGGTCAGCCTCCATTGA 59.010 61.111 0.00 0.00 0.00 2.57
6366 6548 1.528824 CCGGTCAGCCTCCATTGAT 59.471 57.895 0.00 0.00 0.00 2.57
6367 6549 0.816825 CCGGTCAGCCTCCATTGATG 60.817 60.000 0.00 0.00 0.00 3.07
6368 6550 1.442526 CGGTCAGCCTCCATTGATGC 61.443 60.000 0.00 0.00 32.84 3.91
6369 6551 1.105759 GGTCAGCCTCCATTGATGCC 61.106 60.000 0.00 0.00 33.08 4.40
6370 6552 0.106819 GTCAGCCTCCATTGATGCCT 60.107 55.000 0.00 0.00 33.08 4.75
6371 6553 0.182061 TCAGCCTCCATTGATGCCTC 59.818 55.000 0.00 0.00 33.08 4.70
6372 6554 0.106868 CAGCCTCCATTGATGCCTCA 60.107 55.000 0.00 0.00 33.08 3.86
6373 6555 0.106819 AGCCTCCATTGATGCCTCAC 60.107 55.000 0.00 0.00 33.08 3.51
6374 6556 1.442526 GCCTCCATTGATGCCTCACG 61.443 60.000 0.00 0.00 0.00 4.35
6375 6557 0.816825 CCTCCATTGATGCCTCACGG 60.817 60.000 0.00 0.00 0.00 4.94
6376 6558 0.816825 CTCCATTGATGCCTCACGGG 60.817 60.000 6.75 4.77 38.36 5.28
6438 6620 3.803082 CCGTCATGCAGCCCGTTG 61.803 66.667 0.00 0.00 0.00 4.10
6439 6621 4.465512 CGTCATGCAGCCCGTTGC 62.466 66.667 0.00 0.00 44.33 4.17
6440 6622 4.120331 GTCATGCAGCCCGTTGCC 62.120 66.667 0.87 0.00 43.43 4.52
6465 6647 2.249844 GCTACGGCTATAAAAGGGCA 57.750 50.000 0.00 0.00 35.22 5.36
6466 6648 2.567985 GCTACGGCTATAAAAGGGCAA 58.432 47.619 0.00 0.00 35.22 4.52
6467 6649 2.289820 GCTACGGCTATAAAAGGGCAAC 59.710 50.000 0.00 0.00 35.22 4.17
6498 6680 3.121030 GACGCCACAGCTCGCATT 61.121 61.111 0.00 0.00 36.60 3.56
6499 6681 2.669569 ACGCCACAGCTCGCATTT 60.670 55.556 0.00 0.00 36.60 2.32
6500 6682 2.099062 CGCCACAGCTCGCATTTC 59.901 61.111 0.00 0.00 36.60 2.17
6501 6683 2.486966 GCCACAGCTCGCATTTCC 59.513 61.111 0.00 0.00 35.50 3.13
6502 6684 3.056313 GCCACAGCTCGCATTTCCC 62.056 63.158 0.00 0.00 35.50 3.97
6503 6685 2.409870 CCACAGCTCGCATTTCCCC 61.410 63.158 0.00 0.00 0.00 4.81
6504 6686 2.044946 ACAGCTCGCATTTCCCCC 60.045 61.111 0.00 0.00 0.00 5.40
6520 6702 4.082523 CCCTCTCCGGCGCAGAAA 62.083 66.667 10.83 0.00 0.00 2.52
6521 6703 2.510238 CCTCTCCGGCGCAGAAAG 60.510 66.667 10.83 6.65 0.00 2.62
6522 6704 3.191539 CTCTCCGGCGCAGAAAGC 61.192 66.667 10.83 0.00 40.87 3.51
6523 6705 3.939837 CTCTCCGGCGCAGAAAGCA 62.940 63.158 10.83 0.00 46.13 3.91
6524 6706 3.049674 CTCCGGCGCAGAAAGCAA 61.050 61.111 10.83 0.00 46.13 3.91
6525 6707 3.314388 CTCCGGCGCAGAAAGCAAC 62.314 63.158 10.83 0.00 46.13 4.17
6526 6708 3.659092 CCGGCGCAGAAAGCAACA 61.659 61.111 10.83 0.00 46.13 3.33
6527 6709 2.427410 CGGCGCAGAAAGCAACAC 60.427 61.111 10.83 0.00 46.13 3.32
6528 6710 2.896801 CGGCGCAGAAAGCAACACT 61.897 57.895 10.83 0.00 46.13 3.55
6529 6711 1.081840 GGCGCAGAAAGCAACACTC 60.082 57.895 10.83 0.00 46.13 3.51
6530 6712 1.510480 GGCGCAGAAAGCAACACTCT 61.510 55.000 10.83 0.00 46.13 3.24
6531 6713 0.110464 GCGCAGAAAGCAACACTCTC 60.110 55.000 0.30 0.00 46.13 3.20
6532 6714 0.514691 CGCAGAAAGCAACACTCTCC 59.485 55.000 0.00 0.00 46.13 3.71
6533 6715 0.877743 GCAGAAAGCAACACTCTCCC 59.122 55.000 0.00 0.00 44.79 4.30
6534 6716 1.528129 CAGAAAGCAACACTCTCCCC 58.472 55.000 0.00 0.00 0.00 4.81
6535 6717 1.072965 CAGAAAGCAACACTCTCCCCT 59.927 52.381 0.00 0.00 0.00 4.79
6536 6718 1.349357 AGAAAGCAACACTCTCCCCTC 59.651 52.381 0.00 0.00 0.00 4.30
6537 6719 1.349357 GAAAGCAACACTCTCCCCTCT 59.651 52.381 0.00 0.00 0.00 3.69
6538 6720 1.439543 AAGCAACACTCTCCCCTCTT 58.560 50.000 0.00 0.00 0.00 2.85
6539 6721 0.980423 AGCAACACTCTCCCCTCTTC 59.020 55.000 0.00 0.00 0.00 2.87
6540 6722 0.035915 GCAACACTCTCCCCTCTTCC 60.036 60.000 0.00 0.00 0.00 3.46
6541 6723 0.615850 CAACACTCTCCCCTCTTCCC 59.384 60.000 0.00 0.00 0.00 3.97
6542 6724 0.905337 AACACTCTCCCCTCTTCCCG 60.905 60.000 0.00 0.00 0.00 5.14
6543 6725 2.364448 ACTCTCCCCTCTTCCCGC 60.364 66.667 0.00 0.00 0.00 6.13
6544 6726 3.157949 CTCTCCCCTCTTCCCGCC 61.158 72.222 0.00 0.00 0.00 6.13
6550 6732 4.194720 CCTCTTCCCGCCGACGAG 62.195 72.222 0.00 0.00 43.93 4.18
6551 6733 3.132139 CTCTTCCCGCCGACGAGA 61.132 66.667 0.00 0.00 43.93 4.04
6552 6734 2.674033 TCTTCCCGCCGACGAGAA 60.674 61.111 0.00 0.00 43.93 2.87
6553 6735 2.209064 CTCTTCCCGCCGACGAGAAA 62.209 60.000 0.00 0.00 43.93 2.52
6554 6736 1.805945 CTTCCCGCCGACGAGAAAG 60.806 63.158 0.00 0.00 43.93 2.62
6555 6737 2.209064 CTTCCCGCCGACGAGAAAGA 62.209 60.000 0.00 0.00 43.93 2.52
6556 6738 1.601419 TTCCCGCCGACGAGAAAGAT 61.601 55.000 0.00 0.00 43.93 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.533625 TTTGGATCTGGGAAAGCGTG 58.466 50.000 0.00 0.00 0.00 5.34
1 2 2.514458 ATTTGGATCTGGGAAAGCGT 57.486 45.000 0.00 0.00 0.00 5.07
2 3 3.874392 AAATTTGGATCTGGGAAAGCG 57.126 42.857 0.00 0.00 0.00 4.68
3 4 5.419542 GGTTAAATTTGGATCTGGGAAAGC 58.580 41.667 0.00 0.00 0.00 3.51
4 5 5.185056 ACGGTTAAATTTGGATCTGGGAAAG 59.815 40.000 0.00 0.00 0.00 2.62
5 6 5.081032 ACGGTTAAATTTGGATCTGGGAAA 58.919 37.500 0.00 0.00 0.00 3.13
6 7 4.668636 ACGGTTAAATTTGGATCTGGGAA 58.331 39.130 0.00 0.00 0.00 3.97
7 8 4.310022 ACGGTTAAATTTGGATCTGGGA 57.690 40.909 0.00 0.00 0.00 4.37
8 9 6.518208 TTTACGGTTAAATTTGGATCTGGG 57.482 37.500 0.00 0.00 0.00 4.45
18 19 9.396938 CTCGTTGGTTAAATTTACGGTTAAATT 57.603 29.630 9.79 0.00 45.82 1.82
19 20 8.782144 TCTCGTTGGTTAAATTTACGGTTAAAT 58.218 29.630 9.79 0.00 39.22 1.40
20 21 8.067189 GTCTCGTTGGTTAAATTTACGGTTAAA 58.933 33.333 9.79 0.00 33.37 1.52
21 22 7.307692 GGTCTCGTTGGTTAAATTTACGGTTAA 60.308 37.037 9.79 0.00 33.37 2.01
22 23 6.147000 GGTCTCGTTGGTTAAATTTACGGTTA 59.853 38.462 9.79 0.00 33.37 2.85
23 24 5.049474 GGTCTCGTTGGTTAAATTTACGGTT 60.049 40.000 9.79 0.00 33.37 4.44
24 25 4.452114 GGTCTCGTTGGTTAAATTTACGGT 59.548 41.667 9.79 0.00 33.37 4.83
25 26 4.434593 CGGTCTCGTTGGTTAAATTTACGG 60.435 45.833 9.79 2.88 33.37 4.02
26 27 4.385447 TCGGTCTCGTTGGTTAAATTTACG 59.615 41.667 0.00 0.61 37.69 3.18
27 28 5.406477 AGTCGGTCTCGTTGGTTAAATTTAC 59.594 40.000 0.00 0.00 37.69 2.01
28 29 5.406175 CAGTCGGTCTCGTTGGTTAAATTTA 59.594 40.000 0.00 0.00 37.69 1.40
29 30 4.212636 CAGTCGGTCTCGTTGGTTAAATTT 59.787 41.667 0.00 0.00 37.69 1.82
30 31 3.744426 CAGTCGGTCTCGTTGGTTAAATT 59.256 43.478 0.00 0.00 37.69 1.82
31 32 3.323243 CAGTCGGTCTCGTTGGTTAAAT 58.677 45.455 0.00 0.00 37.69 1.40
32 33 2.746269 CAGTCGGTCTCGTTGGTTAAA 58.254 47.619 0.00 0.00 37.69 1.52
33 34 1.603678 GCAGTCGGTCTCGTTGGTTAA 60.604 52.381 0.00 0.00 37.69 2.01
34 35 0.038892 GCAGTCGGTCTCGTTGGTTA 60.039 55.000 0.00 0.00 37.69 2.85
35 36 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
36 37 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
37 38 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
49 50 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
50 51 2.490993 AATTTTTGCTCCCGCCGCAG 62.491 55.000 0.00 0.00 38.80 5.18
51 52 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
52 53 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
53 54 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
54 55 4.278419 AGTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
55 56 5.008613 TCAGTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
56 57 6.618287 TCAGTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
57 58 9.468532 GAATTCAGTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
58 59 9.173939 CGAATTCAGTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
59 60 9.722056 ACGAATTCAGTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
97 98 9.468532 GGGAGCAAAAATTATATCACTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
98 99 8.137437 CGGGAGCAAAAATTATATCACTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
99 100 7.285401 ACGGGAGCAAAAATTATATCACTGAAT 59.715 33.333 0.00 0.00 0.00 2.57
100 101 6.601613 ACGGGAGCAAAAATTATATCACTGAA 59.398 34.615 0.00 0.00 0.00 3.02
101 102 6.119536 ACGGGAGCAAAAATTATATCACTGA 58.880 36.000 0.00 0.00 0.00 3.41
102 103 6.377327 ACGGGAGCAAAAATTATATCACTG 57.623 37.500 0.00 0.00 0.00 3.66
103 104 5.236478 CGACGGGAGCAAAAATTATATCACT 59.764 40.000 0.00 0.00 0.00 3.41
104 105 5.007332 ACGACGGGAGCAAAAATTATATCAC 59.993 40.000 0.00 0.00 0.00 3.06
105 106 5.120399 ACGACGGGAGCAAAAATTATATCA 58.880 37.500 0.00 0.00 0.00 2.15
106 107 5.668558 ACGACGGGAGCAAAAATTATATC 57.331 39.130 0.00 0.00 0.00 1.63
107 108 7.359765 CGATTACGACGGGAGCAAAAATTATAT 60.360 37.037 0.00 0.00 42.66 0.86
108 109 6.074195 CGATTACGACGGGAGCAAAAATTATA 60.074 38.462 0.00 0.00 42.66 0.98
109 110 5.277154 CGATTACGACGGGAGCAAAAATTAT 60.277 40.000 0.00 0.00 42.66 1.28
110 111 4.033129 CGATTACGACGGGAGCAAAAATTA 59.967 41.667 0.00 0.00 42.66 1.40
111 112 3.181514 CGATTACGACGGGAGCAAAAATT 60.182 43.478 0.00 0.00 42.66 1.82
112 113 2.350498 CGATTACGACGGGAGCAAAAAT 59.650 45.455 0.00 0.00 42.66 1.82
113 114 1.727880 CGATTACGACGGGAGCAAAAA 59.272 47.619 0.00 0.00 42.66 1.94
114 115 1.352114 CGATTACGACGGGAGCAAAA 58.648 50.000 0.00 0.00 42.66 2.44
115 116 0.458889 CCGATTACGACGGGAGCAAA 60.459 55.000 0.00 0.00 45.65 3.68
116 117 1.140161 CCGATTACGACGGGAGCAA 59.860 57.895 0.00 0.00 45.65 3.91
117 118 2.802792 CCGATTACGACGGGAGCA 59.197 61.111 0.00 0.00 45.65 4.26
132 133 5.973565 ACCGTAAATTTAACTATCGAGACCG 59.026 40.000 0.00 0.00 37.07 4.79
133 134 7.761651 AACCGTAAATTTAACTATCGAGACC 57.238 36.000 0.00 0.00 0.00 3.85
146 147 9.893305 CTGAGATTCAAGTTTAACCGTAAATTT 57.107 29.630 0.00 0.00 31.37 1.82
147 148 8.512138 CCTGAGATTCAAGTTTAACCGTAAATT 58.488 33.333 0.00 0.00 31.94 1.82
148 149 7.881232 TCCTGAGATTCAAGTTTAACCGTAAAT 59.119 33.333 0.00 0.00 31.94 1.40
149 150 7.218614 TCCTGAGATTCAAGTTTAACCGTAAA 58.781 34.615 0.00 0.00 0.00 2.01
150 151 6.761312 TCCTGAGATTCAAGTTTAACCGTAA 58.239 36.000 0.00 0.00 0.00 3.18
151 152 6.349243 TCCTGAGATTCAAGTTTAACCGTA 57.651 37.500 0.00 0.00 0.00 4.02
152 153 5.223449 TCCTGAGATTCAAGTTTAACCGT 57.777 39.130 0.00 0.00 0.00 4.83
153 154 5.390991 GCTTCCTGAGATTCAAGTTTAACCG 60.391 44.000 0.00 0.00 0.00 4.44
154 155 5.390991 CGCTTCCTGAGATTCAAGTTTAACC 60.391 44.000 0.00 0.00 0.00 2.85
155 156 5.622378 CGCTTCCTGAGATTCAAGTTTAAC 58.378 41.667 0.00 0.00 0.00 2.01
156 157 4.154195 GCGCTTCCTGAGATTCAAGTTTAA 59.846 41.667 0.00 0.00 0.00 1.52
157 158 3.684788 GCGCTTCCTGAGATTCAAGTTTA 59.315 43.478 0.00 0.00 0.00 2.01
158 159 2.485814 GCGCTTCCTGAGATTCAAGTTT 59.514 45.455 0.00 0.00 0.00 2.66
159 160 2.079925 GCGCTTCCTGAGATTCAAGTT 58.920 47.619 0.00 0.00 0.00 2.66
160 161 1.731720 GCGCTTCCTGAGATTCAAGT 58.268 50.000 0.00 0.00 0.00 3.16
161 162 0.649475 CGCGCTTCCTGAGATTCAAG 59.351 55.000 5.56 0.00 0.00 3.02
162 163 0.740868 CCGCGCTTCCTGAGATTCAA 60.741 55.000 5.56 0.00 0.00 2.69
163 164 1.153568 CCGCGCTTCCTGAGATTCA 60.154 57.895 5.56 0.00 0.00 2.57
164 165 0.249657 ATCCGCGCTTCCTGAGATTC 60.250 55.000 5.56 0.00 0.00 2.52
165 166 0.531532 CATCCGCGCTTCCTGAGATT 60.532 55.000 5.56 0.00 0.00 2.40
166 167 1.068753 CATCCGCGCTTCCTGAGAT 59.931 57.895 5.56 0.00 0.00 2.75
167 168 2.496341 CATCCGCGCTTCCTGAGA 59.504 61.111 5.56 0.00 0.00 3.27
168 169 3.267860 GCATCCGCGCTTCCTGAG 61.268 66.667 5.56 0.00 0.00 3.35
169 170 4.081185 TGCATCCGCGCTTCCTGA 62.081 61.111 5.56 0.00 42.97 3.86
170 171 3.869272 GTGCATCCGCGCTTCCTG 61.869 66.667 5.56 0.00 45.49 3.86
177 178 2.108514 ACAATCCAGTGCATCCGCG 61.109 57.895 0.00 0.00 42.97 6.46
178 179 1.026182 TCACAATCCAGTGCATCCGC 61.026 55.000 0.00 0.00 39.35 5.54
179 180 1.452110 TTCACAATCCAGTGCATCCG 58.548 50.000 0.00 0.00 39.35 4.18
180 181 3.429822 CCATTTCACAATCCAGTGCATCC 60.430 47.826 0.00 0.00 39.35 3.51
181 182 3.444742 TCCATTTCACAATCCAGTGCATC 59.555 43.478 0.00 0.00 39.35 3.91
182 183 3.433343 TCCATTTCACAATCCAGTGCAT 58.567 40.909 0.00 0.00 39.35 3.96
183 184 2.821378 CTCCATTTCACAATCCAGTGCA 59.179 45.455 0.00 0.00 39.35 4.57
184 185 2.165030 CCTCCATTTCACAATCCAGTGC 59.835 50.000 0.00 0.00 39.35 4.40
185 186 2.756760 CCCTCCATTTCACAATCCAGTG 59.243 50.000 0.00 0.00 40.85 3.66
186 187 2.649312 TCCCTCCATTTCACAATCCAGT 59.351 45.455 0.00 0.00 0.00 4.00
187 188 3.285484 CTCCCTCCATTTCACAATCCAG 58.715 50.000 0.00 0.00 0.00 3.86
188 189 2.649312 ACTCCCTCCATTTCACAATCCA 59.351 45.455 0.00 0.00 0.00 3.41
189 190 3.372440 ACTCCCTCCATTTCACAATCC 57.628 47.619 0.00 0.00 0.00 3.01
190 191 5.684704 TCATACTCCCTCCATTTCACAATC 58.315 41.667 0.00 0.00 0.00 2.67
191 192 5.715439 TCATACTCCCTCCATTTCACAAT 57.285 39.130 0.00 0.00 0.00 2.71
192 193 5.512942 TTCATACTCCCTCCATTTCACAA 57.487 39.130 0.00 0.00 0.00 3.33
193 194 5.512942 TTTCATACTCCCTCCATTTCACA 57.487 39.130 0.00 0.00 0.00 3.58
194 195 7.122650 TCAATTTTCATACTCCCTCCATTTCAC 59.877 37.037 0.00 0.00 0.00 3.18
195 196 7.181361 TCAATTTTCATACTCCCTCCATTTCA 58.819 34.615 0.00 0.00 0.00 2.69
196 197 7.645058 TCAATTTTCATACTCCCTCCATTTC 57.355 36.000 0.00 0.00 0.00 2.17
197 198 7.013655 CGATCAATTTTCATACTCCCTCCATTT 59.986 37.037 0.00 0.00 0.00 2.32
198 199 6.488006 CGATCAATTTTCATACTCCCTCCATT 59.512 38.462 0.00 0.00 0.00 3.16
199 200 6.000219 CGATCAATTTTCATACTCCCTCCAT 59.000 40.000 0.00 0.00 0.00 3.41
200 201 5.104527 ACGATCAATTTTCATACTCCCTCCA 60.105 40.000 0.00 0.00 0.00 3.86
201 202 5.368989 ACGATCAATTTTCATACTCCCTCC 58.631 41.667 0.00 0.00 0.00 4.30
202 203 6.144080 CGTACGATCAATTTTCATACTCCCTC 59.856 42.308 10.44 0.00 0.00 4.30
203 204 5.983720 CGTACGATCAATTTTCATACTCCCT 59.016 40.000 10.44 0.00 0.00 4.20
204 205 5.333111 GCGTACGATCAATTTTCATACTCCC 60.333 44.000 21.65 0.00 0.00 4.30
205 206 5.233476 TGCGTACGATCAATTTTCATACTCC 59.767 40.000 21.65 0.00 0.00 3.85
206 207 6.268797 TGCGTACGATCAATTTTCATACTC 57.731 37.500 21.65 0.00 0.00 2.59
207 208 6.238103 CCTTGCGTACGATCAATTTTCATACT 60.238 38.462 21.65 0.00 0.00 2.12
208 209 5.901884 CCTTGCGTACGATCAATTTTCATAC 59.098 40.000 21.65 0.00 0.00 2.39
209 210 5.503357 GCCTTGCGTACGATCAATTTTCATA 60.503 40.000 21.65 0.00 0.00 2.15
210 211 4.730613 GCCTTGCGTACGATCAATTTTCAT 60.731 41.667 21.65 0.00 0.00 2.57
211 212 3.425625 GCCTTGCGTACGATCAATTTTCA 60.426 43.478 21.65 0.30 0.00 2.69
212 213 3.098636 GCCTTGCGTACGATCAATTTTC 58.901 45.455 21.65 0.00 0.00 2.29
213 214 2.486203 TGCCTTGCGTACGATCAATTTT 59.514 40.909 21.65 0.00 0.00 1.82
214 215 2.080693 TGCCTTGCGTACGATCAATTT 58.919 42.857 21.65 0.00 0.00 1.82
215 216 1.665679 CTGCCTTGCGTACGATCAATT 59.334 47.619 21.65 0.00 0.00 2.32
216 217 1.290203 CTGCCTTGCGTACGATCAAT 58.710 50.000 21.65 0.00 0.00 2.57
217 218 0.037697 ACTGCCTTGCGTACGATCAA 60.038 50.000 21.65 13.51 0.00 2.57
218 219 0.037697 AACTGCCTTGCGTACGATCA 60.038 50.000 21.65 5.33 0.00 2.92
219 220 1.060698 GAAACTGCCTTGCGTACGATC 59.939 52.381 21.65 2.16 0.00 3.69
220 221 1.076332 GAAACTGCCTTGCGTACGAT 58.924 50.000 21.65 0.00 0.00 3.73
221 222 1.279527 CGAAACTGCCTTGCGTACGA 61.280 55.000 21.65 0.80 0.00 3.43
222 223 1.129809 CGAAACTGCCTTGCGTACG 59.870 57.895 11.84 11.84 0.00 3.67
223 224 1.154469 GCGAAACTGCCTTGCGTAC 60.154 57.895 0.00 0.00 0.00 3.67
224 225 0.882927 AAGCGAAACTGCCTTGCGTA 60.883 50.000 0.00 0.00 34.65 4.42
225 226 1.724582 AAAGCGAAACTGCCTTGCGT 61.725 50.000 0.00 0.00 34.65 5.24
226 227 0.594796 AAAAGCGAAACTGCCTTGCG 60.595 50.000 0.00 0.00 34.65 4.85
227 228 2.031157 TCTAAAAGCGAAACTGCCTTGC 60.031 45.455 0.00 0.00 34.65 4.01
228 229 3.896648 TCTAAAAGCGAAACTGCCTTG 57.103 42.857 0.00 0.00 34.65 3.61
229 230 5.122396 CACTATCTAAAAGCGAAACTGCCTT 59.878 40.000 0.00 0.00 34.65 4.35
230 231 4.631813 CACTATCTAAAAGCGAAACTGCCT 59.368 41.667 0.00 0.00 34.65 4.75
231 232 4.728021 GCACTATCTAAAAGCGAAACTGCC 60.728 45.833 0.00 0.00 34.65 4.85
232 233 4.093556 AGCACTATCTAAAAGCGAAACTGC 59.906 41.667 0.00 0.00 0.00 4.40
233 234 5.786401 AGCACTATCTAAAAGCGAAACTG 57.214 39.130 0.00 0.00 0.00 3.16
234 235 5.520649 GCTAGCACTATCTAAAAGCGAAACT 59.479 40.000 10.63 0.00 0.00 2.66
235 236 5.276915 GGCTAGCACTATCTAAAAGCGAAAC 60.277 44.000 18.24 0.00 0.00 2.78
236 237 4.809426 GGCTAGCACTATCTAAAAGCGAAA 59.191 41.667 18.24 0.00 0.00 3.46
237 238 4.142026 TGGCTAGCACTATCTAAAAGCGAA 60.142 41.667 18.24 0.00 0.00 4.70
238 239 3.383505 TGGCTAGCACTATCTAAAAGCGA 59.616 43.478 18.24 0.00 0.00 4.93
239 240 3.717707 TGGCTAGCACTATCTAAAAGCG 58.282 45.455 18.24 0.00 0.00 4.68
264 265 7.711846 TGTTTTATTTGTAGCAACACATGAGT 58.288 30.769 0.00 0.00 34.61 3.41
273 274 7.017498 TGTCTCGTTGTTTTATTTGTAGCAA 57.983 32.000 0.00 0.00 0.00 3.91
301 302 8.401046 TGTTTGTTTTATTGTAGCAAACTGTC 57.599 30.769 16.02 0.00 45.11 3.51
333 334 4.466567 TGTCATGTTGCTCGTAAAGTTG 57.533 40.909 0.00 0.00 0.00 3.16
340 341 2.738846 GAGATGTTGTCATGTTGCTCGT 59.261 45.455 0.00 0.00 34.06 4.18
397 398 2.325082 CGTTTGCCTCCTTGTCCCG 61.325 63.158 0.00 0.00 0.00 5.14
434 435 3.623510 GTCCCTTGCTACTGTAAAGATGC 59.376 47.826 1.71 0.00 0.00 3.91
461 462 9.002600 TGAATATAGTGGCATGATGAATTGTAC 57.997 33.333 0.00 0.00 0.00 2.90
475 476 5.125417 TGCTTCCAAAACTGAATATAGTGGC 59.875 40.000 0.00 0.00 0.00 5.01
482 483 6.707440 TCTGTTTGCTTCCAAAACTGAATA 57.293 33.333 6.26 0.00 42.19 1.75
524 525 1.376424 CTACCTGGCTGTGGCTGTG 60.376 63.158 0.00 0.00 38.73 3.66
525 526 2.596851 CCTACCTGGCTGTGGCTGT 61.597 63.158 0.00 0.00 38.73 4.40
526 527 1.264749 TACCTACCTGGCTGTGGCTG 61.265 60.000 0.00 0.00 40.22 4.85
527 528 0.978146 CTACCTACCTGGCTGTGGCT 60.978 60.000 0.00 0.00 40.22 4.75
528 529 1.522569 CTACCTACCTGGCTGTGGC 59.477 63.158 0.00 0.00 40.22 5.01
529 530 1.338136 CCCTACCTACCTGGCTGTGG 61.338 65.000 0.00 0.00 40.22 4.17
960 967 1.301558 CAGAGGCGGATCCAGATGC 60.302 63.158 13.41 6.69 37.29 3.91
1258 1265 0.322008 GTGCTCCCACCAGAAGAAGG 60.322 60.000 0.00 0.00 35.92 3.46
1268 1275 2.358737 CCTCCAACGTGCTCCCAC 60.359 66.667 0.00 0.00 38.62 4.61
1323 1330 0.443869 CAACGACCTTGATCTTGGCG 59.556 55.000 14.27 14.27 30.42 5.69
1419 1426 2.100631 CGCCTGGACATCGGTGTTC 61.101 63.158 1.13 0.00 39.09 3.18
1539 1546 1.123861 ACTCACAGCTCTCCTTGGCA 61.124 55.000 0.00 0.00 0.00 4.92
1675 1685 3.426159 GCAATATGGACACCGAAACAGTG 60.426 47.826 0.00 0.00 41.15 3.66
1702 1712 1.151361 AGTTCCCCCACCCATTCCT 60.151 57.895 0.00 0.00 0.00 3.36
2088 2098 7.554118 CCTGCAAGAGGAAGAAGACATTAAATA 59.446 37.037 0.00 0.00 46.33 1.40
2099 2109 2.057922 AGGAACCTGCAAGAGGAAGAA 58.942 47.619 0.00 0.00 46.33 2.52
2123 2133 6.869913 ACATCAGCAAAATCAACATTAACCAG 59.130 34.615 0.00 0.00 0.00 4.00
2239 2249 9.463443 GGAGCAAATCATATAAATACCAACAAC 57.537 33.333 0.00 0.00 0.00 3.32
2240 2250 9.194972 TGGAGCAAATCATATAAATACCAACAA 57.805 29.630 0.00 0.00 0.00 2.83
2246 2256 9.831737 GATGTGTGGAGCAAATCATATAAATAC 57.168 33.333 0.00 0.00 40.70 1.89
2258 2268 1.725641 CGCTAGATGTGTGGAGCAAA 58.274 50.000 0.00 0.00 34.49 3.68
2264 2274 0.940126 GAATGGCGCTAGATGTGTGG 59.060 55.000 7.64 0.00 0.00 4.17
2277 2287 4.563061 AGAATTCAACTGCAAAGAATGGC 58.437 39.130 8.44 5.21 32.69 4.40
2341 2359 9.846248 CTATTTAACATTGTTTGCTTCTAGCTT 57.154 29.630 7.45 0.00 42.97 3.74
2415 2433 7.751047 AAAGGAGCTCTTTTTAAAACGAAAC 57.249 32.000 17.40 4.40 42.62 2.78
2421 2439 7.200455 GCACTGTAAAGGAGCTCTTTTTAAAA 58.800 34.615 26.42 8.14 42.62 1.52
2424 2442 4.451096 CGCACTGTAAAGGAGCTCTTTTTA 59.549 41.667 26.42 20.13 42.62 1.52
2436 2454 2.723124 AATTTGGGCGCACTGTAAAG 57.277 45.000 12.74 0.00 0.00 1.85
2447 2465 9.846248 CAATAGACAGCTAATAATAATTTGGGC 57.154 33.333 0.00 0.00 0.00 5.36
2465 2483 6.021030 ACCCTTAGGTCTAACACAATAGACA 58.979 40.000 14.40 0.00 46.45 3.41
2481 2499 2.413837 CAGTGAACAACGACCCTTAGG 58.586 52.381 0.00 0.00 40.04 2.69
2531 2556 6.326583 CCAGGTACTCCTAGATATTTTGTGGA 59.673 42.308 0.00 0.00 43.07 4.02
2580 2606 9.973450 GCTTATAGATGACAGTTAATTCTCTCA 57.027 33.333 0.00 0.00 0.00 3.27
2599 2625 7.040132 TGTGTGACCATAGATCTGAGCTTATAG 60.040 40.741 5.18 0.00 0.00 1.31
2649 2675 0.896940 CCAAACCTGCCATGCTCACT 60.897 55.000 0.00 0.00 0.00 3.41
2678 2704 4.745620 GGAGTAGCATTCTATTCACGGTTC 59.254 45.833 0.00 0.00 34.35 3.62
2782 2809 5.407995 GCAGATCTCATCTTTTAATCTCCGG 59.592 44.000 0.00 0.00 37.58 5.14
2784 2811 8.367156 AGTAGCAGATCTCATCTTTTAATCTCC 58.633 37.037 0.00 0.00 37.58 3.71
2838 2865 8.128582 TGATGTCAATTATTGTTTAATCTCGCC 58.871 33.333 4.77 0.00 0.00 5.54
2911 2938 1.453155 CATCCTTAGCAGGCGTGTTT 58.547 50.000 8.40 0.00 40.58 2.83
2915 2942 1.051812 ATAGCATCCTTAGCAGGCGT 58.948 50.000 0.00 0.00 40.58 5.68
2946 2973 3.314357 CACCATCTCCATAACTGCACATG 59.686 47.826 0.00 0.00 0.00 3.21
3027 3054 4.408821 GCGGTGGTGATGGGAGCA 62.409 66.667 0.00 0.00 0.00 4.26
3126 3270 3.199946 CCAGTGAAACCTAGCCCTTGATA 59.800 47.826 0.00 0.00 37.80 2.15
3139 3283 3.003378 GTGTTAAGGAGCACCAGTGAAAC 59.997 47.826 2.07 0.19 38.94 2.78
3150 3294 0.322546 CCACCTGGGTGTTAAGGAGC 60.323 60.000 17.18 0.00 44.02 4.70
3378 3524 5.896922 TGGCATGTAAATTTGTTTCGTTG 57.103 34.783 0.00 0.00 0.00 4.10
3503 3652 6.773976 ACCAAGAAAACTGAACTCAATTCA 57.226 33.333 0.00 0.00 45.39 2.57
3541 3690 0.524816 GCATCTGCATGGAAACTGCG 60.525 55.000 0.00 0.00 42.62 5.18
3651 3802 1.024271 GAATGGCATTAAGAGCGGCA 58.976 50.000 13.65 0.00 39.74 5.69
3899 4050 8.779354 ATCCTAGTAGCAACTTTTCTGTTTAG 57.221 34.615 0.00 0.00 37.15 1.85
3957 4108 6.772233 TCATACCCACTTGGATTGATATTGTG 59.228 38.462 0.00 0.00 37.39 3.33
4045 4197 0.322997 TAAAATGTGGCCCCAGTCGG 60.323 55.000 0.00 0.00 0.00 4.79
4221 4373 4.261867 CCAAAACTAGGCCAACCAAAGTAC 60.262 45.833 5.01 0.00 39.06 2.73
4543 4702 7.362487 CCAATGTGTACATGTTGGTAAATGCTA 60.362 37.037 23.72 0.00 36.56 3.49
4547 4706 6.909550 ACCAATGTGTACATGTTGGTAAAT 57.090 33.333 30.72 16.30 42.54 1.40
4606 4765 2.819608 TGCAGGAACAAGTTGCCTAATC 59.180 45.455 1.81 0.00 37.03 1.75
4648 4807 4.931601 TCTGCCTCGAATGTTGCATATATC 59.068 41.667 0.00 0.00 32.53 1.63
4662 4821 1.618343 TGAGTGTTGAATCTGCCTCGA 59.382 47.619 0.00 0.00 0.00 4.04
4746 4913 6.209391 GCTATATTGGTGCCAGGAACATAATT 59.791 38.462 0.00 0.00 0.00 1.40
4996 5164 1.826385 AAGAAAATCAGGCCTCCGTG 58.174 50.000 0.00 0.00 0.00 4.94
5128 5296 7.554211 TGGAAACATGCTAAAATGAATATGCA 58.446 30.769 0.00 0.00 33.40 3.96
5203 5371 3.630312 TGCCCAACTTGTGAGAAACTTAC 59.370 43.478 0.00 0.00 0.00 2.34
5721 5890 3.129113 CAGCTACACATTATTGGCAGCAA 59.871 43.478 0.00 0.00 31.30 3.91
5723 5892 2.684881 ACAGCTACACATTATTGGCAGC 59.315 45.455 0.00 0.00 0.00 5.25
5749 5918 7.746475 GCAGAACATTTTCTACAACACTGATAC 59.254 37.037 0.00 0.00 40.34 2.24
5819 6000 3.386402 GGATGTGGGGTGTTTCTCAAAAA 59.614 43.478 0.00 0.00 0.00 1.94
5820 6001 2.962421 GGATGTGGGGTGTTTCTCAAAA 59.038 45.455 0.00 0.00 0.00 2.44
5821 6002 2.593026 GGATGTGGGGTGTTTCTCAAA 58.407 47.619 0.00 0.00 0.00 2.69
5822 6003 1.203001 GGGATGTGGGGTGTTTCTCAA 60.203 52.381 0.00 0.00 0.00 3.02
5823 6004 0.404040 GGGATGTGGGGTGTTTCTCA 59.596 55.000 0.00 0.00 0.00 3.27
5824 6005 0.698818 AGGGATGTGGGGTGTTTCTC 59.301 55.000 0.00 0.00 0.00 2.87
5825 6006 1.633945 GTAGGGATGTGGGGTGTTTCT 59.366 52.381 0.00 0.00 0.00 2.52
5826 6007 1.633945 AGTAGGGATGTGGGGTGTTTC 59.366 52.381 0.00 0.00 0.00 2.78
5827 6008 1.755200 AGTAGGGATGTGGGGTGTTT 58.245 50.000 0.00 0.00 0.00 2.83
5828 6009 1.755200 AAGTAGGGATGTGGGGTGTT 58.245 50.000 0.00 0.00 0.00 3.32
5829 6010 2.653543 TAAGTAGGGATGTGGGGTGT 57.346 50.000 0.00 0.00 0.00 4.16
5830 6011 5.548056 AGATAATAAGTAGGGATGTGGGGTG 59.452 44.000 0.00 0.00 0.00 4.61
5831 6012 5.738401 AGATAATAAGTAGGGATGTGGGGT 58.262 41.667 0.00 0.00 0.00 4.95
5832 6013 5.189934 GGAGATAATAAGTAGGGATGTGGGG 59.810 48.000 0.00 0.00 0.00 4.96
5833 6014 5.189934 GGGAGATAATAAGTAGGGATGTGGG 59.810 48.000 0.00 0.00 0.00 4.61
5834 6015 6.026186 AGGGAGATAATAAGTAGGGATGTGG 58.974 44.000 0.00 0.00 0.00 4.17
5835 6016 6.498651 ACAGGGAGATAATAAGTAGGGATGTG 59.501 42.308 0.00 0.00 0.00 3.21
5836 6017 6.635021 ACAGGGAGATAATAAGTAGGGATGT 58.365 40.000 0.00 0.00 0.00 3.06
5837 6018 6.155393 GGACAGGGAGATAATAAGTAGGGATG 59.845 46.154 0.00 0.00 0.00 3.51
5838 6019 6.265304 GGACAGGGAGATAATAAGTAGGGAT 58.735 44.000 0.00 0.00 0.00 3.85
5839 6020 5.460720 GGGACAGGGAGATAATAAGTAGGGA 60.461 48.000 0.00 0.00 0.00 4.20
5840 6021 4.778427 GGGACAGGGAGATAATAAGTAGGG 59.222 50.000 0.00 0.00 0.00 3.53
5841 6022 4.778427 GGGGACAGGGAGATAATAAGTAGG 59.222 50.000 0.00 0.00 0.00 3.18
5842 6023 5.656420 AGGGGACAGGGAGATAATAAGTAG 58.344 45.833 0.00 0.00 0.00 2.57
5843 6024 5.698369 AGGGGACAGGGAGATAATAAGTA 57.302 43.478 0.00 0.00 0.00 2.24
5844 6025 4.578149 AGGGGACAGGGAGATAATAAGT 57.422 45.455 0.00 0.00 0.00 2.24
5845 6026 4.907875 TGAAGGGGACAGGGAGATAATAAG 59.092 45.833 0.00 0.00 0.00 1.73
5846 6027 4.903149 TGAAGGGGACAGGGAGATAATAA 58.097 43.478 0.00 0.00 0.00 1.40
5847 6028 4.569676 TGAAGGGGACAGGGAGATAATA 57.430 45.455 0.00 0.00 0.00 0.98
5848 6029 3.438131 TGAAGGGGACAGGGAGATAAT 57.562 47.619 0.00 0.00 0.00 1.28
5857 6038 3.560636 AATAACCGATGAAGGGGACAG 57.439 47.619 0.00 0.00 35.02 3.51
5864 6045 5.233957 TGCATCACAAATAACCGATGAAG 57.766 39.130 0.00 0.00 37.97 3.02
5878 6059 0.403655 TTAGTTGGGCCTGCATCACA 59.596 50.000 4.53 0.00 0.00 3.58
5919 6100 1.960689 ACGACCATCAAAACTTTGGGG 59.039 47.619 2.49 7.16 38.66 4.96
5927 6108 2.570415 TGCCCTAACGACCATCAAAA 57.430 45.000 0.00 0.00 0.00 2.44
5936 6117 0.952280 CGCTAGAGATGCCCTAACGA 59.048 55.000 0.00 0.00 29.96 3.85
5937 6118 0.039074 CCGCTAGAGATGCCCTAACG 60.039 60.000 0.00 0.00 0.00 3.18
5955 6136 5.416013 CCTCCAATTTGAGTTTTAGAGACCC 59.584 44.000 5.86 0.00 0.00 4.46
5956 6137 6.238648 TCCTCCAATTTGAGTTTTAGAGACC 58.761 40.000 5.86 0.00 0.00 3.85
5957 6138 6.128145 GCTCCTCCAATTTGAGTTTTAGAGAC 60.128 42.308 11.49 3.19 0.00 3.36
5959 6140 5.707298 TGCTCCTCCAATTTGAGTTTTAGAG 59.293 40.000 5.86 5.81 0.00 2.43
6003 6185 3.716195 TGGCGGACCAGGTGGATG 61.716 66.667 0.00 0.00 42.67 3.51
6018 6200 4.728102 TTCGGTGCTACGCGGTGG 62.728 66.667 12.47 0.25 0.00 4.61
6019 6201 2.735478 TTTCGGTGCTACGCGGTG 60.735 61.111 12.47 3.22 0.00 4.94
6020 6202 2.735857 GTTTCGGTGCTACGCGGT 60.736 61.111 12.47 0.00 0.00 5.68
6021 6203 3.484547 GGTTTCGGTGCTACGCGG 61.485 66.667 12.47 0.00 0.00 6.46
6022 6204 3.484547 GGGTTTCGGTGCTACGCG 61.485 66.667 3.53 3.53 0.00 6.01
6023 6205 3.484547 CGGGTTTCGGTGCTACGC 61.485 66.667 0.00 0.00 34.75 4.42
6024 6206 3.484547 GCGGGTTTCGGTGCTACG 61.485 66.667 0.00 0.00 39.69 3.51
6025 6207 3.122971 GGCGGGTTTCGGTGCTAC 61.123 66.667 0.00 0.00 39.69 3.58
6026 6208 4.397832 GGGCGGGTTTCGGTGCTA 62.398 66.667 0.00 0.00 39.69 3.49
6050 6232 4.785453 CAGGAAGGACAGGGCCGC 62.785 72.222 0.00 0.00 0.00 6.53
6051 6233 3.322466 ACAGGAAGGACAGGGCCG 61.322 66.667 0.00 0.00 0.00 6.13
6052 6234 2.352805 CACAGGAAGGACAGGGCC 59.647 66.667 0.00 0.00 0.00 5.80
6053 6235 2.352805 CCACAGGAAGGACAGGGC 59.647 66.667 0.00 0.00 0.00 5.19
6054 6236 1.127567 TCACCACAGGAAGGACAGGG 61.128 60.000 0.00 0.00 0.00 4.45
6055 6237 0.322975 CTCACCACAGGAAGGACAGG 59.677 60.000 0.00 0.00 0.00 4.00
6056 6238 1.274728 CTCTCACCACAGGAAGGACAG 59.725 57.143 0.00 0.00 0.00 3.51
6057 6239 1.342074 CTCTCACCACAGGAAGGACA 58.658 55.000 0.00 0.00 0.00 4.02
6058 6240 0.036858 GCTCTCACCACAGGAAGGAC 60.037 60.000 0.00 0.00 0.00 3.85
6059 6241 0.471780 TGCTCTCACCACAGGAAGGA 60.472 55.000 0.00 0.00 0.00 3.36
6060 6242 0.617413 ATGCTCTCACCACAGGAAGG 59.383 55.000 0.00 0.00 0.00 3.46
6061 6243 1.554160 AGATGCTCTCACCACAGGAAG 59.446 52.381 0.00 0.00 0.00 3.46
6062 6244 1.552337 GAGATGCTCTCACCACAGGAA 59.448 52.381 7.93 0.00 42.90 3.36
6063 6245 1.189752 GAGATGCTCTCACCACAGGA 58.810 55.000 7.93 0.00 42.90 3.86
6064 6246 0.177604 GGAGATGCTCTCACCACAGG 59.822 60.000 13.06 0.00 45.12 4.00
6065 6247 0.900421 TGGAGATGCTCTCACCACAG 59.100 55.000 13.06 0.00 45.12 3.66
6066 6248 0.900421 CTGGAGATGCTCTCACCACA 59.100 55.000 13.06 3.81 45.12 4.17
6067 6249 0.461693 GCTGGAGATGCTCTCACCAC 60.462 60.000 13.06 4.05 45.12 4.16
6068 6250 1.620739 GGCTGGAGATGCTCTCACCA 61.621 60.000 13.06 9.62 45.12 4.17
6069 6251 1.145819 GGCTGGAGATGCTCTCACC 59.854 63.158 13.06 6.09 45.12 4.02
6070 6252 1.227205 CGGCTGGAGATGCTCTCAC 60.227 63.158 13.06 5.59 45.12 3.51
6071 6253 1.683707 ACGGCTGGAGATGCTCTCA 60.684 57.895 13.06 0.00 45.12 3.27
6072 6254 1.227205 CACGGCTGGAGATGCTCTC 60.227 63.158 0.00 5.01 42.66 3.20
6073 6255 2.898738 CACGGCTGGAGATGCTCT 59.101 61.111 0.00 0.00 0.00 4.09
6074 6256 2.894387 GCACGGCTGGAGATGCTC 60.894 66.667 0.00 0.00 35.16 4.26
6075 6257 4.479993 GGCACGGCTGGAGATGCT 62.480 66.667 5.90 0.00 38.18 3.79
6077 6259 4.864334 GGGGCACGGCTGGAGATG 62.864 72.222 0.00 0.00 0.00 2.90
6091 6273 3.268032 AGAAGGGCCTGTTGGGGG 61.268 66.667 6.92 0.00 35.12 5.40
6092 6274 2.356667 GAGAAGGGCCTGTTGGGG 59.643 66.667 6.92 0.00 35.12 4.96
6093 6275 1.001641 CTGAGAAGGGCCTGTTGGG 60.002 63.158 6.92 0.00 38.36 4.12
6094 6276 0.322008 GTCTGAGAAGGGCCTGTTGG 60.322 60.000 6.92 0.00 0.00 3.77
6095 6277 0.671781 CGTCTGAGAAGGGCCTGTTG 60.672 60.000 6.92 0.00 0.00 3.33
6096 6278 1.122019 ACGTCTGAGAAGGGCCTGTT 61.122 55.000 6.92 0.00 0.00 3.16
6097 6279 1.122019 AACGTCTGAGAAGGGCCTGT 61.122 55.000 6.92 0.00 0.00 4.00
6098 6280 0.035458 AAACGTCTGAGAAGGGCCTG 59.965 55.000 6.92 0.00 0.00 4.85
6099 6281 0.765510 AAAACGTCTGAGAAGGGCCT 59.234 50.000 0.00 0.00 0.00 5.19
6100 6282 1.605753 AAAAACGTCTGAGAAGGGCC 58.394 50.000 0.00 0.00 0.00 5.80
6124 6306 0.585519 CCGATTTTTAAGCGCCGACG 60.586 55.000 2.29 0.00 39.30 5.12
6125 6307 0.860203 GCCGATTTTTAAGCGCCGAC 60.860 55.000 2.29 0.00 39.30 4.79
6126 6308 1.426223 GCCGATTTTTAAGCGCCGA 59.574 52.632 2.29 0.00 39.30 5.54
6127 6309 1.585261 GGCCGATTTTTAAGCGCCG 60.585 57.895 2.29 0.00 39.30 6.46
6128 6310 1.226859 GGGCCGATTTTTAAGCGCC 60.227 57.895 2.29 0.00 39.30 6.53
6129 6311 1.585261 CGGGCCGATTTTTAAGCGC 60.585 57.895 24.41 0.00 39.30 5.92
6130 6312 1.063488 CCGGGCCGATTTTTAAGCG 59.937 57.895 30.79 1.58 40.52 4.68
6131 6313 0.099968 GACCGGGCCGATTTTTAAGC 59.900 55.000 30.79 0.00 0.00 3.09
6132 6314 0.375803 CGACCGGGCCGATTTTTAAG 59.624 55.000 30.79 10.56 0.00 1.85
6133 6315 1.646624 GCGACCGGGCCGATTTTTAA 61.647 55.000 30.79 0.00 0.00 1.52
6134 6316 2.107903 GCGACCGGGCCGATTTTTA 61.108 57.895 30.79 0.00 0.00 1.52
6135 6317 3.436924 GCGACCGGGCCGATTTTT 61.437 61.111 30.79 5.49 0.00 1.94
6153 6335 2.494777 AAAAACGGGCTCCTAGGGGC 62.495 60.000 26.73 26.73 0.00 5.80
6154 6336 0.393944 GAAAAACGGGCTCCTAGGGG 60.394 60.000 9.46 6.61 0.00 4.79
6155 6337 0.743345 CGAAAAACGGGCTCCTAGGG 60.743 60.000 9.46 0.44 38.46 3.53
6156 6338 1.366854 GCGAAAAACGGGCTCCTAGG 61.367 60.000 0.82 0.82 42.83 3.02
6157 6339 1.366854 GGCGAAAAACGGGCTCCTAG 61.367 60.000 0.00 0.00 42.83 3.02
6158 6340 1.376295 GGCGAAAAACGGGCTCCTA 60.376 57.895 0.00 0.00 42.83 2.94
6159 6341 2.671963 GGCGAAAAACGGGCTCCT 60.672 61.111 0.00 0.00 42.83 3.69
6160 6342 4.097863 CGGCGAAAAACGGGCTCC 62.098 66.667 0.00 0.00 42.83 4.70
6161 6343 4.097863 CCGGCGAAAAACGGGCTC 62.098 66.667 9.30 0.00 46.08 4.70
6166 6348 1.659026 CCCAAACCGGCGAAAAACG 60.659 57.895 9.30 0.00 45.66 3.60
6167 6349 1.952133 GCCCAAACCGGCGAAAAAC 60.952 57.895 9.30 0.00 39.64 2.43
6168 6350 2.417936 GCCCAAACCGGCGAAAAA 59.582 55.556 9.30 0.00 39.64 1.94
6177 6359 3.047735 CCAGTTTCGGCCCAAACC 58.952 61.111 20.72 5.05 37.01 3.27
6185 6367 3.554692 CGCTAGCGCCAGTTTCGG 61.555 66.667 26.07 0.00 0.00 4.30
6186 6368 3.554692 CCGCTAGCGCCAGTTTCG 61.555 66.667 31.35 11.42 38.24 3.46
6187 6369 2.125673 TCCGCTAGCGCCAGTTTC 60.126 61.111 31.35 0.00 38.24 2.78
6188 6370 2.434359 GTCCGCTAGCGCCAGTTT 60.434 61.111 31.35 0.00 38.24 2.66
6189 6371 4.452733 GGTCCGCTAGCGCCAGTT 62.453 66.667 31.35 0.00 38.24 3.16
6235 6417 3.825611 CAAAATGCCTCGCCCCGG 61.826 66.667 0.00 0.00 0.00 5.73
6236 6418 3.825611 CCAAAATGCCTCGCCCCG 61.826 66.667 0.00 0.00 0.00 5.73
6237 6419 4.147449 GCCAAAATGCCTCGCCCC 62.147 66.667 0.00 0.00 0.00 5.80
6238 6420 4.496927 CGCCAAAATGCCTCGCCC 62.497 66.667 0.00 0.00 0.00 6.13
6240 6422 3.912820 TTGCGCCAAAATGCCTCGC 62.913 57.895 4.18 0.00 45.23 5.03
6241 6423 0.943359 TTTTGCGCCAAAATGCCTCG 60.943 50.000 4.18 0.00 38.24 4.63
6242 6424 0.792031 CTTTTGCGCCAAAATGCCTC 59.208 50.000 4.18 0.00 41.53 4.70
6243 6425 1.229975 GCTTTTGCGCCAAAATGCCT 61.230 50.000 15.86 0.00 41.53 4.75
6244 6426 1.207339 GCTTTTGCGCCAAAATGCC 59.793 52.632 15.86 7.04 41.53 4.40
6245 6427 4.824550 GCTTTTGCGCCAAAATGC 57.175 50.000 4.18 10.04 41.53 3.56
6255 6437 4.147449 GGGCCCATCCGCTTTTGC 62.147 66.667 19.95 0.00 43.23 3.68
6256 6438 3.825611 CGGGCCCATCCGCTTTTG 61.826 66.667 24.92 0.00 43.71 2.44
6263 6445 4.554036 GACTCAGCGGGCCCATCC 62.554 72.222 24.92 9.50 0.00 3.51
6264 6446 3.746949 CTGACTCAGCGGGCCCATC 62.747 68.421 24.92 13.24 0.00 3.51
6265 6447 3.790437 CTGACTCAGCGGGCCCAT 61.790 66.667 24.92 6.64 0.00 4.00
6297 6479 4.933064 CGAGGCGATGAGGGCGAC 62.933 72.222 0.00 0.00 37.59 5.19
6300 6482 3.682292 AAACCGAGGCGATGAGGGC 62.682 63.158 0.00 0.00 0.00 5.19
6301 6483 1.521681 GAAACCGAGGCGATGAGGG 60.522 63.158 0.00 0.00 0.00 4.30
6302 6484 1.521681 GGAAACCGAGGCGATGAGG 60.522 63.158 0.00 0.00 0.00 3.86
6303 6485 4.110493 GGAAACCGAGGCGATGAG 57.890 61.111 0.00 0.00 0.00 2.90
6314 6496 0.100503 CATTGATTCCCGCGGAAACC 59.899 55.000 30.73 2.82 45.41 3.27
6315 6497 0.525455 GCATTGATTCCCGCGGAAAC 60.525 55.000 30.73 17.51 45.41 2.78
6316 6498 1.806568 GCATTGATTCCCGCGGAAA 59.193 52.632 30.73 15.47 45.41 3.13
6317 6499 2.468670 CGCATTGATTCCCGCGGAA 61.469 57.895 30.73 19.41 46.39 4.30
6318 6500 2.894879 CGCATTGATTCCCGCGGA 60.895 61.111 30.73 8.21 43.84 5.54
6321 6503 1.356624 CCTTCGCATTGATTCCCGC 59.643 57.895 0.00 0.00 0.00 6.13
6322 6504 1.097547 AGCCTTCGCATTGATTCCCG 61.098 55.000 0.00 0.00 37.52 5.14
6323 6505 0.383231 CAGCCTTCGCATTGATTCCC 59.617 55.000 0.00 0.00 37.52 3.97
6324 6506 0.248784 GCAGCCTTCGCATTGATTCC 60.249 55.000 0.00 0.00 37.52 3.01
6325 6507 0.248784 GGCAGCCTTCGCATTGATTC 60.249 55.000 3.29 0.00 37.52 2.52
6326 6508 1.811860 GGCAGCCTTCGCATTGATT 59.188 52.632 3.29 0.00 37.52 2.57
6327 6509 2.475466 CGGCAGCCTTCGCATTGAT 61.475 57.895 10.54 0.00 37.52 2.57
6328 6510 3.126879 CGGCAGCCTTCGCATTGA 61.127 61.111 10.54 0.00 37.52 2.57
6346 6528 4.473520 AATGGAGGCTGACCGGCG 62.474 66.667 0.00 0.00 44.22 6.46
6347 6529 2.615227 ATCAATGGAGGCTGACCGGC 62.615 60.000 0.00 0.00 42.76 6.13
6348 6530 0.816825 CATCAATGGAGGCTGACCGG 60.817 60.000 0.00 0.00 42.76 5.28
6349 6531 1.442526 GCATCAATGGAGGCTGACCG 61.443 60.000 0.00 0.00 46.80 4.79
6350 6532 2.412605 GCATCAATGGAGGCTGACC 58.587 57.895 0.00 0.00 46.80 4.02
6356 6538 2.699073 CGTGAGGCATCAATGGAGG 58.301 57.895 0.92 0.00 37.14 4.30
6421 6603 3.803082 CAACGGGCTGCATGACGG 61.803 66.667 0.50 0.00 0.00 4.79
6422 6604 4.465512 GCAACGGGCTGCATGACG 62.466 66.667 0.50 2.82 42.17 4.35
6423 6605 4.120331 GGCAACGGGCTGCATGAC 62.120 66.667 0.50 0.00 44.52 3.06
6446 6628 2.249844 TGCCCTTTTATAGCCGTAGC 57.750 50.000 0.00 0.00 40.32 3.58
6447 6629 2.876550 GGTTGCCCTTTTATAGCCGTAG 59.123 50.000 0.00 0.00 0.00 3.51
6448 6630 2.506644 AGGTTGCCCTTTTATAGCCGTA 59.493 45.455 0.00 0.00 38.13 4.02
6449 6631 1.283905 AGGTTGCCCTTTTATAGCCGT 59.716 47.619 0.00 0.00 38.13 5.68
6450 6632 1.947456 GAGGTTGCCCTTTTATAGCCG 59.053 52.381 0.00 0.00 42.86 5.52
6451 6633 2.307768 GGAGGTTGCCCTTTTATAGCC 58.692 52.381 0.00 0.00 42.86 3.93
6452 6634 2.307768 GGGAGGTTGCCCTTTTATAGC 58.692 52.381 0.00 0.00 42.86 2.97
6453 6635 2.572290 CGGGAGGTTGCCCTTTTATAG 58.428 52.381 0.00 0.00 46.44 1.31
6454 6636 1.213430 CCGGGAGGTTGCCCTTTTATA 59.787 52.381 0.00 0.00 46.44 0.98
6455 6637 0.033503 CCGGGAGGTTGCCCTTTTAT 60.034 55.000 0.00 0.00 46.44 1.40
6456 6638 1.381076 CCGGGAGGTTGCCCTTTTA 59.619 57.895 0.00 0.00 46.44 1.52
6457 6639 2.117423 CCGGGAGGTTGCCCTTTT 59.883 61.111 0.00 0.00 46.44 2.27
6481 6663 2.568935 GAAATGCGAGCTGTGGCGTC 62.569 60.000 0.00 0.00 44.37 5.19
6482 6664 2.669569 AAATGCGAGCTGTGGCGT 60.670 55.556 0.00 0.00 44.37 5.68
6483 6665 2.099062 GAAATGCGAGCTGTGGCG 59.901 61.111 0.00 0.00 44.37 5.69
6484 6666 2.486966 GGAAATGCGAGCTGTGGC 59.513 61.111 0.00 0.00 39.06 5.01
6485 6667 2.409870 GGGGAAATGCGAGCTGTGG 61.410 63.158 0.00 0.00 0.00 4.17
6486 6668 2.409870 GGGGGAAATGCGAGCTGTG 61.410 63.158 0.00 0.00 0.00 3.66
6487 6669 2.044946 GGGGGAAATGCGAGCTGT 60.045 61.111 0.00 0.00 0.00 4.40
6503 6685 4.082523 TTTCTGCGCCGGAGAGGG 62.083 66.667 10.31 0.00 41.48 4.30
6504 6686 2.510238 CTTTCTGCGCCGGAGAGG 60.510 66.667 10.31 2.45 44.97 3.69
6505 6687 3.191539 GCTTTCTGCGCCGGAGAG 61.192 66.667 10.31 9.22 0.00 3.20
6506 6688 3.529341 TTGCTTTCTGCGCCGGAGA 62.529 57.895 10.31 3.51 46.63 3.71
6507 6689 3.049674 TTGCTTTCTGCGCCGGAG 61.050 61.111 5.05 1.55 46.63 4.63
6508 6690 3.353836 GTTGCTTTCTGCGCCGGA 61.354 61.111 5.05 0.00 46.63 5.14
6509 6691 3.659092 TGTTGCTTTCTGCGCCGG 61.659 61.111 4.18 0.00 46.63 6.13
6510 6692 2.427410 GTGTTGCTTTCTGCGCCG 60.427 61.111 4.18 0.00 46.63 6.46
6511 6693 1.081840 GAGTGTTGCTTTCTGCGCC 60.082 57.895 4.18 0.00 46.63 6.53
6512 6694 0.110464 GAGAGTGTTGCTTTCTGCGC 60.110 55.000 0.00 0.00 46.63 6.09
6513 6695 0.514691 GGAGAGTGTTGCTTTCTGCG 59.485 55.000 0.00 0.00 46.63 5.18
6514 6696 0.877743 GGGAGAGTGTTGCTTTCTGC 59.122 55.000 0.00 0.00 43.25 4.26
6515 6697 1.072965 AGGGGAGAGTGTTGCTTTCTG 59.927 52.381 0.00 0.00 0.00 3.02
6516 6698 1.349357 GAGGGGAGAGTGTTGCTTTCT 59.651 52.381 0.00 0.00 0.00 2.52
6517 6699 1.349357 AGAGGGGAGAGTGTTGCTTTC 59.651 52.381 0.00 0.00 0.00 2.62
6518 6700 1.439543 AGAGGGGAGAGTGTTGCTTT 58.560 50.000 0.00 0.00 0.00 3.51
6519 6701 1.349357 GAAGAGGGGAGAGTGTTGCTT 59.651 52.381 0.00 0.00 0.00 3.91
6520 6702 0.980423 GAAGAGGGGAGAGTGTTGCT 59.020 55.000 0.00 0.00 0.00 3.91
6521 6703 0.035915 GGAAGAGGGGAGAGTGTTGC 60.036 60.000 0.00 0.00 0.00 4.17
6522 6704 0.615850 GGGAAGAGGGGAGAGTGTTG 59.384 60.000 0.00 0.00 0.00 3.33
6523 6705 0.905337 CGGGAAGAGGGGAGAGTGTT 60.905 60.000 0.00 0.00 0.00 3.32
6524 6706 1.305381 CGGGAAGAGGGGAGAGTGT 60.305 63.158 0.00 0.00 0.00 3.55
6525 6707 2.726351 GCGGGAAGAGGGGAGAGTG 61.726 68.421 0.00 0.00 0.00 3.51
6526 6708 2.364448 GCGGGAAGAGGGGAGAGT 60.364 66.667 0.00 0.00 0.00 3.24
6527 6709 3.157949 GGCGGGAAGAGGGGAGAG 61.158 72.222 0.00 0.00 0.00 3.20
6533 6715 4.194720 CTCGTCGGCGGGAAGAGG 62.195 72.222 1.08 0.00 44.51 3.69
6534 6716 3.132139 TCTCGTCGGCGGGAAGAG 61.132 66.667 10.88 10.92 45.65 2.85
6539 6721 2.494918 ATCTTTCTCGTCGGCGGG 59.505 61.111 10.62 6.11 40.60 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.