Multiple sequence alignment - TraesCS2D01G291000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G291000 chr2D 100.000 3666 0 0 3758 7423 373218698 373222363 0.000000e+00 6770
1 TraesCS2D01G291000 chr2D 100.000 3464 0 0 1 3464 373214941 373218404 0.000000e+00 6397
2 TraesCS2D01G291000 chr2D 89.214 649 58 7 1 641 104255456 104256100 0.000000e+00 800
3 TraesCS2D01G291000 chr2D 88.820 644 65 4 3 641 248783036 248782395 0.000000e+00 784
4 TraesCS2D01G291000 chr2D 89.623 106 6 5 5168 5271 178776452 178776554 6.040000e-26 130
5 TraesCS2D01G291000 chr2A 92.852 2826 133 36 672 3464 504290457 504287668 0.000000e+00 4036
6 TraesCS2D01G291000 chr2A 91.382 1520 86 26 5244 6737 504286223 504284723 0.000000e+00 2039
7 TraesCS2D01G291000 chr2A 91.550 1432 93 14 3758 5173 504287632 504286213 0.000000e+00 1949
8 TraesCS2D01G291000 chr2A 90.720 722 17 7 6721 7423 504279398 504278708 0.000000e+00 917
9 TraesCS2D01G291000 chr2B 91.930 1425 87 15 3766 5173 442788835 442790248 0.000000e+00 1969
10 TraesCS2D01G291000 chr2B 89.281 1390 74 30 5255 6628 442790247 442791577 0.000000e+00 1672
11 TraesCS2D01G291000 chr2B 95.543 920 27 6 1305 2215 442786537 442787451 0.000000e+00 1459
12 TraesCS2D01G291000 chr2B 92.813 807 28 7 6630 7423 442791631 442792420 0.000000e+00 1142
13 TraesCS2D01G291000 chr2B 95.033 604 25 3 2272 2875 442787453 442788051 0.000000e+00 944
14 TraesCS2D01G291000 chr2B 93.456 596 32 7 2873 3464 442788209 442788801 0.000000e+00 878
15 TraesCS2D01G291000 chr2B 96.894 322 10 0 728 1049 442785624 442785945 2.360000e-149 540
16 TraesCS2D01G291000 chr5B 88.804 652 58 8 1 641 254252045 254252692 0.000000e+00 785
17 TraesCS2D01G291000 chr5D 88.717 647 63 7 1 641 533793650 533793008 0.000000e+00 782
18 TraesCS2D01G291000 chr5D 94.681 94 4 1 5172 5265 381563917 381563825 2.160000e-30 145
19 TraesCS2D01G291000 chr4D 88.545 646 66 6 1 641 298769301 298768659 0.000000e+00 776
20 TraesCS2D01G291000 chr4D 88.444 649 64 8 1 641 360570373 360569728 0.000000e+00 773
21 TraesCS2D01G291000 chr4B 88.527 645 66 6 1 641 290922388 290923028 0.000000e+00 774
22 TraesCS2D01G291000 chr6D 88.426 648 66 6 1 641 108742810 108743455 0.000000e+00 773
23 TraesCS2D01G291000 chr7D 88.372 645 69 3 1 641 83900692 83901334 0.000000e+00 771
24 TraesCS2D01G291000 chr5A 96.552 87 3 0 5172 5258 302308519 302308433 2.160000e-30 145
25 TraesCS2D01G291000 chr7A 92.079 101 4 4 5160 5257 639594936 639595035 1.000000e-28 139
26 TraesCS2D01G291000 chr7A 91.089 101 8 1 5163 5263 67676653 67676752 1.300000e-27 135
27 TraesCS2D01G291000 chr1A 93.617 94 5 1 5164 5256 465510629 465510722 1.000000e-28 139
28 TraesCS2D01G291000 chr1A 91.919 99 6 2 5162 5258 582452002 582452100 3.610000e-28 137
29 TraesCS2D01G291000 chr1A 89.815 108 6 5 5168 5272 486046164 486046059 4.670000e-27 134
30 TraesCS2D01G291000 chr4A 92.632 95 7 0 5169 5263 744188297 744188203 3.610000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G291000 chr2D 373214941 373222363 7422 False 6583.500000 6770 100.000000 1 7423 2 chr2D.!!$F3 7422
1 TraesCS2D01G291000 chr2D 104255456 104256100 644 False 800.000000 800 89.214000 1 641 1 chr2D.!!$F1 640
2 TraesCS2D01G291000 chr2D 248782395 248783036 641 True 784.000000 784 88.820000 3 641 1 chr2D.!!$R1 638
3 TraesCS2D01G291000 chr2A 504284723 504290457 5734 True 2674.666667 4036 91.928000 672 6737 3 chr2A.!!$R2 6065
4 TraesCS2D01G291000 chr2A 504278708 504279398 690 True 917.000000 917 90.720000 6721 7423 1 chr2A.!!$R1 702
5 TraesCS2D01G291000 chr2B 442785624 442792420 6796 False 1229.142857 1969 93.564286 728 7423 7 chr2B.!!$F1 6695
6 TraesCS2D01G291000 chr5B 254252045 254252692 647 False 785.000000 785 88.804000 1 641 1 chr5B.!!$F1 640
7 TraesCS2D01G291000 chr5D 533793008 533793650 642 True 782.000000 782 88.717000 1 641 1 chr5D.!!$R2 640
8 TraesCS2D01G291000 chr4D 298768659 298769301 642 True 776.000000 776 88.545000 1 641 1 chr4D.!!$R1 640
9 TraesCS2D01G291000 chr4D 360569728 360570373 645 True 773.000000 773 88.444000 1 641 1 chr4D.!!$R2 640
10 TraesCS2D01G291000 chr4B 290922388 290923028 640 False 774.000000 774 88.527000 1 641 1 chr4B.!!$F1 640
11 TraesCS2D01G291000 chr6D 108742810 108743455 645 False 773.000000 773 88.426000 1 641 1 chr6D.!!$F1 640
12 TraesCS2D01G291000 chr7D 83900692 83901334 642 False 771.000000 771 88.372000 1 641 1 chr7D.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 58 0.037232 GCAACCCACTCTTAGAGCGT 60.037 55.000 9.44 0.32 32.04 5.07 F
1062 1090 0.104934 TCCCTATGCCCCCTCTTCTC 60.105 60.000 0.00 0.00 0.00 2.87 F
1133 1655 0.248539 CCTAGTCGCAAGTCGCTACC 60.249 60.000 0.00 0.00 37.00 3.18 F
1140 1662 0.535797 GCAAGTCGCTACCCTTACCT 59.464 55.000 0.00 0.00 37.77 3.08 F
2156 2691 0.598158 CAAACGCCAGCAGCATTTGT 60.598 50.000 10.90 0.00 46.79 2.83 F
2200 2735 1.003223 GACACCGAACCAAAAACTCCG 60.003 52.381 0.00 0.00 0.00 4.63 F
2935 3630 1.076350 AGAGCCTCCATAGACGCCTAT 59.924 52.381 0.00 0.00 36.06 2.57 F
4273 4986 0.788391 GAGCTTGCATTGTGCTTTGC 59.212 50.000 3.41 5.18 45.31 3.68 F
5150 5867 0.693049 TTCTGCTCCCCTCAACCTTC 59.307 55.000 0.00 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1074 1102 0.472734 TGGTTGGTTGGGGGATTTGG 60.473 55.000 0.00 0.0 0.00 3.28 R
2621 3156 0.458543 TCTTCGAGCCGCATCTGAAC 60.459 55.000 0.00 0.0 0.00 3.18 R
2976 3672 2.432510 CCATCTTAGAAGACGGAAGCCT 59.567 50.000 0.00 0.0 40.73 4.58 R
2982 3678 3.700038 ACACTACCCATCTTAGAAGACGG 59.300 47.826 0.00 0.0 38.10 4.79 R
4050 4761 1.984990 CACATGCATAAAACACGTGCC 59.015 47.619 17.22 0.0 38.06 5.01 R
4181 4893 1.486310 TGCTCATATCGAACCTTGCCT 59.514 47.619 0.00 0.0 0.00 4.75 R
4454 5167 1.352156 GCCGAGTAAAGCTGGTGTCG 61.352 60.000 0.00 0.0 0.00 4.35 R
5169 5886 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.000 0.00 0.0 0.00 2.73 R
6458 7187 0.239347 CTGCTGCGGGAAAGACTTTG 59.761 55.000 4.85 0.0 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 52 3.569194 TTGTTGAGCAACCCACTCTTA 57.431 42.857 10.54 0.00 40.46 2.10
55 58 0.037232 GCAACCCACTCTTAGAGCGT 60.037 55.000 9.44 0.32 32.04 5.07
80 83 6.945938 TTGAGTTTAAAATCCACCGAGAAA 57.054 33.333 12.73 0.00 0.00 2.52
151 154 4.424061 TCTAAGTTTAGTACGCTTCGCA 57.576 40.909 0.00 0.00 32.61 5.10
170 173 4.339530 TCGCATATTACTCTTGAGAGCTGT 59.660 41.667 7.91 0.00 45.79 4.40
189 192 7.832187 AGAGCTGTAAACTCTCTAGACAGTTAT 59.168 37.037 13.06 7.14 40.52 1.89
204 207 5.046910 ACAGTTATGTGCCAATTTCTTCG 57.953 39.130 0.00 0.00 38.57 3.79
217 220 3.662247 TTTCTTCGGAGACCAAGAGTC 57.338 47.619 0.00 0.00 46.71 3.36
352 358 9.606631 GAGAGTTTATCTTCCATGTTAAGTCAT 57.393 33.333 5.29 0.00 38.84 3.06
497 505 4.032786 CGTGTGATTTACTTCGATGCATGA 59.967 41.667 2.46 0.00 32.37 3.07
504 512 9.541143 TGATTTACTTCGATGCATGATTTAGTA 57.459 29.630 2.46 4.77 0.00 1.82
505 513 9.798885 GATTTACTTCGATGCATGATTTAGTAC 57.201 33.333 2.46 0.00 0.00 2.73
564 572 0.613260 TCACTTATTCCGCTGCTGGT 59.387 50.000 9.66 0.00 0.00 4.00
633 648 4.732957 ACCCCCTCTAGTAGACATACTTCT 59.267 45.833 0.00 0.00 42.39 2.85
641 656 8.659925 TCTAGTAGACATACTTCTTTCCTACG 57.340 38.462 0.00 0.00 42.39 3.51
642 657 8.263640 TCTAGTAGACATACTTCTTTCCTACGT 58.736 37.037 0.00 0.00 42.39 3.57
643 658 9.539825 CTAGTAGACATACTTCTTTCCTACGTA 57.460 37.037 0.00 0.00 42.39 3.57
644 659 8.436046 AGTAGACATACTTCTTTCCTACGTAG 57.564 38.462 15.92 15.92 39.27 3.51
645 660 8.263640 AGTAGACATACTTCTTTCCTACGTAGA 58.736 37.037 24.15 7.36 39.27 2.59
646 661 7.319142 AGACATACTTCTTTCCTACGTAGAC 57.681 40.000 24.15 0.00 0.00 2.59
647 662 6.036953 AGACATACTTCTTTCCTACGTAGACG 59.963 42.308 24.15 8.30 46.33 4.18
669 684 6.500775 CGTATTTCGTTACATACATCCGTT 57.499 37.500 0.00 0.00 34.52 4.44
670 685 6.925600 CGTATTTCGTTACATACATCCGTTT 58.074 36.000 0.00 0.00 34.52 3.60
671 686 6.837323 CGTATTTCGTTACATACATCCGTTTG 59.163 38.462 0.00 0.00 34.52 2.93
672 687 6.971527 ATTTCGTTACATACATCCGTTTGA 57.028 33.333 0.00 0.00 0.00 2.69
673 688 6.397831 TTTCGTTACATACATCCGTTTGAG 57.602 37.500 0.00 0.00 0.00 3.02
674 689 5.063180 TCGTTACATACATCCGTTTGAGT 57.937 39.130 0.00 0.00 0.00 3.41
675 690 6.193514 TCGTTACATACATCCGTTTGAGTA 57.806 37.500 0.00 0.00 0.00 2.59
676 691 6.798482 TCGTTACATACATCCGTTTGAGTAT 58.202 36.000 0.00 0.00 0.00 2.12
677 692 6.914215 TCGTTACATACATCCGTTTGAGTATC 59.086 38.462 0.00 0.00 0.00 2.24
709 724 9.618890 TTTTATACAGAATCAGAAATAGCAGCT 57.381 29.630 0.00 0.00 0.00 4.24
711 726 5.095145 ACAGAATCAGAAATAGCAGCTCA 57.905 39.130 0.00 0.00 0.00 4.26
712 727 5.494724 ACAGAATCAGAAATAGCAGCTCAA 58.505 37.500 0.00 0.00 0.00 3.02
713 728 5.942236 ACAGAATCAGAAATAGCAGCTCAAA 59.058 36.000 0.00 0.00 0.00 2.69
714 729 6.432162 ACAGAATCAGAAATAGCAGCTCAAAA 59.568 34.615 0.00 0.00 0.00 2.44
715 730 6.746364 CAGAATCAGAAATAGCAGCTCAAAAC 59.254 38.462 0.00 0.00 0.00 2.43
717 732 6.579666 ATCAGAAATAGCAGCTCAAAACAA 57.420 33.333 0.00 0.00 0.00 2.83
718 733 6.389830 TCAGAAATAGCAGCTCAAAACAAA 57.610 33.333 0.00 0.00 0.00 2.83
720 735 6.697019 TCAGAAATAGCAGCTCAAAACAAAAC 59.303 34.615 0.00 0.00 0.00 2.43
721 736 5.985530 AGAAATAGCAGCTCAAAACAAAACC 59.014 36.000 0.00 0.00 0.00 3.27
723 738 3.169355 AGCAGCTCAAAACAAAACCAG 57.831 42.857 0.00 0.00 0.00 4.00
724 739 2.497273 AGCAGCTCAAAACAAAACCAGT 59.503 40.909 0.00 0.00 0.00 4.00
726 741 3.796717 GCAGCTCAAAACAAAACCAGTAC 59.203 43.478 0.00 0.00 0.00 2.73
756 778 3.714391 AGTACCAATCGAGGCGAAATAC 58.286 45.455 0.00 0.00 39.99 1.89
785 807 1.801771 CGCAATAACTTTGACCGTCCA 59.198 47.619 0.00 0.00 0.00 4.02
895 917 2.593436 CACGACCGCCCCAACTTT 60.593 61.111 0.00 0.00 0.00 2.66
1049 1077 6.989155 TTTCTACGATGGTATGTTCCCTAT 57.011 37.500 0.00 0.00 0.00 2.57
1062 1090 0.104934 TCCCTATGCCCCCTCTTCTC 60.105 60.000 0.00 0.00 0.00 2.87
1065 1093 0.761802 CTATGCCCCCTCTTCTCCAC 59.238 60.000 0.00 0.00 0.00 4.02
1066 1094 0.343372 TATGCCCCCTCTTCTCCACT 59.657 55.000 0.00 0.00 0.00 4.00
1067 1095 1.277580 ATGCCCCCTCTTCTCCACTG 61.278 60.000 0.00 0.00 0.00 3.66
1069 1097 1.920325 CCCCCTCTTCTCCACTGCA 60.920 63.158 0.00 0.00 0.00 4.41
1070 1098 1.298014 CCCCTCTTCTCCACTGCAC 59.702 63.158 0.00 0.00 0.00 4.57
1072 1100 1.298014 CCTCTTCTCCACTGCACCC 59.702 63.158 0.00 0.00 0.00 4.61
1073 1101 1.298014 CTCTTCTCCACTGCACCCC 59.702 63.158 0.00 0.00 0.00 4.95
1074 1102 2.190488 CTCTTCTCCACTGCACCCCC 62.190 65.000 0.00 0.00 0.00 5.40
1133 1655 0.248539 CCTAGTCGCAAGTCGCTACC 60.249 60.000 0.00 0.00 37.00 3.18
1139 1661 0.804933 CGCAAGTCGCTACCCTTACC 60.805 60.000 0.00 0.00 39.08 2.85
1140 1662 0.535797 GCAAGTCGCTACCCTTACCT 59.464 55.000 0.00 0.00 37.77 3.08
1148 1670 2.241160 GCTACCCTTACCTCTCCTAGC 58.759 57.143 0.00 0.00 0.00 3.42
1159 1681 3.149196 CCTCTCCTAGCTGTCTCATCTC 58.851 54.545 0.00 0.00 0.00 2.75
1170 1692 3.785486 TGTCTCATCTCGCAATTTCGAT 58.215 40.909 0.00 0.00 37.87 3.59
1194 1716 0.702316 GGGGGAAATACTGTGTGGGT 59.298 55.000 0.00 0.00 0.00 4.51
1203 1725 5.353394 AATACTGTGTGGGTATAGTGGTG 57.647 43.478 0.00 0.00 30.73 4.17
1232 1754 3.123959 GCTTGTTTCGCCGATTTGTAGTA 59.876 43.478 0.00 0.00 0.00 1.82
1238 1760 1.593006 CGCCGATTTGTAGTAGCAAGG 59.407 52.381 0.00 0.00 0.00 3.61
1258 1780 1.430632 GTCAGCATGGGTCATTGCG 59.569 57.895 0.00 0.00 36.16 4.85
1265 1787 0.744414 ATGGGTCATTGCGGTCGAAG 60.744 55.000 0.00 0.00 0.00 3.79
1287 1809 2.585845 CTGTGCTATGGCTATACGACG 58.414 52.381 1.68 0.00 39.59 5.12
1298 1820 5.180271 TGGCTATACGACGAAGGAAAATTT 58.820 37.500 0.00 0.00 0.00 1.82
1472 1996 2.063156 TGGTAAAAATTGCTGCGCTG 57.937 45.000 9.73 10.04 0.00 5.18
1578 2102 4.497473 TTCGCTGTTCAACCTTTTATGG 57.503 40.909 0.00 0.00 0.00 2.74
2020 2546 5.280164 TCACAATAAAATACATGCCGCATG 58.720 37.500 28.09 28.09 46.18 4.06
2156 2691 0.598158 CAAACGCCAGCAGCATTTGT 60.598 50.000 10.90 0.00 46.79 2.83
2175 2710 4.948608 TGTTCAAACTTGCGTAACTTCA 57.051 36.364 0.00 0.00 0.00 3.02
2176 2711 4.904116 TGTTCAAACTTGCGTAACTTCAG 58.096 39.130 0.00 0.00 0.00 3.02
2177 2712 4.632251 TGTTCAAACTTGCGTAACTTCAGA 59.368 37.500 0.00 0.00 0.00 3.27
2178 2713 5.198274 GTTCAAACTTGCGTAACTTCAGAG 58.802 41.667 0.00 0.00 0.00 3.35
2200 2735 1.003223 GACACCGAACCAAAAACTCCG 60.003 52.381 0.00 0.00 0.00 4.63
2221 2756 7.611855 ACTCCGAAAATGATTTACCTGAATCTT 59.388 33.333 0.00 0.00 37.04 2.40
2283 2818 8.732746 ATACTTAAAATAGAAGCGGAACACAT 57.267 30.769 0.00 0.00 0.00 3.21
2341 2876 4.797275 GCAAATGGAAGCTTAGCTGTTTGT 60.797 41.667 22.72 5.97 39.62 2.83
2387 2922 6.073003 GCTATACTTTCCACAATATGCCTGTC 60.073 42.308 0.00 0.00 0.00 3.51
2389 2924 1.378531 TTCCACAATATGCCTGTCGC 58.621 50.000 0.00 0.00 38.31 5.19
2414 2949 9.918630 GCACTAAATGGAATTGCTATAAATCAT 57.081 29.630 0.00 0.00 36.10 2.45
2441 2976 8.749354 GTCTCCATGTATTTTGGGTTTTCTTAT 58.251 33.333 0.00 0.00 34.85 1.73
2442 2977 9.983024 TCTCCATGTATTTTGGGTTTTCTTATA 57.017 29.630 0.00 0.00 34.85 0.98
2505 3040 3.811702 CTTGGAGAGGACTGCCCA 58.188 61.111 0.00 0.00 37.41 5.36
2608 3143 6.352016 TCTGTTTTGTGATCTCTCTAAGCT 57.648 37.500 0.00 0.00 0.00 3.74
2609 3144 6.763355 TCTGTTTTGTGATCTCTCTAAGCTT 58.237 36.000 3.48 3.48 0.00 3.74
2610 3145 7.220030 TCTGTTTTGTGATCTCTCTAAGCTTT 58.780 34.615 3.20 0.00 0.00 3.51
2739 3274 5.366768 AGGCTTCTGCTACATTAATGACCTA 59.633 40.000 22.16 3.47 39.59 3.08
2754 3289 8.575649 TTAATGACCTAGTTTTGGGAATTCTC 57.424 34.615 5.23 0.82 0.00 2.87
2859 3394 3.316029 TCACTGACAGGTTCATGCTTTTG 59.684 43.478 7.51 0.00 32.17 2.44
2866 3401 4.832266 ACAGGTTCATGCTTTTGTGGATAA 59.168 37.500 0.00 0.00 0.00 1.75
2935 3630 1.076350 AGAGCCTCCATAGACGCCTAT 59.924 52.381 0.00 0.00 36.06 2.57
2981 3677 5.046304 TCAGTTTAGTTGCTATCTCAGGCTT 60.046 40.000 0.00 0.00 0.00 4.35
2982 3678 5.293079 CAGTTTAGTTGCTATCTCAGGCTTC 59.707 44.000 0.00 0.00 0.00 3.86
2983 3679 2.998316 AGTTGCTATCTCAGGCTTCC 57.002 50.000 0.00 0.00 0.00 3.46
3012 3708 2.902608 AGATGGGTAGTGTGAGGTTGA 58.097 47.619 0.00 0.00 0.00 3.18
3025 3721 8.079211 AGTGTGAGGTTGATGTATAGTAATGT 57.921 34.615 0.00 0.00 0.00 2.71
3278 3978 6.363882 TCAATATTGGGCATGAGTTGTATGA 58.636 36.000 15.36 0.00 0.00 2.15
3290 3990 7.587629 CATGAGTTGTATGATGTTTGTTGTCT 58.412 34.615 0.00 0.00 0.00 3.41
3298 3998 8.729756 TGTATGATGTTTGTTGTCTCCTATTTG 58.270 33.333 0.00 0.00 0.00 2.32
3307 4007 6.472016 TGTTGTCTCCTATTTGCTTATGTCA 58.528 36.000 0.00 0.00 0.00 3.58
3336 4036 8.463930 AAAGTTGGAATGTGAACTCTCAATTA 57.536 30.769 0.00 0.00 31.02 1.40
3383 4083 6.816140 ACAAAACTGAGTTACAATGGGTTTTG 59.184 34.615 19.71 19.71 45.53 2.44
3388 4088 4.346418 TGAGTTACAATGGGTTTTGGCATT 59.654 37.500 0.00 0.00 0.00 3.56
3390 4090 5.789521 AGTTACAATGGGTTTTGGCATTAC 58.210 37.500 0.00 0.00 0.00 1.89
3417 4117 4.348168 ACTCAAAGTTGATGGTACTGGAGT 59.652 41.667 0.00 0.00 36.79 3.85
3427 4127 9.046296 GTTGATGGTACTGGAGTTAATCAATAG 57.954 37.037 11.50 0.00 34.98 1.73
3443 4143 7.573968 AATCAATAGTTCTAGGAACCATTGC 57.426 36.000 19.09 0.00 32.08 3.56
3449 4149 3.179443 TCTAGGAACCATTGCGACATC 57.821 47.619 0.00 0.00 0.00 3.06
3805 4505 3.618690 ACTCTTGTCTCCATTACTGGC 57.381 47.619 0.00 0.00 42.80 4.85
3885 4595 7.149202 TCTATATTTGATAAAGGGTGGTGCT 57.851 36.000 0.00 0.00 0.00 4.40
3890 4600 5.975693 TTGATAAAGGGTGGTGCTAAAAG 57.024 39.130 0.00 0.00 0.00 2.27
3891 4601 4.993028 TGATAAAGGGTGGTGCTAAAAGT 58.007 39.130 0.00 0.00 0.00 2.66
3931 4641 6.594159 TGATGCATGTATTATCATCTGAGCTG 59.406 38.462 2.46 0.00 37.00 4.24
3933 4643 5.930569 TGCATGTATTATCATCTGAGCTGAC 59.069 40.000 0.00 0.00 0.00 3.51
3985 4695 1.741706 CTCTTGCGGTCATGCTTGAAT 59.258 47.619 3.51 0.00 32.48 2.57
4025 4735 6.039941 TCACTTCATCGTTTTTGTAATGGGTT 59.960 34.615 0.00 0.00 0.00 4.11
4027 4737 7.863375 CACTTCATCGTTTTTGTAATGGGTTTA 59.137 33.333 0.00 0.00 0.00 2.01
4028 4738 7.863877 ACTTCATCGTTTTTGTAATGGGTTTAC 59.136 33.333 0.00 0.00 40.59 2.01
4029 4739 7.513371 TCATCGTTTTTGTAATGGGTTTACT 57.487 32.000 0.00 0.00 40.77 2.24
4033 4744 8.408743 TCGTTTTTGTAATGGGTTTACTTTTG 57.591 30.769 0.00 0.00 40.77 2.44
4034 4745 7.010275 TCGTTTTTGTAATGGGTTTACTTTTGC 59.990 33.333 0.00 0.00 40.77 3.68
4036 4747 4.506886 TGTAATGGGTTTACTTTTGCCG 57.493 40.909 0.00 0.00 40.77 5.69
4050 4761 8.627487 TTACTTTTGCCGATAATGCTATTTTG 57.373 30.769 0.00 0.00 0.00 2.44
4055 4766 3.554524 CCGATAATGCTATTTTGGCACG 58.445 45.455 0.00 0.00 42.69 5.34
4057 4768 3.968096 CGATAATGCTATTTTGGCACGTG 59.032 43.478 12.28 12.28 42.69 4.49
4066 4777 2.871182 TTTGGCACGTGTTTTATGCA 57.129 40.000 18.38 0.00 41.27 3.96
4069 4780 1.611006 TGGCACGTGTTTTATGCATGT 59.389 42.857 18.38 0.00 41.27 3.21
4075 4786 2.910482 CGTGTTTTATGCATGTGTCTGC 59.090 45.455 10.16 0.00 42.62 4.26
4087 4798 1.417517 TGTGTCTGCATGAGTGGAAGT 59.582 47.619 0.00 0.00 0.00 3.01
4088 4799 2.158769 TGTGTCTGCATGAGTGGAAGTT 60.159 45.455 0.00 0.00 0.00 2.66
4089 4800 2.880890 GTGTCTGCATGAGTGGAAGTTT 59.119 45.455 0.00 0.00 0.00 2.66
4118 4830 7.585286 TTTATGCAATTGTCTTTGATTGAGC 57.415 32.000 7.40 0.00 35.74 4.26
4139 4851 3.814945 CTGCGAGTTCTCCAATCAAAAC 58.185 45.455 0.00 0.00 0.00 2.43
4140 4852 2.552315 TGCGAGTTCTCCAATCAAAACC 59.448 45.455 0.00 0.00 0.00 3.27
4146 4858 2.722094 TCTCCAATCAAAACCATCCCG 58.278 47.619 0.00 0.00 0.00 5.14
4156 4868 4.019681 TCAAAACCATCCCGTCAACTAGAT 60.020 41.667 0.00 0.00 0.00 1.98
4170 4882 7.117812 CCGTCAACTAGATTTTGTAACTCACAT 59.882 37.037 0.00 0.00 36.90 3.21
4171 4883 9.135843 CGTCAACTAGATTTTGTAACTCACATA 57.864 33.333 0.00 0.00 36.90 2.29
4210 4922 4.572389 GGTTCGATATGAGCAGAAATGTGT 59.428 41.667 0.00 0.00 0.00 3.72
4213 4925 3.303593 CGATATGAGCAGAAATGTGTGCC 60.304 47.826 0.42 0.00 45.07 5.01
4264 4977 1.815003 GGCACTTACAGAGCTTGCATT 59.185 47.619 6.63 0.00 32.26 3.56
4265 4978 2.415090 GGCACTTACAGAGCTTGCATTG 60.415 50.000 6.63 0.00 32.26 2.82
4273 4986 0.788391 GAGCTTGCATTGTGCTTTGC 59.212 50.000 3.41 5.18 45.31 3.68
4286 4999 7.531534 GCATTGTGCTTTGCTTTTAAATAGTTG 59.468 33.333 0.00 0.00 40.96 3.16
4290 5003 8.763356 TGTGCTTTGCTTTTAAATAGTTGAATG 58.237 29.630 0.00 0.00 0.00 2.67
4319 5032 6.292542 CGTGCTGTTAAGTAATGATGATGAGG 60.293 42.308 0.00 0.00 0.00 3.86
4325 5038 7.615365 TGTTAAGTAATGATGATGAGGGCTTTT 59.385 33.333 0.00 0.00 0.00 2.27
4366 5079 4.679373 AGACGGATGTGCTCTTCATATT 57.321 40.909 4.34 0.00 0.00 1.28
4368 5081 3.470709 ACGGATGTGCTCTTCATATTGG 58.529 45.455 4.34 0.00 0.00 3.16
4424 5137 6.071320 AGACAGGGAAGGAAAATATTATGCC 58.929 40.000 0.00 0.00 0.00 4.40
4454 5167 5.036117 TCCCACTTAAAGATGGCATAGAC 57.964 43.478 0.00 0.00 34.37 2.59
4459 5172 5.005779 CACTTAAAGATGGCATAGACGACAC 59.994 44.000 0.00 0.00 0.00 3.67
4556 5269 9.632807 CTCTAGTCTTATTGAGGTATGTAATGC 57.367 37.037 0.00 0.00 0.00 3.56
4675 5388 6.295292 GCCTAGGGTGTTTCAATCTTTCAATT 60.295 38.462 11.72 0.00 0.00 2.32
4685 5398 5.775686 TCAATCTTTCAATTGAAGGTGCTG 58.224 37.500 24.55 19.60 41.47 4.41
4703 5416 9.515226 AAGGTGCTGTCTAAAACTTGATATTAA 57.485 29.630 0.00 0.00 0.00 1.40
4708 5421 7.910683 GCTGTCTAAAACTTGATATTAAGTGCC 59.089 37.037 13.14 0.64 40.58 5.01
4752 5465 4.039488 TCCAGATGTGTAAACTAACCGTGT 59.961 41.667 0.00 0.00 0.00 4.49
4755 5468 6.424509 CCAGATGTGTAAACTAACCGTGTTTA 59.575 38.462 0.00 0.00 38.41 2.01
4764 5477 5.027293 ACTAACCGTGTTTAACCTTGTCT 57.973 39.130 0.00 0.00 0.00 3.41
4788 5501 7.502226 TCTCCACTGTTGAAATTGTGTATTCTT 59.498 33.333 0.00 0.00 0.00 2.52
4789 5502 7.424803 TCCACTGTTGAAATTGTGTATTCTTG 58.575 34.615 0.00 0.00 0.00 3.02
4849 5562 8.458573 TGGACTTTAAGTTTCATTGAGCTAAA 57.541 30.769 0.00 0.00 0.00 1.85
4966 5683 3.077359 CTGCTGGTAAGGGAGAAAACTG 58.923 50.000 0.00 0.00 0.00 3.16
4979 5696 6.323996 AGGGAGAAAACTGTCATCGTATGATA 59.676 38.462 0.00 0.00 42.04 2.15
4981 5698 7.494625 GGGAGAAAACTGTCATCGTATGATAAA 59.505 37.037 0.00 0.00 42.04 1.40
4990 5707 7.344441 TGTCATCGTATGATAAATTTTGCTCG 58.656 34.615 0.00 0.00 42.04 5.03
5005 5722 6.903883 TTTTGCTCGTTCTAGGATATTCAC 57.096 37.500 0.00 0.00 0.00 3.18
5068 5785 1.363744 AAGAGAATGTAGCACGCTGC 58.636 50.000 0.72 0.12 45.46 5.25
5104 5821 3.165875 TGGGGTTCTTCTAGACACAGAG 58.834 50.000 0.00 0.00 0.00 3.35
5143 5860 1.981256 TTGTTTGTTCTGCTCCCCTC 58.019 50.000 0.00 0.00 0.00 4.30
5150 5867 0.693049 TTCTGCTCCCCTCAACCTTC 59.307 55.000 0.00 0.00 0.00 3.46
5169 5886 5.123227 CCTTCTTGGTTTGAGTGACAGTAA 58.877 41.667 0.00 0.00 0.00 2.24
5171 5888 5.353394 TCTTGGTTTGAGTGACAGTAACT 57.647 39.130 0.00 0.00 0.00 2.24
5172 5889 6.474140 TCTTGGTTTGAGTGACAGTAACTA 57.526 37.500 0.00 0.00 0.00 2.24
5173 5890 6.278363 TCTTGGTTTGAGTGACAGTAACTAC 58.722 40.000 0.00 0.00 0.00 2.73
5174 5891 5.864418 TGGTTTGAGTGACAGTAACTACT 57.136 39.130 0.00 0.00 36.90 2.57
5175 5892 5.839621 TGGTTTGAGTGACAGTAACTACTC 58.160 41.667 0.00 0.00 39.88 2.59
5176 5893 5.221382 TGGTTTGAGTGACAGTAACTACTCC 60.221 44.000 0.00 0.00 38.96 3.85
5177 5894 5.228665 GTTTGAGTGACAGTAACTACTCCC 58.771 45.833 0.00 0.00 38.96 4.30
5178 5895 4.383931 TGAGTGACAGTAACTACTCCCT 57.616 45.455 0.00 0.00 38.96 4.20
5179 5896 4.333690 TGAGTGACAGTAACTACTCCCTC 58.666 47.826 0.00 0.00 38.96 4.30
5180 5897 3.695556 GAGTGACAGTAACTACTCCCTCC 59.304 52.174 0.00 0.00 34.84 4.30
5181 5898 2.422832 GTGACAGTAACTACTCCCTCCG 59.577 54.545 0.00 0.00 33.46 4.63
5182 5899 2.040813 TGACAGTAACTACTCCCTCCGT 59.959 50.000 0.00 0.00 33.46 4.69
5183 5900 2.682352 GACAGTAACTACTCCCTCCGTC 59.318 54.545 0.00 0.00 33.46 4.79
5184 5901 2.022934 CAGTAACTACTCCCTCCGTCC 58.977 57.143 0.00 0.00 33.46 4.79
5185 5902 1.064091 AGTAACTACTCCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
5186 5903 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
5187 5904 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
5188 5905 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
5189 5906 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
5190 5907 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
5191 5908 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5192 5909 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
5193 5910 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
5194 5911 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
5195 5912 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
5196 5913 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
5197 5914 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
5198 5915 5.371472 TCCCTCCGTCCCAAAATATAAGAAT 59.629 40.000 0.00 0.00 0.00 2.40
5199 5916 5.473504 CCCTCCGTCCCAAAATATAAGAATG 59.526 44.000 0.00 0.00 0.00 2.67
5200 5917 6.062095 CCTCCGTCCCAAAATATAAGAATGT 58.938 40.000 0.00 0.00 0.00 2.71
5201 5918 6.546034 CCTCCGTCCCAAAATATAAGAATGTT 59.454 38.462 0.00 0.00 0.00 2.71
5202 5919 7.068226 CCTCCGTCCCAAAATATAAGAATGTTT 59.932 37.037 0.00 0.00 0.00 2.83
5203 5920 8.356000 TCCGTCCCAAAATATAAGAATGTTTT 57.644 30.769 0.00 0.00 37.01 2.43
5204 5921 8.808092 TCCGTCCCAAAATATAAGAATGTTTTT 58.192 29.630 0.00 0.00 35.09 1.94
5205 5922 8.868916 CCGTCCCAAAATATAAGAATGTTTTTG 58.131 33.333 0.00 0.00 35.09 2.44
5206 5923 9.632807 CGTCCCAAAATATAAGAATGTTTTTGA 57.367 29.630 7.74 0.00 35.09 2.69
5248 5965 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
5249 5966 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
5250 5967 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
5251 5968 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
5252 5969 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
5253 5970 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
5262 5981 3.532232 TGGGACAGAGGGAGTAGTAATCT 59.468 47.826 0.00 0.00 0.00 2.40
5274 5993 9.381038 AGGGAGTAGTAATCTTTCAATATAGCA 57.619 33.333 0.00 0.00 0.00 3.49
5275 5994 9.998106 GGGAGTAGTAATCTTTCAATATAGCAA 57.002 33.333 0.00 0.00 0.00 3.91
5343 6062 8.887036 AGGTGAAAAGTGAAAATAAATCCAAC 57.113 30.769 0.00 0.00 0.00 3.77
5344 6063 8.704668 AGGTGAAAAGTGAAAATAAATCCAACT 58.295 29.630 0.00 0.00 0.00 3.16
5345 6064 9.974980 GGTGAAAAGTGAAAATAAATCCAACTA 57.025 29.630 0.00 0.00 0.00 2.24
5363 6082 7.363031 TCCAACTATGTCCTAATACTCTTCCT 58.637 38.462 0.00 0.00 0.00 3.36
5394 6113 9.350951 AGTACTACCTTTTGTAAGCAATTCTTT 57.649 29.630 0.00 0.00 36.25 2.52
5411 6130 8.131731 GCAATTCTTTCTTAGTGGTTATCCATC 58.868 37.037 0.00 0.00 46.20 3.51
5413 6132 5.914033 TCTTTCTTAGTGGTTATCCATCGG 58.086 41.667 0.00 0.00 46.20 4.18
5415 6134 2.035449 TCTTAGTGGTTATCCATCGGCG 59.965 50.000 0.00 0.00 46.20 6.46
5502 6221 7.170998 GGTCCAGATTATACATTGAAAGTACCG 59.829 40.741 0.00 0.00 0.00 4.02
5527 6246 7.362056 CGAATCTGAACATGGTATGAACCTTTT 60.362 37.037 0.00 0.00 46.91 2.27
5536 6255 7.451255 ACATGGTATGAACCTTTTCTGATTGAA 59.549 33.333 0.00 0.00 46.91 2.69
5539 6258 8.160765 TGGTATGAACCTTTTCTGATTGAACTA 58.839 33.333 0.00 0.00 46.91 2.24
5565 6284 1.578897 TCTATGCCTGCCTGGTGTTA 58.421 50.000 0.00 0.00 38.35 2.41
5569 6288 1.302949 GCCTGCCTGGTGTTATGGA 59.697 57.895 0.00 0.00 38.35 3.41
5570 6289 0.323360 GCCTGCCTGGTGTTATGGAA 60.323 55.000 0.00 0.00 38.35 3.53
5571 6290 1.890573 GCCTGCCTGGTGTTATGGAAA 60.891 52.381 0.00 0.00 38.35 3.13
5572 6291 1.818674 CCTGCCTGGTGTTATGGAAAC 59.181 52.381 0.00 0.00 0.00 2.78
5593 6312 3.131933 ACATTTAACTGCTGTTTGGTGCA 59.868 39.130 14.54 0.00 37.59 4.57
5599 6318 0.038067 TGCTGTTTGGTGCATCATGC 60.038 50.000 0.00 1.35 45.29 4.06
5604 6323 3.806380 TGTTTGGTGCATCATGCTTTTT 58.194 36.364 11.84 0.00 45.31 1.94
5605 6324 4.953667 TGTTTGGTGCATCATGCTTTTTA 58.046 34.783 11.84 0.00 45.31 1.52
5606 6325 5.549347 TGTTTGGTGCATCATGCTTTTTAT 58.451 33.333 11.84 0.00 45.31 1.40
5607 6326 6.695429 TGTTTGGTGCATCATGCTTTTTATA 58.305 32.000 11.84 0.00 45.31 0.98
5608 6327 7.329499 TGTTTGGTGCATCATGCTTTTTATAT 58.671 30.769 11.84 0.00 45.31 0.86
5609 6328 8.473219 TGTTTGGTGCATCATGCTTTTTATATA 58.527 29.630 11.84 0.00 45.31 0.86
5614 6333 7.063780 GGTGCATCATGCTTTTTATATATTGGC 59.936 37.037 11.84 0.00 45.31 4.52
5615 6334 7.816031 GTGCATCATGCTTTTTATATATTGGCT 59.184 33.333 11.84 0.00 45.31 4.75
5616 6335 9.022884 TGCATCATGCTTTTTATATATTGGCTA 57.977 29.630 11.84 0.00 45.31 3.93
5617 6336 9.294030 GCATCATGCTTTTTATATATTGGCTAC 57.706 33.333 1.02 0.00 40.96 3.58
5619 6338 8.932434 TCATGCTTTTTATATATTGGCTACCA 57.068 30.769 0.00 0.00 0.00 3.25
5620 6339 8.792633 TCATGCTTTTTATATATTGGCTACCAC 58.207 33.333 0.00 0.00 30.78 4.16
5631 6352 2.116238 TGGCTACCACCTAGAACATCC 58.884 52.381 0.00 0.00 0.00 3.51
5632 6353 2.292918 TGGCTACCACCTAGAACATCCT 60.293 50.000 0.00 0.00 0.00 3.24
5636 6357 4.636206 GCTACCACCTAGAACATCCTTTTG 59.364 45.833 0.00 0.00 0.00 2.44
5662 6383 6.782082 TCTTTAGAGATGTGTAGATGTGCT 57.218 37.500 0.00 0.00 0.00 4.40
5812 6533 5.626142 TGCAAGAGGTTAGTTTGTATTCCA 58.374 37.500 0.00 0.00 0.00 3.53
5813 6534 6.245408 TGCAAGAGGTTAGTTTGTATTCCAT 58.755 36.000 0.00 0.00 0.00 3.41
5874 6596 4.384056 GGATGGATACCATGTGAAGACTG 58.616 47.826 8.06 0.00 45.26 3.51
5887 6609 6.061022 TGTGAAGACTGGAATATGCCTTTA 57.939 37.500 0.11 0.00 0.00 1.85
5919 6642 6.205784 TGTGTCTTTATTTTTCTTGCTTCCG 58.794 36.000 0.00 0.00 0.00 4.30
5955 6678 5.128919 AGTTTGTTGTTTCTGAGCAGAGAT 58.871 37.500 0.00 0.00 38.88 2.75
5964 6687 2.881513 TCTGAGCAGAGATCGGATACAC 59.118 50.000 0.00 0.00 27.75 2.90
6057 6780 3.967401 TGAACGTGTTGATCGTAAGTGA 58.033 40.909 0.00 0.00 40.69 3.41
6058 6781 4.361420 TGAACGTGTTGATCGTAAGTGAA 58.639 39.130 0.00 0.00 40.69 3.18
6059 6782 4.804665 TGAACGTGTTGATCGTAAGTGAAA 59.195 37.500 0.00 0.00 40.69 2.69
6060 6783 5.464057 TGAACGTGTTGATCGTAAGTGAAAT 59.536 36.000 0.00 0.00 40.69 2.17
6090 6813 1.002366 GGCATGTCTTACAGTGCTCG 58.998 55.000 0.00 0.00 34.95 5.03
6178 6901 3.483196 CGCGCCACATAATGAGAAATTTG 59.517 43.478 0.00 0.00 0.00 2.32
6198 6921 8.866970 AATTTGCCCTGAAATGAAATAAATGT 57.133 26.923 0.00 0.00 0.00 2.71
6200 6923 6.602410 TGCCCTGAAATGAAATAAATGTGA 57.398 33.333 0.00 0.00 0.00 3.58
6257 6980 5.809001 TGTATTCTTCTTCATTCAGCCAGT 58.191 37.500 0.00 0.00 0.00 4.00
6265 6988 1.074405 TCATTCAGCCAGTTCCTTGCT 59.926 47.619 0.00 0.00 32.54 3.91
6273 6996 2.562738 GCCAGTTCCTTGCTTGGTATTT 59.437 45.455 0.00 0.00 0.00 1.40
6292 7015 6.490381 GGTATTTTCTCCAGTCCTTTTGAACT 59.510 38.462 0.00 0.00 0.00 3.01
6304 7030 5.011023 GTCCTTTTGAACTGGGTCATCATTT 59.989 40.000 0.00 0.00 0.00 2.32
6306 7032 6.099557 TCCTTTTGAACTGGGTCATCATTTTT 59.900 34.615 0.00 0.00 0.00 1.94
6458 7187 3.643763 CGATGTATGTAGGTGGAAGCTC 58.356 50.000 0.00 0.00 44.61 4.09
6587 7325 2.488153 GTGGGAGAATGTAACACTTGCC 59.512 50.000 0.00 0.00 0.00 4.52
6598 7336 2.543777 ACACTTGCCGACTTGTACAT 57.456 45.000 0.00 0.00 0.00 2.29
6618 7356 8.753498 GTACATCATTGTACGATTTCACATTC 57.247 34.615 0.00 0.00 46.32 2.67
6632 7419 9.961266 CGATTTCACATTCGTACTTAAAATACA 57.039 29.630 0.00 0.00 0.00 2.29
6652 7439 5.817616 ACAATCTTTTCAGTACGTACGTG 57.182 39.130 30.25 14.35 0.00 4.49
6683 7470 4.519540 TTAGCCTTTGGATTGTTCTTGC 57.480 40.909 0.00 0.00 0.00 4.01
6691 7479 2.170166 GGATTGTTCTTGCATGGGTGA 58.830 47.619 0.00 0.00 0.00 4.02
6730 7525 4.584029 AGCAACTGATTGATAACGTTCG 57.416 40.909 2.82 0.00 38.15 3.95
6744 7539 2.401351 ACGTTCGTAGAGGCAAAACTC 58.599 47.619 0.00 0.00 38.43 3.01
6965 7782 1.270777 CTTTTGCAAGCGGCTCAACG 61.271 55.000 1.45 0.00 45.15 4.10
7091 7908 4.753662 CTCAGGGTCGGGGTCGGA 62.754 72.222 0.00 0.00 36.95 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 52 6.206498 GTGGATTTTAAACTCAAAACGCTCT 58.794 36.000 7.73 0.00 30.57 4.09
55 58 6.945938 TCTCGGTGGATTTTAAACTCAAAA 57.054 33.333 7.73 0.00 0.00 2.44
87 90 6.431543 CACTATCTAATTCTTCGGCTCTAGGA 59.568 42.308 0.00 0.00 0.00 2.94
151 154 9.196139 AGAGTTTACAGCTCTCAAGAGTAATAT 57.804 33.333 8.73 0.00 43.85 1.28
170 173 6.436218 TGGCACATAACTGTCTAGAGAGTTTA 59.564 38.462 32.77 21.13 41.42 2.01
184 187 4.331968 TCCGAAGAAATTGGCACATAACT 58.668 39.130 0.00 0.00 39.30 2.24
189 192 2.151202 GTCTCCGAAGAAATTGGCACA 58.849 47.619 0.00 0.00 31.93 4.57
204 207 2.039084 ACCACAATGACTCTTGGTCTCC 59.961 50.000 0.00 0.00 44.74 3.71
217 220 4.151335 CAGACTTCTTCGAGAACCACAATG 59.849 45.833 0.00 0.00 29.89 2.82
352 358 1.987855 CGTCTGGTTGGAGGGGCTA 60.988 63.158 0.00 0.00 0.00 3.93
543 551 2.292267 CCAGCAGCGGAATAAGTGAAT 58.708 47.619 0.00 0.00 0.00 2.57
598 607 5.098663 ACTAGAGGGGGTGAATGAAAGTTA 58.901 41.667 0.00 0.00 0.00 2.24
603 612 4.264668 TGTCTACTAGAGGGGGTGAATGAA 60.265 45.833 0.00 0.00 0.00 2.57
604 613 3.271225 TGTCTACTAGAGGGGGTGAATGA 59.729 47.826 0.00 0.00 0.00 2.57
647 662 7.897920 TCAAACGGATGTATGTAACGAAATAC 58.102 34.615 0.00 0.00 0.00 1.89
648 663 7.760794 ACTCAAACGGATGTATGTAACGAAATA 59.239 33.333 0.00 0.00 0.00 1.40
649 664 6.592607 ACTCAAACGGATGTATGTAACGAAAT 59.407 34.615 0.00 0.00 0.00 2.17
650 665 5.927689 ACTCAAACGGATGTATGTAACGAAA 59.072 36.000 0.00 0.00 0.00 3.46
651 666 5.472148 ACTCAAACGGATGTATGTAACGAA 58.528 37.500 0.00 0.00 0.00 3.85
652 667 5.063180 ACTCAAACGGATGTATGTAACGA 57.937 39.130 0.00 0.00 0.00 3.85
653 668 6.693978 TGATACTCAAACGGATGTATGTAACG 59.306 38.462 0.00 0.00 0.00 3.18
654 669 7.705325 ACTGATACTCAAACGGATGTATGTAAC 59.295 37.037 0.00 0.00 0.00 2.50
655 670 7.778083 ACTGATACTCAAACGGATGTATGTAA 58.222 34.615 0.00 0.00 0.00 2.41
656 671 7.342769 ACTGATACTCAAACGGATGTATGTA 57.657 36.000 0.00 0.00 0.00 2.29
657 672 6.222038 ACTGATACTCAAACGGATGTATGT 57.778 37.500 0.00 0.00 0.00 2.29
658 673 8.818141 ATAACTGATACTCAAACGGATGTATG 57.182 34.615 0.00 0.00 0.00 2.39
659 674 9.832445 AAATAACTGATACTCAAACGGATGTAT 57.168 29.630 0.00 0.00 0.00 2.29
660 675 9.661563 AAAATAACTGATACTCAAACGGATGTA 57.338 29.630 0.00 0.00 0.00 2.29
661 676 8.561738 AAAATAACTGATACTCAAACGGATGT 57.438 30.769 0.00 0.00 0.00 3.06
687 702 6.824553 TGAGCTGCTATTTCTGATTCTGTAT 58.175 36.000 0.15 0.00 0.00 2.29
708 723 9.072294 CAAAAGTAGTACTGGTTTTGTTTTGAG 57.928 33.333 23.60 7.99 35.89 3.02
709 724 8.794553 TCAAAAGTAGTACTGGTTTTGTTTTGA 58.205 29.630 27.12 20.93 39.70 2.69
711 726 8.799367 ACTCAAAAGTAGTACTGGTTTTGTTTT 58.201 29.630 27.12 17.47 39.70 2.43
712 727 8.344446 ACTCAAAAGTAGTACTGGTTTTGTTT 57.656 30.769 27.12 18.96 39.70 2.83
713 728 7.933215 ACTCAAAAGTAGTACTGGTTTTGTT 57.067 32.000 27.12 19.18 39.70 2.83
714 729 7.496920 GGTACTCAAAAGTAGTACTGGTTTTGT 59.503 37.037 27.12 18.78 45.63 2.83
715 730 7.496591 TGGTACTCAAAAGTAGTACTGGTTTTG 59.503 37.037 24.83 24.83 45.63 2.44
717 732 7.128234 TGGTACTCAAAAGTAGTACTGGTTT 57.872 36.000 5.39 2.00 45.63 3.27
718 733 6.736110 TGGTACTCAAAAGTAGTACTGGTT 57.264 37.500 5.39 0.00 45.63 3.67
720 735 6.530534 CGATTGGTACTCAAAAGTAGTACTGG 59.469 42.308 5.39 0.00 45.63 4.00
721 736 7.310664 TCGATTGGTACTCAAAAGTAGTACTG 58.689 38.462 5.39 0.00 45.63 2.74
723 738 6.750963 CCTCGATTGGTACTCAAAAGTAGTAC 59.249 42.308 5.09 5.09 45.62 2.73
724 739 6.626623 GCCTCGATTGGTACTCAAAAGTAGTA 60.627 42.308 0.00 0.00 38.66 1.82
726 741 4.567159 GCCTCGATTGGTACTCAAAAGTAG 59.433 45.833 0.00 0.00 38.66 2.57
756 778 0.802494 AAGTTATTGCGCGGGTGAAG 59.198 50.000 8.83 0.00 0.00 3.02
785 807 3.199946 AGGATCGTGTTGGTACCATGATT 59.800 43.478 17.17 0.00 38.38 2.57
1049 1077 1.920325 CAGTGGAGAAGAGGGGGCA 60.920 63.158 0.00 0.00 0.00 5.36
1072 1100 1.159664 TTGGTTGGGGGATTTGGGG 59.840 57.895 0.00 0.00 0.00 4.96
1073 1101 1.198094 GGTTGGTTGGGGGATTTGGG 61.198 60.000 0.00 0.00 0.00 4.12
1074 1102 0.472734 TGGTTGGTTGGGGGATTTGG 60.473 55.000 0.00 0.00 0.00 3.28
1075 1103 0.684535 GTGGTTGGTTGGGGGATTTG 59.315 55.000 0.00 0.00 0.00 2.32
1076 1104 0.472925 GGTGGTTGGTTGGGGGATTT 60.473 55.000 0.00 0.00 0.00 2.17
1077 1105 1.157513 GGTGGTTGGTTGGGGGATT 59.842 57.895 0.00 0.00 0.00 3.01
1078 1106 2.858655 GGTGGTTGGTTGGGGGAT 59.141 61.111 0.00 0.00 0.00 3.85
1079 1107 3.892162 CGGTGGTTGGTTGGGGGA 61.892 66.667 0.00 0.00 0.00 4.81
1133 1655 3.219281 GAGACAGCTAGGAGAGGTAAGG 58.781 54.545 0.00 0.00 33.44 2.69
1139 1661 2.807967 CGAGATGAGACAGCTAGGAGAG 59.192 54.545 0.00 0.00 26.98 3.20
1140 1662 2.844946 CGAGATGAGACAGCTAGGAGA 58.155 52.381 0.00 0.00 26.98 3.71
1148 1670 3.182182 TCGAAATTGCGAGATGAGACAG 58.818 45.455 3.83 0.00 35.01 3.51
1159 1681 2.036733 TCCCCCTACTATCGAAATTGCG 59.963 50.000 0.00 0.00 0.00 4.85
1170 1692 4.035112 CCACACAGTATTTCCCCCTACTA 58.965 47.826 0.00 0.00 0.00 1.82
1194 1716 4.079980 ACAAGCACAACACACCACTATA 57.920 40.909 0.00 0.00 0.00 1.31
1203 1725 1.199852 CGGCGAAACAAGCACAACAC 61.200 55.000 0.00 0.00 36.08 3.32
1232 1754 2.749044 CCATGCTGACGCCTTGCT 60.749 61.111 0.00 0.00 34.43 3.91
1238 1760 1.430632 CAATGACCCATGCTGACGC 59.569 57.895 0.00 0.00 0.00 5.19
1278 1800 8.181487 TCAAGAAATTTTCCTTCGTCGTATAG 57.819 34.615 5.52 0.00 0.00 1.31
1282 1804 5.689819 CATCAAGAAATTTTCCTTCGTCGT 58.310 37.500 5.52 0.00 0.00 4.34
1287 1809 7.009907 GCACATAGCATCAAGAAATTTTCCTTC 59.990 37.037 5.52 0.00 44.79 3.46
1402 1924 7.018826 TGAAGCATACACTAACGCAATTTTAC 58.981 34.615 0.00 0.00 0.00 2.01
1578 2102 6.691388 CACAGAAAAGTAACCAAGTAAGCAAC 59.309 38.462 0.00 0.00 0.00 4.17
1961 2487 6.482308 GCCTGTGAGAGTACTTTGTAAAAGAA 59.518 38.462 6.73 0.00 0.00 2.52
1971 2497 2.370189 AGCAAAGCCTGTGAGAGTACTT 59.630 45.455 0.00 0.00 0.00 2.24
1973 2499 2.464157 AGCAAAGCCTGTGAGAGTAC 57.536 50.000 0.00 0.00 0.00 2.73
1981 2507 4.935352 TTGTGAAAATAGCAAAGCCTGT 57.065 36.364 0.00 0.00 0.00 4.00
2156 2691 5.220586 CACTCTGAAGTTACGCAAGTTTGAA 60.221 40.000 0.00 0.00 40.72 2.69
2175 2710 2.681344 GTTTTTGGTTCGGTGTCACTCT 59.319 45.455 2.35 0.00 0.00 3.24
2176 2711 2.681344 AGTTTTTGGTTCGGTGTCACTC 59.319 45.455 2.35 0.00 0.00 3.51
2177 2712 2.681344 GAGTTTTTGGTTCGGTGTCACT 59.319 45.455 2.35 0.00 0.00 3.41
2178 2713 2.223409 GGAGTTTTTGGTTCGGTGTCAC 60.223 50.000 0.00 0.00 0.00 3.67
2258 2793 8.732746 ATGTGTTCCGCTTCTATTTTAAGTAT 57.267 30.769 0.00 0.00 0.00 2.12
2259 2794 8.556213 AATGTGTTCCGCTTCTATTTTAAGTA 57.444 30.769 0.00 0.00 0.00 2.24
2260 2795 7.448748 AATGTGTTCCGCTTCTATTTTAAGT 57.551 32.000 0.00 0.00 0.00 2.24
2283 2818 6.857437 TGTTGAGAGATCAGACCATCTTAA 57.143 37.500 0.00 0.00 32.94 1.85
2318 2853 3.582714 AACAGCTAAGCTTCCATTTGC 57.417 42.857 0.00 0.00 36.40 3.68
2387 2922 8.075574 TGATTTATAGCAATTCCATTTAGTGCG 58.924 33.333 0.00 0.00 40.17 5.34
2415 2950 6.590234 AGAAAACCCAAAATACATGGAGAC 57.410 37.500 0.00 0.00 40.56 3.36
2461 2996 6.244654 TGTCTGGGACAATGAATACAATGAA 58.755 36.000 0.00 0.00 39.78 2.57
2505 3040 8.133627 CAGAACTCAAACAAATCATCAAAGACT 58.866 33.333 0.00 0.00 0.00 3.24
2614 3149 3.181511 CGAGCCGCATCTGAACAATAAAA 60.182 43.478 0.00 0.00 0.00 1.52
2621 3156 0.458543 TCTTCGAGCCGCATCTGAAC 60.459 55.000 0.00 0.00 0.00 3.18
2739 3274 3.425162 AGCTCGAGAATTCCCAAAACT 57.575 42.857 18.75 0.00 0.00 2.66
2754 3289 3.715495 AGCATGATACTTGAGAAGCTCG 58.285 45.455 0.00 0.00 32.35 5.03
2889 3584 4.518590 AGATCAGTGAGACACATCCTATCG 59.481 45.833 0.00 0.00 36.74 2.92
2976 3672 2.432510 CCATCTTAGAAGACGGAAGCCT 59.567 50.000 0.00 0.00 40.73 4.58
2981 3677 3.952323 CACTACCCATCTTAGAAGACGGA 59.048 47.826 5.96 0.00 40.73 4.69
2982 3678 3.700038 ACACTACCCATCTTAGAAGACGG 59.300 47.826 0.00 0.00 38.10 4.79
2983 3679 4.398358 TCACACTACCCATCTTAGAAGACG 59.602 45.833 0.00 0.00 37.98 4.18
2998 3694 9.464714 CATTACTATACATCAACCTCACACTAC 57.535 37.037 0.00 0.00 0.00 2.73
3012 3708 6.885952 AGAGACAGCGACATTACTATACAT 57.114 37.500 0.00 0.00 0.00 2.29
3081 3778 6.270463 TGTGGAAACTTACAGTCATTACCCTA 59.730 38.462 0.00 0.00 0.00 3.53
3204 3903 2.683968 AGCGATGAACTACTGCGAAAA 58.316 42.857 0.00 0.00 0.00 2.29
3273 3973 7.698130 GCAAATAGGAGACAACAAACATCATAC 59.302 37.037 0.00 0.00 0.00 2.39
3278 3978 6.655078 AAGCAAATAGGAGACAACAAACAT 57.345 33.333 0.00 0.00 0.00 2.71
3298 3998 8.863049 CACATTCCAACTTTAATTGACATAAGC 58.137 33.333 0.00 0.00 0.00 3.09
3307 4007 8.463930 TGAGAGTTCACATTCCAACTTTAATT 57.536 30.769 0.00 0.00 32.83 1.40
3344 4044 8.147642 ACTCAGTTTTGTAAATGTCTCTTCTG 57.852 34.615 0.00 0.00 31.55 3.02
3360 4060 6.345298 CCAAAACCCATTGTAACTCAGTTTT 58.655 36.000 0.00 0.00 33.82 2.43
3383 4083 6.974622 CCATCAACTTTGAGTAATGTAATGCC 59.025 38.462 0.00 0.00 41.08 4.40
3388 4088 7.822334 CCAGTACCATCAACTTTGAGTAATGTA 59.178 37.037 13.36 3.28 41.08 2.29
3390 4090 6.878923 TCCAGTACCATCAACTTTGAGTAATG 59.121 38.462 9.91 9.91 41.08 1.90
3417 4117 9.120538 GCAATGGTTCCTAGAACTATTGATTAA 57.879 33.333 32.82 4.71 45.83 1.40
3427 4127 2.695359 TGTCGCAATGGTTCCTAGAAC 58.305 47.619 0.00 0.00 0.00 3.01
3441 4141 2.839486 AGAAACTGAAGGATGTCGCA 57.161 45.000 0.00 0.00 0.00 5.10
3769 4469 9.604626 GAGACAAGAGTTCAATGATAAAAGTTG 57.395 33.333 0.00 0.00 0.00 3.16
3770 4470 8.787852 GGAGACAAGAGTTCAATGATAAAAGTT 58.212 33.333 0.00 0.00 0.00 2.66
3805 4505 4.019681 TGGCTATTTGGATAGAATACCGGG 60.020 45.833 6.32 0.00 37.97 5.73
3875 4585 2.108250 ACATCACTTTTAGCACCACCCT 59.892 45.455 0.00 0.00 0.00 4.34
3876 4586 2.514803 ACATCACTTTTAGCACCACCC 58.485 47.619 0.00 0.00 0.00 4.61
3880 4590 5.689383 TGAAGAACATCACTTTTAGCACC 57.311 39.130 0.00 0.00 0.00 5.01
3931 4641 5.928839 TCAGTTGACAGCTTCTATTCTTGTC 59.071 40.000 0.00 0.00 0.00 3.18
3933 4643 5.121454 GGTCAGTTGACAGCTTCTATTCTTG 59.879 44.000 13.73 0.00 46.47 3.02
4025 4735 7.704472 CCAAAATAGCATTATCGGCAAAAGTAA 59.296 33.333 0.00 0.00 0.00 2.24
4027 4737 6.042143 CCAAAATAGCATTATCGGCAAAAGT 58.958 36.000 0.00 0.00 0.00 2.66
4028 4738 5.050837 GCCAAAATAGCATTATCGGCAAAAG 60.051 40.000 0.00 0.00 38.20 2.27
4029 4739 4.808364 GCCAAAATAGCATTATCGGCAAAA 59.192 37.500 0.00 0.00 38.20 2.44
4033 4744 3.308530 GTGCCAAAATAGCATTATCGGC 58.691 45.455 0.00 0.00 43.29 5.54
4034 4745 3.003275 ACGTGCCAAAATAGCATTATCGG 59.997 43.478 0.00 0.00 43.29 4.18
4036 4747 4.920376 ACACGTGCCAAAATAGCATTATC 58.080 39.130 17.22 0.00 43.29 1.75
4050 4761 1.984990 CACATGCATAAAACACGTGCC 59.015 47.619 17.22 0.00 38.06 5.01
4066 4777 2.039480 ACTTCCACTCATGCAGACACAT 59.961 45.455 0.00 0.00 0.00 3.21
4069 4780 2.936919 AACTTCCACTCATGCAGACA 57.063 45.000 0.00 0.00 0.00 3.41
4070 4781 4.574599 AAAAACTTCCACTCATGCAGAC 57.425 40.909 0.00 0.00 0.00 3.51
4093 4804 7.874016 AGCTCAATCAAAGACAATTGCATAAAA 59.126 29.630 5.05 0.00 33.76 1.52
4098 4809 4.552355 CAGCTCAATCAAAGACAATTGCA 58.448 39.130 5.05 0.00 33.76 4.08
4118 4830 3.365364 GGTTTTGATTGGAGAACTCGCAG 60.365 47.826 0.00 0.00 0.00 5.18
4139 4851 4.261801 ACAAAATCTAGTTGACGGGATGG 58.738 43.478 0.00 0.00 0.00 3.51
4140 4852 6.594159 AGTTACAAAATCTAGTTGACGGGATG 59.406 38.462 0.00 0.00 0.00 3.51
4156 4868 9.706691 CTTTCCTCTAGTATGTGAGTTACAAAA 57.293 33.333 0.00 0.00 43.77 2.44
4170 4882 3.194968 CGAACCTTGCCTTTCCTCTAGTA 59.805 47.826 0.00 0.00 0.00 1.82
4171 4883 2.028020 CGAACCTTGCCTTTCCTCTAGT 60.028 50.000 0.00 0.00 0.00 2.57
4172 4884 2.233922 TCGAACCTTGCCTTTCCTCTAG 59.766 50.000 0.00 0.00 0.00 2.43
4181 4893 1.486310 TGCTCATATCGAACCTTGCCT 59.514 47.619 0.00 0.00 0.00 4.75
4264 4977 8.763356 CATTCAACTATTTAAAAGCAAAGCACA 58.237 29.630 0.00 0.00 0.00 4.57
4265 4978 8.764287 ACATTCAACTATTTAAAAGCAAAGCAC 58.236 29.630 0.00 0.00 0.00 4.40
4273 4986 7.803189 AGCACGTGACATTCAACTATTTAAAAG 59.197 33.333 22.23 0.00 0.00 2.27
4286 4999 5.585500 TTACTTAACAGCACGTGACATTC 57.415 39.130 22.23 0.00 0.00 2.67
4290 5003 5.347635 TCATCATTACTTAACAGCACGTGAC 59.652 40.000 22.23 10.94 0.00 3.67
4344 5057 4.679373 ATATGAAGAGCACATCCGTCTT 57.321 40.909 0.00 0.00 33.14 3.01
4348 5061 3.470709 ACCAATATGAAGAGCACATCCG 58.529 45.455 0.00 0.00 0.00 4.18
4366 5079 2.969821 AATGACAGCCAGGTAAACCA 57.030 45.000 1.26 0.00 38.89 3.67
4368 5081 4.846779 TCAAAATGACAGCCAGGTAAAC 57.153 40.909 0.00 0.00 0.00 2.01
4424 5137 5.450965 GCCATCTTTAAGTGGGATGTTGATG 60.451 44.000 12.84 0.00 36.18 3.07
4454 5167 1.352156 GCCGAGTAAAGCTGGTGTCG 61.352 60.000 0.00 0.00 0.00 4.35
4459 5172 4.759516 TTAAAAAGCCGAGTAAAGCTGG 57.240 40.909 0.00 0.00 39.87 4.85
4535 5248 6.708054 AGCAGCATTACATACCTCAATAAGAC 59.292 38.462 0.00 0.00 0.00 3.01
4556 5269 7.677454 TGGCAATAATCTACATGATAAGCAG 57.323 36.000 0.00 0.00 34.45 4.24
4675 5388 4.776349 TCAAGTTTTAGACAGCACCTTCA 58.224 39.130 0.00 0.00 0.00 3.02
4682 5395 7.910683 GGCACTTAATATCAAGTTTTAGACAGC 59.089 37.037 0.00 0.00 36.61 4.40
4685 5398 8.947115 AGTGGCACTTAATATCAAGTTTTAGAC 58.053 33.333 15.88 0.00 36.61 2.59
4708 5421 5.593909 TGGATGTTTGGCCAAATCTATAGTG 59.406 40.000 32.52 0.00 32.36 2.74
4738 5451 7.011389 AGACAAGGTTAAACACGGTTAGTTTAC 59.989 37.037 0.00 1.61 40.14 2.01
4752 5465 5.105567 TCAACAGTGGAGACAAGGTTAAA 57.894 39.130 0.00 0.00 46.06 1.52
4755 5468 3.644966 TTCAACAGTGGAGACAAGGTT 57.355 42.857 0.00 0.00 46.06 3.50
4764 5477 7.424803 CAAGAATACACAATTTCAACAGTGGA 58.575 34.615 0.00 0.00 36.35 4.02
4788 5501 3.320541 ACCATCAACGCAAGAAAATTCCA 59.679 39.130 0.00 0.00 43.62 3.53
4789 5502 3.913089 ACCATCAACGCAAGAAAATTCC 58.087 40.909 0.00 0.00 43.62 3.01
4941 5658 0.710588 TCTCCCTTACCAGCAGAGGA 59.289 55.000 0.00 0.00 32.11 3.71
4944 5661 2.979678 AGTTTTCTCCCTTACCAGCAGA 59.020 45.455 0.00 0.00 0.00 4.26
4966 5683 7.345192 ACGAGCAAAATTTATCATACGATGAC 58.655 34.615 0.00 0.00 43.01 3.06
4979 5696 8.398665 GTGAATATCCTAGAACGAGCAAAATTT 58.601 33.333 0.00 0.00 0.00 1.82
4981 5698 6.201044 CGTGAATATCCTAGAACGAGCAAAAT 59.799 38.462 0.00 0.00 33.03 1.82
5005 5722 4.616802 GTCACCTGCATGTTTGAAAATACG 59.383 41.667 0.00 0.00 0.00 3.06
5068 5785 1.181098 CCCCAGTTTCAACAGCCCAG 61.181 60.000 0.00 0.00 0.00 4.45
5150 5867 6.281405 AGTAGTTACTGTCACTCAAACCAAG 58.719 40.000 0.00 0.00 34.72 3.61
5169 5886 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.000 0.00 0.00 0.00 2.73
5171 5888 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5172 5889 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5173 5890 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
5174 5891 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
5175 5892 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
5176 5893 6.062095 ACATTCTTATATTTTGGGACGGAGG 58.938 40.000 0.00 0.00 0.00 4.30
5177 5894 7.568199 AACATTCTTATATTTTGGGACGGAG 57.432 36.000 0.00 0.00 0.00 4.63
5178 5895 7.948034 AAACATTCTTATATTTTGGGACGGA 57.052 32.000 0.00 0.00 0.00 4.69
5179 5896 8.868916 CAAAAACATTCTTATATTTTGGGACGG 58.131 33.333 0.00 0.00 37.34 4.79
5180 5897 9.632807 TCAAAAACATTCTTATATTTTGGGACG 57.367 29.630 8.80 0.00 39.94 4.79
5222 5939 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
5223 5940 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
5224 5941 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
5225 5942 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
5226 5943 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
5227 5944 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
5228 5945 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
5229 5946 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
5230 5947 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
5231 5948 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
5232 5949 6.906901 ACTACTCCCTCTGTCCCAAAATATAA 59.093 38.462 0.00 0.00 0.00 0.98
5233 5950 6.449956 ACTACTCCCTCTGTCCCAAAATATA 58.550 40.000 0.00 0.00 0.00 0.86
5234 5951 5.289510 ACTACTCCCTCTGTCCCAAAATAT 58.710 41.667 0.00 0.00 0.00 1.28
5235 5952 4.695606 ACTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
5236 5953 3.532102 ACTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
5237 5954 2.986050 ACTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
5238 5955 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
5239 5956 3.839323 TTACTACTCCCTCTGTCCCAA 57.161 47.619 0.00 0.00 0.00 4.12
5240 5957 3.532232 AGATTACTACTCCCTCTGTCCCA 59.468 47.826 0.00 0.00 0.00 4.37
5241 5958 4.187506 AGATTACTACTCCCTCTGTCCC 57.812 50.000 0.00 0.00 0.00 4.46
5242 5959 5.657302 TGAAAGATTACTACTCCCTCTGTCC 59.343 44.000 0.00 0.00 0.00 4.02
5243 5960 6.777213 TGAAAGATTACTACTCCCTCTGTC 57.223 41.667 0.00 0.00 0.00 3.51
5244 5961 7.741554 ATTGAAAGATTACTACTCCCTCTGT 57.258 36.000 0.00 0.00 0.00 3.41
5247 5964 9.863845 GCTATATTGAAAGATTACTACTCCCTC 57.136 37.037 0.00 0.00 0.00 4.30
5248 5965 9.381038 TGCTATATTGAAAGATTACTACTCCCT 57.619 33.333 0.00 0.00 0.00 4.20
5249 5966 9.998106 TTGCTATATTGAAAGATTACTACTCCC 57.002 33.333 0.00 0.00 0.00 4.30
5376 6095 9.185192 CCACTAAGAAAGAATTGCTTACAAAAG 57.815 33.333 0.00 0.00 39.77 2.27
5379 6098 7.817418 ACCACTAAGAAAGAATTGCTTACAA 57.183 32.000 0.00 0.00 40.87 2.41
5411 6130 1.988834 GCCATGTAAAACTCCCGCCG 61.989 60.000 0.00 0.00 0.00 6.46
5413 6132 1.102978 ATGCCATGTAAAACTCCCGC 58.897 50.000 0.00 0.00 0.00 6.13
5415 6134 5.405935 AGAAAATGCCATGTAAAACTCCC 57.594 39.130 0.00 0.00 0.00 4.30
5527 6246 9.935241 GGCATAGAATTAGATAGTTCAATCAGA 57.065 33.333 0.00 0.00 0.00 3.27
5536 6255 5.046014 CCAGGCAGGCATAGAATTAGATAGT 60.046 44.000 0.00 0.00 0.00 2.12
5539 6258 3.654806 ACCAGGCAGGCATAGAATTAGAT 59.345 43.478 0.00 0.00 43.14 1.98
5545 6264 0.698238 AACACCAGGCAGGCATAGAA 59.302 50.000 0.00 0.00 43.14 2.10
5565 6284 5.990996 CCAAACAGCAGTTAAATGTTTCCAT 59.009 36.000 4.65 0.00 43.37 3.41
5569 6288 4.570369 GCACCAAACAGCAGTTAAATGTTT 59.430 37.500 4.65 4.52 45.44 2.83
5570 6289 4.119136 GCACCAAACAGCAGTTAAATGTT 58.881 39.130 4.65 0.00 38.76 2.71
5571 6290 3.131933 TGCACCAAACAGCAGTTAAATGT 59.868 39.130 4.65 0.00 36.84 2.71
5572 6291 3.715495 TGCACCAAACAGCAGTTAAATG 58.285 40.909 0.00 0.00 36.84 2.32
5593 6312 9.532494 TGGTAGCCAATATATAAAAAGCATGAT 57.468 29.630 0.00 0.00 0.00 2.45
5604 6323 8.911018 ATGTTCTAGGTGGTAGCCAATATATA 57.089 34.615 0.00 0.00 34.18 0.86
5605 6324 7.092846 GGATGTTCTAGGTGGTAGCCAATATAT 60.093 40.741 0.00 0.00 34.18 0.86
5606 6325 6.212791 GGATGTTCTAGGTGGTAGCCAATATA 59.787 42.308 0.00 0.00 34.18 0.86
5607 6326 5.013183 GGATGTTCTAGGTGGTAGCCAATAT 59.987 44.000 0.00 0.00 34.18 1.28
5608 6327 4.347000 GGATGTTCTAGGTGGTAGCCAATA 59.653 45.833 0.00 0.00 34.18 1.90
5609 6328 3.136626 GGATGTTCTAGGTGGTAGCCAAT 59.863 47.826 0.00 0.00 34.18 3.16
5611 6330 2.116238 GGATGTTCTAGGTGGTAGCCA 58.884 52.381 0.00 0.00 0.00 4.75
5614 6333 5.805728 ACAAAAGGATGTTCTAGGTGGTAG 58.194 41.667 0.00 0.00 0.00 3.18
5615 6334 5.836024 ACAAAAGGATGTTCTAGGTGGTA 57.164 39.130 0.00 0.00 0.00 3.25
5616 6335 4.724279 ACAAAAGGATGTTCTAGGTGGT 57.276 40.909 0.00 0.00 0.00 4.16
5617 6336 5.770162 AGAAACAAAAGGATGTTCTAGGTGG 59.230 40.000 0.00 0.00 36.12 4.61
5619 6338 7.898014 AAAGAAACAAAAGGATGTTCTAGGT 57.102 32.000 0.00 0.00 36.12 3.08
5620 6339 9.284968 TCTAAAGAAACAAAAGGATGTTCTAGG 57.715 33.333 0.00 0.00 36.12 3.02
5627 6348 8.571336 ACACATCTCTAAAGAAACAAAAGGATG 58.429 33.333 0.00 0.00 34.49 3.51
5636 6357 7.547370 AGCACATCTACACATCTCTAAAGAAAC 59.453 37.037 0.00 0.00 34.49 2.78
5812 6533 5.288015 TGTTTCAACAATCAACATGCGAAT 58.712 33.333 0.00 0.00 35.67 3.34
5813 6534 4.676546 TGTTTCAACAATCAACATGCGAA 58.323 34.783 0.00 0.00 35.67 4.70
5874 6596 7.547227 ACACAAAAGATGTAAAGGCATATTCC 58.453 34.615 0.00 0.00 41.46 3.01
5919 6642 4.324267 ACAACAAACTACACTATCCTGGC 58.676 43.478 0.00 0.00 0.00 4.85
5955 6678 7.094592 TGCAAAATAAACTCATTGTGTATCCGA 60.095 33.333 0.00 0.00 29.19 4.55
5964 6687 6.146021 GTGGAACCTGCAAAATAAACTCATTG 59.854 38.462 0.00 0.00 0.00 2.82
6057 6780 8.052748 TGTAAGACATGCCAGAGGTATTTATTT 58.947 33.333 0.00 0.00 0.00 1.40
6058 6781 7.573710 TGTAAGACATGCCAGAGGTATTTATT 58.426 34.615 0.00 0.00 0.00 1.40
6059 6782 7.136822 TGTAAGACATGCCAGAGGTATTTAT 57.863 36.000 0.00 0.00 0.00 1.40
6060 6783 6.156256 ACTGTAAGACATGCCAGAGGTATTTA 59.844 38.462 0.00 0.00 37.43 1.40
6090 6813 7.591006 TCATCAAGTTTTTACTCGTCCATAC 57.409 36.000 0.00 0.00 0.00 2.39
6178 6901 6.703165 GGATCACATTTATTTCATTTCAGGGC 59.297 38.462 0.00 0.00 0.00 5.19
6257 6980 4.735369 TGGAGAAAATACCAAGCAAGGAA 58.265 39.130 1.01 0.00 32.93 3.36
6265 6988 6.369629 TCAAAAGGACTGGAGAAAATACCAA 58.630 36.000 0.00 0.00 35.67 3.67
6458 7187 0.239347 CTGCTGCGGGAAAGACTTTG 59.761 55.000 4.85 0.00 0.00 2.77
6483 7215 5.048364 CCATCCCACGATGTTAAACTGAAAA 60.048 40.000 0.00 0.00 43.87 2.29
6484 7216 4.457603 CCATCCCACGATGTTAAACTGAAA 59.542 41.667 0.00 0.00 43.87 2.69
6511 7245 7.886629 AAATGTCAATCAGCCAACTATGTAT 57.113 32.000 0.00 0.00 0.00 2.29
6512 7246 7.701539 AAAATGTCAATCAGCCAACTATGTA 57.298 32.000 0.00 0.00 0.00 2.29
6513 7247 6.594788 AAAATGTCAATCAGCCAACTATGT 57.405 33.333 0.00 0.00 0.00 2.29
6514 7248 7.067372 TCCTAAAATGTCAATCAGCCAACTATG 59.933 37.037 0.00 0.00 0.00 2.23
6632 7419 4.553323 AGCACGTACGTACTGAAAAGATT 58.447 39.130 22.34 0.00 0.00 2.40
6676 7463 1.620822 AAGGTCACCCATGCAAGAAC 58.379 50.000 0.00 0.00 0.00 3.01
6683 7470 4.040217 TCCAAATTCAAAAGGTCACCCATG 59.960 41.667 0.00 0.00 0.00 3.66
6691 7479 6.093909 CAGTTGCTTTTCCAAATTCAAAAGGT 59.906 34.615 14.43 0.00 39.19 3.50
6730 7525 4.109050 CTCTCATCGAGTTTTGCCTCTAC 58.891 47.826 0.00 0.00 34.95 2.59
6965 7782 2.799540 GCCGTCGAATCGAACCTGC 61.800 63.158 7.01 4.08 37.72 4.85
7091 7908 1.121407 TCCTCGCATGGGATCCGAAT 61.121 55.000 13.45 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.