Multiple sequence alignment - TraesCS2D01G290700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G290700 chr2D 100.000 7315 0 0 1 7315 372808096 372815410 0.000000e+00 13509.0
1 TraesCS2D01G290700 chr2D 97.093 172 5 0 519 690 551850373 551850544 2.580000e-74 291.0
2 TraesCS2D01G290700 chr2D 93.617 188 12 0 503 690 170450576 170450763 1.550000e-71 281.0
3 TraesCS2D01G290700 chr2D 77.045 379 69 13 6855 7221 584894943 584894571 1.240000e-47 202.0
4 TraesCS2D01G290700 chr2B 95.733 2812 89 8 690 3473 442333581 442336389 0.000000e+00 4499.0
5 TraesCS2D01G290700 chr2B 97.092 1685 37 3 3865 5546 442336426 442338101 0.000000e+00 2830.0
6 TraesCS2D01G290700 chr2B 91.710 1532 87 21 5545 7064 442338140 442339643 0.000000e+00 2089.0
7 TraesCS2D01G290700 chr2B 92.157 510 27 5 1 500 442333066 442333572 0.000000e+00 708.0
8 TraesCS2D01G290700 chr2B 93.636 220 11 1 7099 7315 442340255 442340474 7.080000e-85 326.0
9 TraesCS2D01G290700 chr2B 74.278 381 73 13 6855 7219 705501593 705501222 3.560000e-28 137.0
10 TraesCS2D01G290700 chr2A 95.741 1902 51 8 1598 3479 504549977 504548086 0.000000e+00 3037.0
11 TraesCS2D01G290700 chr2A 97.743 1684 29 4 3865 5546 504548027 504546351 0.000000e+00 2891.0
12 TraesCS2D01G290700 chr2A 91.167 1800 94 24 5544 7314 504546313 504544550 0.000000e+00 2383.0
13 TraesCS2D01G290700 chr2A 94.530 914 44 4 688 1596 504550996 504550084 0.000000e+00 1406.0
14 TraesCS2D01G290700 chr2A 85.072 489 46 13 27 503 504551471 504550998 2.390000e-129 473.0
15 TraesCS2D01G290700 chr2A 77.183 355 67 10 6855 7200 719199589 719199240 2.080000e-45 195.0
16 TraesCS2D01G290700 chr7D 96.526 403 13 1 3477 3879 113853175 113853576 0.000000e+00 665.0
17 TraesCS2D01G290700 chr7D 94.554 404 21 1 3477 3879 492887623 492887220 2.240000e-174 623.0
18 TraesCS2D01G290700 chr7D 95.455 176 7 1 519 694 32059928 32059754 5.590000e-71 279.0
19 TraesCS2D01G290700 chr5D 96.954 394 10 2 3478 3871 418290791 418290400 0.000000e+00 660.0
20 TraesCS2D01G290700 chr5D 96.144 389 13 2 3479 3867 264620041 264620427 1.040000e-177 634.0
21 TraesCS2D01G290700 chr5D 91.579 190 16 0 501 690 317672861 317673050 5.630000e-66 263.0
22 TraesCS2D01G290700 chr5D 92.000 50 4 0 4354 4403 431153798 431153749 3.660000e-08 71.3
23 TraesCS2D01G290700 chr3D 97.201 393 6 3 3477 3866 85608333 85608723 0.000000e+00 660.0
24 TraesCS2D01G290700 chr3D 95.522 402 18 0 3477 3878 600705250 600704849 1.720000e-180 643.0
25 TraesCS2D01G290700 chr3D 94.681 188 10 0 503 690 532169103 532168916 7.180000e-75 292.0
26 TraesCS2D01G290700 chr3D 94.972 179 9 0 505 683 68388118 68388296 1.550000e-71 281.0
27 TraesCS2D01G290700 chr3D 83.648 159 24 2 7068 7225 186605963 186606120 1.640000e-31 148.0
28 TraesCS2D01G290700 chr3D 75.704 284 40 17 5081 5362 301440157 301439901 1.670000e-21 115.0
29 TraesCS2D01G290700 chr3D 97.619 42 1 0 4354 4395 196949487 196949528 1.020000e-08 73.1
30 TraesCS2D01G290700 chr7A 94.307 404 21 2 3477 3879 272015296 272014894 1.040000e-172 617.0
31 TraesCS2D01G290700 chr7A 94.307 404 21 2 3477 3879 723772623 723772221 1.040000e-172 617.0
32 TraesCS2D01G290700 chr4A 94.307 404 21 2 3477 3879 107086957 107086555 1.040000e-172 617.0
33 TraesCS2D01G290700 chr1D 88.793 348 37 1 4506 4851 334462342 334462689 6.780000e-115 425.0
34 TraesCS2D01G290700 chr1D 87.966 349 40 1 4506 4852 334472557 334472905 1.900000e-110 411.0
35 TraesCS2D01G290700 chr1D 75.436 688 134 28 2612 3281 334471109 334471779 1.190000e-77 302.0
36 TraesCS2D01G290700 chr1D 81.509 265 37 11 2612 2873 334460814 334461069 2.670000e-49 207.0
37 TraesCS2D01G290700 chr1B 87.931 348 39 2 4506 4851 450024673 450025019 2.460000e-109 407.0
38 TraesCS2D01G290700 chr1B 87.356 348 42 1 4506 4851 450029836 450030183 1.480000e-106 398.0
39 TraesCS2D01G290700 chr1B 77.882 642 104 24 2658 3279 450023184 450023807 1.500000e-96 364.0
40 TraesCS2D01G290700 chr1A 87.679 349 39 3 4506 4851 432539877 432540224 3.180000e-108 403.0
41 TraesCS2D01G290700 chr1A 83.111 225 28 8 2612 2833 432533208 432533425 5.790000e-46 196.0
42 TraesCS2D01G290700 chr5A 91.837 196 16 0 500 695 448995669 448995864 2.600000e-69 274.0
43 TraesCS2D01G290700 chr5A 81.024 332 49 11 6901 7221 502596473 502596145 1.220000e-62 252.0
44 TraesCS2D01G290700 chr5A 90.000 50 5 0 4354 4403 546517839 546517790 1.700000e-06 65.8
45 TraesCS2D01G290700 chr4D 93.478 184 12 0 505 688 75785922 75786105 2.600000e-69 274.0
46 TraesCS2D01G290700 chr5B 91.192 193 15 2 503 694 487329534 487329343 2.020000e-65 261.0
47 TraesCS2D01G290700 chr6D 83.871 155 24 1 7067 7221 59630977 59631130 5.910000e-31 147.0
48 TraesCS2D01G290700 chr3B 85.496 131 16 3 7068 7197 267203836 267203964 4.600000e-27 134.0
49 TraesCS2D01G290700 chr3B 83.810 105 15 2 5078 5182 419767281 419767383 1.680000e-16 99.0
50 TraesCS2D01G290700 chr3B 97.619 42 1 0 4354 4395 279668468 279668509 1.020000e-08 73.1
51 TraesCS2D01G290700 chr3A 87.288 118 11 4 7086 7201 240396333 240396218 1.660000e-26 132.0
52 TraesCS2D01G290700 chr3A 97.619 42 1 0 4354 4395 251339686 251339727 1.020000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G290700 chr2D 372808096 372815410 7314 False 13509.0 13509 100.0000 1 7315 1 chr2D.!!$F2 7314
1 TraesCS2D01G290700 chr2B 442333066 442340474 7408 False 2090.4 4499 94.0656 1 7315 5 chr2B.!!$F1 7314
2 TraesCS2D01G290700 chr2A 504544550 504551471 6921 True 2038.0 3037 92.8506 27 7314 5 chr2A.!!$R2 7287
3 TraesCS2D01G290700 chr1D 334471109 334472905 1796 False 356.5 411 81.7010 2612 4852 2 chr1D.!!$F2 2240
4 TraesCS2D01G290700 chr1D 334460814 334462689 1875 False 316.0 425 85.1510 2612 4851 2 chr1D.!!$F1 2239
5 TraesCS2D01G290700 chr1B 450023184 450025019 1835 False 385.5 407 82.9065 2658 4851 2 chr1B.!!$F2 2193

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
510 524 0.179001 GTGTGGGTGTGTTAGGCCTT 60.179 55.000 12.58 0.0 0.00 4.35 F
512 526 0.179001 GTGGGTGTGTTAGGCCTTGT 60.179 55.000 12.58 0.0 0.00 3.16 F
524 538 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.0 0.00 3.85 F
1841 1966 0.538118 CTCCATTTGCATGTTGGGGG 59.462 55.000 9.46 0.0 0.00 5.40 F
3758 4035 1.276989 ACGGCCTCTTTTTATGTCGGA 59.723 47.619 0.00 0.0 0.00 4.55 F
3759 4036 2.289819 ACGGCCTCTTTTTATGTCGGAA 60.290 45.455 0.00 0.0 0.00 4.30 F
4556 5209 2.293122 TCCAAATGGAAGCTTGTTCACG 59.707 45.455 2.10 0.0 42.18 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1355 1373 0.172578 CGAATCTACCACGCCACTCA 59.827 55.000 0.00 0.00 0.00 3.41 R
1800 1925 1.021390 CCTGTGACTGATCGGCCAAC 61.021 60.000 2.24 0.00 0.00 3.77 R
1930 2055 3.181479 TGCCTGGTCGATGATGTAACTAC 60.181 47.826 0.00 0.00 0.00 2.73 R
3838 4115 1.192428 GACTATTCGTCACCCTGGGT 58.808 55.000 14.05 14.05 42.37 4.51 R
5326 5980 2.670934 AGCAGTGGAAAGGCAGCG 60.671 61.111 0.00 0.00 0.00 5.18 R
5338 5992 3.480470 AGTCAAGTTTATGCACAGCAGT 58.520 40.909 0.00 0.00 43.65 4.40 R
6377 7072 1.201647 GTTCCACTGCTCGTAGCTACA 59.798 52.381 23.21 9.80 42.97 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.758773 TGAATATGTGACATGCTCCTGA 57.241 40.909 8.61 0.00 0.00 3.86
47 48 3.766068 ATATGTGACATGCTCCTGAGG 57.234 47.619 8.61 0.00 0.00 3.86
147 152 5.401531 AAGCTAGGTCAACGAGTTCATAA 57.598 39.130 0.00 0.00 0.00 1.90
164 169 6.313905 AGTTCATAAAGACTAGCCAAATGTCG 59.686 38.462 0.00 0.00 36.01 4.35
247 252 4.640647 AGTTGGACCTCTTTCAAACTTGTC 59.359 41.667 0.00 0.00 0.00 3.18
318 327 4.671964 CGTTGACTTGTTGACAATGACATG 59.328 41.667 0.00 0.00 38.82 3.21
359 368 1.406180 TGAACCGAGTCGTTGACAGAA 59.594 47.619 12.31 0.00 34.60 3.02
401 411 2.799126 AGGGTTGTTGACTGTGTTGA 57.201 45.000 0.00 0.00 0.00 3.18
496 510 6.511416 TCCAAAAATAGACAAATGTGTGTGG 58.489 36.000 0.00 0.00 38.41 4.17
503 517 2.165437 GACAAATGTGTGTGGGTGTGTT 59.835 45.455 0.00 0.00 38.41 3.32
504 518 3.357203 ACAAATGTGTGTGGGTGTGTTA 58.643 40.909 0.00 0.00 36.31 2.41
506 520 2.270352 ATGTGTGTGGGTGTGTTAGG 57.730 50.000 0.00 0.00 0.00 2.69
508 522 1.149627 TGTGTGGGTGTGTTAGGCC 59.850 57.895 0.00 0.00 0.00 5.19
509 523 1.349542 TGTGTGGGTGTGTTAGGCCT 61.350 55.000 11.78 11.78 0.00 5.19
510 524 0.179001 GTGTGGGTGTGTTAGGCCTT 60.179 55.000 12.58 0.00 0.00 4.35
511 525 0.179004 TGTGGGTGTGTTAGGCCTTG 60.179 55.000 12.58 0.00 0.00 3.61
512 526 0.179001 GTGGGTGTGTTAGGCCTTGT 60.179 55.000 12.58 0.00 0.00 3.16
513 527 1.072648 GTGGGTGTGTTAGGCCTTGTA 59.927 52.381 12.58 0.00 0.00 2.41
514 528 1.072648 TGGGTGTGTTAGGCCTTGTAC 59.927 52.381 12.58 8.38 0.00 2.90
515 529 1.072648 GGGTGTGTTAGGCCTTGTACA 59.927 52.381 12.58 11.23 0.00 2.90
516 530 2.487625 GGGTGTGTTAGGCCTTGTACAA 60.488 50.000 12.58 8.28 0.00 2.41
517 531 3.418047 GGTGTGTTAGGCCTTGTACAAT 58.582 45.455 12.58 0.00 0.00 2.71
518 532 3.190535 GGTGTGTTAGGCCTTGTACAATG 59.809 47.826 12.58 7.68 0.00 2.82
519 533 3.190535 GTGTGTTAGGCCTTGTACAATGG 59.809 47.826 12.58 13.26 0.00 3.16
520 534 2.752903 GTGTTAGGCCTTGTACAATGGG 59.247 50.000 12.58 14.91 0.00 4.00
521 535 2.645297 TGTTAGGCCTTGTACAATGGGA 59.355 45.455 12.58 0.00 0.00 4.37
522 536 3.279434 GTTAGGCCTTGTACAATGGGAG 58.721 50.000 12.58 1.65 0.00 4.30
523 537 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
524 538 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
525 539 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
526 540 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
527 541 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
528 542 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
529 543 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
530 544 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
531 545 3.178046 TGTACAATGGGAGGTGCTTAGA 58.822 45.455 0.00 0.00 0.00 2.10
532 546 3.197766 TGTACAATGGGAGGTGCTTAGAG 59.802 47.826 0.00 0.00 0.00 2.43
533 547 2.551270 ACAATGGGAGGTGCTTAGAGA 58.449 47.619 0.00 0.00 0.00 3.10
534 548 2.912956 ACAATGGGAGGTGCTTAGAGAA 59.087 45.455 0.00 0.00 0.00 2.87
535 549 3.330701 ACAATGGGAGGTGCTTAGAGAAA 59.669 43.478 0.00 0.00 0.00 2.52
536 550 4.018050 ACAATGGGAGGTGCTTAGAGAAAT 60.018 41.667 0.00 0.00 0.00 2.17
537 551 5.191722 ACAATGGGAGGTGCTTAGAGAAATA 59.808 40.000 0.00 0.00 0.00 1.40
538 552 5.975988 ATGGGAGGTGCTTAGAGAAATAA 57.024 39.130 0.00 0.00 0.00 1.40
539 553 5.772393 TGGGAGGTGCTTAGAGAAATAAA 57.228 39.130 0.00 0.00 0.00 1.40
540 554 5.497474 TGGGAGGTGCTTAGAGAAATAAAC 58.503 41.667 0.00 0.00 0.00 2.01
541 555 4.882427 GGGAGGTGCTTAGAGAAATAAACC 59.118 45.833 0.00 0.00 0.00 3.27
542 556 5.497474 GGAGGTGCTTAGAGAAATAAACCA 58.503 41.667 0.00 0.00 0.00 3.67
543 557 5.586643 GGAGGTGCTTAGAGAAATAAACCAG 59.413 44.000 0.00 0.00 0.00 4.00
544 558 6.374417 AGGTGCTTAGAGAAATAAACCAGA 57.626 37.500 0.00 0.00 0.00 3.86
545 559 6.174049 AGGTGCTTAGAGAAATAAACCAGAC 58.826 40.000 0.00 0.00 0.00 3.51
546 560 6.013293 AGGTGCTTAGAGAAATAAACCAGACT 60.013 38.462 0.00 0.00 0.00 3.24
547 561 6.655425 GGTGCTTAGAGAAATAAACCAGACTT 59.345 38.462 0.00 0.00 0.00 3.01
548 562 7.175119 GGTGCTTAGAGAAATAAACCAGACTTT 59.825 37.037 0.00 0.00 0.00 2.66
549 563 8.231161 GTGCTTAGAGAAATAAACCAGACTTTC 58.769 37.037 0.00 0.00 0.00 2.62
550 564 8.157476 TGCTTAGAGAAATAAACCAGACTTTCT 58.843 33.333 0.00 0.00 39.86 2.52
551 565 9.004717 GCTTAGAGAAATAAACCAGACTTTCTT 57.995 33.333 0.00 0.00 37.90 2.52
556 570 9.613957 GAGAAATAAACCAGACTTTCTTTAAGC 57.386 33.333 0.00 0.00 37.90 3.09
557 571 9.131791 AGAAATAAACCAGACTTTCTTTAAGCA 57.868 29.630 0.00 0.00 35.06 3.91
558 572 9.914131 GAAATAAACCAGACTTTCTTTAAGCAT 57.086 29.630 0.00 0.00 37.37 3.79
559 573 9.914131 AAATAAACCAGACTTTCTTTAAGCATC 57.086 29.630 0.00 0.00 37.37 3.91
560 574 5.613358 AACCAGACTTTCTTTAAGCATCG 57.387 39.130 0.00 0.00 37.37 3.84
561 575 4.003648 ACCAGACTTTCTTTAAGCATCGG 58.996 43.478 0.00 0.00 37.37 4.18
562 576 4.003648 CCAGACTTTCTTTAAGCATCGGT 58.996 43.478 0.00 0.00 37.37 4.69
563 577 4.142816 CCAGACTTTCTTTAAGCATCGGTG 60.143 45.833 0.00 0.00 37.37 4.94
564 578 4.452455 CAGACTTTCTTTAAGCATCGGTGT 59.548 41.667 0.00 0.00 37.37 4.16
565 579 5.049405 CAGACTTTCTTTAAGCATCGGTGTT 60.049 40.000 0.00 0.00 37.37 3.32
566 580 5.531287 AGACTTTCTTTAAGCATCGGTGTTT 59.469 36.000 2.54 2.54 37.37 2.83
567 581 6.708949 AGACTTTCTTTAAGCATCGGTGTTTA 59.291 34.615 0.28 0.28 37.37 2.01
568 582 7.390718 AGACTTTCTTTAAGCATCGGTGTTTAT 59.609 33.333 5.77 0.00 37.37 1.40
569 583 7.882179 ACTTTCTTTAAGCATCGGTGTTTATT 58.118 30.769 5.77 0.00 37.37 1.40
570 584 8.357402 ACTTTCTTTAAGCATCGGTGTTTATTT 58.643 29.630 5.77 0.00 37.37 1.40
571 585 9.834628 CTTTCTTTAAGCATCGGTGTTTATTTA 57.165 29.630 5.77 0.00 32.19 1.40
577 591 6.861065 AGCATCGGTGTTTATTTATACAGG 57.139 37.500 0.00 0.00 0.00 4.00
578 592 6.588204 AGCATCGGTGTTTATTTATACAGGA 58.412 36.000 0.00 0.00 0.00 3.86
579 593 7.224297 AGCATCGGTGTTTATTTATACAGGAT 58.776 34.615 0.00 0.00 0.00 3.24
580 594 8.372459 AGCATCGGTGTTTATTTATACAGGATA 58.628 33.333 0.00 0.00 0.00 2.59
581 595 8.656849 GCATCGGTGTTTATTTATACAGGATAG 58.343 37.037 0.00 0.00 0.00 2.08
582 596 9.923143 CATCGGTGTTTATTTATACAGGATAGA 57.077 33.333 0.00 0.00 0.00 1.98
583 597 9.924650 ATCGGTGTTTATTTATACAGGATAGAC 57.075 33.333 0.00 0.00 0.00 2.59
584 598 8.077991 TCGGTGTTTATTTATACAGGATAGACG 58.922 37.037 0.00 0.00 0.00 4.18
585 599 7.148853 CGGTGTTTATTTATACAGGATAGACGC 60.149 40.741 0.00 0.00 0.00 5.19
586 600 7.871463 GGTGTTTATTTATACAGGATAGACGCT 59.129 37.037 0.00 0.00 0.00 5.07
587 601 9.257651 GTGTTTATTTATACAGGATAGACGCTT 57.742 33.333 0.00 0.00 0.00 4.68
605 619 3.067721 CTTAACTAAGCGTCTCTCCGG 57.932 52.381 0.00 0.00 0.00 5.14
606 620 2.119801 TAACTAAGCGTCTCTCCGGT 57.880 50.000 0.00 0.00 40.82 5.28
607 621 2.119801 AACTAAGCGTCTCTCCGGTA 57.880 50.000 0.00 0.00 37.62 4.02
608 622 1.666054 ACTAAGCGTCTCTCCGGTAG 58.334 55.000 0.00 0.00 37.62 3.18
609 623 1.209019 ACTAAGCGTCTCTCCGGTAGA 59.791 52.381 0.00 2.88 37.62 2.59
610 624 2.286872 CTAAGCGTCTCTCCGGTAGAA 58.713 52.381 0.00 0.00 37.62 2.10
611 625 1.542492 AAGCGTCTCTCCGGTAGAAA 58.458 50.000 0.00 0.00 37.62 2.52
612 626 1.765230 AGCGTCTCTCCGGTAGAAAT 58.235 50.000 0.00 0.00 36.69 2.17
613 627 2.928334 AGCGTCTCTCCGGTAGAAATA 58.072 47.619 0.00 0.00 36.69 1.40
614 628 2.879646 AGCGTCTCTCCGGTAGAAATAG 59.120 50.000 0.00 0.00 36.69 1.73
615 629 2.030981 GCGTCTCTCCGGTAGAAATAGG 60.031 54.545 0.00 0.00 32.46 2.57
616 630 2.030981 CGTCTCTCCGGTAGAAATAGGC 60.031 54.545 0.00 0.00 32.46 3.93
617 631 2.957006 GTCTCTCCGGTAGAAATAGGCA 59.043 50.000 0.00 0.00 32.46 4.75
618 632 2.957006 TCTCTCCGGTAGAAATAGGCAC 59.043 50.000 0.00 0.00 32.46 5.01
619 633 2.036089 CTCTCCGGTAGAAATAGGCACC 59.964 54.545 0.00 0.00 32.46 5.01
637 651 4.270178 CACCGATGCTTCAGAAAATCTC 57.730 45.455 0.08 0.00 0.00 2.75
638 652 2.932614 ACCGATGCTTCAGAAAATCTCG 59.067 45.455 0.08 0.00 0.00 4.04
639 653 2.286294 CCGATGCTTCAGAAAATCTCGG 59.714 50.000 8.08 8.08 38.51 4.63
640 654 2.932614 CGATGCTTCAGAAAATCTCGGT 59.067 45.455 0.08 0.00 0.00 4.69
641 655 3.372206 CGATGCTTCAGAAAATCTCGGTT 59.628 43.478 0.08 0.00 0.00 4.44
642 656 4.142816 CGATGCTTCAGAAAATCTCGGTTT 60.143 41.667 0.08 0.00 0.00 3.27
643 657 5.063438 CGATGCTTCAGAAAATCTCGGTTTA 59.937 40.000 0.08 0.00 0.00 2.01
644 658 6.238211 CGATGCTTCAGAAAATCTCGGTTTAT 60.238 38.462 0.08 0.00 0.00 1.40
645 659 6.817765 TGCTTCAGAAAATCTCGGTTTATT 57.182 33.333 0.00 0.00 0.00 1.40
646 660 7.214467 TGCTTCAGAAAATCTCGGTTTATTT 57.786 32.000 0.00 0.00 0.00 1.40
647 661 7.657336 TGCTTCAGAAAATCTCGGTTTATTTT 58.343 30.769 0.00 0.00 37.85 1.82
648 662 8.141268 TGCTTCAGAAAATCTCGGTTTATTTTT 58.859 29.630 0.00 0.00 35.87 1.94
667 681 3.799432 TTTTAAGCACCCCTCTAAGCA 57.201 42.857 0.00 0.00 0.00 3.91
668 682 4.316025 TTTTAAGCACCCCTCTAAGCAT 57.684 40.909 0.00 0.00 0.00 3.79
669 683 3.560636 TTAAGCACCCCTCTAAGCATC 57.439 47.619 0.00 0.00 0.00 3.91
670 684 1.589414 AAGCACCCCTCTAAGCATCT 58.411 50.000 0.00 0.00 0.00 2.90
671 685 1.127343 AGCACCCCTCTAAGCATCTC 58.873 55.000 0.00 0.00 0.00 2.75
672 686 1.127343 GCACCCCTCTAAGCATCTCT 58.873 55.000 0.00 0.00 0.00 3.10
673 687 1.069978 GCACCCCTCTAAGCATCTCTC 59.930 57.143 0.00 0.00 0.00 3.20
674 688 2.392662 CACCCCTCTAAGCATCTCTCA 58.607 52.381 0.00 0.00 0.00 3.27
675 689 2.971330 CACCCCTCTAAGCATCTCTCAT 59.029 50.000 0.00 0.00 0.00 2.90
676 690 3.390639 CACCCCTCTAAGCATCTCTCATT 59.609 47.826 0.00 0.00 0.00 2.57
677 691 3.390639 ACCCCTCTAAGCATCTCTCATTG 59.609 47.826 0.00 0.00 0.00 2.82
678 692 3.390639 CCCCTCTAAGCATCTCTCATTGT 59.609 47.826 0.00 0.00 0.00 2.71
679 693 4.590647 CCCCTCTAAGCATCTCTCATTGTA 59.409 45.833 0.00 0.00 0.00 2.41
680 694 5.510520 CCCCTCTAAGCATCTCTCATTGTAC 60.511 48.000 0.00 0.00 0.00 2.90
681 695 5.069648 CCCTCTAAGCATCTCTCATTGTACA 59.930 44.000 0.00 0.00 0.00 2.90
682 696 6.407412 CCCTCTAAGCATCTCTCATTGTACAA 60.407 42.308 11.41 11.41 0.00 2.41
683 697 7.215789 CCTCTAAGCATCTCTCATTGTACAAT 58.784 38.462 15.47 15.47 0.00 2.71
685 699 5.496133 AAGCATCTCTCATTGTACAATGC 57.504 39.130 34.12 25.37 45.77 3.56
686 700 3.881688 AGCATCTCTCATTGTACAATGCC 59.118 43.478 34.12 18.96 45.77 4.40
706 720 2.357637 CCTTATGGGCACATTAACCACG 59.642 50.000 6.84 0.00 38.53 4.94
707 721 2.045561 TATGGGCACATTAACCACGG 57.954 50.000 6.84 0.00 38.53 4.94
713 727 0.956410 CACATTAACCACGGCCGGAA 60.956 55.000 31.76 15.11 0.00 4.30
802 819 0.881118 CCTGCGTTGTTACCATTGCT 59.119 50.000 0.00 0.00 0.00 3.91
808 825 2.159627 CGTTGTTACCATTGCTGTCTCC 59.840 50.000 0.00 0.00 0.00 3.71
1047 1065 4.687215 TCCCCGTCGTCGTCGAGT 62.687 66.667 13.38 0.00 46.96 4.18
1301 1319 3.793559 AGCATGTATTCCACGGTTCTAC 58.206 45.455 0.00 0.00 0.00 2.59
1326 1344 3.678289 TGAATGTGCAGCTTCAGTGTAT 58.322 40.909 6.75 0.00 0.00 2.29
1355 1373 6.079712 AGCAGGTTTGGTCCTATTTTATCT 57.920 37.500 0.00 0.00 35.87 1.98
1364 1382 4.443034 GGTCCTATTTTATCTGAGTGGCGT 60.443 45.833 0.00 0.00 0.00 5.68
1417 1435 0.947244 AGGTTTCTGTTCTGCTTGCG 59.053 50.000 0.00 0.00 0.00 4.85
1456 1474 1.656594 TCGTGTATATGCGTGCAACAC 59.343 47.619 15.03 15.03 35.74 3.32
1585 1604 6.567687 TTCCGCTTATTTGAGAATGTGAAA 57.432 33.333 0.00 0.00 0.00 2.69
1601 1620 9.850628 AGAATGTGAAATTGATCATTACAACAG 57.149 29.630 0.00 0.00 31.87 3.16
1615 1739 8.260270 TCATTACAACAGATTCAGTCAGATTG 57.740 34.615 0.00 0.00 0.00 2.67
1650 1774 4.653341 ACAGTTCACATGGAAAATGGGAAA 59.347 37.500 4.66 0.00 42.35 3.13
1750 1875 4.073293 GCTTAAGCTAGGACAAGCCATA 57.927 45.455 20.38 0.00 43.86 2.74
1762 1887 7.961326 AGGACAAGCCATATTAGAATGTTTT 57.039 32.000 0.00 0.00 40.02 2.43
1800 1925 2.098770 GCTGAATTGCTGAAGCTTAGGG 59.901 50.000 0.00 0.00 42.66 3.53
1841 1966 0.538118 CTCCATTTGCATGTTGGGGG 59.462 55.000 9.46 0.00 0.00 5.40
1884 2009 2.095059 GTCGCCATCATTTGCTGTTCTT 60.095 45.455 0.00 0.00 0.00 2.52
1890 2015 5.574443 GCCATCATTTGCTGTTCTTTTCTAC 59.426 40.000 0.00 0.00 0.00 2.59
1930 2055 3.455327 ACATCATCGATTCACAGCAGAG 58.545 45.455 0.00 0.00 0.00 3.35
1964 2089 2.806745 CGACCAGGCACAGTAATATGGG 60.807 54.545 0.00 0.00 31.95 4.00
2086 2230 5.303165 ACTACTTGGTTAAAAGAGGGAACG 58.697 41.667 0.00 0.00 0.00 3.95
2261 2405 1.666189 GCAATAAGGCCTGACGAAGAC 59.334 52.381 5.69 0.00 0.00 3.01
2314 2458 3.698029 AAGCATTAACCATTAGCAGCG 57.302 42.857 0.00 0.00 0.00 5.18
2544 2695 2.694213 TGTCATGTATGTTGACCCACG 58.306 47.619 0.00 0.00 42.25 4.94
2571 2722 6.823689 TCAATTTATCCAGTTGCCTAGAAGTC 59.176 38.462 0.00 0.00 0.00 3.01
2665 2816 2.555325 ACATTCACAAGTGTGGCAGATG 59.445 45.455 11.38 11.95 45.65 2.90
3002 3187 1.656441 CTTGCACAGTGCCTTCCAC 59.344 57.895 23.06 0.00 44.23 4.02
3019 3204 6.389906 CCTTCCACATGTTTTTCTGAATACC 58.610 40.000 0.00 0.00 0.00 2.73
3022 3207 4.217550 CCACATGTTTTTCTGAATACCGGT 59.782 41.667 13.98 13.98 0.00 5.28
3103 3292 2.988493 TGATTTGAAGAATTTGCTGCGC 59.012 40.909 0.00 0.00 0.00 6.09
3108 3297 2.050691 GAAGAATTTGCTGCGCGAAAA 58.949 42.857 12.10 5.33 35.42 2.29
3204 3393 6.097412 GCTGAAAATAACCTGGGAATTCAGAT 59.903 38.462 22.58 0.00 42.92 2.90
3473 3748 5.848833 ATTTGCAGAAAAATGGCCAAAAA 57.151 30.435 10.96 0.09 0.00 1.94
3474 3749 4.629251 TTGCAGAAAAATGGCCAAAAAC 57.371 36.364 10.96 0.28 0.00 2.43
3476 3751 4.012374 TGCAGAAAAATGGCCAAAAACAA 58.988 34.783 10.96 0.00 0.00 2.83
3477 3752 4.096081 TGCAGAAAAATGGCCAAAAACAAG 59.904 37.500 10.96 0.00 0.00 3.16
3478 3753 4.096231 GCAGAAAAATGGCCAAAAACAAGT 59.904 37.500 10.96 0.00 0.00 3.16
3479 3754 5.571277 CAGAAAAATGGCCAAAAACAAGTG 58.429 37.500 10.96 0.00 0.00 3.16
3485 3760 6.472686 AATGGCCAAAAACAAGTGTTACTA 57.527 33.333 10.96 0.00 37.25 1.82
3486 3761 6.664428 ATGGCCAAAAACAAGTGTTACTAT 57.336 33.333 10.96 0.00 37.25 2.12
3488 3763 6.508777 TGGCCAAAAACAAGTGTTACTATTC 58.491 36.000 0.61 0.00 37.25 1.75
3489 3764 6.096987 TGGCCAAAAACAAGTGTTACTATTCA 59.903 34.615 0.61 0.00 37.25 2.57
3497 3772 8.498054 AACAAGTGTTACTATTCATCATCCAG 57.502 34.615 0.00 0.00 36.32 3.86
3499 3774 6.179906 AGTGTTACTATTCATCATCCAGGG 57.820 41.667 0.00 0.00 0.00 4.45
3500 3775 5.667626 AGTGTTACTATTCATCATCCAGGGT 59.332 40.000 0.00 0.00 0.00 4.34
3501 3776 5.760253 GTGTTACTATTCATCATCCAGGGTG 59.240 44.000 0.00 0.00 0.00 4.61
3502 3777 3.498774 ACTATTCATCATCCAGGGTGC 57.501 47.619 0.00 0.00 0.00 5.01
3504 3779 2.359981 ATTCATCATCCAGGGTGCAG 57.640 50.000 0.00 0.00 0.00 4.41
3510 3785 3.565764 TCATCCAGGGTGCAGAATAAG 57.434 47.619 0.00 0.00 0.00 1.73
3511 3786 2.846206 TCATCCAGGGTGCAGAATAAGT 59.154 45.455 0.00 0.00 0.00 2.24
3512 3787 3.266772 TCATCCAGGGTGCAGAATAAGTT 59.733 43.478 0.00 0.00 0.00 2.66
3513 3788 4.473196 TCATCCAGGGTGCAGAATAAGTTA 59.527 41.667 0.00 0.00 0.00 2.24
3514 3789 5.132648 TCATCCAGGGTGCAGAATAAGTTAT 59.867 40.000 0.00 0.00 0.00 1.89
3515 3790 5.450818 TCCAGGGTGCAGAATAAGTTATT 57.549 39.130 7.87 7.87 0.00 1.40
3516 3791 5.437060 TCCAGGGTGCAGAATAAGTTATTC 58.563 41.667 22.80 22.80 43.77 1.75
3527 3802 6.846325 GAATAAGTTATTCTTCACCCGAGG 57.154 41.667 22.93 0.00 41.00 4.63
3528 3803 5.952347 ATAAGTTATTCTTCACCCGAGGT 57.048 39.130 0.00 0.00 37.56 3.85
3529 3804 7.427989 AATAAGTTATTCTTCACCCGAGGTA 57.572 36.000 2.10 0.00 37.56 3.08
3531 3806 5.952347 AGTTATTCTTCACCCGAGGTAAT 57.048 39.130 0.00 0.00 32.11 1.89
3532 3807 5.915175 AGTTATTCTTCACCCGAGGTAATC 58.085 41.667 0.00 0.00 32.11 1.75
3533 3808 5.661759 AGTTATTCTTCACCCGAGGTAATCT 59.338 40.000 0.00 0.00 32.11 2.40
3534 3809 6.156429 AGTTATTCTTCACCCGAGGTAATCTT 59.844 38.462 0.00 0.00 32.11 2.40
3535 3810 7.343833 AGTTATTCTTCACCCGAGGTAATCTTA 59.656 37.037 0.00 0.00 32.11 2.10
3536 3811 4.996788 TCTTCACCCGAGGTAATCTTAC 57.003 45.455 0.00 0.00 32.11 2.34
3537 3812 3.379372 TCTTCACCCGAGGTAATCTTACG 59.621 47.826 0.00 0.00 32.11 3.18
3538 3813 3.003394 TCACCCGAGGTAATCTTACGA 57.997 47.619 0.00 0.00 32.11 3.43
3539 3814 3.559069 TCACCCGAGGTAATCTTACGAT 58.441 45.455 0.00 0.00 32.11 3.73
3540 3815 3.567164 TCACCCGAGGTAATCTTACGATC 59.433 47.826 0.00 0.00 32.11 3.69
3543 3818 5.182570 CACCCGAGGTAATCTTACGATCATA 59.817 44.000 0.00 0.00 32.11 2.15
3544 3819 5.950549 ACCCGAGGTAATCTTACGATCATAT 59.049 40.000 0.00 0.00 32.11 1.78
3545 3820 6.095160 ACCCGAGGTAATCTTACGATCATATC 59.905 42.308 0.00 0.00 32.11 1.63
3546 3821 6.095021 CCCGAGGTAATCTTACGATCATATCA 59.905 42.308 0.00 0.00 34.50 2.15
3547 3822 7.201830 CCCGAGGTAATCTTACGATCATATCAT 60.202 40.741 0.00 0.00 34.50 2.45
3548 3823 8.837389 CCGAGGTAATCTTACGATCATATCATA 58.163 37.037 0.00 0.00 34.50 2.15
3583 3858 9.620660 ACGTTTGGAATTCAAATAGTTACATTC 57.379 29.630 7.93 0.00 45.79 2.67
3584 3859 9.072294 CGTTTGGAATTCAAATAGTTACATTCC 57.928 33.333 7.93 14.27 45.79 3.01
3599 3874 8.873215 AGTTACATTCCTATTGATTCACTACG 57.127 34.615 0.00 0.00 0.00 3.51
3600 3875 8.475639 AGTTACATTCCTATTGATTCACTACGT 58.524 33.333 0.00 0.00 0.00 3.57
3601 3876 9.740239 GTTACATTCCTATTGATTCACTACGTA 57.260 33.333 0.00 0.00 0.00 3.57
3604 3879 9.661563 ACATTCCTATTGATTCACTACGTAAAA 57.338 29.630 0.00 0.00 0.00 1.52
3708 3985 9.737427 ACGTTTGTAATTTCACATAACATGAAA 57.263 25.926 0.00 2.89 46.96 2.69
3743 4020 9.831737 ACGACGATTATATATATTATTACGGCC 57.168 33.333 0.00 0.00 0.00 6.13
3756 4033 6.592798 TTATTACGGCCTCTTTTTATGTCG 57.407 37.500 0.00 0.00 0.00 4.35
3757 4034 1.734163 ACGGCCTCTTTTTATGTCGG 58.266 50.000 0.00 0.00 0.00 4.79
3758 4035 1.276989 ACGGCCTCTTTTTATGTCGGA 59.723 47.619 0.00 0.00 0.00 4.55
3759 4036 2.289819 ACGGCCTCTTTTTATGTCGGAA 60.290 45.455 0.00 0.00 0.00 4.30
3760 4037 2.745281 CGGCCTCTTTTTATGTCGGAAA 59.255 45.455 0.00 0.00 0.00 3.13
3761 4038 3.377172 CGGCCTCTTTTTATGTCGGAAAT 59.623 43.478 0.00 0.00 0.00 2.17
3762 4039 4.573201 CGGCCTCTTTTTATGTCGGAAATA 59.427 41.667 0.00 0.00 0.00 1.40
3763 4040 5.065474 CGGCCTCTTTTTATGTCGGAAATAA 59.935 40.000 0.00 0.00 0.00 1.40
3764 4041 6.495706 GGCCTCTTTTTATGTCGGAAATAAG 58.504 40.000 0.00 0.00 0.00 1.73
3765 4042 6.317893 GGCCTCTTTTTATGTCGGAAATAAGA 59.682 38.462 0.00 0.00 0.00 2.10
3766 4043 7.187480 GCCTCTTTTTATGTCGGAAATAAGAC 58.813 38.462 1.16 0.00 37.85 3.01
3776 4053 6.879962 TGTCGGAAATAAGACAAAACTTACG 58.120 36.000 0.00 0.00 43.47 3.18
3777 4054 6.073657 TGTCGGAAATAAGACAAAACTTACGG 60.074 38.462 0.00 0.00 43.47 4.02
3778 4055 6.146021 GTCGGAAATAAGACAAAACTTACGGA 59.854 38.462 0.00 0.00 35.60 4.69
3779 4056 6.705381 TCGGAAATAAGACAAAACTTACGGAA 59.295 34.615 0.00 0.00 35.60 4.30
3780 4057 6.793680 CGGAAATAAGACAAAACTTACGGAAC 59.206 38.462 0.00 0.00 35.60 3.62
3804 4081 4.799564 AAAATTACGGTGCATTGATGGT 57.200 36.364 0.00 0.00 0.00 3.55
3805 4082 5.906113 AAAATTACGGTGCATTGATGGTA 57.094 34.783 0.00 0.00 0.00 3.25
3806 4083 5.906113 AAATTACGGTGCATTGATGGTAA 57.094 34.783 0.00 0.00 0.00 2.85
3807 4084 5.906113 AATTACGGTGCATTGATGGTAAA 57.094 34.783 0.00 0.00 0.00 2.01
3808 4085 5.906113 ATTACGGTGCATTGATGGTAAAA 57.094 34.783 0.00 0.00 0.00 1.52
3809 4086 5.906113 TTACGGTGCATTGATGGTAAAAT 57.094 34.783 0.00 0.00 0.00 1.82
3810 4087 7.575414 ATTACGGTGCATTGATGGTAAAATA 57.425 32.000 0.00 0.00 0.00 1.40
3811 4088 5.499139 ACGGTGCATTGATGGTAAAATAG 57.501 39.130 0.00 0.00 0.00 1.73
3812 4089 5.189928 ACGGTGCATTGATGGTAAAATAGA 58.810 37.500 0.00 0.00 0.00 1.98
3813 4090 5.296780 ACGGTGCATTGATGGTAAAATAGAG 59.703 40.000 0.00 0.00 0.00 2.43
3814 4091 5.277974 CGGTGCATTGATGGTAAAATAGAGG 60.278 44.000 0.00 0.00 0.00 3.69
3815 4092 5.010012 GGTGCATTGATGGTAAAATAGAGGG 59.990 44.000 0.00 0.00 0.00 4.30
3816 4093 5.010012 GTGCATTGATGGTAAAATAGAGGGG 59.990 44.000 0.00 0.00 0.00 4.79
3817 4094 4.524328 GCATTGATGGTAAAATAGAGGGGG 59.476 45.833 0.00 0.00 0.00 5.40
3836 4113 5.648330 GGGGGTGAAGAATAACTATTCCT 57.352 43.478 5.95 0.00 42.29 3.36
3837 4114 5.622180 GGGGGTGAAGAATAACTATTCCTC 58.378 45.833 5.95 4.07 42.29 3.71
3838 4115 5.132144 GGGGGTGAAGAATAACTATTCCTCA 59.868 44.000 6.65 6.65 42.29 3.86
3842 4119 6.884472 TGAAGAATAACTATTCCTCACCCA 57.116 37.500 6.65 0.00 42.29 4.51
3843 4120 6.889198 TGAAGAATAACTATTCCTCACCCAG 58.111 40.000 6.65 0.00 42.29 4.45
3844 4121 5.896073 AGAATAACTATTCCTCACCCAGG 57.104 43.478 5.95 0.00 42.29 4.45
3845 4122 4.660771 AGAATAACTATTCCTCACCCAGGG 59.339 45.833 2.85 2.85 43.67 4.45
3846 4123 2.361085 AACTATTCCTCACCCAGGGT 57.639 50.000 4.76 4.76 43.67 4.34
3847 4124 5.687706 GAATAACTATTCCTCACCCAGGGTG 60.688 48.000 31.06 31.06 43.50 4.61
3848 4125 7.827072 GAATAACTATTCCTCACCCAGGGTGA 61.827 46.154 35.32 35.32 45.54 4.02
3849 4126 9.736671 GAATAACTATTCCTCACCCAGGGTGAC 62.737 48.148 34.62 17.53 44.45 3.67
3856 4133 3.393854 ACCCAGGGTGACGAATAGT 57.606 52.632 11.70 0.00 32.98 2.12
4079 4357 6.862090 CCTTAGTAAGTCATATGTAACCGAGC 59.138 42.308 9.05 0.00 0.00 5.03
4343 4628 4.240096 CAGTTTCTAAGGCCATTGCAAAG 58.760 43.478 5.01 0.00 40.13 2.77
4467 4942 2.469826 TGCAGACTTCTGTTGTACACG 58.530 47.619 8.04 0.00 45.45 4.49
4556 5209 2.293122 TCCAAATGGAAGCTTGTTCACG 59.707 45.455 2.10 0.00 42.18 4.35
5027 5681 9.927668 CTGTGGTTTTGATATTTCCTGTTTTAT 57.072 29.630 0.00 0.00 0.00 1.40
5282 5936 7.507304 CGTATACACACGATTTTCTTTGACTT 58.493 34.615 3.32 0.00 44.69 3.01
5326 5980 8.716909 CATGTTTTTACCACAAATTATTGTCCC 58.283 33.333 0.00 0.00 46.78 4.46
5338 5992 2.424842 ATTGTCCCGCTGCCTTTCCA 62.425 55.000 0.00 0.00 0.00 3.53
5510 6164 1.730612 GCGTAGGCCAACAGAAGTTAC 59.269 52.381 5.01 0.00 35.85 2.50
5705 6400 7.488322 AGTTCTGAATCACTATGAACTAGAGC 58.512 38.462 12.13 0.00 43.45 4.09
6014 6709 2.031157 CCGTTGGGCAGTTAAGAACAAG 60.031 50.000 0.00 0.00 0.00 3.16
6181 6876 6.808704 GGAAAGGTTAAAGAAGATGATGTTGC 59.191 38.462 0.00 0.00 0.00 4.17
6188 6883 0.815734 AAGATGATGTTGCTGCTGCC 59.184 50.000 13.47 0.00 38.71 4.85
6257 6952 1.364626 CTGCCACTGATCCAGCGAAC 61.365 60.000 0.00 0.00 34.37 3.95
6261 6956 1.428448 CACTGATCCAGCGAACGAAA 58.572 50.000 0.00 0.00 34.37 3.46
6322 7017 7.491372 TGATTCAACGAACTCATAAGATACACC 59.509 37.037 0.00 0.00 0.00 4.16
6427 7122 5.876460 GCTCAGCATTTTTGGATATGGTTTT 59.124 36.000 0.00 0.00 30.62 2.43
6446 7141 6.165577 GGTTTTGCTGATCCATTGTGTTAAT 58.834 36.000 0.00 0.00 0.00 1.40
6590 7301 8.345565 CCAATAGGTGTCTTAAAATAGTGCATC 58.654 37.037 0.00 0.00 0.00 3.91
6627 7338 2.875672 GCCCTAGCCGCATCATAAATGA 60.876 50.000 0.00 0.00 41.70 2.57
6718 7433 6.486248 ACAATAATTTCATCAATCCACGACG 58.514 36.000 0.00 0.00 0.00 5.12
6785 7501 9.593134 TCAACACAAATAAACAAAGTTTAGCAT 57.407 25.926 8.15 0.00 0.00 3.79
6809 7525 9.650371 CATACAATACAATAAAGTTCATCCACG 57.350 33.333 0.00 0.00 0.00 4.94
6814 7530 9.607988 AATACAATAAAGTTCATCCACGATACA 57.392 29.630 0.00 0.00 0.00 2.29
6815 7531 7.915293 ACAATAAAGTTCATCCACGATACAA 57.085 32.000 0.00 0.00 0.00 2.41
6816 7532 8.330466 ACAATAAAGTTCATCCACGATACAAA 57.670 30.769 0.00 0.00 0.00 2.83
6844 7561 6.739331 AACATAGAGATGAAACTAGAGGGG 57.261 41.667 0.00 0.00 36.48 4.79
6850 7567 3.910627 AGATGAAACTAGAGGGGTGTTGT 59.089 43.478 0.00 0.00 0.00 3.32
6855 7575 0.322546 CTAGAGGGGTGTTGTTGCCC 60.323 60.000 0.00 0.00 44.09 5.36
6877 7599 5.009631 CCACCACTCCATGACATCTTTTTA 58.990 41.667 0.00 0.00 0.00 1.52
6946 7668 8.610248 TGAATAAAGTGTTGAATTCGGTCTTA 57.390 30.769 0.04 0.00 32.23 2.10
6953 7675 6.014840 AGTGTTGAATTCGGTCTTACCTTCTA 60.015 38.462 0.04 0.00 35.66 2.10
6963 7687 4.502604 GGTCTTACCTTCTAGTGTTGCACA 60.503 45.833 2.01 0.00 34.22 4.57
6989 7713 2.050144 TCCCATGAGGTGATAGAAGGC 58.950 52.381 0.00 0.00 36.75 4.35
6990 7714 1.770658 CCCATGAGGTGATAGAAGGCA 59.229 52.381 0.00 0.00 0.00 4.75
7020 7745 4.891627 TTTTGTCAATGCTCGTTCTCAA 57.108 36.364 0.00 0.00 0.00 3.02
7059 7784 6.788243 TGCAAGCTGTAATGATGTATCAAAG 58.212 36.000 0.00 0.00 40.69 2.77
7070 7938 5.253330 TGATGTATCAAAGGTTCCCTTGAC 58.747 41.667 5.19 0.00 43.92 3.18
7100 7968 4.189231 CCTAACCGGTCCTCAAACAATAG 58.811 47.826 8.04 1.09 0.00 1.73
7101 7969 2.109425 ACCGGTCCTCAAACAATAGC 57.891 50.000 0.00 0.00 0.00 2.97
7110 8412 6.405842 GGTCCTCAAACAATAGCAAATTAGGG 60.406 42.308 0.00 0.00 0.00 3.53
7150 8452 1.153745 CTGCGCGTCTTTCCTAGCT 60.154 57.895 8.43 0.00 0.00 3.32
7206 8508 1.949799 ACATTGGGGGCTTGCAATTA 58.050 45.000 0.00 0.00 0.00 1.40
7306 8608 1.561643 AGCAAAGAGAGGTGATCGGA 58.438 50.000 0.00 0.00 0.00 4.55
7308 8610 1.933247 CAAAGAGAGGTGATCGGAGC 58.067 55.000 0.00 0.00 0.00 4.70
7310 8612 0.820871 AAGAGAGGTGATCGGAGCAC 59.179 55.000 17.59 17.59 35.56 4.40
7311 8613 0.323816 AGAGAGGTGATCGGAGCACA 60.324 55.000 25.63 3.71 37.99 4.57
7312 8614 0.749649 GAGAGGTGATCGGAGCACAT 59.250 55.000 25.63 20.35 37.99 3.21
7313 8615 1.137872 GAGAGGTGATCGGAGCACATT 59.862 52.381 25.63 14.35 37.99 2.71
7314 8616 1.134580 AGAGGTGATCGGAGCACATTG 60.135 52.381 25.63 0.00 37.99 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.300411 TCAGGAGCATGTCACATATTCAT 57.700 39.130 0.00 0.00 0.00 2.57
45 46 4.015730 AGCATCCTCTCCTATATAAGGCCT 60.016 45.833 0.00 0.00 46.10 5.19
47 48 5.948742 AAGCATCCTCTCCTATATAAGGC 57.051 43.478 0.00 0.00 46.10 4.35
147 152 1.679032 GCCCGACATTTGGCTAGTCTT 60.679 52.381 0.00 0.00 44.46 3.01
164 169 2.954318 GCACCATATATCATGGATGCCC 59.046 50.000 10.19 0.00 41.64 5.36
318 327 4.456911 TCAGTCAATGAAAGTTCATCCAGC 59.543 41.667 6.99 0.00 46.60 4.85
343 352 1.726791 CCAATTCTGTCAACGACTCGG 59.273 52.381 2.98 0.00 33.15 4.63
381 390 3.080300 TCAACACAGTCAACAACCCTT 57.920 42.857 0.00 0.00 0.00 3.95
383 392 3.442273 TCTTTCAACACAGTCAACAACCC 59.558 43.478 0.00 0.00 0.00 4.11
473 487 5.695816 CCCACACACATTTGTCTATTTTTGG 59.304 40.000 0.00 0.00 31.66 3.28
474 488 6.200665 CACCCACACACATTTGTCTATTTTTG 59.799 38.462 0.00 0.00 31.66 2.44
496 510 2.554370 TGTACAAGGCCTAACACACC 57.446 50.000 5.16 0.00 0.00 4.16
503 517 1.843851 CCTCCCATTGTACAAGGCCTA 59.156 52.381 14.66 1.57 0.00 3.93
504 518 0.625849 CCTCCCATTGTACAAGGCCT 59.374 55.000 14.66 0.00 0.00 5.19
506 520 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
508 522 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
509 523 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
510 524 3.178046 TCTAAGCACCTCCCATTGTACA 58.822 45.455 0.00 0.00 0.00 2.90
511 525 3.451178 TCTCTAAGCACCTCCCATTGTAC 59.549 47.826 0.00 0.00 0.00 2.90
512 526 3.719871 TCTCTAAGCACCTCCCATTGTA 58.280 45.455 0.00 0.00 0.00 2.41
513 527 2.551270 TCTCTAAGCACCTCCCATTGT 58.449 47.619 0.00 0.00 0.00 2.71
514 528 3.634397 TTCTCTAAGCACCTCCCATTG 57.366 47.619 0.00 0.00 0.00 2.82
515 529 4.870021 ATTTCTCTAAGCACCTCCCATT 57.130 40.909 0.00 0.00 0.00 3.16
516 530 5.975988 TTATTTCTCTAAGCACCTCCCAT 57.024 39.130 0.00 0.00 0.00 4.00
517 531 5.497474 GTTTATTTCTCTAAGCACCTCCCA 58.503 41.667 0.00 0.00 0.00 4.37
518 532 4.882427 GGTTTATTTCTCTAAGCACCTCCC 59.118 45.833 0.00 0.00 0.00 4.30
519 533 5.497474 TGGTTTATTTCTCTAAGCACCTCC 58.503 41.667 0.00 0.00 0.00 4.30
520 534 6.314152 GTCTGGTTTATTTCTCTAAGCACCTC 59.686 42.308 0.00 0.00 0.00 3.85
521 535 6.013293 AGTCTGGTTTATTTCTCTAAGCACCT 60.013 38.462 0.00 0.00 0.00 4.00
522 536 6.174049 AGTCTGGTTTATTTCTCTAAGCACC 58.826 40.000 0.00 0.00 0.00 5.01
523 537 7.674471 AAGTCTGGTTTATTTCTCTAAGCAC 57.326 36.000 0.00 0.00 0.00 4.40
524 538 8.157476 AGAAAGTCTGGTTTATTTCTCTAAGCA 58.843 33.333 0.00 0.00 37.41 3.91
525 539 8.554835 AGAAAGTCTGGTTTATTTCTCTAAGC 57.445 34.615 0.00 0.00 37.41 3.09
530 544 9.613957 GCTTAAAGAAAGTCTGGTTTATTTCTC 57.386 33.333 0.00 0.00 40.23 2.87
531 545 9.131791 TGCTTAAAGAAAGTCTGGTTTATTTCT 57.868 29.630 0.00 0.00 42.30 2.52
532 546 9.914131 ATGCTTAAAGAAAGTCTGGTTTATTTC 57.086 29.630 0.00 0.00 37.53 2.17
533 547 9.914131 GATGCTTAAAGAAAGTCTGGTTTATTT 57.086 29.630 0.00 0.00 37.53 1.40
534 548 8.237267 CGATGCTTAAAGAAAGTCTGGTTTATT 58.763 33.333 0.00 0.00 37.53 1.40
535 549 7.148239 CCGATGCTTAAAGAAAGTCTGGTTTAT 60.148 37.037 0.00 0.00 37.53 1.40
536 550 6.148811 CCGATGCTTAAAGAAAGTCTGGTTTA 59.851 38.462 0.00 0.00 37.53 2.01
537 551 5.048713 CCGATGCTTAAAGAAAGTCTGGTTT 60.049 40.000 0.00 0.00 37.53 3.27
538 552 4.455877 CCGATGCTTAAAGAAAGTCTGGTT 59.544 41.667 0.00 0.00 37.53 3.67
539 553 4.003648 CCGATGCTTAAAGAAAGTCTGGT 58.996 43.478 0.00 0.00 37.53 4.00
540 554 4.003648 ACCGATGCTTAAAGAAAGTCTGG 58.996 43.478 0.00 0.00 37.53 3.86
541 555 4.452455 ACACCGATGCTTAAAGAAAGTCTG 59.548 41.667 0.00 0.00 37.53 3.51
542 556 4.642429 ACACCGATGCTTAAAGAAAGTCT 58.358 39.130 0.00 0.00 37.53 3.24
543 557 5.358298 AACACCGATGCTTAAAGAAAGTC 57.642 39.130 0.00 0.00 37.53 3.01
544 558 5.767816 AAACACCGATGCTTAAAGAAAGT 57.232 34.783 0.00 0.00 37.53 2.66
545 559 8.742554 AAATAAACACCGATGCTTAAAGAAAG 57.257 30.769 0.00 0.00 38.32 2.62
551 565 8.832521 CCTGTATAAATAAACACCGATGCTTAA 58.167 33.333 0.00 0.00 0.00 1.85
552 566 8.205512 TCCTGTATAAATAAACACCGATGCTTA 58.794 33.333 0.00 0.00 0.00 3.09
553 567 7.051623 TCCTGTATAAATAAACACCGATGCTT 58.948 34.615 0.00 0.00 0.00 3.91
554 568 6.588204 TCCTGTATAAATAAACACCGATGCT 58.412 36.000 0.00 0.00 0.00 3.79
555 569 6.854496 TCCTGTATAAATAAACACCGATGC 57.146 37.500 0.00 0.00 0.00 3.91
556 570 9.923143 TCTATCCTGTATAAATAAACACCGATG 57.077 33.333 0.00 0.00 0.00 3.84
557 571 9.924650 GTCTATCCTGTATAAATAAACACCGAT 57.075 33.333 0.00 0.00 0.00 4.18
558 572 8.077991 CGTCTATCCTGTATAAATAAACACCGA 58.922 37.037 0.00 0.00 0.00 4.69
559 573 7.148853 GCGTCTATCCTGTATAAATAAACACCG 60.149 40.741 0.00 0.00 0.00 4.94
560 574 7.871463 AGCGTCTATCCTGTATAAATAAACACC 59.129 37.037 0.00 0.00 0.00 4.16
561 575 8.813643 AGCGTCTATCCTGTATAAATAAACAC 57.186 34.615 0.00 0.00 0.00 3.32
585 599 2.422832 ACCGGAGAGACGCTTAGTTAAG 59.577 50.000 9.46 0.00 36.40 1.85
586 600 2.440409 ACCGGAGAGACGCTTAGTTAA 58.560 47.619 9.46 0.00 0.00 2.01
587 601 2.119801 ACCGGAGAGACGCTTAGTTA 57.880 50.000 9.46 0.00 0.00 2.24
588 602 2.015587 CTACCGGAGAGACGCTTAGTT 58.984 52.381 9.46 0.00 0.00 2.24
589 603 1.209019 TCTACCGGAGAGACGCTTAGT 59.791 52.381 9.46 0.00 0.00 2.24
590 604 1.950828 TCTACCGGAGAGACGCTTAG 58.049 55.000 9.46 0.00 0.00 2.18
591 605 2.408271 TTCTACCGGAGAGACGCTTA 57.592 50.000 9.46 0.00 34.93 3.09
592 606 1.542492 TTTCTACCGGAGAGACGCTT 58.458 50.000 9.46 0.00 34.93 4.68
593 607 1.765230 ATTTCTACCGGAGAGACGCT 58.235 50.000 9.46 0.00 34.93 5.07
594 608 2.030981 CCTATTTCTACCGGAGAGACGC 60.031 54.545 9.46 0.00 34.93 5.19
595 609 2.030981 GCCTATTTCTACCGGAGAGACG 60.031 54.545 9.46 0.00 34.93 4.18
596 610 2.957006 TGCCTATTTCTACCGGAGAGAC 59.043 50.000 9.46 0.00 34.93 3.36
597 611 2.957006 GTGCCTATTTCTACCGGAGAGA 59.043 50.000 9.46 7.73 34.93 3.10
598 612 2.036089 GGTGCCTATTTCTACCGGAGAG 59.964 54.545 9.46 4.89 34.93 3.20
599 613 2.037144 GGTGCCTATTTCTACCGGAGA 58.963 52.381 9.46 3.59 0.00 3.71
600 614 2.528041 GGTGCCTATTTCTACCGGAG 57.472 55.000 9.46 0.60 0.00 4.63
604 618 2.143925 GCATCGGTGCCTATTTCTACC 58.856 52.381 10.29 0.00 45.76 3.18
616 630 3.242220 CGAGATTTTCTGAAGCATCGGTG 60.242 47.826 0.00 0.00 33.40 4.94
617 631 2.932614 CGAGATTTTCTGAAGCATCGGT 59.067 45.455 0.00 0.00 33.40 4.69
618 632 2.286294 CCGAGATTTTCTGAAGCATCGG 59.714 50.000 15.80 15.80 42.00 4.18
619 633 2.932614 ACCGAGATTTTCTGAAGCATCG 59.067 45.455 8.47 8.47 0.00 3.84
620 634 4.954092 AACCGAGATTTTCTGAAGCATC 57.046 40.909 4.33 4.33 0.00 3.91
621 635 7.396540 AATAAACCGAGATTTTCTGAAGCAT 57.603 32.000 0.00 0.00 0.00 3.79
622 636 6.817765 AATAAACCGAGATTTTCTGAAGCA 57.182 33.333 0.00 0.00 0.00 3.91
623 637 8.520835 AAAAATAAACCGAGATTTTCTGAAGC 57.479 30.769 0.00 0.00 34.86 3.86
646 660 4.107127 TGCTTAGAGGGGTGCTTAAAAA 57.893 40.909 0.00 0.00 0.00 1.94
647 661 3.799432 TGCTTAGAGGGGTGCTTAAAA 57.201 42.857 0.00 0.00 0.00 1.52
648 662 3.523564 AGATGCTTAGAGGGGTGCTTAAA 59.476 43.478 0.00 0.00 0.00 1.52
649 663 3.115390 AGATGCTTAGAGGGGTGCTTAA 58.885 45.455 0.00 0.00 0.00 1.85
650 664 2.700897 GAGATGCTTAGAGGGGTGCTTA 59.299 50.000 0.00 0.00 0.00 3.09
651 665 1.488393 GAGATGCTTAGAGGGGTGCTT 59.512 52.381 0.00 0.00 0.00 3.91
652 666 1.127343 GAGATGCTTAGAGGGGTGCT 58.873 55.000 0.00 0.00 0.00 4.40
653 667 1.069978 GAGAGATGCTTAGAGGGGTGC 59.930 57.143 0.00 0.00 0.00 5.01
654 668 2.392662 TGAGAGATGCTTAGAGGGGTG 58.607 52.381 0.00 0.00 0.00 4.61
655 669 2.856760 TGAGAGATGCTTAGAGGGGT 57.143 50.000 0.00 0.00 0.00 4.95
656 670 3.390639 ACAATGAGAGATGCTTAGAGGGG 59.609 47.826 0.00 0.00 0.00 4.79
657 671 4.686191 ACAATGAGAGATGCTTAGAGGG 57.314 45.455 0.00 0.00 0.00 4.30
658 672 6.154203 TGTACAATGAGAGATGCTTAGAGG 57.846 41.667 0.00 0.00 0.00 3.69
685 699 2.357637 CGTGGTTAATGTGCCCATAAGG 59.642 50.000 0.00 0.00 39.47 2.69
686 700 2.357637 CCGTGGTTAATGTGCCCATAAG 59.642 50.000 0.00 0.00 0.00 1.73
706 720 2.746277 AGCGTTGTGATTCCGGCC 60.746 61.111 0.00 0.00 0.00 6.13
707 721 2.480555 CAGCGTTGTGATTCCGGC 59.519 61.111 0.00 0.00 0.00 6.13
713 727 2.945984 CAACGGCAGCGTTGTGAT 59.054 55.556 16.95 0.00 42.77 3.06
802 819 1.273324 GGGGAGAAAGGAGAGGAGACA 60.273 57.143 0.00 0.00 0.00 3.41
808 825 1.557371 GAAGGTGGGGAGAAAGGAGAG 59.443 57.143 0.00 0.00 0.00 3.20
861 878 4.115199 GTGGGAAGGATGGCGGCT 62.115 66.667 11.43 0.00 0.00 5.52
885 903 3.695606 GGCAGCAGGACGGAGACA 61.696 66.667 0.00 0.00 0.00 3.41
953 971 2.699954 ACAACTCACGGATGGATCAAC 58.300 47.619 0.00 0.00 0.00 3.18
957 975 1.812571 GCAAACAACTCACGGATGGAT 59.187 47.619 0.00 0.00 0.00 3.41
991 1009 3.365868 GCTGCTAGACTCATAGATGACGG 60.366 52.174 0.00 0.00 32.50 4.79
1301 1319 2.292569 ACTGAAGCTGCACATTCAACAG 59.707 45.455 1.02 0.00 35.14 3.16
1326 1344 3.806949 AGGACCAAACCTGCTAATGAA 57.193 42.857 0.00 0.00 39.01 2.57
1355 1373 0.172578 CGAATCTACCACGCCACTCA 59.827 55.000 0.00 0.00 0.00 3.41
1364 1382 4.218635 GCATCTATCTGACCGAATCTACCA 59.781 45.833 0.00 0.00 0.00 3.25
1417 1435 1.929836 GAATCCAGCTGTCACGACATC 59.070 52.381 13.81 0.00 41.01 3.06
1456 1474 5.675538 AGAAAAATCTCCTATCCCGTCAAG 58.324 41.667 0.00 0.00 0.00 3.02
1585 1604 8.797350 TGACTGAATCTGTTGTAATGATCAAT 57.203 30.769 0.00 0.00 0.00 2.57
1601 1620 3.063725 GCACAGAGCAATCTGACTGAATC 59.936 47.826 12.00 0.00 44.79 2.52
1650 1774 5.308825 GCATACCACAGCAGAATAGGTAAT 58.691 41.667 0.00 0.00 38.25 1.89
1800 1925 1.021390 CCTGTGACTGATCGGCCAAC 61.021 60.000 2.24 0.00 0.00 3.77
1884 2009 6.065976 ACACATTCTGGATGGATGTAGAAA 57.934 37.500 0.20 0.00 40.21 2.52
1890 2015 5.824097 TGATGTAACACATTCTGGATGGATG 59.176 40.000 0.20 0.00 39.27 3.51
1930 2055 3.181479 TGCCTGGTCGATGATGTAACTAC 60.181 47.826 0.00 0.00 0.00 2.73
2086 2230 5.649831 GCATTATCCCATATTCTTCCCTCAC 59.350 44.000 0.00 0.00 0.00 3.51
2261 2405 5.431765 AGACTAACAAGCATACCAATGGAG 58.568 41.667 6.16 0.00 33.38 3.86
2314 2458 7.590279 TGCTAAATTACTTTACAGAACCTTGC 58.410 34.615 0.00 0.00 0.00 4.01
2325 2469 5.885912 CCCCTTGAGCTGCTAAATTACTTTA 59.114 40.000 0.15 0.00 0.00 1.85
2665 2816 9.897744 CCACAACATATATCCAATAATTCACAC 57.102 33.333 0.00 0.00 0.00 3.82
3002 3187 4.082787 AGCACCGGTATTCAGAAAAACATG 60.083 41.667 6.87 0.00 0.00 3.21
3019 3204 3.674997 ACCCTGCATATAAATAGCACCG 58.325 45.455 0.00 0.00 34.13 4.94
3022 3207 5.769662 CCTCAAACCCTGCATATAAATAGCA 59.230 40.000 0.00 0.00 36.72 3.49
3204 3393 4.099266 ACAACTTACCTTTTGATGCAGCAA 59.901 37.500 14.49 14.49 0.00 3.91
3400 3675 7.012421 TGTTGGTTTTTGCAAACTTAAACTGTT 59.988 29.630 12.39 0.00 41.92 3.16
3473 3748 7.050377 CCTGGATGATGAATAGTAACACTTGT 58.950 38.462 0.00 0.00 0.00 3.16
3474 3749 6.484643 CCCTGGATGATGAATAGTAACACTTG 59.515 42.308 0.00 0.00 0.00 3.16
3476 3751 5.667626 ACCCTGGATGATGAATAGTAACACT 59.332 40.000 0.00 0.00 0.00 3.55
3477 3752 5.760253 CACCCTGGATGATGAATAGTAACAC 59.240 44.000 0.00 0.00 0.00 3.32
3478 3753 5.687441 GCACCCTGGATGATGAATAGTAACA 60.687 44.000 0.00 0.00 0.00 2.41
3479 3754 4.757149 GCACCCTGGATGATGAATAGTAAC 59.243 45.833 0.00 0.00 0.00 2.50
3485 3760 1.848388 TCTGCACCCTGGATGATGAAT 59.152 47.619 0.00 0.00 0.00 2.57
3486 3761 1.288188 TCTGCACCCTGGATGATGAA 58.712 50.000 0.00 0.00 0.00 2.57
3488 3763 2.359981 ATTCTGCACCCTGGATGATG 57.640 50.000 0.00 0.00 0.00 3.07
3489 3764 3.461085 ACTTATTCTGCACCCTGGATGAT 59.539 43.478 0.00 0.00 0.00 2.45
3494 3769 5.757850 GAATAACTTATTCTGCACCCTGG 57.242 43.478 12.55 0.00 41.00 4.45
3502 3777 7.848201 ACCTCGGGTGAAGAATAACTTATTCTG 60.848 40.741 20.22 10.00 43.39 3.02
3504 3779 6.346896 ACCTCGGGTGAAGAATAACTTATTC 58.653 40.000 12.07 12.07 38.76 1.75
3510 3785 5.915175 AGATTACCTCGGGTGAAGAATAAC 58.085 41.667 5.90 0.00 36.19 1.89
3511 3786 6.555463 AAGATTACCTCGGGTGAAGAATAA 57.445 37.500 5.90 0.00 36.19 1.40
3512 3787 6.238842 CGTAAGATTACCTCGGGTGAAGAATA 60.239 42.308 5.90 0.00 36.23 1.75
3513 3788 5.451520 CGTAAGATTACCTCGGGTGAAGAAT 60.452 44.000 5.90 0.00 36.23 2.40
3514 3789 4.142315 CGTAAGATTACCTCGGGTGAAGAA 60.142 45.833 5.90 0.00 36.23 2.52
3515 3790 3.379372 CGTAAGATTACCTCGGGTGAAGA 59.621 47.826 5.90 0.00 36.23 2.87
3516 3791 3.379372 TCGTAAGATTACCTCGGGTGAAG 59.621 47.826 5.90 0.00 45.01 3.02
3518 3793 3.003394 TCGTAAGATTACCTCGGGTGA 57.997 47.619 5.90 0.00 45.01 4.02
3557 3832 9.620660 GAATGTAACTATTTGAATTCCAAACGT 57.379 29.630 2.27 0.00 46.41 3.99
3558 3833 9.072294 GGAATGTAACTATTTGAATTCCAAACG 57.928 33.333 2.27 0.00 46.41 3.60
3573 3848 9.961265 CGTAGTGAATCAATAGGAATGTAACTA 57.039 33.333 4.65 0.00 0.00 2.24
3574 3849 8.475639 ACGTAGTGAATCAATAGGAATGTAACT 58.524 33.333 15.76 0.00 42.51 2.24
3575 3850 8.644318 ACGTAGTGAATCAATAGGAATGTAAC 57.356 34.615 15.76 0.00 42.51 2.50
3578 3853 9.661563 TTTTACGTAGTGAATCAATAGGAATGT 57.338 29.630 15.76 0.13 45.73 2.71
3626 3901 8.413229 GCAAATTTTCTTGCCTTATGACCTATA 58.587 33.333 0.00 0.00 44.88 1.31
3627 3902 7.267857 GCAAATTTTCTTGCCTTATGACCTAT 58.732 34.615 0.00 0.00 44.88 2.57
3628 3903 6.630071 GCAAATTTTCTTGCCTTATGACCTA 58.370 36.000 0.00 0.00 44.88 3.08
3629 3904 5.482006 GCAAATTTTCTTGCCTTATGACCT 58.518 37.500 0.00 0.00 44.88 3.85
3630 3905 5.784750 GCAAATTTTCTTGCCTTATGACC 57.215 39.130 0.00 0.00 44.88 4.02
3717 3994 9.831737 GGCCGTAATAATATATATAATCGTCGT 57.168 33.333 0.00 0.00 0.00 4.34
3730 4007 8.932791 CGACATAAAAAGAGGCCGTAATAATAT 58.067 33.333 0.00 0.00 0.00 1.28
3731 4008 7.385752 CCGACATAAAAAGAGGCCGTAATAATA 59.614 37.037 0.00 0.00 0.00 0.98
3732 4009 6.204108 CCGACATAAAAAGAGGCCGTAATAAT 59.796 38.462 0.00 0.00 0.00 1.28
3733 4010 5.524646 CCGACATAAAAAGAGGCCGTAATAA 59.475 40.000 0.00 0.00 0.00 1.40
3734 4011 5.051816 CCGACATAAAAAGAGGCCGTAATA 58.948 41.667 0.00 0.00 0.00 0.98
3735 4012 3.875134 CCGACATAAAAAGAGGCCGTAAT 59.125 43.478 0.00 0.00 0.00 1.89
3736 4013 3.055963 TCCGACATAAAAAGAGGCCGTAA 60.056 43.478 0.00 0.00 0.00 3.18
3737 4014 2.496871 TCCGACATAAAAAGAGGCCGTA 59.503 45.455 0.00 0.00 0.00 4.02
3738 4015 1.276989 TCCGACATAAAAAGAGGCCGT 59.723 47.619 0.00 0.00 0.00 5.68
3739 4016 2.018542 TCCGACATAAAAAGAGGCCG 57.981 50.000 0.00 0.00 0.00 6.13
3740 4017 4.983671 ATTTCCGACATAAAAAGAGGCC 57.016 40.909 0.00 0.00 0.00 5.19
3741 4018 7.148306 TGTCTTATTTCCGACATAAAAAGAGGC 60.148 37.037 0.00 0.00 35.40 4.70
3742 4019 8.263940 TGTCTTATTTCCGACATAAAAAGAGG 57.736 34.615 0.00 0.00 35.40 3.69
3750 4027 8.649841 CGTAAGTTTTGTCTTATTTCCGACATA 58.350 33.333 0.00 0.00 39.63 2.29
3751 4028 7.360607 CCGTAAGTTTTGTCTTATTTCCGACAT 60.361 37.037 0.00 0.00 39.63 3.06
3752 4029 6.073657 CCGTAAGTTTTGTCTTATTTCCGACA 60.074 38.462 0.00 0.00 38.30 4.35
3753 4030 6.146021 TCCGTAAGTTTTGTCTTATTTCCGAC 59.854 38.462 0.00 0.00 33.39 4.79
3754 4031 6.222389 TCCGTAAGTTTTGTCTTATTTCCGA 58.778 36.000 0.00 0.00 33.39 4.55
3755 4032 6.470557 TCCGTAAGTTTTGTCTTATTTCCG 57.529 37.500 0.00 0.00 33.39 4.30
3756 4033 6.793680 CGTTCCGTAAGTTTTGTCTTATTTCC 59.206 38.462 0.00 0.00 33.39 3.13
3757 4034 7.347448 ACGTTCCGTAAGTTTTGTCTTATTTC 58.653 34.615 0.00 0.00 38.73 2.17
3758 4035 7.250445 ACGTTCCGTAAGTTTTGTCTTATTT 57.750 32.000 0.00 0.00 38.73 1.40
3759 4036 6.849588 ACGTTCCGTAAGTTTTGTCTTATT 57.150 33.333 0.00 0.00 38.73 1.40
3760 4037 7.945033 TTACGTTCCGTAAGTTTTGTCTTAT 57.055 32.000 5.21 0.00 45.40 1.73
3781 4058 5.646606 ACCATCAATGCACCGTAATTTTAC 58.353 37.500 0.00 0.00 0.00 2.01
3782 4059 5.906113 ACCATCAATGCACCGTAATTTTA 57.094 34.783 0.00 0.00 0.00 1.52
3783 4060 4.799564 ACCATCAATGCACCGTAATTTT 57.200 36.364 0.00 0.00 0.00 1.82
3784 4061 5.906113 TTACCATCAATGCACCGTAATTT 57.094 34.783 0.00 0.00 0.00 1.82
3785 4062 5.906113 TTTACCATCAATGCACCGTAATT 57.094 34.783 0.00 0.00 0.00 1.40
3786 4063 5.906113 TTTTACCATCAATGCACCGTAAT 57.094 34.783 0.00 0.00 0.00 1.89
3787 4064 5.906113 ATTTTACCATCAATGCACCGTAA 57.094 34.783 0.00 0.00 0.00 3.18
3788 4065 6.350103 TCTATTTTACCATCAATGCACCGTA 58.650 36.000 0.00 0.00 0.00 4.02
3789 4066 5.189928 TCTATTTTACCATCAATGCACCGT 58.810 37.500 0.00 0.00 0.00 4.83
3790 4067 5.277974 CCTCTATTTTACCATCAATGCACCG 60.278 44.000 0.00 0.00 0.00 4.94
3791 4068 5.010012 CCCTCTATTTTACCATCAATGCACC 59.990 44.000 0.00 0.00 0.00 5.01
3792 4069 5.010012 CCCCTCTATTTTACCATCAATGCAC 59.990 44.000 0.00 0.00 0.00 4.57
3793 4070 5.139727 CCCCTCTATTTTACCATCAATGCA 58.860 41.667 0.00 0.00 0.00 3.96
3794 4071 4.524328 CCCCCTCTATTTTACCATCAATGC 59.476 45.833 0.00 0.00 0.00 3.56
3814 4091 5.132144 TGAGGAATAGTTATTCTTCACCCCC 59.868 44.000 17.60 0.23 46.85 5.40
3815 4092 6.248569 TGAGGAATAGTTATTCTTCACCCC 57.751 41.667 17.60 0.81 46.85 4.95
3820 4097 6.292150 CCTGGGTGAGGAATAGTTATTCTTC 58.708 44.000 13.90 13.90 46.33 2.87
3821 4098 5.132816 CCCTGGGTGAGGAATAGTTATTCTT 59.867 44.000 3.97 4.41 46.33 2.52
3822 4099 4.660771 CCCTGGGTGAGGAATAGTTATTCT 59.339 45.833 3.97 0.00 46.33 2.40
3823 4100 4.412528 ACCCTGGGTGAGGAATAGTTATTC 59.587 45.833 19.82 3.75 46.33 1.75
3824 4101 4.380791 ACCCTGGGTGAGGAATAGTTATT 58.619 43.478 19.82 0.00 46.33 1.40
3825 4102 4.022359 ACCCTGGGTGAGGAATAGTTAT 57.978 45.455 19.82 0.00 46.33 1.89
3826 4103 3.502051 ACCCTGGGTGAGGAATAGTTA 57.498 47.619 19.82 0.00 46.33 2.24
3827 4104 2.361085 ACCCTGGGTGAGGAATAGTT 57.639 50.000 19.82 0.00 46.33 2.24
3838 4115 1.192428 GACTATTCGTCACCCTGGGT 58.808 55.000 14.05 14.05 42.37 4.51
3992 4269 6.548321 ACTAGGGACTCTGAATAGGATACTG 58.452 44.000 0.00 0.00 45.90 2.74
4079 4357 3.625764 GCAGACTGACTCTCCTAGTACAG 59.374 52.174 6.65 0.00 39.07 2.74
4343 4628 6.127101 ACTATGGCAAAGTTAAATCTACCCC 58.873 40.000 0.00 0.00 0.00 4.95
4467 4942 7.498239 GGATACACTAGGTGGAAGAAAATAACC 59.502 40.741 0.00 0.00 37.94 2.85
4556 5209 5.586243 TGTAAGCATCTGCATTCCTTCTAAC 59.414 40.000 4.79 0.00 45.16 2.34
4890 5543 4.708726 ACCTTGAGCAATAAACTCATGC 57.291 40.909 0.00 0.00 43.40 4.06
5027 5681 3.992943 ACGGGTGATGGACAAATCTAA 57.007 42.857 0.00 0.00 0.00 2.10
5097 5751 4.774200 AGGTTTTCTTTATGCTTCTGCCAT 59.226 37.500 0.00 0.00 38.71 4.40
5282 5936 8.522542 AAAACATGTACTTAAGTAACCAACCA 57.477 30.769 16.82 9.90 31.52 3.67
5326 5980 2.670934 AGCAGTGGAAAGGCAGCG 60.671 61.111 0.00 0.00 0.00 5.18
5338 5992 3.480470 AGTCAAGTTTATGCACAGCAGT 58.520 40.909 0.00 0.00 43.65 4.40
6014 6709 1.636769 GGGGGTGGACCAGGATCTTC 61.637 65.000 0.00 0.00 42.91 2.87
6089 6784 9.074576 TCCTTTTCATTCTTCTTTACCTTTACC 57.925 33.333 0.00 0.00 0.00 2.85
6257 6952 7.409343 GCAACATCGTTTTCTTTATCCTTTTCG 60.409 37.037 0.00 0.00 0.00 3.46
6261 6956 6.381801 CAGCAACATCGTTTTCTTTATCCTT 58.618 36.000 0.00 0.00 0.00 3.36
6322 7017 1.243902 ACGTGCAGTTAACCCATTGG 58.756 50.000 0.88 0.00 37.80 3.16
6334 7029 5.576447 ATTAATCCCCTTAAAACGTGCAG 57.424 39.130 0.00 0.00 33.15 4.41
6377 7072 1.201647 GTTCCACTGCTCGTAGCTACA 59.798 52.381 23.21 9.80 42.97 2.74
6427 7122 6.649973 CCAAAAATTAACACAATGGATCAGCA 59.350 34.615 0.00 0.00 0.00 4.41
6446 7141 3.242804 CCGAACTTCGCAAGTACCAAAAA 60.243 43.478 5.61 0.00 41.91 1.94
6610 7321 8.962884 ATATGTATTCATTTATGATGCGGCTA 57.037 30.769 0.00 0.00 36.56 3.93
6660 7371 9.567848 GTTTTGAGTTGATTTGAGACAAGTTTA 57.432 29.630 0.00 0.00 31.11 2.01
6661 7372 8.087750 TGTTTTGAGTTGATTTGAGACAAGTTT 58.912 29.630 0.00 0.00 31.11 2.66
6759 7474 8.988064 TGCTAAACTTTGTTTATTTGTGTTGA 57.012 26.923 3.77 0.00 0.00 3.18
6785 7501 9.607988 ATCGTGGATGAACTTTATTGTATTGTA 57.392 29.630 0.00 0.00 0.00 2.41
6840 7556 2.123468 GTGGGCAACAACACCCCT 60.123 61.111 0.00 0.00 46.43 4.79
6850 7567 1.074775 GTCATGGAGTGGTGGGCAA 59.925 57.895 0.00 0.00 0.00 4.52
6855 7575 6.573664 TTAAAAAGATGTCATGGAGTGGTG 57.426 37.500 0.00 0.00 0.00 4.17
6930 7652 5.223449 AGAAGGTAAGACCGAATTCAACA 57.777 39.130 6.22 0.00 44.90 3.33
6946 7668 1.768870 ACCTGTGCAACACTAGAAGGT 59.231 47.619 0.00 2.55 45.67 3.50
6953 7675 1.111277 GGGAAAACCTGTGCAACACT 58.889 50.000 0.00 0.00 45.67 3.55
6963 7687 4.111577 TCTATCACCTCATGGGAAAACCT 58.888 43.478 0.00 0.00 41.11 3.50
6989 7713 8.176814 ACGAGCATTGACAAAATTTGATTATG 57.823 30.769 13.19 12.00 0.00 1.90
6990 7714 8.761575 AACGAGCATTGACAAAATTTGATTAT 57.238 26.923 13.19 0.00 0.00 1.28
7006 7731 4.880120 ACATGATCATTGAGAACGAGCATT 59.120 37.500 5.16 0.00 33.74 3.56
7093 7961 6.827586 TCGAAACCCTAATTTGCTATTGTT 57.172 33.333 0.00 0.00 0.00 2.83
7100 7968 4.081917 TGGGATTTCGAAACCCTAATTTGC 60.082 41.667 31.13 14.22 43.59 3.68
7101 7969 5.652994 TGGGATTTCGAAACCCTAATTTG 57.347 39.130 31.13 0.00 43.59 2.32
7110 8412 2.299013 AGGGCTTTTGGGATTTCGAAAC 59.701 45.455 13.81 7.29 0.00 2.78
7150 8452 1.748950 TTCATAATGCTCAAGCGGCA 58.251 45.000 1.45 0.00 45.83 5.69
7189 8491 0.832626 GCTAATTGCAAGCCCCCAAT 59.167 50.000 4.94 0.00 42.31 3.16
7206 8508 8.870075 ATAACTTTGGATACTTTCTTGAAGCT 57.130 30.769 0.00 0.00 39.04 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.