Multiple sequence alignment - TraesCS2D01G290500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G290500 chr2D 100.000 3470 0 0 1 3470 372702871 372699402 0.000000e+00 6408
1 TraesCS2D01G290500 chr2D 93.451 397 25 1 3 399 190599965 190600360 3.860000e-164 588
2 TraesCS2D01G290500 chr2D 92.000 400 28 3 1 399 570105653 570106049 3.020000e-155 558
3 TraesCS2D01G290500 chr2A 93.503 2401 122 24 399 2779 504078388 504076002 0.000000e+00 3539
4 TraesCS2D01G290500 chr2A 91.436 397 32 2 3 399 598630781 598630387 8.470000e-151 544
5 TraesCS2D01G290500 chr2B 95.008 1182 46 9 1615 2786 442311213 442310035 0.000000e+00 1844
6 TraesCS2D01G290500 chr2B 91.000 1200 53 22 442 1617 442312541 442311373 0.000000e+00 1567
7 TraesCS2D01G290500 chr2B 91.729 399 33 0 1 399 745042769 745043167 3.910000e-154 555
8 TraesCS2D01G290500 chr3D 98.547 688 7 2 2785 3470 594575997 594576683 0.000000e+00 1212
9 TraesCS2D01G290500 chr7B 93.182 704 39 5 2775 3470 18496553 18497255 0.000000e+00 1026
10 TraesCS2D01G290500 chr5D 94.205 673 36 3 2800 3470 318484916 318484245 0.000000e+00 1024
11 TraesCS2D01G290500 chr7D 93.713 684 36 4 2791 3470 543333267 543332587 0.000000e+00 1018
12 TraesCS2D01G290500 chr7D 92.802 389 28 0 11 399 566127331 566127719 6.500000e-157 564
13 TraesCS2D01G290500 chr7D 91.500 400 31 3 1 399 27179319 27179716 6.550000e-152 547
14 TraesCS2D01G290500 chr1D 93.208 692 35 4 2791 3470 463992288 463992979 0.000000e+00 1007
15 TraesCS2D01G290500 chr7A 92.722 687 42 3 2791 3470 510616492 510615807 0.000000e+00 985
16 TraesCS2D01G290500 chr7A 91.582 689 48 5 2785 3470 672151168 672151849 0.000000e+00 942
17 TraesCS2D01G290500 chr7A 91.904 667 51 2 2807 3470 75403123 75402457 0.000000e+00 929
18 TraesCS2D01G290500 chr3A 91.557 687 48 7 2788 3470 625390027 625389347 0.000000e+00 939
19 TraesCS2D01G290500 chr4A 92.732 399 29 0 1 399 648473031 648472633 8.350000e-161 577
20 TraesCS2D01G290500 chr5B 91.980 399 32 0 1 399 508816676 508816278 8.410000e-156 560
21 TraesCS2D01G290500 chr4D 92.167 383 30 0 17 399 459064890 459064508 3.050000e-150 542


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G290500 chr2D 372699402 372702871 3469 True 6408.0 6408 100.000 1 3470 1 chr2D.!!$R1 3469
1 TraesCS2D01G290500 chr2A 504076002 504078388 2386 True 3539.0 3539 93.503 399 2779 1 chr2A.!!$R1 2380
2 TraesCS2D01G290500 chr2B 442310035 442312541 2506 True 1705.5 1844 93.004 442 2786 2 chr2B.!!$R1 2344
3 TraesCS2D01G290500 chr3D 594575997 594576683 686 False 1212.0 1212 98.547 2785 3470 1 chr3D.!!$F1 685
4 TraesCS2D01G290500 chr7B 18496553 18497255 702 False 1026.0 1026 93.182 2775 3470 1 chr7B.!!$F1 695
5 TraesCS2D01G290500 chr5D 318484245 318484916 671 True 1024.0 1024 94.205 2800 3470 1 chr5D.!!$R1 670
6 TraesCS2D01G290500 chr7D 543332587 543333267 680 True 1018.0 1018 93.713 2791 3470 1 chr7D.!!$R1 679
7 TraesCS2D01G290500 chr1D 463992288 463992979 691 False 1007.0 1007 93.208 2791 3470 1 chr1D.!!$F1 679
8 TraesCS2D01G290500 chr7A 510615807 510616492 685 True 985.0 985 92.722 2791 3470 1 chr7A.!!$R2 679
9 TraesCS2D01G290500 chr7A 672151168 672151849 681 False 942.0 942 91.582 2785 3470 1 chr7A.!!$F1 685
10 TraesCS2D01G290500 chr7A 75402457 75403123 666 True 929.0 929 91.904 2807 3470 1 chr7A.!!$R1 663
11 TraesCS2D01G290500 chr3A 625389347 625390027 680 True 939.0 939 91.557 2788 3470 1 chr3A.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 246 0.093026 GTGTGCGTCGATGTAGTTGC 59.907 55.0 6.48 0.0 0.00 4.17 F
299 300 0.251916 GGTGTCCGGATGTGGATTGA 59.748 55.0 7.81 0.0 40.91 2.57 F
1151 1177 0.255890 GATCTGCCTTGCCCCTAACA 59.744 55.0 0.00 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1235 0.317479 AGCCACACGGTGACTAAGAC 59.683 55.0 16.29 0.0 35.23 3.01 R
1212 1238 0.882927 GCAAGCCACACGGTGACTAA 60.883 55.0 16.29 0.0 35.23 2.24 R
2878 3088 0.256177 TGTGTGTGTTGGGTTGGCTA 59.744 50.0 0.00 0.0 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.598273 CGAAGGAGGAGAAGGAGGA 57.402 57.895 0.00 0.00 0.00 3.71
21 22 1.107945 CGAAGGAGGAGAAGGAGGAC 58.892 60.000 0.00 0.00 0.00 3.85
22 23 1.617263 CGAAGGAGGAGAAGGAGGACA 60.617 57.143 0.00 0.00 0.00 4.02
23 24 2.541466 GAAGGAGGAGAAGGAGGACAA 58.459 52.381 0.00 0.00 0.00 3.18
24 25 1.945580 AGGAGGAGAAGGAGGACAAC 58.054 55.000 0.00 0.00 0.00 3.32
25 26 0.533032 GGAGGAGAAGGAGGACAACG 59.467 60.000 0.00 0.00 0.00 4.10
26 27 1.546961 GAGGAGAAGGAGGACAACGA 58.453 55.000 0.00 0.00 0.00 3.85
27 28 1.202817 GAGGAGAAGGAGGACAACGAC 59.797 57.143 0.00 0.00 0.00 4.34
28 29 0.109226 GGAGAAGGAGGACAACGACG 60.109 60.000 0.00 0.00 0.00 5.12
29 30 0.109226 GAGAAGGAGGACAACGACGG 60.109 60.000 0.00 0.00 0.00 4.79
30 31 1.737008 GAAGGAGGACAACGACGGC 60.737 63.158 0.00 0.00 0.00 5.68
31 32 3.569049 AAGGAGGACAACGACGGCG 62.569 63.158 10.39 10.39 44.79 6.46
32 33 4.047059 GGAGGACAACGACGGCGA 62.047 66.667 22.49 0.00 41.64 5.54
33 34 2.504244 GAGGACAACGACGGCGAG 60.504 66.667 22.49 12.80 41.64 5.03
34 35 3.966026 GAGGACAACGACGGCGAGG 62.966 68.421 22.49 11.93 41.64 4.63
35 36 4.047059 GGACAACGACGGCGAGGA 62.047 66.667 22.49 0.00 41.64 3.71
36 37 2.804090 GACAACGACGGCGAGGAC 60.804 66.667 22.49 5.19 41.64 3.85
37 38 3.547249 GACAACGACGGCGAGGACA 62.547 63.158 22.49 0.00 41.64 4.02
38 39 2.355363 CAACGACGGCGAGGACAA 60.355 61.111 22.49 0.00 41.64 3.18
39 40 2.355481 AACGACGGCGAGGACAAC 60.355 61.111 22.49 0.00 41.64 3.32
40 41 2.853290 AACGACGGCGAGGACAACT 61.853 57.895 22.49 0.00 41.64 3.16
41 42 2.504244 CGACGGCGAGGACAACTC 60.504 66.667 16.62 0.00 43.02 3.01
42 43 2.126031 GACGGCGAGGACAACTCC 60.126 66.667 16.62 0.00 43.57 3.85
43 44 3.966026 GACGGCGAGGACAACTCCG 62.966 68.421 16.62 0.00 43.57 4.63
44 45 4.796231 CGGCGAGGACAACTCCGG 62.796 72.222 0.00 0.00 43.57 5.14
47 48 3.744719 CGAGGACAACTCCGGCGA 61.745 66.667 9.30 0.00 43.57 5.54
48 49 2.126031 GAGGACAACTCCGGCGAC 60.126 66.667 9.30 0.00 42.22 5.19
62 63 3.893763 CGACGAGCAGATCCGGCT 61.894 66.667 9.08 9.08 46.07 5.52
67 68 3.046870 AGCAGATCCGGCTCGATC 58.953 61.111 0.00 0.00 36.81 3.69
68 69 2.048690 GCAGATCCGGCTCGATCC 60.049 66.667 0.00 0.00 39.67 3.36
75 76 2.353607 CGGCTCGATCCGTACTGC 60.354 66.667 19.25 0.00 44.18 4.40
76 77 2.353607 GGCTCGATCCGTACTGCG 60.354 66.667 0.00 0.00 40.95 5.18
77 78 2.408022 GCTCGATCCGTACTGCGT 59.592 61.111 0.00 0.00 39.32 5.24
78 79 1.654743 GCTCGATCCGTACTGCGTC 60.655 63.158 0.00 0.00 39.32 5.19
79 80 2.015382 CTCGATCCGTACTGCGTCT 58.985 57.895 0.00 0.00 39.32 4.18
80 81 0.377554 CTCGATCCGTACTGCGTCTT 59.622 55.000 0.00 0.00 39.32 3.01
81 82 0.376152 TCGATCCGTACTGCGTCTTC 59.624 55.000 0.00 0.00 39.32 2.87
82 83 0.924363 CGATCCGTACTGCGTCTTCG 60.924 60.000 0.00 0.00 39.32 3.79
83 84 0.376152 GATCCGTACTGCGTCTTCGA 59.624 55.000 0.00 0.00 39.71 3.71
84 85 0.098376 ATCCGTACTGCGTCTTCGAC 59.902 55.000 0.00 0.00 39.71 4.20
85 86 1.513586 CCGTACTGCGTCTTCGACC 60.514 63.158 0.00 0.00 39.71 4.79
86 87 1.862147 CGTACTGCGTCTTCGACCG 60.862 63.158 0.00 0.00 39.71 4.79
87 88 1.513586 GTACTGCGTCTTCGACCGG 60.514 63.158 0.00 0.00 39.71 5.28
88 89 1.968017 TACTGCGTCTTCGACCGGT 60.968 57.895 6.92 6.92 39.71 5.28
89 90 0.673333 TACTGCGTCTTCGACCGGTA 60.673 55.000 7.34 0.00 39.71 4.02
90 91 1.513586 CTGCGTCTTCGACCGGTAC 60.514 63.158 7.34 0.00 39.71 3.34
91 92 1.919956 CTGCGTCTTCGACCGGTACT 61.920 60.000 7.34 0.00 39.71 2.73
92 93 1.211190 GCGTCTTCGACCGGTACTT 59.789 57.895 7.34 0.00 39.71 2.24
93 94 0.796113 GCGTCTTCGACCGGTACTTC 60.796 60.000 7.34 0.00 39.71 3.01
94 95 0.179179 CGTCTTCGACCGGTACTTCC 60.179 60.000 7.34 0.00 39.71 3.46
108 109 4.430765 TTCCGCGAGAAGGACGGC 62.431 66.667 8.23 0.00 46.49 5.68
110 111 4.735132 CCGCGAGAAGGACGGCAA 62.735 66.667 8.23 0.00 40.55 4.52
111 112 3.181967 CGCGAGAAGGACGGCAAG 61.182 66.667 0.00 0.00 0.00 4.01
112 113 2.815647 GCGAGAAGGACGGCAAGG 60.816 66.667 0.00 0.00 0.00 3.61
113 114 2.125512 CGAGAAGGACGGCAAGGG 60.126 66.667 0.00 0.00 0.00 3.95
114 115 2.436824 GAGAAGGACGGCAAGGGC 60.437 66.667 0.00 0.00 40.13 5.19
143 144 3.136123 CAAGGGCAGCCGTGGATG 61.136 66.667 7.59 0.00 34.24 3.51
144 145 3.329889 AAGGGCAGCCGTGGATGA 61.330 61.111 7.59 0.00 32.62 2.92
145 146 2.905996 AAGGGCAGCCGTGGATGAA 61.906 57.895 7.59 0.00 32.62 2.57
146 147 3.134127 GGGCAGCCGTGGATGAAC 61.134 66.667 8.61 0.00 32.62 3.18
147 148 2.045926 GGCAGCCGTGGATGAACT 60.046 61.111 8.61 0.00 32.62 3.01
148 149 2.109126 GGCAGCCGTGGATGAACTC 61.109 63.158 8.61 0.00 32.62 3.01
149 150 2.109126 GCAGCCGTGGATGAACTCC 61.109 63.158 8.61 0.00 45.19 3.85
158 159 2.262423 GGATGAACTCCACCATAGCC 57.738 55.000 0.00 0.00 44.26 3.93
159 160 1.490490 GGATGAACTCCACCATAGCCA 59.510 52.381 0.00 0.00 44.26 4.75
160 161 2.092429 GGATGAACTCCACCATAGCCAA 60.092 50.000 0.00 0.00 44.26 4.52
161 162 3.620488 GATGAACTCCACCATAGCCAAA 58.380 45.455 0.00 0.00 0.00 3.28
162 163 2.790433 TGAACTCCACCATAGCCAAAC 58.210 47.619 0.00 0.00 0.00 2.93
163 164 2.107378 TGAACTCCACCATAGCCAAACA 59.893 45.455 0.00 0.00 0.00 2.83
164 165 3.245229 TGAACTCCACCATAGCCAAACAT 60.245 43.478 0.00 0.00 0.00 2.71
165 166 2.726821 ACTCCACCATAGCCAAACATG 58.273 47.619 0.00 0.00 0.00 3.21
166 167 1.406539 CTCCACCATAGCCAAACATGC 59.593 52.381 0.00 0.00 0.00 4.06
167 168 0.461135 CCACCATAGCCAAACATGCC 59.539 55.000 0.00 0.00 0.00 4.40
168 169 1.184431 CACCATAGCCAAACATGCCA 58.816 50.000 0.00 0.00 0.00 4.92
169 170 1.549620 CACCATAGCCAAACATGCCAA 59.450 47.619 0.00 0.00 0.00 4.52
170 171 2.028294 CACCATAGCCAAACATGCCAAA 60.028 45.455 0.00 0.00 0.00 3.28
171 172 2.839425 ACCATAGCCAAACATGCCAAAT 59.161 40.909 0.00 0.00 0.00 2.32
172 173 3.263937 ACCATAGCCAAACATGCCAAATT 59.736 39.130 0.00 0.00 0.00 1.82
173 174 4.263418 ACCATAGCCAAACATGCCAAATTT 60.263 37.500 0.00 0.00 0.00 1.82
174 175 4.701171 CCATAGCCAAACATGCCAAATTTT 59.299 37.500 0.00 0.00 0.00 1.82
175 176 5.392165 CCATAGCCAAACATGCCAAATTTTG 60.392 40.000 1.99 1.99 0.00 2.44
176 177 3.818180 AGCCAAACATGCCAAATTTTGA 58.182 36.364 10.72 0.00 31.79 2.69
177 178 4.400120 AGCCAAACATGCCAAATTTTGAT 58.600 34.783 10.72 0.00 31.79 2.57
178 179 5.558818 AGCCAAACATGCCAAATTTTGATA 58.441 33.333 10.72 0.00 31.79 2.15
179 180 5.644636 AGCCAAACATGCCAAATTTTGATAG 59.355 36.000 10.72 0.97 31.79 2.08
180 181 5.412286 GCCAAACATGCCAAATTTTGATAGT 59.588 36.000 10.72 1.54 31.79 2.12
181 182 6.402442 GCCAAACATGCCAAATTTTGATAGTC 60.402 38.462 10.72 0.00 31.79 2.59
182 183 6.092533 CCAAACATGCCAAATTTTGATAGTCC 59.907 38.462 10.72 0.00 31.79 3.85
183 184 4.997565 ACATGCCAAATTTTGATAGTCCG 58.002 39.130 10.72 0.00 0.00 4.79
184 185 4.704540 ACATGCCAAATTTTGATAGTCCGA 59.295 37.500 10.72 0.00 0.00 4.55
185 186 5.360714 ACATGCCAAATTTTGATAGTCCGAT 59.639 36.000 10.72 0.00 0.00 4.18
186 187 5.247507 TGCCAAATTTTGATAGTCCGATG 57.752 39.130 10.72 0.00 0.00 3.84
187 188 4.097741 TGCCAAATTTTGATAGTCCGATGG 59.902 41.667 10.72 0.00 0.00 3.51
188 189 4.610945 CCAAATTTTGATAGTCCGATGGC 58.389 43.478 10.72 0.00 0.00 4.40
189 190 4.097741 CCAAATTTTGATAGTCCGATGGCA 59.902 41.667 10.72 0.00 0.00 4.92
190 191 5.221303 CCAAATTTTGATAGTCCGATGGCAT 60.221 40.000 10.72 0.00 0.00 4.40
191 192 5.443185 AATTTTGATAGTCCGATGGCATG 57.557 39.130 3.81 0.00 0.00 4.06
192 193 3.558931 TTTGATAGTCCGATGGCATGT 57.441 42.857 3.81 0.00 0.00 3.21
193 194 3.558931 TTGATAGTCCGATGGCATGTT 57.441 42.857 3.81 0.00 0.00 2.71
194 195 3.558931 TGATAGTCCGATGGCATGTTT 57.441 42.857 3.81 0.00 0.00 2.83
195 196 4.681074 TGATAGTCCGATGGCATGTTTA 57.319 40.909 3.81 0.00 0.00 2.01
196 197 4.631131 TGATAGTCCGATGGCATGTTTAG 58.369 43.478 3.81 0.00 0.00 1.85
197 198 4.100963 TGATAGTCCGATGGCATGTTTAGT 59.899 41.667 3.81 0.00 0.00 2.24
198 199 2.632377 AGTCCGATGGCATGTTTAGTG 58.368 47.619 3.81 0.00 0.00 2.74
199 200 2.027192 AGTCCGATGGCATGTTTAGTGT 60.027 45.455 3.81 0.00 0.00 3.55
200 201 3.196901 AGTCCGATGGCATGTTTAGTGTA 59.803 43.478 3.81 0.00 0.00 2.90
201 202 3.555956 GTCCGATGGCATGTTTAGTGTAG 59.444 47.826 3.81 0.00 0.00 2.74
202 203 3.196901 TCCGATGGCATGTTTAGTGTAGT 59.803 43.478 3.81 0.00 0.00 2.73
203 204 3.309682 CCGATGGCATGTTTAGTGTAGTG 59.690 47.826 3.81 0.00 0.00 2.74
204 205 3.932710 CGATGGCATGTTTAGTGTAGTGT 59.067 43.478 3.81 0.00 0.00 3.55
205 206 4.201714 CGATGGCATGTTTAGTGTAGTGTG 60.202 45.833 3.81 0.00 0.00 3.82
206 207 4.344359 TGGCATGTTTAGTGTAGTGTGA 57.656 40.909 0.00 0.00 0.00 3.58
207 208 4.905429 TGGCATGTTTAGTGTAGTGTGAT 58.095 39.130 0.00 0.00 0.00 3.06
208 209 4.694982 TGGCATGTTTAGTGTAGTGTGATG 59.305 41.667 0.00 0.00 0.00 3.07
209 210 4.094887 GGCATGTTTAGTGTAGTGTGATGG 59.905 45.833 0.00 0.00 0.00 3.51
210 211 4.935205 GCATGTTTAGTGTAGTGTGATGGA 59.065 41.667 0.00 0.00 0.00 3.41
211 212 5.063944 GCATGTTTAGTGTAGTGTGATGGAG 59.936 44.000 0.00 0.00 0.00 3.86
212 213 5.801531 TGTTTAGTGTAGTGTGATGGAGT 57.198 39.130 0.00 0.00 0.00 3.85
213 214 6.904463 TGTTTAGTGTAGTGTGATGGAGTA 57.096 37.500 0.00 0.00 0.00 2.59
214 215 6.920817 TGTTTAGTGTAGTGTGATGGAGTAG 58.079 40.000 0.00 0.00 0.00 2.57
215 216 5.578005 TTAGTGTAGTGTGATGGAGTAGC 57.422 43.478 0.00 0.00 0.00 3.58
216 217 2.761208 AGTGTAGTGTGATGGAGTAGCC 59.239 50.000 0.00 0.00 37.10 3.93
217 218 1.749063 TGTAGTGTGATGGAGTAGCCG 59.251 52.381 0.00 0.00 40.66 5.52
218 219 1.067212 GTAGTGTGATGGAGTAGCCGG 59.933 57.143 0.00 0.00 40.66 6.13
219 220 1.144057 GTGTGATGGAGTAGCCGGG 59.856 63.158 2.18 0.00 40.66 5.73
220 221 2.109181 GTGATGGAGTAGCCGGGC 59.891 66.667 12.11 12.11 40.66 6.13
221 222 2.364973 TGATGGAGTAGCCGGGCA 60.365 61.111 23.09 4.27 40.66 5.36
222 223 1.992834 TGATGGAGTAGCCGGGCAA 60.993 57.895 23.09 0.00 40.66 4.52
223 224 1.344953 TGATGGAGTAGCCGGGCAAT 61.345 55.000 23.09 6.02 40.66 3.56
224 225 0.886490 GATGGAGTAGCCGGGCAATG 60.886 60.000 23.09 0.00 40.66 2.82
225 226 2.902343 GGAGTAGCCGGGCAATGC 60.902 66.667 23.09 7.85 0.00 3.56
226 227 3.272334 GAGTAGCCGGGCAATGCG 61.272 66.667 23.09 0.00 0.00 4.73
227 228 4.096003 AGTAGCCGGGCAATGCGT 62.096 61.111 23.09 0.97 0.00 5.24
228 229 3.876198 GTAGCCGGGCAATGCGTG 61.876 66.667 23.09 0.00 0.00 5.34
229 230 4.402528 TAGCCGGGCAATGCGTGT 62.403 61.111 23.09 0.00 0.00 4.49
241 242 2.987593 GCGTGTGCGTCGATGTAG 59.012 61.111 6.48 0.00 40.81 2.74
242 243 1.800315 GCGTGTGCGTCGATGTAGT 60.800 57.895 6.48 0.00 40.81 2.73
243 244 1.342082 GCGTGTGCGTCGATGTAGTT 61.342 55.000 6.48 0.00 40.81 2.24
244 245 0.362179 CGTGTGCGTCGATGTAGTTG 59.638 55.000 6.48 0.00 0.00 3.16
245 246 0.093026 GTGTGCGTCGATGTAGTTGC 59.907 55.000 6.48 0.00 0.00 4.17
246 247 0.319125 TGTGCGTCGATGTAGTTGCA 60.319 50.000 6.48 0.00 0.00 4.08
247 248 0.999406 GTGCGTCGATGTAGTTGCAT 59.001 50.000 6.48 0.00 34.54 3.96
248 249 0.998669 TGCGTCGATGTAGTTGCATG 59.001 50.000 6.48 0.00 0.00 4.06
249 250 1.277326 GCGTCGATGTAGTTGCATGA 58.723 50.000 6.48 0.00 0.00 3.07
250 251 1.256376 GCGTCGATGTAGTTGCATGAG 59.744 52.381 6.48 0.00 0.00 2.90
251 252 2.530177 CGTCGATGTAGTTGCATGAGT 58.470 47.619 0.00 0.00 0.00 3.41
252 253 2.923655 CGTCGATGTAGTTGCATGAGTT 59.076 45.455 0.00 0.00 0.00 3.01
253 254 3.367932 CGTCGATGTAGTTGCATGAGTTT 59.632 43.478 0.00 0.00 0.00 2.66
254 255 4.641954 GTCGATGTAGTTGCATGAGTTTG 58.358 43.478 0.00 0.00 0.00 2.93
255 256 4.152402 GTCGATGTAGTTGCATGAGTTTGT 59.848 41.667 0.00 0.00 0.00 2.83
256 257 5.347635 GTCGATGTAGTTGCATGAGTTTGTA 59.652 40.000 0.00 0.00 0.00 2.41
257 258 6.036083 GTCGATGTAGTTGCATGAGTTTGTAT 59.964 38.462 0.00 0.00 0.00 2.29
258 259 6.035975 TCGATGTAGTTGCATGAGTTTGTATG 59.964 38.462 0.00 0.00 0.00 2.39
259 260 5.878332 TGTAGTTGCATGAGTTTGTATGG 57.122 39.130 0.00 0.00 0.00 2.74
260 261 5.555966 TGTAGTTGCATGAGTTTGTATGGA 58.444 37.500 0.00 0.00 0.00 3.41
261 262 6.179756 TGTAGTTGCATGAGTTTGTATGGAT 58.820 36.000 0.00 0.00 0.00 3.41
262 263 6.658816 TGTAGTTGCATGAGTTTGTATGGATT 59.341 34.615 0.00 0.00 0.00 3.01
263 264 6.594788 AGTTGCATGAGTTTGTATGGATTT 57.405 33.333 0.00 0.00 0.00 2.17
264 265 6.392354 AGTTGCATGAGTTTGTATGGATTTG 58.608 36.000 0.00 0.00 0.00 2.32
265 266 6.209192 AGTTGCATGAGTTTGTATGGATTTGA 59.791 34.615 0.00 0.00 0.00 2.69
266 267 6.198650 TGCATGAGTTTGTATGGATTTGAG 57.801 37.500 0.00 0.00 0.00 3.02
267 268 5.945191 TGCATGAGTTTGTATGGATTTGAGA 59.055 36.000 0.00 0.00 0.00 3.27
268 269 6.604396 TGCATGAGTTTGTATGGATTTGAGAT 59.396 34.615 0.00 0.00 0.00 2.75
269 270 7.774625 TGCATGAGTTTGTATGGATTTGAGATA 59.225 33.333 0.00 0.00 0.00 1.98
270 271 8.790718 GCATGAGTTTGTATGGATTTGAGATAT 58.209 33.333 0.00 0.00 0.00 1.63
272 273 8.681486 TGAGTTTGTATGGATTTGAGATATGG 57.319 34.615 0.00 0.00 0.00 2.74
273 274 8.274322 TGAGTTTGTATGGATTTGAGATATGGT 58.726 33.333 0.00 0.00 0.00 3.55
274 275 9.778741 GAGTTTGTATGGATTTGAGATATGGTA 57.221 33.333 0.00 0.00 0.00 3.25
281 282 8.874744 ATGGATTTGAGATATGGTAATTGAGG 57.125 34.615 0.00 0.00 0.00 3.86
282 283 7.815383 TGGATTTGAGATATGGTAATTGAGGT 58.185 34.615 0.00 0.00 0.00 3.85
283 284 7.720957 TGGATTTGAGATATGGTAATTGAGGTG 59.279 37.037 0.00 0.00 0.00 4.00
284 285 7.721399 GGATTTGAGATATGGTAATTGAGGTGT 59.279 37.037 0.00 0.00 0.00 4.16
285 286 8.682936 ATTTGAGATATGGTAATTGAGGTGTC 57.317 34.615 0.00 0.00 0.00 3.67
286 287 6.174720 TGAGATATGGTAATTGAGGTGTCC 57.825 41.667 0.00 0.00 0.00 4.02
287 288 5.215252 AGATATGGTAATTGAGGTGTCCG 57.785 43.478 0.00 0.00 0.00 4.79
288 289 2.710096 ATGGTAATTGAGGTGTCCGG 57.290 50.000 0.00 0.00 0.00 5.14
289 290 1.646912 TGGTAATTGAGGTGTCCGGA 58.353 50.000 0.00 0.00 0.00 5.14
290 291 2.193127 TGGTAATTGAGGTGTCCGGAT 58.807 47.619 7.81 0.00 0.00 4.18
291 292 2.093181 TGGTAATTGAGGTGTCCGGATG 60.093 50.000 7.81 0.00 0.00 3.51
292 293 2.093128 GGTAATTGAGGTGTCCGGATGT 60.093 50.000 7.81 0.00 0.00 3.06
293 294 2.113860 AATTGAGGTGTCCGGATGTG 57.886 50.000 7.81 0.00 0.00 3.21
294 295 0.253044 ATTGAGGTGTCCGGATGTGG 59.747 55.000 7.81 0.00 0.00 4.17
295 296 0.834261 TTGAGGTGTCCGGATGTGGA 60.834 55.000 7.81 0.00 35.04 4.02
296 297 0.617535 TGAGGTGTCCGGATGTGGAT 60.618 55.000 7.81 0.00 40.91 3.41
297 298 0.541863 GAGGTGTCCGGATGTGGATT 59.458 55.000 7.81 0.00 40.91 3.01
298 299 0.253044 AGGTGTCCGGATGTGGATTG 59.747 55.000 7.81 0.00 40.91 2.67
299 300 0.251916 GGTGTCCGGATGTGGATTGA 59.748 55.000 7.81 0.00 40.91 2.57
300 301 1.339631 GGTGTCCGGATGTGGATTGAA 60.340 52.381 7.81 0.00 40.91 2.69
301 302 2.643551 GTGTCCGGATGTGGATTGAAT 58.356 47.619 7.81 0.00 40.91 2.57
302 303 3.016736 GTGTCCGGATGTGGATTGAATT 58.983 45.455 7.81 0.00 40.91 2.17
303 304 3.443681 GTGTCCGGATGTGGATTGAATTT 59.556 43.478 7.81 0.00 40.91 1.82
304 305 4.082245 GTGTCCGGATGTGGATTGAATTTT 60.082 41.667 7.81 0.00 40.91 1.82
305 306 4.526262 TGTCCGGATGTGGATTGAATTTTT 59.474 37.500 7.81 0.00 40.91 1.94
321 322 1.981256 TTTTTGAGGAGTGCCCAGTC 58.019 50.000 0.00 0.00 37.41 3.51
322 323 0.843309 TTTTGAGGAGTGCCCAGTCA 59.157 50.000 5.56 0.00 37.41 3.41
323 324 0.397941 TTTGAGGAGTGCCCAGTCAG 59.602 55.000 5.56 0.00 37.41 3.51
324 325 0.764369 TTGAGGAGTGCCCAGTCAGT 60.764 55.000 5.56 0.00 37.41 3.41
325 326 1.294780 GAGGAGTGCCCAGTCAGTG 59.705 63.158 5.56 0.00 37.41 3.66
326 327 2.359230 GGAGTGCCCAGTCAGTGC 60.359 66.667 5.56 0.00 32.47 4.40
327 328 2.359230 GAGTGCCCAGTCAGTGCC 60.359 66.667 0.00 0.00 0.00 5.01
328 329 3.909086 GAGTGCCCAGTCAGTGCCC 62.909 68.421 0.00 0.00 0.00 5.36
334 335 4.394712 CAGTCAGTGCCCCCGGAC 62.395 72.222 0.73 0.00 0.00 4.79
373 374 3.124921 CGTTTGAGCGGCCGGATT 61.125 61.111 29.38 0.00 0.00 3.01
374 375 2.686816 CGTTTGAGCGGCCGGATTT 61.687 57.895 29.38 0.00 0.00 2.17
375 376 1.154035 GTTTGAGCGGCCGGATTTG 60.154 57.895 29.38 0.00 0.00 2.32
376 377 2.988688 TTTGAGCGGCCGGATTTGC 61.989 57.895 29.38 8.88 0.00 3.68
383 384 2.885113 GCCGGATTTGCCAAGTCC 59.115 61.111 5.05 8.84 35.94 3.85
387 388 3.249687 GGATTTGCCAAGTCCGTCT 57.750 52.632 2.98 0.00 36.34 4.18
388 389 2.396590 GGATTTGCCAAGTCCGTCTA 57.603 50.000 2.98 0.00 36.34 2.59
389 390 2.919228 GGATTTGCCAAGTCCGTCTAT 58.081 47.619 2.98 0.00 36.34 1.98
390 391 4.067972 GGATTTGCCAAGTCCGTCTATA 57.932 45.455 2.98 0.00 36.34 1.31
391 392 4.058817 GGATTTGCCAAGTCCGTCTATAG 58.941 47.826 2.98 0.00 36.34 1.31
392 393 4.202223 GGATTTGCCAAGTCCGTCTATAGA 60.202 45.833 2.98 0.00 36.34 1.98
393 394 5.511545 GGATTTGCCAAGTCCGTCTATAGAT 60.512 44.000 5.57 0.00 36.34 1.98
394 395 4.322080 TTGCCAAGTCCGTCTATAGATG 57.678 45.455 14.14 14.14 0.00 2.90
395 396 2.035961 TGCCAAGTCCGTCTATAGATGC 59.964 50.000 15.44 4.29 0.00 3.91
396 397 2.297597 GCCAAGTCCGTCTATAGATGCT 59.702 50.000 15.44 6.39 0.00 3.79
397 398 3.612955 GCCAAGTCCGTCTATAGATGCTC 60.613 52.174 15.44 10.39 0.00 4.26
401 402 4.917385 AGTCCGTCTATAGATGCTCTGAT 58.083 43.478 15.44 0.00 0.00 2.90
407 408 5.645929 CGTCTATAGATGCTCTGATGGTAGT 59.354 44.000 9.01 0.00 0.00 2.73
414 415 1.927895 CTCTGATGGTAGTTGGACGC 58.072 55.000 0.00 0.00 0.00 5.19
425 426 2.904131 TGGACGCACCACTTGACA 59.096 55.556 0.00 0.00 44.64 3.58
432 433 1.668419 GCACCACTTGACACACTCTT 58.332 50.000 0.00 0.00 0.00 2.85
435 436 3.815401 GCACCACTTGACACACTCTTAAT 59.185 43.478 0.00 0.00 0.00 1.40
437 438 5.468746 GCACCACTTGACACACTCTTAATTA 59.531 40.000 0.00 0.00 0.00 1.40
439 440 7.308589 GCACCACTTGACACACTCTTAATTAAT 60.309 37.037 0.00 0.00 0.00 1.40
440 441 8.567948 CACCACTTGACACACTCTTAATTAATT 58.432 33.333 5.89 5.89 0.00 1.40
459 460 9.454859 AATTAATTAAAGTGACTCTTGAGGAGG 57.545 33.333 1.21 0.00 45.83 4.30
461 462 5.888982 TTAAAGTGACTCTTGAGGAGGTT 57.111 39.130 0.00 0.00 45.83 3.50
523 525 4.466726 ACCCCTTAACTAGTTGCTCTACTG 59.533 45.833 18.56 2.18 0.00 2.74
524 526 4.141914 CCCCTTAACTAGTTGCTCTACTGG 60.142 50.000 18.56 6.98 33.32 4.00
713 732 4.215613 ACGGTCCAAACAAGATAAGAAAGC 59.784 41.667 0.00 0.00 0.00 3.51
714 733 4.669197 CGGTCCAAACAAGATAAGAAAGCG 60.669 45.833 0.00 0.00 0.00 4.68
718 737 5.048991 TCCAAACAAGATAAGAAAGCGGAAC 60.049 40.000 0.00 0.00 0.00 3.62
800 819 3.570559 CGTCAATACGGGCAAACAAAAT 58.429 40.909 0.00 0.00 45.50 1.82
1149 1175 0.548031 CAGATCTGCCTTGCCCCTAA 59.452 55.000 10.38 0.00 0.00 2.69
1151 1177 0.255890 GATCTGCCTTGCCCCTAACA 59.744 55.000 0.00 0.00 0.00 2.41
1152 1178 0.929244 ATCTGCCTTGCCCCTAACAT 59.071 50.000 0.00 0.00 0.00 2.71
1170 1196 4.736611 ACATCCCAGATCTGCCATTTAT 57.263 40.909 17.76 1.14 0.00 1.40
1179 1205 0.890996 CTGCCATTTATCTCCCCGCC 60.891 60.000 0.00 0.00 0.00 6.13
1209 1235 3.678548 GTGAAAGGACGGTGCTTACTTAG 59.321 47.826 15.44 0.00 0.00 2.18
1210 1236 3.322828 TGAAAGGACGGTGCTTACTTAGT 59.677 43.478 15.44 0.00 0.00 2.24
1211 1237 3.589495 AAGGACGGTGCTTACTTAGTC 57.411 47.619 13.53 0.00 0.00 2.59
1212 1238 2.805194 AGGACGGTGCTTACTTAGTCT 58.195 47.619 0.00 0.00 0.00 3.24
1213 1239 3.163467 AGGACGGTGCTTACTTAGTCTT 58.837 45.455 0.00 0.00 0.00 3.01
1214 1240 4.338879 AGGACGGTGCTTACTTAGTCTTA 58.661 43.478 0.00 0.00 0.00 2.10
1224 1250 5.335504 GCTTACTTAGTCTTAGTCACCGTGT 60.336 44.000 0.00 0.00 0.00 4.49
1268 1294 4.856801 GGTGGCCGGCATCGTCAT 62.857 66.667 30.85 0.00 33.95 3.06
1356 1387 4.098044 TCATCTTATGTCTTCTCGGTGGTC 59.902 45.833 0.00 0.00 0.00 4.02
1357 1388 2.422479 TCTTATGTCTTCTCGGTGGTCG 59.578 50.000 0.00 0.00 40.90 4.79
1358 1389 1.830279 TATGTCTTCTCGGTGGTCGT 58.170 50.000 0.00 0.00 40.32 4.34
1422 1454 5.562248 CGATTGCAAAATGCTGAATTGTTTG 59.438 36.000 1.71 0.00 45.31 2.93
1474 1507 2.600731 CGACTGTTTACTGCTCTGAGG 58.399 52.381 6.83 0.00 0.00 3.86
1558 1591 4.029809 GCGCACCCCCTTACCTGT 62.030 66.667 0.30 0.00 0.00 4.00
1716 1915 8.786826 TGTGATTAATTCGACATCCTAAACTT 57.213 30.769 0.00 0.00 0.00 2.66
1765 1964 5.947228 TGAATCCACTGAAATTGACTGTC 57.053 39.130 0.00 0.00 0.00 3.51
1819 2018 2.872245 TGTAGTTTCAGACACTGCAAGC 59.128 45.455 5.12 0.00 37.60 4.01
1834 2033 4.406972 ACTGCAAGCTAGATGTTCTGGATA 59.593 41.667 0.00 0.00 37.60 2.59
1916 2117 5.163519 ACCAATCCTGTTTCACTTCACTTTG 60.164 40.000 0.00 0.00 0.00 2.77
1967 2168 2.983136 CTCTGCTGTGAGTGTAGAAACG 59.017 50.000 0.00 0.00 0.00 3.60
2180 2382 3.988517 GGTATAATCCGTGCAAGCTCTAC 59.011 47.826 0.00 0.00 0.00 2.59
2185 2387 2.772189 GTGCAAGCTCTACGCACG 59.228 61.111 12.78 0.00 45.69 5.34
2412 2614 3.249917 GAAGAAGAAGAAGCCAGTCTCG 58.750 50.000 0.00 0.00 0.00 4.04
2626 2830 6.820152 GTCGGTATTGGACACCTTATTTAAGT 59.180 38.462 0.00 0.00 34.56 2.24
2674 2879 2.093235 AGCTGCTCCTGGTCATAGTTTC 60.093 50.000 0.00 0.00 0.00 2.78
2682 2889 8.325787 TGCTCCTGGTCATAGTTTCTTTAATTA 58.674 33.333 0.00 0.00 0.00 1.40
2718 2925 3.256631 GGATCATCTGTGGCAAACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2723 2930 5.359576 TCATCTGTGGCAAACTTGTTAAACT 59.640 36.000 0.00 0.00 0.00 2.66
2779 2986 0.468226 TTGTGGTTTGGCGTCTCTCT 59.532 50.000 0.00 0.00 0.00 3.10
2786 2993 0.603569 TTGGCGTCTCTCTGTCCTTC 59.396 55.000 0.00 0.00 0.00 3.46
3016 3253 4.082408 TCAGGTGAACGATCGACAAACTAT 60.082 41.667 24.34 5.08 0.00 2.12
3081 3318 3.554934 ACAAGGATCTTCAACAGCAACA 58.445 40.909 0.00 0.00 0.00 3.33
3199 3436 2.753966 CCGAGCAATGCCTCCAACG 61.754 63.158 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.324830 CCTCCTTCTCCTCCTTCGGT 60.325 60.000 0.00 0.00 0.00 4.69
1 2 0.033011 TCCTCCTTCTCCTCCTTCGG 60.033 60.000 0.00 0.00 0.00 4.30
3 4 2.235155 GTTGTCCTCCTTCTCCTCCTTC 59.765 54.545 0.00 0.00 0.00 3.46
4 5 2.261729 GTTGTCCTCCTTCTCCTCCTT 58.738 52.381 0.00 0.00 0.00 3.36
5 6 1.893210 CGTTGTCCTCCTTCTCCTCCT 60.893 57.143 0.00 0.00 0.00 3.69
6 7 0.533032 CGTTGTCCTCCTTCTCCTCC 59.467 60.000 0.00 0.00 0.00 4.30
7 8 1.202817 GTCGTTGTCCTCCTTCTCCTC 59.797 57.143 0.00 0.00 0.00 3.71
8 9 1.258676 GTCGTTGTCCTCCTTCTCCT 58.741 55.000 0.00 0.00 0.00 3.69
9 10 0.109226 CGTCGTTGTCCTCCTTCTCC 60.109 60.000 0.00 0.00 0.00 3.71
10 11 0.109226 CCGTCGTTGTCCTCCTTCTC 60.109 60.000 0.00 0.00 0.00 2.87
11 12 1.965219 CCGTCGTTGTCCTCCTTCT 59.035 57.895 0.00 0.00 0.00 2.85
12 13 1.737008 GCCGTCGTTGTCCTCCTTC 60.737 63.158 0.00 0.00 0.00 3.46
13 14 2.342648 GCCGTCGTTGTCCTCCTT 59.657 61.111 0.00 0.00 0.00 3.36
14 15 4.052229 CGCCGTCGTTGTCCTCCT 62.052 66.667 0.00 0.00 0.00 3.69
15 16 3.966026 CTCGCCGTCGTTGTCCTCC 62.966 68.421 0.00 0.00 36.96 4.30
16 17 2.504244 CTCGCCGTCGTTGTCCTC 60.504 66.667 0.00 0.00 36.96 3.71
17 18 4.052229 CCTCGCCGTCGTTGTCCT 62.052 66.667 0.00 0.00 36.96 3.85
18 19 4.047059 TCCTCGCCGTCGTTGTCC 62.047 66.667 0.00 0.00 36.96 4.02
19 20 2.804090 GTCCTCGCCGTCGTTGTC 60.804 66.667 0.00 0.00 36.96 3.18
20 21 3.141522 TTGTCCTCGCCGTCGTTGT 62.142 57.895 0.00 0.00 36.96 3.32
21 22 2.355363 TTGTCCTCGCCGTCGTTG 60.355 61.111 0.00 0.00 36.96 4.10
22 23 2.355481 GTTGTCCTCGCCGTCGTT 60.355 61.111 0.00 0.00 36.96 3.85
23 24 3.264866 GAGTTGTCCTCGCCGTCGT 62.265 63.158 0.00 0.00 36.96 4.34
24 25 2.504244 GAGTTGTCCTCGCCGTCG 60.504 66.667 0.00 0.00 0.00 5.12
25 26 2.126031 GGAGTTGTCCTCGCCGTC 60.126 66.667 0.00 0.00 41.46 4.79
26 27 4.052229 CGGAGTTGTCCTCGCCGT 62.052 66.667 0.00 0.00 41.34 5.68
27 28 4.796231 CCGGAGTTGTCCTCGCCG 62.796 72.222 0.00 0.00 45.11 6.46
30 31 3.744719 TCGCCGGAGTTGTCCTCG 61.745 66.667 5.05 0.00 41.34 4.63
31 32 2.126031 GTCGCCGGAGTTGTCCTC 60.126 66.667 5.05 0.00 41.34 3.71
32 33 4.052229 CGTCGCCGGAGTTGTCCT 62.052 66.667 5.05 0.00 41.34 3.85
33 34 3.966026 CTCGTCGCCGGAGTTGTCC 62.966 68.421 5.05 0.00 39.88 4.02
34 35 2.504244 CTCGTCGCCGGAGTTGTC 60.504 66.667 5.05 0.00 33.95 3.18
35 36 4.719369 GCTCGTCGCCGGAGTTGT 62.719 66.667 5.05 0.00 33.95 3.32
36 37 4.717629 TGCTCGTCGCCGGAGTTG 62.718 66.667 5.05 0.00 38.05 3.16
37 38 4.421479 CTGCTCGTCGCCGGAGTT 62.421 66.667 5.05 0.00 38.05 3.01
39 40 3.815569 GATCTGCTCGTCGCCGGAG 62.816 68.421 5.05 0.00 38.05 4.63
40 41 3.889044 GATCTGCTCGTCGCCGGA 61.889 66.667 5.05 0.00 38.05 5.14
41 42 4.933064 GGATCTGCTCGTCGCCGG 62.933 72.222 0.00 0.00 38.05 6.13
43 44 4.933064 CCGGATCTGCTCGTCGCC 62.933 72.222 0.00 0.00 38.05 5.54
45 46 3.815569 GAGCCGGATCTGCTCGTCG 62.816 68.421 13.71 0.97 45.05 5.12
46 47 2.026879 GAGCCGGATCTGCTCGTC 59.973 66.667 13.71 2.21 45.05 4.20
50 51 2.569354 GGATCGAGCCGGATCTGCT 61.569 63.158 19.08 9.58 41.99 4.24
51 52 2.048690 GGATCGAGCCGGATCTGC 60.049 66.667 19.08 6.46 41.99 4.26
59 60 2.353607 CGCAGTACGGATCGAGCC 60.354 66.667 10.41 10.41 38.44 4.70
94 95 3.181967 CTTGCCGTCCTTCTCGCG 61.182 66.667 0.00 0.00 0.00 5.87
95 96 2.815647 CCTTGCCGTCCTTCTCGC 60.816 66.667 0.00 0.00 0.00 5.03
96 97 2.125512 CCCTTGCCGTCCTTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
97 98 2.436824 GCCCTTGCCGTCCTTCTC 60.437 66.667 0.00 0.00 0.00 2.87
98 99 4.394712 CGCCCTTGCCGTCCTTCT 62.395 66.667 0.00 0.00 0.00 2.85
126 127 3.136123 CATCCACGGCTGCCCTTG 61.136 66.667 14.12 10.48 0.00 3.61
127 128 2.905996 TTCATCCACGGCTGCCCTT 61.906 57.895 14.12 0.00 0.00 3.95
128 129 3.329889 TTCATCCACGGCTGCCCT 61.330 61.111 14.12 0.00 0.00 5.19
129 130 3.134127 GTTCATCCACGGCTGCCC 61.134 66.667 14.12 0.00 0.00 5.36
130 131 2.045926 AGTTCATCCACGGCTGCC 60.046 61.111 9.11 9.11 0.00 4.85
131 132 3.490890 GAGTTCATCCACGGCTGC 58.509 61.111 0.00 0.00 0.00 5.25
140 141 3.281727 TTGGCTATGGTGGAGTTCATC 57.718 47.619 0.00 0.00 0.00 2.92
141 142 3.245229 TGTTTGGCTATGGTGGAGTTCAT 60.245 43.478 0.00 0.00 0.00 2.57
142 143 2.107378 TGTTTGGCTATGGTGGAGTTCA 59.893 45.455 0.00 0.00 0.00 3.18
143 144 2.790433 TGTTTGGCTATGGTGGAGTTC 58.210 47.619 0.00 0.00 0.00 3.01
144 145 2.969821 TGTTTGGCTATGGTGGAGTT 57.030 45.000 0.00 0.00 0.00 3.01
145 146 2.726821 CATGTTTGGCTATGGTGGAGT 58.273 47.619 0.00 0.00 0.00 3.85
146 147 1.406539 GCATGTTTGGCTATGGTGGAG 59.593 52.381 0.00 0.00 0.00 3.86
147 148 1.473258 GCATGTTTGGCTATGGTGGA 58.527 50.000 0.00 0.00 0.00 4.02
148 149 0.461135 GGCATGTTTGGCTATGGTGG 59.539 55.000 0.00 0.00 44.68 4.61
157 158 6.092533 GGACTATCAAAATTTGGCATGTTTGG 59.907 38.462 5.83 5.92 32.91 3.28
158 159 6.183360 CGGACTATCAAAATTTGGCATGTTTG 60.183 38.462 5.83 10.24 33.26 2.93
159 160 5.868801 CGGACTATCAAAATTTGGCATGTTT 59.131 36.000 5.83 0.00 0.00 2.83
160 161 5.184864 TCGGACTATCAAAATTTGGCATGTT 59.815 36.000 5.83 0.00 0.00 2.71
161 162 4.704540 TCGGACTATCAAAATTTGGCATGT 59.295 37.500 5.83 0.82 0.00 3.21
162 163 5.247507 TCGGACTATCAAAATTTGGCATG 57.752 39.130 5.83 0.00 0.00 4.06
163 164 5.221303 CCATCGGACTATCAAAATTTGGCAT 60.221 40.000 5.83 0.00 0.00 4.40
164 165 4.097741 CCATCGGACTATCAAAATTTGGCA 59.902 41.667 5.83 0.00 0.00 4.92
165 166 4.610945 CCATCGGACTATCAAAATTTGGC 58.389 43.478 5.83 0.00 0.00 4.52
166 167 4.097741 TGCCATCGGACTATCAAAATTTGG 59.902 41.667 5.83 0.00 0.00 3.28
167 168 5.247507 TGCCATCGGACTATCAAAATTTG 57.752 39.130 0.00 0.00 0.00 2.32
168 169 5.360714 ACATGCCATCGGACTATCAAAATTT 59.639 36.000 0.00 0.00 0.00 1.82
169 170 4.889409 ACATGCCATCGGACTATCAAAATT 59.111 37.500 0.00 0.00 0.00 1.82
170 171 4.464008 ACATGCCATCGGACTATCAAAAT 58.536 39.130 0.00 0.00 0.00 1.82
171 172 3.884895 ACATGCCATCGGACTATCAAAA 58.115 40.909 0.00 0.00 0.00 2.44
172 173 3.558931 ACATGCCATCGGACTATCAAA 57.441 42.857 0.00 0.00 0.00 2.69
173 174 3.558931 AACATGCCATCGGACTATCAA 57.441 42.857 0.00 0.00 0.00 2.57
174 175 3.558931 AAACATGCCATCGGACTATCA 57.441 42.857 0.00 0.00 0.00 2.15
175 176 4.449068 CACTAAACATGCCATCGGACTATC 59.551 45.833 0.00 0.00 0.00 2.08
176 177 4.141711 ACACTAAACATGCCATCGGACTAT 60.142 41.667 0.00 0.00 0.00 2.12
177 178 3.196901 ACACTAAACATGCCATCGGACTA 59.803 43.478 0.00 0.00 0.00 2.59
178 179 2.027192 ACACTAAACATGCCATCGGACT 60.027 45.455 0.00 0.00 0.00 3.85
179 180 2.356135 ACACTAAACATGCCATCGGAC 58.644 47.619 0.00 0.00 0.00 4.79
180 181 2.779755 ACACTAAACATGCCATCGGA 57.220 45.000 0.00 0.00 0.00 4.55
181 182 3.309682 CACTACACTAAACATGCCATCGG 59.690 47.826 0.00 0.00 0.00 4.18
182 183 3.932710 ACACTACACTAAACATGCCATCG 59.067 43.478 0.00 0.00 0.00 3.84
183 184 4.935205 TCACACTACACTAAACATGCCATC 59.065 41.667 0.00 0.00 0.00 3.51
184 185 4.905429 TCACACTACACTAAACATGCCAT 58.095 39.130 0.00 0.00 0.00 4.40
185 186 4.344359 TCACACTACACTAAACATGCCA 57.656 40.909 0.00 0.00 0.00 4.92
186 187 4.094887 CCATCACACTACACTAAACATGCC 59.905 45.833 0.00 0.00 0.00 4.40
187 188 4.935205 TCCATCACACTACACTAAACATGC 59.065 41.667 0.00 0.00 0.00 4.06
188 189 6.166279 ACTCCATCACACTACACTAAACATG 58.834 40.000 0.00 0.00 0.00 3.21
189 190 6.360370 ACTCCATCACACTACACTAAACAT 57.640 37.500 0.00 0.00 0.00 2.71
190 191 5.801531 ACTCCATCACACTACACTAAACA 57.198 39.130 0.00 0.00 0.00 2.83
191 192 5.805994 GCTACTCCATCACACTACACTAAAC 59.194 44.000 0.00 0.00 0.00 2.01
192 193 5.105473 GGCTACTCCATCACACTACACTAAA 60.105 44.000 0.00 0.00 34.01 1.85
193 194 4.401519 GGCTACTCCATCACACTACACTAA 59.598 45.833 0.00 0.00 34.01 2.24
194 195 3.952323 GGCTACTCCATCACACTACACTA 59.048 47.826 0.00 0.00 34.01 2.74
195 196 2.761208 GGCTACTCCATCACACTACACT 59.239 50.000 0.00 0.00 34.01 3.55
196 197 2.479730 CGGCTACTCCATCACACTACAC 60.480 54.545 0.00 0.00 34.01 2.90
197 198 1.749063 CGGCTACTCCATCACACTACA 59.251 52.381 0.00 0.00 34.01 2.74
198 199 1.067212 CCGGCTACTCCATCACACTAC 59.933 57.143 0.00 0.00 34.01 2.73
199 200 1.399714 CCGGCTACTCCATCACACTA 58.600 55.000 0.00 0.00 34.01 2.74
200 201 1.330655 CCCGGCTACTCCATCACACT 61.331 60.000 0.00 0.00 34.01 3.55
201 202 1.144057 CCCGGCTACTCCATCACAC 59.856 63.158 0.00 0.00 34.01 3.82
202 203 2.731571 GCCCGGCTACTCCATCACA 61.732 63.158 0.71 0.00 34.01 3.58
203 204 2.109181 GCCCGGCTACTCCATCAC 59.891 66.667 0.71 0.00 34.01 3.06
204 205 1.344953 ATTGCCCGGCTACTCCATCA 61.345 55.000 11.61 0.00 34.01 3.07
205 206 0.886490 CATTGCCCGGCTACTCCATC 60.886 60.000 11.61 0.00 34.01 3.51
206 207 1.149174 CATTGCCCGGCTACTCCAT 59.851 57.895 11.61 0.00 34.01 3.41
207 208 2.589540 CATTGCCCGGCTACTCCA 59.410 61.111 11.61 0.00 34.01 3.86
208 209 2.902343 GCATTGCCCGGCTACTCC 60.902 66.667 11.61 0.00 0.00 3.85
209 210 3.272334 CGCATTGCCCGGCTACTC 61.272 66.667 11.61 0.00 0.00 2.59
210 211 4.096003 ACGCATTGCCCGGCTACT 62.096 61.111 11.61 0.00 0.00 2.57
211 212 3.876198 CACGCATTGCCCGGCTAC 61.876 66.667 11.61 0.00 0.00 3.58
212 213 4.402528 ACACGCATTGCCCGGCTA 62.403 61.111 11.61 2.84 0.00 3.93
217 218 4.759096 GACGCACACGCATTGCCC 62.759 66.667 2.41 0.00 45.53 5.36
219 220 3.367051 ATCGACGCACACGCATTGC 62.367 57.895 0.00 0.00 45.53 3.56
220 221 1.578367 CATCGACGCACACGCATTG 60.578 57.895 0.00 0.00 45.53 2.82
221 222 0.734597 TACATCGACGCACACGCATT 60.735 50.000 0.00 0.00 45.53 3.56
222 223 1.139816 CTACATCGACGCACACGCAT 61.140 55.000 0.00 0.00 45.53 4.73
223 224 1.799916 CTACATCGACGCACACGCA 60.800 57.895 0.00 0.00 45.53 5.24
224 225 1.342082 AACTACATCGACGCACACGC 61.342 55.000 0.00 0.00 45.53 5.34
226 227 0.093026 GCAACTACATCGACGCACAC 59.907 55.000 0.00 0.00 0.00 3.82
227 228 0.319125 TGCAACTACATCGACGCACA 60.319 50.000 0.00 0.00 0.00 4.57
228 229 0.999406 ATGCAACTACATCGACGCAC 59.001 50.000 0.00 0.00 31.22 5.34
229 230 0.998669 CATGCAACTACATCGACGCA 59.001 50.000 0.00 0.00 0.00 5.24
230 231 1.256376 CTCATGCAACTACATCGACGC 59.744 52.381 0.00 0.00 0.00 5.19
231 232 2.530177 ACTCATGCAACTACATCGACG 58.470 47.619 0.00 0.00 0.00 5.12
232 233 4.152402 ACAAACTCATGCAACTACATCGAC 59.848 41.667 0.00 0.00 0.00 4.20
233 234 4.314961 ACAAACTCATGCAACTACATCGA 58.685 39.130 0.00 0.00 0.00 3.59
234 235 4.668576 ACAAACTCATGCAACTACATCG 57.331 40.909 0.00 0.00 0.00 3.84
235 236 6.316140 TCCATACAAACTCATGCAACTACATC 59.684 38.462 0.00 0.00 0.00 3.06
236 237 6.179756 TCCATACAAACTCATGCAACTACAT 58.820 36.000 0.00 0.00 0.00 2.29
237 238 5.555966 TCCATACAAACTCATGCAACTACA 58.444 37.500 0.00 0.00 0.00 2.74
238 239 6.683974 ATCCATACAAACTCATGCAACTAC 57.316 37.500 0.00 0.00 0.00 2.73
239 240 7.392953 TCAAATCCATACAAACTCATGCAACTA 59.607 33.333 0.00 0.00 0.00 2.24
240 241 6.209192 TCAAATCCATACAAACTCATGCAACT 59.791 34.615 0.00 0.00 0.00 3.16
241 242 6.389091 TCAAATCCATACAAACTCATGCAAC 58.611 36.000 0.00 0.00 0.00 4.17
242 243 6.433716 TCTCAAATCCATACAAACTCATGCAA 59.566 34.615 0.00 0.00 0.00 4.08
243 244 5.945191 TCTCAAATCCATACAAACTCATGCA 59.055 36.000 0.00 0.00 0.00 3.96
244 245 6.441093 TCTCAAATCCATACAAACTCATGC 57.559 37.500 0.00 0.00 0.00 4.06
246 247 9.293404 CCATATCTCAAATCCATACAAACTCAT 57.707 33.333 0.00 0.00 0.00 2.90
247 248 8.274322 ACCATATCTCAAATCCATACAAACTCA 58.726 33.333 0.00 0.00 0.00 3.41
248 249 8.682936 ACCATATCTCAAATCCATACAAACTC 57.317 34.615 0.00 0.00 0.00 3.01
255 256 9.964354 CCTCAATTACCATATCTCAAATCCATA 57.036 33.333 0.00 0.00 0.00 2.74
256 257 8.451245 ACCTCAATTACCATATCTCAAATCCAT 58.549 33.333 0.00 0.00 0.00 3.41
257 258 7.720957 CACCTCAATTACCATATCTCAAATCCA 59.279 37.037 0.00 0.00 0.00 3.41
258 259 7.721399 ACACCTCAATTACCATATCTCAAATCC 59.279 37.037 0.00 0.00 0.00 3.01
259 260 8.682936 ACACCTCAATTACCATATCTCAAATC 57.317 34.615 0.00 0.00 0.00 2.17
260 261 7.721399 GGACACCTCAATTACCATATCTCAAAT 59.279 37.037 0.00 0.00 0.00 2.32
261 262 7.054124 GGACACCTCAATTACCATATCTCAAA 58.946 38.462 0.00 0.00 0.00 2.69
262 263 6.591935 GGACACCTCAATTACCATATCTCAA 58.408 40.000 0.00 0.00 0.00 3.02
263 264 5.221441 CGGACACCTCAATTACCATATCTCA 60.221 44.000 0.00 0.00 0.00 3.27
264 265 5.230942 CGGACACCTCAATTACCATATCTC 58.769 45.833 0.00 0.00 0.00 2.75
265 266 4.040461 CCGGACACCTCAATTACCATATCT 59.960 45.833 0.00 0.00 0.00 1.98
266 267 4.039973 TCCGGACACCTCAATTACCATATC 59.960 45.833 0.00 0.00 0.00 1.63
267 268 3.971305 TCCGGACACCTCAATTACCATAT 59.029 43.478 0.00 0.00 0.00 1.78
268 269 3.376636 TCCGGACACCTCAATTACCATA 58.623 45.455 0.00 0.00 0.00 2.74
269 270 2.193127 TCCGGACACCTCAATTACCAT 58.807 47.619 0.00 0.00 0.00 3.55
270 271 1.646912 TCCGGACACCTCAATTACCA 58.353 50.000 0.00 0.00 0.00 3.25
271 272 2.093128 ACATCCGGACACCTCAATTACC 60.093 50.000 6.12 0.00 0.00 2.85
272 273 2.936498 CACATCCGGACACCTCAATTAC 59.064 50.000 6.12 0.00 0.00 1.89
273 274 2.093181 CCACATCCGGACACCTCAATTA 60.093 50.000 6.12 0.00 0.00 1.40
274 275 1.340017 CCACATCCGGACACCTCAATT 60.340 52.381 6.12 0.00 0.00 2.32
275 276 0.253044 CCACATCCGGACACCTCAAT 59.747 55.000 6.12 0.00 0.00 2.57
276 277 0.834261 TCCACATCCGGACACCTCAA 60.834 55.000 6.12 0.00 0.00 3.02
277 278 0.617535 ATCCACATCCGGACACCTCA 60.618 55.000 6.12 0.00 38.07 3.86
278 279 0.541863 AATCCACATCCGGACACCTC 59.458 55.000 6.12 0.00 38.07 3.85
279 280 0.253044 CAATCCACATCCGGACACCT 59.747 55.000 6.12 0.00 38.07 4.00
280 281 0.251916 TCAATCCACATCCGGACACC 59.748 55.000 6.12 0.00 38.07 4.16
281 282 2.107950 TTCAATCCACATCCGGACAC 57.892 50.000 6.12 0.00 38.07 3.67
282 283 3.364460 AATTCAATCCACATCCGGACA 57.636 42.857 6.12 0.00 38.07 4.02
283 284 4.718940 AAAATTCAATCCACATCCGGAC 57.281 40.909 6.12 0.00 38.07 4.79
302 303 1.214175 TGACTGGGCACTCCTCAAAAA 59.786 47.619 0.00 0.00 36.20 1.94
303 304 0.843309 TGACTGGGCACTCCTCAAAA 59.157 50.000 0.00 0.00 36.20 2.44
304 305 0.397941 CTGACTGGGCACTCCTCAAA 59.602 55.000 0.00 0.00 36.20 2.69
305 306 0.764369 ACTGACTGGGCACTCCTCAA 60.764 55.000 0.00 0.00 36.20 3.02
306 307 1.152247 ACTGACTGGGCACTCCTCA 60.152 57.895 0.00 0.00 36.20 3.86
307 308 1.294780 CACTGACTGGGCACTCCTC 59.705 63.158 0.00 0.00 36.20 3.71
308 309 2.888447 GCACTGACTGGGCACTCCT 61.888 63.158 1.07 0.00 46.29 3.69
309 310 2.359230 GCACTGACTGGGCACTCC 60.359 66.667 1.07 0.00 46.29 3.85
317 318 4.394712 GTCCGGGGGCACTGACTG 62.395 72.222 0.00 0.00 0.00 3.51
356 357 2.686816 AAATCCGGCCGCTCAAACG 61.687 57.895 22.85 3.88 0.00 3.60
357 358 1.154035 CAAATCCGGCCGCTCAAAC 60.154 57.895 22.85 0.00 0.00 2.93
358 359 2.988688 GCAAATCCGGCCGCTCAAA 61.989 57.895 22.85 1.78 0.00 2.69
359 360 3.439540 GCAAATCCGGCCGCTCAA 61.440 61.111 22.85 4.72 0.00 3.02
366 367 2.885113 GGACTTGGCAAATCCGGC 59.115 61.111 12.45 0.00 37.80 6.13
369 370 2.396590 TAGACGGACTTGGCAAATCC 57.603 50.000 17.46 17.46 0.00 3.01
370 371 4.945246 TCTATAGACGGACTTGGCAAATC 58.055 43.478 0.00 0.00 0.00 2.17
371 372 5.300752 CATCTATAGACGGACTTGGCAAAT 58.699 41.667 4.10 0.00 0.00 2.32
372 373 4.693283 CATCTATAGACGGACTTGGCAAA 58.307 43.478 4.10 0.00 0.00 3.68
373 374 3.492656 GCATCTATAGACGGACTTGGCAA 60.493 47.826 4.10 0.00 0.00 4.52
374 375 2.035961 GCATCTATAGACGGACTTGGCA 59.964 50.000 4.10 0.00 0.00 4.92
375 376 2.297597 AGCATCTATAGACGGACTTGGC 59.702 50.000 4.10 0.00 0.00 4.52
376 377 4.167554 GAGCATCTATAGACGGACTTGG 57.832 50.000 4.10 0.00 0.00 3.61
391 392 3.462021 GTCCAACTACCATCAGAGCATC 58.538 50.000 0.00 0.00 0.00 3.91
392 393 2.159043 CGTCCAACTACCATCAGAGCAT 60.159 50.000 0.00 0.00 0.00 3.79
393 394 1.204704 CGTCCAACTACCATCAGAGCA 59.795 52.381 0.00 0.00 0.00 4.26
394 395 1.927895 CGTCCAACTACCATCAGAGC 58.072 55.000 0.00 0.00 0.00 4.09
395 396 1.204704 TGCGTCCAACTACCATCAGAG 59.795 52.381 0.00 0.00 0.00 3.35
396 397 1.067142 GTGCGTCCAACTACCATCAGA 60.067 52.381 0.00 0.00 0.00 3.27
397 398 1.359848 GTGCGTCCAACTACCATCAG 58.640 55.000 0.00 0.00 0.00 2.90
401 402 3.552219 TGGTGCGTCCAACTACCA 58.448 55.556 0.00 0.00 44.12 3.25
414 415 7.490962 TTAATTAAGAGTGTGTCAAGTGGTG 57.509 36.000 0.00 0.00 0.00 4.17
435 436 7.974504 ACCTCCTCAAGAGTCACTTTAATTAA 58.025 34.615 0.00 0.00 41.47 1.40
437 438 6.441088 ACCTCCTCAAGAGTCACTTTAATT 57.559 37.500 0.00 0.00 41.47 1.40
439 440 5.221661 GGAACCTCCTCAAGAGTCACTTTAA 60.222 44.000 0.00 0.00 41.47 1.52
440 441 4.283722 GGAACCTCCTCAAGAGTCACTTTA 59.716 45.833 0.00 0.00 41.47 1.85
457 458 1.632965 GGATACCCCTTGCGGAACCT 61.633 60.000 0.00 0.00 0.00 3.50
459 460 1.912971 AGGATACCCCTTGCGGAAC 59.087 57.895 0.00 0.00 44.85 3.62
546 548 2.381665 CTTCCACGCGTCCGCAAAAA 62.382 55.000 9.86 0.00 42.06 1.94
584 586 1.138247 GAGCTTCATTTGCAGCCCG 59.862 57.895 0.00 0.00 34.84 6.13
585 587 1.138247 CGAGCTTCATTTGCAGCCC 59.862 57.895 0.00 0.00 34.84 5.19
588 590 0.098376 GCCTCGAGCTTCATTTGCAG 59.902 55.000 6.99 0.00 38.99 4.41
589 591 1.308069 GGCCTCGAGCTTCATTTGCA 61.308 55.000 6.99 0.00 43.05 4.08
590 592 1.431036 GGCCTCGAGCTTCATTTGC 59.569 57.895 6.99 1.89 43.05 3.68
591 593 0.740868 TCGGCCTCGAGCTTCATTTG 60.741 55.000 6.99 0.00 40.88 2.32
713 732 1.209127 GCCACGTCAATTGGTTCCG 59.791 57.895 5.42 5.97 36.40 4.30
714 733 1.209127 CGCCACGTCAATTGGTTCC 59.791 57.895 5.42 0.00 36.40 3.62
718 737 1.434555 TTCTACGCCACGTCAATTGG 58.565 50.000 5.42 0.00 41.54 3.16
800 819 1.789523 CCTTCTTACGATCTCCCCCA 58.210 55.000 0.00 0.00 0.00 4.96
1149 1175 4.353191 AGATAAATGGCAGATCTGGGATGT 59.647 41.667 23.89 0.00 0.00 3.06
1151 1177 4.018597 GGAGATAAATGGCAGATCTGGGAT 60.019 45.833 23.89 0.00 30.01 3.85
1152 1178 3.328931 GGAGATAAATGGCAGATCTGGGA 59.671 47.826 23.89 0.00 30.01 4.37
1209 1235 0.317479 AGCCACACGGTGACTAAGAC 59.683 55.000 16.29 0.00 35.23 3.01
1210 1236 1.045407 AAGCCACACGGTGACTAAGA 58.955 50.000 16.29 0.00 35.23 2.10
1211 1237 1.148310 CAAGCCACACGGTGACTAAG 58.852 55.000 16.29 2.61 35.23 2.18
1212 1238 0.882927 GCAAGCCACACGGTGACTAA 60.883 55.000 16.29 0.00 35.23 2.24
1213 1239 1.301401 GCAAGCCACACGGTGACTA 60.301 57.895 16.29 0.00 35.23 2.59
1214 1240 2.591715 GCAAGCCACACGGTGACT 60.592 61.111 16.29 6.22 35.23 3.41
1267 1293 1.800586 GTATGATGCGCAATGGTCGAT 59.199 47.619 17.11 6.55 0.00 3.59
1268 1294 1.217001 GTATGATGCGCAATGGTCGA 58.783 50.000 17.11 0.00 0.00 4.20
1330 1360 6.051717 CCACCGAGAAGACATAAGATGATTT 58.948 40.000 0.00 0.00 0.00 2.17
1356 1387 9.433317 GAACCATGATATGTTGTTACAATTACG 57.567 33.333 0.00 0.00 37.91 3.18
1558 1591 2.552743 CTCAGGTACTCGTGACACAAGA 59.447 50.000 6.37 0.00 34.60 3.02
1819 2018 4.081972 CACGGGGATATCCAGAACATCTAG 60.082 50.000 23.27 5.52 37.91 2.43
1834 2033 1.077501 CACAAGGATGCACGGGGAT 60.078 57.895 0.00 0.00 0.00 3.85
1916 2117 3.944087 AGGAATACAAGAAGTCACAGCC 58.056 45.455 0.00 0.00 0.00 4.85
2090 2292 5.109210 TGCTCAGATTATCAACGATCGTTT 58.891 37.500 29.89 19.31 36.00 3.60
2180 2382 1.800399 ACAAAACAAACGTACGTGCG 58.200 45.000 23.57 24.57 37.94 5.34
2185 2387 8.057156 ACTTTTGTGAAAACAAAACAAACGTAC 58.943 29.630 11.61 0.00 41.57 3.67
2412 2614 3.971245 TCCCTCTTGAGCTTCTTCTTC 57.029 47.619 0.00 0.00 0.00 2.87
2542 2746 2.031012 CAACACCGCAGCTCCAGA 59.969 61.111 0.00 0.00 0.00 3.86
2652 2856 1.577736 ACTATGACCAGGAGCAGCTT 58.422 50.000 0.00 0.00 0.00 3.74
2674 2879 8.846943 ATCCCCAGCAAAGTTTTTAATTAAAG 57.153 30.769 10.40 0.39 0.00 1.85
2682 2889 4.020839 CAGATGATCCCCAGCAAAGTTTTT 60.021 41.667 0.00 0.00 32.59 1.94
2718 2925 2.943690 TGCAAACGGCTACACAAGTTTA 59.056 40.909 0.00 0.00 45.15 2.01
2723 2930 1.384525 AACTGCAAACGGCTACACAA 58.615 45.000 0.00 0.00 45.15 3.33
2779 2986 3.662759 AACCCTTTGTTGAGAAGGACA 57.337 42.857 4.52 0.00 45.25 4.02
2786 2993 5.610398 AGCCAATAAAAACCCTTTGTTGAG 58.390 37.500 7.90 1.64 37.23 3.02
2878 3088 0.256177 TGTGTGTGTTGGGTTGGCTA 59.744 50.000 0.00 0.00 0.00 3.93
3016 3253 3.895041 TGATGCGGATATGGTCTCAGTTA 59.105 43.478 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.