Multiple sequence alignment - TraesCS2D01G290300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G290300 chr2D 100.000 3345 0 0 1 3345 372596041 372599385 0.000000e+00 6178.0
1 TraesCS2D01G290300 chr2D 100.000 92 0 0 3676 3767 372599716 372599807 1.800000e-38 171.0
2 TraesCS2D01G290300 chr2D 85.185 108 12 4 612 718 555170178 555170282 1.430000e-19 108.0
3 TraesCS2D01G290300 chr2B 93.983 2626 110 23 633 3244 442084828 442087419 0.000000e+00 3930.0
4 TraesCS2D01G290300 chr2B 82.178 1515 258 9 1249 2754 763091603 763090092 0.000000e+00 1291.0
5 TraesCS2D01G290300 chr2A 93.145 2232 90 14 897 3097 503632952 503630753 0.000000e+00 3216.0
6 TraesCS2D01G290300 chr1B 77.561 205 34 8 1 198 100639443 100639642 3.080000e-21 113.0
7 TraesCS2D01G290300 chr6B 85.542 83 9 3 609 689 487790221 487790140 2.410000e-12 84.2
8 TraesCS2D01G290300 chr6B 93.617 47 2 1 779 824 484522988 484523034 6.750000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G290300 chr2D 372596041 372599807 3766 False 3174.5 6178 100.000 1 3767 2 chr2D.!!$F2 3766
1 TraesCS2D01G290300 chr2B 442084828 442087419 2591 False 3930.0 3930 93.983 633 3244 1 chr2B.!!$F1 2611
2 TraesCS2D01G290300 chr2B 763090092 763091603 1511 True 1291.0 1291 82.178 1249 2754 1 chr2B.!!$R1 1505
3 TraesCS2D01G290300 chr2A 503630753 503632952 2199 True 3216.0 3216 93.145 897 3097 1 chr2A.!!$R1 2200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 558 0.248012 TGGGTCGCACGTGATAATGT 59.752 50.0 22.23 0.0 0.00 2.71 F
574 575 0.394938 TGTGCTTCAGCCCGTTAAGA 59.605 50.0 0.00 0.0 41.18 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2304 2341 1.255667 TGACGAAGGCCTGGAGGTAC 61.256 60.0 5.69 0.0 37.57 3.34 R
3000 3044 0.663269 TGTGACTGTGCTACTTCGCG 60.663 55.0 0.00 0.0 0.00 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.921969 CACAAAATGTGCGCTTTTTGA 57.078 38.095 37.40 6.75 45.10 2.69
32 33 4.256140 CACAAAATGTGCGCTTTTTGAA 57.744 36.364 37.40 6.07 45.10 2.69
33 34 4.645956 CACAAAATGTGCGCTTTTTGAAA 58.354 34.783 37.40 5.38 45.10 2.69
34 35 5.084722 CACAAAATGTGCGCTTTTTGAAAA 58.915 33.333 37.40 4.71 45.10 2.29
35 36 5.738225 CACAAAATGTGCGCTTTTTGAAAAT 59.262 32.000 37.40 22.91 45.10 1.82
36 37 6.904011 CACAAAATGTGCGCTTTTTGAAAATA 59.096 30.769 37.40 3.55 45.10 1.40
37 38 7.587028 CACAAAATGTGCGCTTTTTGAAAATAT 59.413 29.630 37.40 22.15 45.10 1.28
38 39 7.587028 ACAAAATGTGCGCTTTTTGAAAATATG 59.413 29.630 37.40 21.39 45.10 1.78
39 40 4.644044 TGTGCGCTTTTTGAAAATATGC 57.356 36.364 9.73 0.00 0.00 3.14
40 41 4.053983 TGTGCGCTTTTTGAAAATATGCA 58.946 34.783 9.73 6.99 31.38 3.96
41 42 4.509230 TGTGCGCTTTTTGAAAATATGCAA 59.491 33.333 9.73 0.00 33.83 4.08
42 43 5.074791 GTGCGCTTTTTGAAAATATGCAAG 58.925 37.500 9.73 0.00 33.83 4.01
43 44 4.987285 TGCGCTTTTTGAAAATATGCAAGA 59.013 33.333 9.73 0.00 31.12 3.02
44 45 5.464722 TGCGCTTTTTGAAAATATGCAAGAA 59.535 32.000 9.73 0.00 31.12 2.52
45 46 6.147492 TGCGCTTTTTGAAAATATGCAAGAAT 59.853 30.769 9.73 0.00 31.12 2.40
46 47 7.330454 TGCGCTTTTTGAAAATATGCAAGAATA 59.670 29.630 9.73 0.00 31.12 1.75
47 48 8.167985 GCGCTTTTTGAAAATATGCAAGAATAA 58.832 29.630 0.00 0.00 0.00 1.40
62 63 8.291191 TGCAAGAATAAACATATGATTGTGGA 57.709 30.769 10.38 0.00 0.00 4.02
63 64 8.747471 TGCAAGAATAAACATATGATTGTGGAA 58.253 29.630 10.38 0.00 0.00 3.53
64 65 9.754382 GCAAGAATAAACATATGATTGTGGAAT 57.246 29.630 10.38 0.00 0.00 3.01
83 84 9.921637 TGTGGAATTTTCATAAAAGTATGGTTC 57.078 29.630 0.00 0.00 38.15 3.62
84 85 9.366216 GTGGAATTTTCATAAAAGTATGGTTCC 57.634 33.333 0.00 0.00 38.15 3.62
85 86 9.320295 TGGAATTTTCATAAAAGTATGGTTCCT 57.680 29.630 11.34 0.00 38.15 3.36
89 90 9.675464 ATTTTCATAAAAGTATGGTTCCTACGA 57.325 29.630 0.00 0.00 38.15 3.43
90 91 9.504708 TTTTCATAAAAGTATGGTTCCTACGAA 57.495 29.630 0.00 0.00 38.15 3.85
91 92 8.712285 TTCATAAAAGTATGGTTCCTACGAAG 57.288 34.615 0.00 0.00 38.15 3.79
92 93 7.270047 TCATAAAAGTATGGTTCCTACGAAGG 58.730 38.462 0.00 0.00 39.85 3.46
93 94 7.124599 TCATAAAAGTATGGTTCCTACGAAGGA 59.875 37.037 0.00 0.00 42.48 3.36
106 107 3.982576 ACGAAGGAATGGTTTTGTGTC 57.017 42.857 0.00 0.00 0.00 3.67
107 108 3.283751 ACGAAGGAATGGTTTTGTGTCA 58.716 40.909 0.00 0.00 0.00 3.58
108 109 3.888930 ACGAAGGAATGGTTTTGTGTCAT 59.111 39.130 0.00 0.00 0.00 3.06
109 110 4.340950 ACGAAGGAATGGTTTTGTGTCATT 59.659 37.500 0.00 0.00 34.27 2.57
110 111 5.163457 ACGAAGGAATGGTTTTGTGTCATTT 60.163 36.000 0.00 0.00 32.05 2.32
111 112 5.175491 CGAAGGAATGGTTTTGTGTCATTTG 59.825 40.000 0.00 0.00 32.05 2.32
112 113 5.612725 AGGAATGGTTTTGTGTCATTTGT 57.387 34.783 0.00 0.00 32.05 2.83
113 114 6.723298 AGGAATGGTTTTGTGTCATTTGTA 57.277 33.333 0.00 0.00 32.05 2.41
114 115 7.301868 AGGAATGGTTTTGTGTCATTTGTAT 57.698 32.000 0.00 0.00 32.05 2.29
115 116 7.734942 AGGAATGGTTTTGTGTCATTTGTATT 58.265 30.769 0.00 0.00 32.05 1.89
116 117 8.865090 AGGAATGGTTTTGTGTCATTTGTATTA 58.135 29.630 0.00 0.00 32.05 0.98
117 118 8.921670 GGAATGGTTTTGTGTCATTTGTATTAC 58.078 33.333 0.00 0.00 32.05 1.89
118 119 8.825667 AATGGTTTTGTGTCATTTGTATTACC 57.174 30.769 0.00 0.00 0.00 2.85
119 120 7.589958 TGGTTTTGTGTCATTTGTATTACCT 57.410 32.000 0.00 0.00 0.00 3.08
120 121 8.012957 TGGTTTTGTGTCATTTGTATTACCTT 57.987 30.769 0.00 0.00 0.00 3.50
121 122 8.138712 TGGTTTTGTGTCATTTGTATTACCTTC 58.861 33.333 0.00 0.00 0.00 3.46
122 123 8.138712 GGTTTTGTGTCATTTGTATTACCTTCA 58.861 33.333 0.00 0.00 0.00 3.02
123 124 9.522804 GTTTTGTGTCATTTGTATTACCTTCAA 57.477 29.630 0.00 0.00 0.00 2.69
125 126 9.743057 TTTGTGTCATTTGTATTACCTTCAAAG 57.257 29.630 0.00 0.00 35.14 2.77
126 127 8.684386 TGTGTCATTTGTATTACCTTCAAAGA 57.316 30.769 0.00 0.00 35.14 2.52
127 128 9.126151 TGTGTCATTTGTATTACCTTCAAAGAA 57.874 29.630 0.00 0.00 35.14 2.52
128 129 9.612620 GTGTCATTTGTATTACCTTCAAAGAAG 57.387 33.333 0.00 0.00 35.14 2.85
129 130 9.567776 TGTCATTTGTATTACCTTCAAAGAAGA 57.432 29.630 8.26 0.00 35.14 2.87
193 194 7.286215 AGGAAGAATGAATGAATAGCATTGG 57.714 36.000 0.00 0.00 46.90 3.16
194 195 6.837568 AGGAAGAATGAATGAATAGCATTGGT 59.162 34.615 0.00 0.00 46.90 3.67
195 196 8.000709 AGGAAGAATGAATGAATAGCATTGGTA 58.999 33.333 0.00 0.00 46.90 3.25
196 197 8.800332 GGAAGAATGAATGAATAGCATTGGTAT 58.200 33.333 2.53 2.53 46.90 2.73
253 254 4.880886 AAAAACTTGCAGACCAATTTGC 57.119 36.364 0.00 0.00 40.67 3.68
259 260 3.138884 TGCAGACCAATTTGCACTAGA 57.861 42.857 0.00 0.00 44.72 2.43
260 261 3.485394 TGCAGACCAATTTGCACTAGAA 58.515 40.909 0.00 0.00 44.72 2.10
261 262 4.081406 TGCAGACCAATTTGCACTAGAAT 58.919 39.130 0.00 0.00 44.72 2.40
262 263 4.523943 TGCAGACCAATTTGCACTAGAATT 59.476 37.500 0.00 0.00 44.72 2.17
263 264 5.709631 TGCAGACCAATTTGCACTAGAATTA 59.290 36.000 0.00 0.00 44.72 1.40
264 265 6.377996 TGCAGACCAATTTGCACTAGAATTAT 59.622 34.615 0.00 0.00 44.72 1.28
265 266 6.694411 GCAGACCAATTTGCACTAGAATTATG 59.306 38.462 0.00 0.00 40.02 1.90
266 267 7.415541 GCAGACCAATTTGCACTAGAATTATGA 60.416 37.037 0.00 0.00 40.02 2.15
267 268 8.627403 CAGACCAATTTGCACTAGAATTATGAT 58.373 33.333 0.00 0.00 0.00 2.45
268 269 9.193806 AGACCAATTTGCACTAGAATTATGATT 57.806 29.630 0.00 0.00 0.00 2.57
269 270 9.807649 GACCAATTTGCACTAGAATTATGATTT 57.192 29.630 0.00 0.00 0.00 2.17
336 337 7.883229 CACTTATTGTGTAGTATGTGTGTGA 57.117 36.000 0.00 0.00 41.53 3.58
337 338 8.305441 CACTTATTGTGTAGTATGTGTGTGAA 57.695 34.615 0.00 0.00 41.53 3.18
338 339 8.935844 CACTTATTGTGTAGTATGTGTGTGAAT 58.064 33.333 0.00 0.00 41.53 2.57
358 359 9.961264 TGTGAATATATTTACACTTACCCAACA 57.039 29.630 16.70 0.00 32.30 3.33
364 365 8.887264 ATATTTACACTTACCCAACATCCAAA 57.113 30.769 0.00 0.00 0.00 3.28
365 366 7.604657 ATTTACACTTACCCAACATCCAAAA 57.395 32.000 0.00 0.00 0.00 2.44
366 367 7.419711 TTTACACTTACCCAACATCCAAAAA 57.580 32.000 0.00 0.00 0.00 1.94
367 368 7.604657 TTACACTTACCCAACATCCAAAAAT 57.395 32.000 0.00 0.00 0.00 1.82
368 369 8.707796 TTACACTTACCCAACATCCAAAAATA 57.292 30.769 0.00 0.00 0.00 1.40
369 370 6.988522 ACACTTACCCAACATCCAAAAATAC 58.011 36.000 0.00 0.00 0.00 1.89
370 371 6.551601 ACACTTACCCAACATCCAAAAATACA 59.448 34.615 0.00 0.00 0.00 2.29
371 372 6.866248 CACTTACCCAACATCCAAAAATACAC 59.134 38.462 0.00 0.00 0.00 2.90
372 373 6.551601 ACTTACCCAACATCCAAAAATACACA 59.448 34.615 0.00 0.00 0.00 3.72
373 374 5.878406 ACCCAACATCCAAAAATACACAA 57.122 34.783 0.00 0.00 0.00 3.33
374 375 6.240549 ACCCAACATCCAAAAATACACAAA 57.759 33.333 0.00 0.00 0.00 2.83
375 376 6.653989 ACCCAACATCCAAAAATACACAAAA 58.346 32.000 0.00 0.00 0.00 2.44
376 377 6.540551 ACCCAACATCCAAAAATACACAAAAC 59.459 34.615 0.00 0.00 0.00 2.43
377 378 6.540189 CCCAACATCCAAAAATACACAAAACA 59.460 34.615 0.00 0.00 0.00 2.83
378 379 7.254727 CCCAACATCCAAAAATACACAAAACAG 60.255 37.037 0.00 0.00 0.00 3.16
379 380 7.493971 CCAACATCCAAAAATACACAAAACAGA 59.506 33.333 0.00 0.00 0.00 3.41
380 381 8.877779 CAACATCCAAAAATACACAAAACAGAA 58.122 29.630 0.00 0.00 0.00 3.02
381 382 9.442047 AACATCCAAAAATACACAAAACAGAAA 57.558 25.926 0.00 0.00 0.00 2.52
382 383 9.442047 ACATCCAAAAATACACAAAACAGAAAA 57.558 25.926 0.00 0.00 0.00 2.29
383 384 9.701355 CATCCAAAAATACACAAAACAGAAAAC 57.299 29.630 0.00 0.00 0.00 2.43
384 385 9.665719 ATCCAAAAATACACAAAACAGAAAACT 57.334 25.926 0.00 0.00 0.00 2.66
416 417 9.275398 TCAACTAATAAAGAAAACTAAAGCGGA 57.725 29.630 0.00 0.00 0.00 5.54
429 430 9.811995 AAAACTAAAGCGGATAAAAGAAAAAGT 57.188 25.926 0.00 0.00 0.00 2.66
430 431 8.797266 AACTAAAGCGGATAAAAGAAAAAGTG 57.203 30.769 0.00 0.00 0.00 3.16
431 432 6.861572 ACTAAAGCGGATAAAAGAAAAAGTGC 59.138 34.615 0.00 0.00 0.00 4.40
432 433 4.846779 AGCGGATAAAAGAAAAAGTGCA 57.153 36.364 0.00 0.00 0.00 4.57
433 434 5.195001 AGCGGATAAAAGAAAAAGTGCAA 57.805 34.783 0.00 0.00 0.00 4.08
434 435 5.596845 AGCGGATAAAAGAAAAAGTGCAAA 58.403 33.333 0.00 0.00 0.00 3.68
435 436 6.045955 AGCGGATAAAAGAAAAAGTGCAAAA 58.954 32.000 0.00 0.00 0.00 2.44
436 437 6.536941 AGCGGATAAAAGAAAAAGTGCAAAAA 59.463 30.769 0.00 0.00 0.00 1.94
437 438 7.226523 AGCGGATAAAAGAAAAAGTGCAAAAAT 59.773 29.630 0.00 0.00 0.00 1.82
438 439 8.491950 GCGGATAAAAGAAAAAGTGCAAAAATA 58.508 29.630 0.00 0.00 0.00 1.40
535 536 6.381498 AAAAACAAAGGAAGAAAGGGGAAA 57.619 33.333 0.00 0.00 0.00 3.13
536 537 5.614324 AAACAAAGGAAGAAAGGGGAAAG 57.386 39.130 0.00 0.00 0.00 2.62
537 538 2.965831 ACAAAGGAAGAAAGGGGAAAGC 59.034 45.455 0.00 0.00 0.00 3.51
538 539 3.234353 CAAAGGAAGAAAGGGGAAAGCT 58.766 45.455 0.00 0.00 0.00 3.74
539 540 2.593925 AGGAAGAAAGGGGAAAGCTG 57.406 50.000 0.00 0.00 0.00 4.24
540 541 1.076187 AGGAAGAAAGGGGAAAGCTGG 59.924 52.381 0.00 0.00 0.00 4.85
541 542 1.550327 GAAGAAAGGGGAAAGCTGGG 58.450 55.000 0.00 0.00 0.00 4.45
542 543 0.860457 AAGAAAGGGGAAAGCTGGGT 59.140 50.000 0.00 0.00 0.00 4.51
543 544 0.405973 AGAAAGGGGAAAGCTGGGTC 59.594 55.000 0.00 0.00 0.00 4.46
544 545 0.960861 GAAAGGGGAAAGCTGGGTCG 60.961 60.000 0.00 0.00 0.00 4.79
545 546 3.569200 AAGGGGAAAGCTGGGTCGC 62.569 63.158 0.00 0.00 0.00 5.19
546 547 4.344865 GGGGAAAGCTGGGTCGCA 62.345 66.667 10.33 0.00 0.00 5.10
547 548 3.056328 GGGAAAGCTGGGTCGCAC 61.056 66.667 0.00 0.00 0.00 5.34
548 549 3.423154 GGAAAGCTGGGTCGCACG 61.423 66.667 0.00 0.00 0.00 5.34
549 550 2.665185 GAAAGCTGGGTCGCACGT 60.665 61.111 0.00 0.00 0.00 4.49
550 551 2.954753 GAAAGCTGGGTCGCACGTG 61.955 63.158 12.28 12.28 0.00 4.49
551 552 3.454587 AAAGCTGGGTCGCACGTGA 62.455 57.895 22.23 0.00 0.00 4.35
552 553 2.731691 AAAGCTGGGTCGCACGTGAT 62.732 55.000 22.23 0.00 0.00 3.06
553 554 1.884075 AAGCTGGGTCGCACGTGATA 61.884 55.000 22.23 2.36 0.00 2.15
554 555 1.447140 GCTGGGTCGCACGTGATAA 60.447 57.895 22.23 0.00 0.00 1.75
555 556 0.810031 GCTGGGTCGCACGTGATAAT 60.810 55.000 22.23 0.00 0.00 1.28
556 557 0.930310 CTGGGTCGCACGTGATAATG 59.070 55.000 22.23 2.69 0.00 1.90
557 558 0.248012 TGGGTCGCACGTGATAATGT 59.752 50.000 22.23 0.00 0.00 2.71
558 559 0.650512 GGGTCGCACGTGATAATGTG 59.349 55.000 22.23 0.00 39.10 3.21
565 566 3.043635 CACGTGATAATGTGCTTCAGC 57.956 47.619 10.90 0.00 42.50 4.26
566 567 2.009774 ACGTGATAATGTGCTTCAGCC 58.990 47.619 0.00 0.00 41.18 4.85
567 568 1.331756 CGTGATAATGTGCTTCAGCCC 59.668 52.381 0.00 0.00 41.18 5.19
568 569 1.331756 GTGATAATGTGCTTCAGCCCG 59.668 52.381 0.00 0.00 41.18 6.13
569 570 1.065491 TGATAATGTGCTTCAGCCCGT 60.065 47.619 0.00 0.00 41.18 5.28
570 571 2.017049 GATAATGTGCTTCAGCCCGTT 58.983 47.619 0.00 0.00 41.18 4.44
571 572 2.772077 TAATGTGCTTCAGCCCGTTA 57.228 45.000 0.00 0.00 41.18 3.18
572 573 1.904287 AATGTGCTTCAGCCCGTTAA 58.096 45.000 0.00 0.00 41.18 2.01
573 574 1.453155 ATGTGCTTCAGCCCGTTAAG 58.547 50.000 0.00 0.00 41.18 1.85
574 575 0.394938 TGTGCTTCAGCCCGTTAAGA 59.605 50.000 0.00 0.00 41.18 2.10
575 576 1.202710 TGTGCTTCAGCCCGTTAAGAA 60.203 47.619 0.00 0.00 41.18 2.52
576 577 2.084546 GTGCTTCAGCCCGTTAAGAAT 58.915 47.619 0.00 0.00 41.18 2.40
577 578 2.488153 GTGCTTCAGCCCGTTAAGAATT 59.512 45.455 0.00 0.00 41.18 2.17
578 579 2.487762 TGCTTCAGCCCGTTAAGAATTG 59.512 45.455 0.00 0.00 41.18 2.32
579 580 2.747446 GCTTCAGCCCGTTAAGAATTGA 59.253 45.455 0.00 0.00 34.31 2.57
580 581 3.426292 GCTTCAGCCCGTTAAGAATTGAC 60.426 47.826 0.00 0.00 34.31 3.18
581 582 3.695830 TCAGCCCGTTAAGAATTGACT 57.304 42.857 0.00 0.00 31.62 3.41
582 583 4.811969 TCAGCCCGTTAAGAATTGACTA 57.188 40.909 0.00 0.00 31.62 2.59
583 584 4.755411 TCAGCCCGTTAAGAATTGACTAG 58.245 43.478 0.00 0.00 31.62 2.57
584 585 3.309954 CAGCCCGTTAAGAATTGACTAGC 59.690 47.826 0.00 0.00 31.62 3.42
585 586 2.612672 GCCCGTTAAGAATTGACTAGCC 59.387 50.000 0.00 0.00 31.62 3.93
586 587 3.203716 CCCGTTAAGAATTGACTAGCCC 58.796 50.000 0.00 0.00 31.62 5.19
587 588 3.370103 CCCGTTAAGAATTGACTAGCCCA 60.370 47.826 0.00 0.00 31.62 5.36
588 589 4.258543 CCGTTAAGAATTGACTAGCCCAA 58.741 43.478 1.31 1.31 31.62 4.12
589 590 4.698304 CCGTTAAGAATTGACTAGCCCAAA 59.302 41.667 2.78 0.00 31.62 3.28
590 591 5.357032 CCGTTAAGAATTGACTAGCCCAAAT 59.643 40.000 2.78 0.00 31.62 2.32
591 592 6.540914 CCGTTAAGAATTGACTAGCCCAAATA 59.459 38.462 2.78 0.00 31.62 1.40
592 593 7.228706 CCGTTAAGAATTGACTAGCCCAAATAT 59.771 37.037 2.78 0.00 31.62 1.28
593 594 8.070171 CGTTAAGAATTGACTAGCCCAAATATG 58.930 37.037 2.78 0.00 31.62 1.78
594 595 8.903820 GTTAAGAATTGACTAGCCCAAATATGT 58.096 33.333 2.78 0.00 31.06 2.29
595 596 7.573968 AAGAATTGACTAGCCCAAATATGTC 57.426 36.000 2.78 0.00 0.00 3.06
596 597 5.760253 AGAATTGACTAGCCCAAATATGTCG 59.240 40.000 2.78 0.00 0.00 4.35
597 598 4.481368 TTGACTAGCCCAAATATGTCGT 57.519 40.909 0.00 0.00 0.00 4.34
598 599 4.054780 TGACTAGCCCAAATATGTCGTC 57.945 45.455 0.00 0.00 0.00 4.20
599 600 3.449377 TGACTAGCCCAAATATGTCGTCA 59.551 43.478 0.00 0.00 0.00 4.35
600 601 4.051922 GACTAGCCCAAATATGTCGTCAG 58.948 47.826 0.00 0.00 0.00 3.51
601 602 3.451178 ACTAGCCCAAATATGTCGTCAGT 59.549 43.478 0.00 0.00 0.00 3.41
602 603 4.647853 ACTAGCCCAAATATGTCGTCAGTA 59.352 41.667 0.00 0.00 0.00 2.74
603 604 4.689612 AGCCCAAATATGTCGTCAGTAT 57.310 40.909 0.00 0.00 0.00 2.12
604 605 5.801531 AGCCCAAATATGTCGTCAGTATA 57.198 39.130 0.00 0.00 0.00 1.47
605 606 6.360370 AGCCCAAATATGTCGTCAGTATAT 57.640 37.500 0.00 0.00 0.00 0.86
606 607 6.769512 AGCCCAAATATGTCGTCAGTATATT 58.230 36.000 0.00 0.00 0.00 1.28
607 608 7.224297 AGCCCAAATATGTCGTCAGTATATTT 58.776 34.615 0.00 0.00 37.43 1.40
608 609 8.372459 AGCCCAAATATGTCGTCAGTATATTTA 58.628 33.333 0.00 0.00 35.77 1.40
609 610 8.995220 GCCCAAATATGTCGTCAGTATATTTAA 58.005 33.333 0.00 0.00 35.77 1.52
616 617 7.585286 TGTCGTCAGTATATTTAACACAACC 57.415 36.000 0.00 0.00 0.00 3.77
617 618 7.153315 TGTCGTCAGTATATTTAACACAACCA 58.847 34.615 0.00 0.00 0.00 3.67
618 619 7.329962 TGTCGTCAGTATATTTAACACAACCAG 59.670 37.037 0.00 0.00 0.00 4.00
619 620 7.543172 GTCGTCAGTATATTTAACACAACCAGA 59.457 37.037 0.00 0.00 0.00 3.86
620 621 8.089597 TCGTCAGTATATTTAACACAACCAGAA 58.910 33.333 0.00 0.00 0.00 3.02
621 622 8.166706 CGTCAGTATATTTAACACAACCAGAAC 58.833 37.037 0.00 0.00 0.00 3.01
622 623 8.995220 GTCAGTATATTTAACACAACCAGAACA 58.005 33.333 0.00 0.00 0.00 3.18
623 624 9.562408 TCAGTATATTTAACACAACCAGAACAA 57.438 29.630 0.00 0.00 0.00 2.83
634 635 7.477494 ACACAACCAGAACAAAATAACTACAC 58.523 34.615 0.00 0.00 0.00 2.90
639 640 7.581476 ACCAGAACAAAATAACTACACGAATG 58.419 34.615 0.00 0.00 0.00 2.67
641 642 7.308348 CCAGAACAAAATAACTACACGAATGGT 60.308 37.037 0.00 0.00 0.00 3.55
674 675 0.950836 TGGCACACAAAATCGACTGG 59.049 50.000 0.00 0.00 0.00 4.00
689 690 4.815269 TCGACTGGCCCAAAATAAAATTG 58.185 39.130 0.00 0.00 0.00 2.32
690 691 3.370672 CGACTGGCCCAAAATAAAATTGC 59.629 43.478 0.00 0.00 0.00 3.56
691 692 4.322567 GACTGGCCCAAAATAAAATTGCA 58.677 39.130 0.00 0.00 0.00 4.08
706 708 2.162319 TTGCAGACGACTTACATGCA 57.838 45.000 0.00 0.00 44.58 3.96
715 717 5.063944 AGACGACTTACATGCAGCTAAATTG 59.936 40.000 0.00 0.00 0.00 2.32
721 723 8.110860 ACTTACATGCAGCTAAATTGTTACTT 57.889 30.769 0.00 0.00 0.00 2.24
745 747 5.580691 TCAAATCTTTCATAGGTGCACGTAG 59.419 40.000 22.33 14.83 0.00 3.51
748 750 3.508402 TCTTTCATAGGTGCACGTAGACA 59.492 43.478 22.33 12.62 0.00 3.41
751 753 5.784578 TTCATAGGTGCACGTAGACATAT 57.215 39.130 22.33 5.06 0.00 1.78
758 760 4.381863 GGTGCACGTAGACATATGATTACG 59.618 45.833 26.65 26.65 43.17 3.18
767 769 8.761497 CGTAGACATATGATTACGGAAAATGTT 58.239 33.333 23.55 0.00 36.25 2.71
770 772 9.832445 AGACATATGATTACGGAAAATGTTAGT 57.168 29.630 10.38 0.00 0.00 2.24
773 775 6.937436 ATGATTACGGAAAATGTTAGTCCC 57.063 37.500 0.00 0.00 0.00 4.46
777 779 2.640826 ACGGAAAATGTTAGTCCCTCCA 59.359 45.455 0.00 0.00 0.00 3.86
784 786 4.927267 ATGTTAGTCCCTCCATTCACAA 57.073 40.909 0.00 0.00 0.00 3.33
786 788 4.394729 TGTTAGTCCCTCCATTCACAAAC 58.605 43.478 0.00 0.00 0.00 2.93
791 793 5.256474 AGTCCCTCCATTCACAAACATAAG 58.744 41.667 0.00 0.00 0.00 1.73
801 803 8.950210 CCATTCACAAACATAAGATGTCTAACT 58.050 33.333 0.00 0.00 44.07 2.24
874 877 6.367374 TTCATTCTGTATGTGGTCCAAGTA 57.633 37.500 0.00 0.00 35.64 2.24
876 879 7.669089 TCATTCTGTATGTGGTCCAAGTATA 57.331 36.000 0.00 0.00 35.64 1.47
877 880 7.497595 TCATTCTGTATGTGGTCCAAGTATAC 58.502 38.462 12.18 12.18 35.64 1.47
878 881 5.509716 TCTGTATGTGGTCCAAGTATACG 57.490 43.478 13.39 10.08 0.00 3.06
879 882 4.951715 TCTGTATGTGGTCCAAGTATACGT 59.048 41.667 13.39 0.00 0.00 3.57
880 883 5.001237 TGTATGTGGTCCAAGTATACGTG 57.999 43.478 11.39 11.39 0.00 4.49
881 884 4.463539 TGTATGTGGTCCAAGTATACGTGT 59.536 41.667 16.14 0.00 0.00 4.49
882 885 3.581024 TGTGGTCCAAGTATACGTGTC 57.419 47.619 16.14 9.48 0.00 3.67
883 886 2.231964 TGTGGTCCAAGTATACGTGTCC 59.768 50.000 16.14 16.59 0.00 4.02
884 887 2.231964 GTGGTCCAAGTATACGTGTCCA 59.768 50.000 20.15 20.15 0.00 4.02
885 888 2.898612 TGGTCCAAGTATACGTGTCCAA 59.101 45.455 21.06 11.18 30.30 3.53
886 889 3.056393 TGGTCCAAGTATACGTGTCCAAG 60.056 47.826 21.06 7.65 30.30 3.61
887 890 3.056322 GGTCCAAGTATACGTGTCCAAGT 60.056 47.826 16.14 0.00 0.00 3.16
888 891 4.158394 GGTCCAAGTATACGTGTCCAAGTA 59.842 45.833 16.14 0.00 0.00 2.24
889 892 5.163478 GGTCCAAGTATACGTGTCCAAGTAT 60.163 44.000 16.14 10.07 38.95 2.12
890 893 6.039717 GGTCCAAGTATACGTGTCCAAGTATA 59.960 42.308 16.14 8.42 37.26 1.47
980 983 1.895020 AAGCATGGTCGGTCGGCTAA 61.895 55.000 0.00 0.00 33.80 3.09
1025 1028 4.003648 AGGTCATTGAATTCTCCAACGAC 58.996 43.478 7.05 1.79 36.39 4.34
1098 1120 8.894768 ATATCTGCTACAAACTCAAATCCTAC 57.105 34.615 0.00 0.00 0.00 3.18
1099 1121 6.360370 TCTGCTACAAACTCAAATCCTACT 57.640 37.500 0.00 0.00 0.00 2.57
1101 1123 6.014584 TCTGCTACAAACTCAAATCCTACTCA 60.015 38.462 0.00 0.00 0.00 3.41
1102 1124 6.530120 TGCTACAAACTCAAATCCTACTCAA 58.470 36.000 0.00 0.00 0.00 3.02
1115 1137 1.933853 CTACTCAAATAGCCACGCACC 59.066 52.381 0.00 0.00 0.00 5.01
1116 1138 1.019278 ACTCAAATAGCCACGCACCG 61.019 55.000 0.00 0.00 0.00 4.94
1117 1139 1.705337 CTCAAATAGCCACGCACCGG 61.705 60.000 0.00 0.00 0.00 5.28
1272 1300 1.959738 GGCTACCGCGGCCTTATTC 60.960 63.158 28.58 7.33 45.57 1.75
1302 1330 3.116531 GTGGCGAGGTACAACCGC 61.117 66.667 14.60 14.60 44.90 5.68
1593 1624 2.029964 TTCACCGTCAACTCCGCC 59.970 61.111 0.00 0.00 0.00 6.13
1989 2020 3.371063 GTCGACACGCTCCTCCCA 61.371 66.667 11.55 0.00 0.00 4.37
2055 2086 2.579201 CCAGATCCCAACGTCGCT 59.421 61.111 0.00 0.00 0.00 4.93
2067 2098 4.443266 GTCGCTGCGCCCTTCTCT 62.443 66.667 18.65 0.00 0.00 3.10
2304 2341 1.091771 AGGACATCGAAAGCATGCCG 61.092 55.000 15.66 11.48 0.00 5.69
2927 2966 4.780815 ACCGATTCCAGCATTATGAGAAA 58.219 39.130 0.00 0.00 0.00 2.52
2929 2968 4.818546 CCGATTCCAGCATTATGAGAAAGT 59.181 41.667 0.00 0.00 0.00 2.66
2931 2970 6.652481 CCGATTCCAGCATTATGAGAAAGTAT 59.348 38.462 0.00 0.00 0.00 2.12
3000 3044 5.404366 CGGTATACACACCTGTATTATGTGC 59.596 44.000 5.01 0.00 46.19 4.57
3020 3064 1.497991 GCGAAGTAGCACAGTCACAA 58.502 50.000 0.00 0.00 37.05 3.33
3048 3092 6.966632 GCATCAAGCGAGTTTGTATGATTTTA 59.033 34.615 12.35 0.00 0.00 1.52
3097 3143 4.934356 TGGATTGCTCCTACCAAGATTTT 58.066 39.130 0.00 0.00 42.59 1.82
3098 3144 4.949856 TGGATTGCTCCTACCAAGATTTTC 59.050 41.667 0.00 0.00 42.59 2.29
3099 3145 4.339530 GGATTGCTCCTACCAAGATTTTCC 59.660 45.833 0.00 0.00 38.65 3.13
3100 3146 4.657814 TTGCTCCTACCAAGATTTTCCT 57.342 40.909 0.00 0.00 0.00 3.36
3101 3147 5.772393 TTGCTCCTACCAAGATTTTCCTA 57.228 39.130 0.00 0.00 0.00 2.94
3102 3148 5.772393 TGCTCCTACCAAGATTTTCCTAA 57.228 39.130 0.00 0.00 0.00 2.69
3103 3149 6.327386 TGCTCCTACCAAGATTTTCCTAAT 57.673 37.500 0.00 0.00 0.00 1.73
3104 3150 7.446106 TGCTCCTACCAAGATTTTCCTAATA 57.554 36.000 0.00 0.00 0.00 0.98
3107 3153 9.438228 GCTCCTACCAAGATTTTCCTAATATAC 57.562 37.037 0.00 0.00 0.00 1.47
3140 3186 3.140225 GAGGAGCCGGGTAAGAGCG 62.140 68.421 5.91 0.00 0.00 5.03
3143 3189 4.148825 AGCCGGGTAAGAGCGCTG 62.149 66.667 18.48 0.00 0.00 5.18
3147 3193 2.046314 GGGTAAGAGCGCTGCCAA 60.046 61.111 18.48 0.00 0.00 4.52
3150 3196 1.132640 GTAAGAGCGCTGCCAAACG 59.867 57.895 18.48 0.00 0.00 3.60
3160 3206 3.163594 CGCTGCCAAACGATTAAGAAAG 58.836 45.455 0.00 0.00 0.00 2.62
3169 3215 7.189512 CCAAACGATTAAGAAAGGATTAGCAG 58.810 38.462 0.00 0.00 0.00 4.24
3185 3231 3.347077 AGCAGACATCTTTTCTCAGGG 57.653 47.619 0.00 0.00 0.00 4.45
3186 3232 2.909006 AGCAGACATCTTTTCTCAGGGA 59.091 45.455 0.00 0.00 0.00 4.20
3191 3237 4.079901 AGACATCTTTTCTCAGGGATGCAT 60.080 41.667 0.00 0.00 39.10 3.96
3244 3294 2.745281 CCGGTCGGATGCTTTTTCTTTA 59.255 45.455 2.83 0.00 37.50 1.85
3245 3295 3.189702 CCGGTCGGATGCTTTTTCTTTAA 59.810 43.478 2.83 0.00 37.50 1.52
3246 3296 4.142469 CCGGTCGGATGCTTTTTCTTTAAT 60.142 41.667 2.83 0.00 37.50 1.40
3247 3297 4.793216 CGGTCGGATGCTTTTTCTTTAATG 59.207 41.667 0.00 0.00 0.00 1.90
3248 3298 5.391523 CGGTCGGATGCTTTTTCTTTAATGA 60.392 40.000 0.00 0.00 0.00 2.57
3249 3299 6.386654 GGTCGGATGCTTTTTCTTTAATGAA 58.613 36.000 0.00 0.00 0.00 2.57
3250 3300 6.866248 GGTCGGATGCTTTTTCTTTAATGAAA 59.134 34.615 11.39 11.39 34.55 2.69
3251 3301 7.062255 GGTCGGATGCTTTTTCTTTAATGAAAG 59.938 37.037 14.12 0.00 43.05 2.62
3252 3302 7.062255 GTCGGATGCTTTTTCTTTAATGAAAGG 59.938 37.037 14.12 12.46 42.13 3.11
3253 3303 6.183360 CGGATGCTTTTTCTTTAATGAAAGGC 60.183 38.462 22.24 22.24 42.13 4.35
3254 3304 6.092670 GGATGCTTTTTCTTTAATGAAAGGCC 59.907 38.462 23.99 0.00 42.13 5.19
3255 3305 6.173427 TGCTTTTTCTTTAATGAAAGGCCT 57.827 33.333 23.99 0.00 42.13 5.19
3256 3306 6.591001 TGCTTTTTCTTTAATGAAAGGCCTT 58.409 32.000 13.78 13.78 42.13 4.35
3257 3307 6.705825 TGCTTTTTCTTTAATGAAAGGCCTTC 59.294 34.615 20.79 12.94 42.13 3.46
3258 3308 6.931281 GCTTTTTCTTTAATGAAAGGCCTTCT 59.069 34.615 20.79 9.27 42.13 2.85
3259 3309 7.095481 GCTTTTTCTTTAATGAAAGGCCTTCTG 60.095 37.037 20.79 3.32 42.13 3.02
3260 3310 5.982890 TTCTTTAATGAAAGGCCTTCTGG 57.017 39.130 20.79 3.86 42.13 3.86
3261 3311 4.998051 TCTTTAATGAAAGGCCTTCTGGT 58.002 39.130 20.79 1.84 42.13 4.00
3262 3312 5.010282 TCTTTAATGAAAGGCCTTCTGGTC 58.990 41.667 20.79 13.35 42.13 4.02
3263 3313 2.978156 AATGAAAGGCCTTCTGGTCA 57.022 45.000 20.79 18.98 41.31 4.02
3264 3314 2.503895 ATGAAAGGCCTTCTGGTCAG 57.496 50.000 20.79 0.00 41.31 3.51
3265 3315 0.250901 TGAAAGGCCTTCTGGTCAGC 60.251 55.000 20.79 1.87 41.31 4.26
3266 3316 0.037447 GAAAGGCCTTCTGGTCAGCT 59.963 55.000 20.79 0.00 41.31 4.24
3267 3317 0.480252 AAAGGCCTTCTGGTCAGCTT 59.520 50.000 20.79 0.00 41.31 3.74
3268 3318 0.480252 AAGGCCTTCTGGTCAGCTTT 59.520 50.000 13.78 0.00 41.31 3.51
3269 3319 1.362224 AGGCCTTCTGGTCAGCTTTA 58.638 50.000 0.00 0.00 41.31 1.85
3270 3320 1.918957 AGGCCTTCTGGTCAGCTTTAT 59.081 47.619 0.00 0.00 41.31 1.40
3271 3321 2.310052 AGGCCTTCTGGTCAGCTTTATT 59.690 45.455 0.00 0.00 41.31 1.40
3272 3322 3.523564 AGGCCTTCTGGTCAGCTTTATTA 59.476 43.478 0.00 0.00 41.31 0.98
3273 3323 4.018415 AGGCCTTCTGGTCAGCTTTATTAA 60.018 41.667 0.00 0.00 41.31 1.40
3274 3324 4.096532 GGCCTTCTGGTCAGCTTTATTAAC 59.903 45.833 0.00 0.00 38.01 2.01
3275 3325 4.700213 GCCTTCTGGTCAGCTTTATTAACA 59.300 41.667 0.00 0.00 35.27 2.41
3276 3326 5.358160 GCCTTCTGGTCAGCTTTATTAACAT 59.642 40.000 0.00 0.00 35.27 2.71
3277 3327 6.458888 GCCTTCTGGTCAGCTTTATTAACATC 60.459 42.308 0.00 0.00 35.27 3.06
3278 3328 6.599244 CCTTCTGGTCAGCTTTATTAACATCA 59.401 38.462 0.00 0.00 0.00 3.07
3279 3329 6.985188 TCTGGTCAGCTTTATTAACATCAC 57.015 37.500 0.00 0.00 0.00 3.06
3280 3330 6.711277 TCTGGTCAGCTTTATTAACATCACT 58.289 36.000 0.00 0.00 0.00 3.41
3281 3331 7.168219 TCTGGTCAGCTTTATTAACATCACTT 58.832 34.615 0.00 0.00 0.00 3.16
3282 3332 8.318412 TCTGGTCAGCTTTATTAACATCACTTA 58.682 33.333 0.00 0.00 0.00 2.24
3283 3333 8.263940 TGGTCAGCTTTATTAACATCACTTAC 57.736 34.615 0.00 0.00 0.00 2.34
3284 3334 7.880713 TGGTCAGCTTTATTAACATCACTTACA 59.119 33.333 0.00 0.00 0.00 2.41
3285 3335 8.893727 GGTCAGCTTTATTAACATCACTTACAT 58.106 33.333 0.00 0.00 0.00 2.29
3286 3336 9.922305 GTCAGCTTTATTAACATCACTTACATC 57.078 33.333 0.00 0.00 0.00 3.06
3287 3337 8.817100 TCAGCTTTATTAACATCACTTACATCG 58.183 33.333 0.00 0.00 0.00 3.84
3288 3338 7.584123 CAGCTTTATTAACATCACTTACATCGC 59.416 37.037 0.00 0.00 0.00 4.58
3289 3339 7.495934 AGCTTTATTAACATCACTTACATCGCT 59.504 33.333 0.00 0.00 0.00 4.93
3290 3340 7.584123 GCTTTATTAACATCACTTACATCGCTG 59.416 37.037 0.00 0.00 0.00 5.18
3291 3341 4.857871 TTAACATCACTTACATCGCTGC 57.142 40.909 0.00 0.00 0.00 5.25
3292 3342 2.680312 ACATCACTTACATCGCTGCT 57.320 45.000 0.00 0.00 0.00 4.24
3293 3343 3.801114 ACATCACTTACATCGCTGCTA 57.199 42.857 0.00 0.00 0.00 3.49
3294 3344 4.123497 ACATCACTTACATCGCTGCTAA 57.877 40.909 0.00 0.00 0.00 3.09
3295 3345 4.503910 ACATCACTTACATCGCTGCTAAA 58.496 39.130 0.00 0.00 0.00 1.85
3296 3346 4.935205 ACATCACTTACATCGCTGCTAAAA 59.065 37.500 0.00 0.00 0.00 1.52
3297 3347 5.411361 ACATCACTTACATCGCTGCTAAAAA 59.589 36.000 0.00 0.00 0.00 1.94
3298 3348 6.094048 ACATCACTTACATCGCTGCTAAAAAT 59.906 34.615 0.00 0.00 0.00 1.82
3299 3349 6.494893 TCACTTACATCGCTGCTAAAAATT 57.505 33.333 0.00 0.00 0.00 1.82
3300 3350 6.908825 TCACTTACATCGCTGCTAAAAATTT 58.091 32.000 0.00 0.00 0.00 1.82
3301 3351 8.035165 TCACTTACATCGCTGCTAAAAATTTA 57.965 30.769 0.00 0.00 0.00 1.40
3302 3352 8.508062 TCACTTACATCGCTGCTAAAAATTTAA 58.492 29.630 0.00 0.00 0.00 1.52
3303 3353 9.289303 CACTTACATCGCTGCTAAAAATTTAAT 57.711 29.630 0.00 0.00 0.00 1.40
3304 3354 9.503427 ACTTACATCGCTGCTAAAAATTTAATC 57.497 29.630 0.00 0.00 0.00 1.75
3305 3355 9.502145 CTTACATCGCTGCTAAAAATTTAATCA 57.498 29.630 0.00 0.00 0.00 2.57
3306 3356 7.975866 ACATCGCTGCTAAAAATTTAATCAG 57.024 32.000 0.00 0.00 31.77 2.90
3307 3357 7.761409 ACATCGCTGCTAAAAATTTAATCAGA 58.239 30.769 14.13 0.00 30.93 3.27
3308 3358 8.243426 ACATCGCTGCTAAAAATTTAATCAGAA 58.757 29.630 14.13 6.21 30.93 3.02
3309 3359 9.075519 CATCGCTGCTAAAAATTTAATCAGAAA 57.924 29.630 14.13 5.98 30.93 2.52
3310 3360 9.638239 ATCGCTGCTAAAAATTTAATCAGAAAA 57.362 25.926 14.13 0.00 30.93 2.29
3311 3361 8.911662 TCGCTGCTAAAAATTTAATCAGAAAAC 58.088 29.630 14.13 0.00 30.93 2.43
3312 3362 8.162245 CGCTGCTAAAAATTTAATCAGAAAACC 58.838 33.333 14.13 2.17 30.93 3.27
3313 3363 8.162245 GCTGCTAAAAATTTAATCAGAAAACCG 58.838 33.333 14.13 0.00 30.93 4.44
3314 3364 8.527567 TGCTAAAAATTTAATCAGAAAACCGG 57.472 30.769 0.00 0.00 0.00 5.28
3315 3365 7.600752 TGCTAAAAATTTAATCAGAAAACCGGG 59.399 33.333 6.32 0.00 0.00 5.73
3316 3366 7.064134 GCTAAAAATTTAATCAGAAAACCGGGG 59.936 37.037 6.32 0.00 0.00 5.73
3317 3367 6.673839 AAAATTTAATCAGAAAACCGGGGA 57.326 33.333 6.32 0.00 0.00 4.81
3318 3368 5.914898 AATTTAATCAGAAAACCGGGGAG 57.085 39.130 6.32 0.00 0.00 4.30
3320 3370 0.323451 AATCAGAAAACCGGGGAGGC 60.323 55.000 6.32 0.00 46.52 4.70
3321 3371 2.211468 ATCAGAAAACCGGGGAGGCC 62.211 60.000 6.32 0.00 46.52 5.19
3322 3372 2.856988 AGAAAACCGGGGAGGCCA 60.857 61.111 6.32 0.00 46.52 5.36
3323 3373 2.238701 AGAAAACCGGGGAGGCCAT 61.239 57.895 6.32 0.00 46.52 4.40
3324 3374 1.753078 GAAAACCGGGGAGGCCATC 60.753 63.158 6.32 0.00 46.52 3.51
3333 3383 4.018409 GAGGCCATCCACCAAACC 57.982 61.111 5.01 0.00 33.74 3.27
3334 3384 1.076549 GAGGCCATCCACCAAACCA 59.923 57.895 5.01 0.00 33.74 3.67
3335 3385 0.541764 GAGGCCATCCACCAAACCAA 60.542 55.000 5.01 0.00 33.74 3.67
3336 3386 0.542702 AGGCCATCCACCAAACCAAG 60.543 55.000 5.01 0.00 33.74 3.61
3337 3387 1.543944 GGCCATCCACCAAACCAAGG 61.544 60.000 0.00 0.00 0.00 3.61
3338 3388 1.543944 GCCATCCACCAAACCAAGGG 61.544 60.000 0.00 0.00 0.00 3.95
3339 3389 0.904394 CCATCCACCAAACCAAGGGG 60.904 60.000 0.00 0.00 41.29 4.79
3343 3393 3.474083 CACCAAACCAAGGGGGAAT 57.526 52.632 1.47 0.00 41.15 3.01
3344 3394 1.728323 CACCAAACCAAGGGGGAATT 58.272 50.000 1.47 0.00 41.15 2.17
3698 3748 5.104259 AGATCAACTTCCTACACCCATTC 57.896 43.478 0.00 0.00 0.00 2.67
3699 3749 4.785376 AGATCAACTTCCTACACCCATTCT 59.215 41.667 0.00 0.00 0.00 2.40
3700 3750 4.993705 TCAACTTCCTACACCCATTCTT 57.006 40.909 0.00 0.00 0.00 2.52
3701 3751 5.319043 TCAACTTCCTACACCCATTCTTT 57.681 39.130 0.00 0.00 0.00 2.52
3702 3752 5.701224 TCAACTTCCTACACCCATTCTTTT 58.299 37.500 0.00 0.00 0.00 2.27
3703 3753 6.133356 TCAACTTCCTACACCCATTCTTTTT 58.867 36.000 0.00 0.00 0.00 1.94
3723 3773 3.907894 TTTTTAAAGTGGCCAGCGTAG 57.092 42.857 5.11 0.00 0.00 3.51
3739 3789 3.806316 CGTAGCTGGTTTTCGTTTCAT 57.194 42.857 0.00 0.00 0.00 2.57
3740 3790 4.141855 CGTAGCTGGTTTTCGTTTCATT 57.858 40.909 0.00 0.00 0.00 2.57
3741 3791 4.533222 CGTAGCTGGTTTTCGTTTCATTT 58.467 39.130 0.00 0.00 0.00 2.32
3742 3792 5.681880 CGTAGCTGGTTTTCGTTTCATTTA 58.318 37.500 0.00 0.00 0.00 1.40
3743 3793 5.788531 CGTAGCTGGTTTTCGTTTCATTTAG 59.211 40.000 0.00 0.00 0.00 1.85
3744 3794 4.546570 AGCTGGTTTTCGTTTCATTTAGC 58.453 39.130 0.00 0.00 0.00 3.09
3745 3795 4.037446 AGCTGGTTTTCGTTTCATTTAGCA 59.963 37.500 0.00 0.00 0.00 3.49
3746 3796 4.382754 GCTGGTTTTCGTTTCATTTAGCAG 59.617 41.667 0.00 0.00 33.96 4.24
3747 3797 4.865776 TGGTTTTCGTTTCATTTAGCAGG 58.134 39.130 0.00 0.00 0.00 4.85
3748 3798 4.234574 GGTTTTCGTTTCATTTAGCAGGG 58.765 43.478 0.00 0.00 0.00 4.45
3749 3799 4.022676 GGTTTTCGTTTCATTTAGCAGGGA 60.023 41.667 0.00 0.00 0.00 4.20
3750 3800 5.154222 GTTTTCGTTTCATTTAGCAGGGAG 58.846 41.667 0.00 0.00 0.00 4.30
3751 3801 3.973206 TCGTTTCATTTAGCAGGGAGA 57.027 42.857 0.00 0.00 0.00 3.71
3752 3802 4.280436 TCGTTTCATTTAGCAGGGAGAA 57.720 40.909 0.00 0.00 0.00 2.87
3753 3803 4.647611 TCGTTTCATTTAGCAGGGAGAAA 58.352 39.130 0.00 0.00 0.00 2.52
3754 3804 4.695455 TCGTTTCATTTAGCAGGGAGAAAG 59.305 41.667 0.00 0.00 0.00 2.62
3755 3805 4.455877 CGTTTCATTTAGCAGGGAGAAAGT 59.544 41.667 0.00 0.00 0.00 2.66
3756 3806 5.048713 CGTTTCATTTAGCAGGGAGAAAGTT 60.049 40.000 0.00 0.00 0.00 2.66
3757 3807 6.148811 CGTTTCATTTAGCAGGGAGAAAGTTA 59.851 38.462 0.00 0.00 0.00 2.24
3758 3808 7.306213 GTTTCATTTAGCAGGGAGAAAGTTAC 58.694 38.462 0.00 0.00 0.00 2.50
3759 3809 6.121776 TCATTTAGCAGGGAGAAAGTTACA 57.878 37.500 0.00 0.00 0.00 2.41
3760 3810 6.173339 TCATTTAGCAGGGAGAAAGTTACAG 58.827 40.000 0.00 0.00 0.00 2.74
3761 3811 5.818678 TTTAGCAGGGAGAAAGTTACAGA 57.181 39.130 0.00 0.00 0.00 3.41
3762 3812 5.818678 TTAGCAGGGAGAAAGTTACAGAA 57.181 39.130 0.00 0.00 0.00 3.02
3763 3813 4.706842 AGCAGGGAGAAAGTTACAGAAA 57.293 40.909 0.00 0.00 0.00 2.52
3764 3814 4.390264 AGCAGGGAGAAAGTTACAGAAAC 58.610 43.478 0.00 0.00 38.46 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.935885 TTTCAAAAAGCGCACATTTTGT 57.064 31.818 28.87 10.24 42.35 2.83
13 14 7.408500 GCATATTTTCAAAAAGCGCACATTTTG 60.408 33.333 26.61 26.61 42.83 2.44
14 15 6.578172 GCATATTTTCAAAAAGCGCACATTTT 59.422 30.769 11.47 11.37 0.00 1.82
15 16 6.079120 GCATATTTTCAAAAAGCGCACATTT 58.921 32.000 11.47 4.97 0.00 2.32
16 17 5.178996 TGCATATTTTCAAAAAGCGCACATT 59.821 32.000 11.47 0.00 30.39 2.71
17 18 4.689812 TGCATATTTTCAAAAAGCGCACAT 59.310 33.333 11.47 0.00 30.39 3.21
18 19 4.053983 TGCATATTTTCAAAAAGCGCACA 58.946 34.783 11.47 0.00 30.39 4.57
19 20 4.644044 TGCATATTTTCAAAAAGCGCAC 57.356 36.364 11.47 0.00 30.39 5.34
20 21 4.987285 TCTTGCATATTTTCAAAAAGCGCA 59.013 33.333 11.47 0.65 32.20 6.09
21 22 5.514059 TCTTGCATATTTTCAAAAAGCGC 57.486 34.783 0.00 0.00 0.00 5.92
36 37 8.916062 TCCACAATCATATGTTTATTCTTGCAT 58.084 29.630 1.90 0.00 0.00 3.96
37 38 8.291191 TCCACAATCATATGTTTATTCTTGCA 57.709 30.769 1.90 0.00 0.00 4.08
38 39 9.754382 ATTCCACAATCATATGTTTATTCTTGC 57.246 29.630 1.90 0.00 0.00 4.01
57 58 9.921637 GAACCATACTTTTATGAAAATTCCACA 57.078 29.630 0.00 0.00 37.86 4.17
58 59 9.366216 GGAACCATACTTTTATGAAAATTCCAC 57.634 33.333 0.00 0.00 37.86 4.02
59 60 9.320295 AGGAACCATACTTTTATGAAAATTCCA 57.680 29.630 11.91 0.00 37.86 3.53
63 64 9.675464 TCGTAGGAACCATACTTTTATGAAAAT 57.325 29.630 0.00 0.00 37.86 1.82
64 65 9.504708 TTCGTAGGAACCATACTTTTATGAAAA 57.495 29.630 0.00 0.00 37.86 2.29
65 66 9.158233 CTTCGTAGGAACCATACTTTTATGAAA 57.842 33.333 0.00 0.00 37.86 2.69
66 67 7.767198 CCTTCGTAGGAACCATACTTTTATGAA 59.233 37.037 0.98 0.00 45.05 2.57
67 68 7.270047 CCTTCGTAGGAACCATACTTTTATGA 58.730 38.462 0.98 0.00 45.05 2.15
68 69 7.478520 CCTTCGTAGGAACCATACTTTTATG 57.521 40.000 0.98 0.00 45.05 1.90
83 84 3.818773 ACACAAAACCATTCCTTCGTAGG 59.181 43.478 0.79 0.79 43.46 3.18
84 85 4.513692 TGACACAAAACCATTCCTTCGTAG 59.486 41.667 0.00 0.00 0.00 3.51
85 86 4.452825 TGACACAAAACCATTCCTTCGTA 58.547 39.130 0.00 0.00 0.00 3.43
86 87 3.283751 TGACACAAAACCATTCCTTCGT 58.716 40.909 0.00 0.00 0.00 3.85
87 88 3.980646 TGACACAAAACCATTCCTTCG 57.019 42.857 0.00 0.00 0.00 3.79
88 89 6.048509 ACAAATGACACAAAACCATTCCTTC 58.951 36.000 0.00 0.00 30.93 3.46
89 90 5.988287 ACAAATGACACAAAACCATTCCTT 58.012 33.333 0.00 0.00 30.93 3.36
90 91 5.612725 ACAAATGACACAAAACCATTCCT 57.387 34.783 0.00 0.00 30.93 3.36
91 92 7.961325 AATACAAATGACACAAAACCATTCC 57.039 32.000 0.00 0.00 30.93 3.01
92 93 8.921670 GGTAATACAAATGACACAAAACCATTC 58.078 33.333 0.00 0.00 30.93 2.67
93 94 8.646900 AGGTAATACAAATGACACAAAACCATT 58.353 29.630 0.00 0.00 32.46 3.16
94 95 8.189119 AGGTAATACAAATGACACAAAACCAT 57.811 30.769 0.00 0.00 0.00 3.55
95 96 7.589958 AGGTAATACAAATGACACAAAACCA 57.410 32.000 0.00 0.00 0.00 3.67
96 97 8.138712 TGAAGGTAATACAAATGACACAAAACC 58.861 33.333 0.00 0.00 0.00 3.27
97 98 9.522804 TTGAAGGTAATACAAATGACACAAAAC 57.477 29.630 0.00 0.00 0.00 2.43
99 100 9.743057 CTTTGAAGGTAATACAAATGACACAAA 57.257 29.630 0.00 0.00 33.97 2.83
100 101 9.126151 TCTTTGAAGGTAATACAAATGACACAA 57.874 29.630 0.00 0.00 33.97 3.33
101 102 8.684386 TCTTTGAAGGTAATACAAATGACACA 57.316 30.769 0.00 0.00 33.97 3.72
102 103 9.612620 CTTCTTTGAAGGTAATACAAATGACAC 57.387 33.333 0.00 0.00 33.97 3.67
103 104 9.567776 TCTTCTTTGAAGGTAATACAAATGACA 57.432 29.630 7.37 0.00 33.97 3.58
167 168 8.853126 CCAATGCTATTCATTCATTCTTCCTTA 58.147 33.333 0.00 0.00 43.21 2.69
168 169 7.343833 ACCAATGCTATTCATTCATTCTTCCTT 59.656 33.333 0.00 0.00 43.21 3.36
169 170 6.837568 ACCAATGCTATTCATTCATTCTTCCT 59.162 34.615 0.00 0.00 43.21 3.36
170 171 7.047460 ACCAATGCTATTCATTCATTCTTCC 57.953 36.000 0.00 0.00 43.21 3.46
232 233 4.260170 TGCAAATTGGTCTGCAAGTTTTT 58.740 34.783 0.04 0.00 45.25 1.94
233 234 3.871485 TGCAAATTGGTCTGCAAGTTTT 58.129 36.364 0.04 0.00 45.25 2.43
234 235 3.540314 TGCAAATTGGTCTGCAAGTTT 57.460 38.095 0.04 0.00 45.25 2.66
239 240 3.138884 TCTAGTGCAAATTGGTCTGCA 57.861 42.857 0.00 0.00 46.01 4.41
240 241 4.708726 ATTCTAGTGCAAATTGGTCTGC 57.291 40.909 0.00 0.00 39.09 4.26
241 242 7.988737 TCATAATTCTAGTGCAAATTGGTCTG 58.011 34.615 4.66 0.00 0.00 3.51
242 243 8.757982 ATCATAATTCTAGTGCAAATTGGTCT 57.242 30.769 4.66 0.00 0.00 3.85
243 244 9.807649 AAATCATAATTCTAGTGCAAATTGGTC 57.192 29.630 4.66 0.00 0.00 4.02
328 329 9.386010 GGGTAAGTGTAAATATATTCACACACA 57.614 33.333 26.57 14.82 42.92 3.72
329 330 9.386010 TGGGTAAGTGTAAATATATTCACACAC 57.614 33.333 26.57 22.97 42.92 3.82
330 331 9.961264 TTGGGTAAGTGTAAATATATTCACACA 57.039 29.630 26.57 15.50 42.92 3.72
332 333 9.961264 TGTTGGGTAAGTGTAAATATATTCACA 57.039 29.630 15.76 8.36 33.84 3.58
338 339 9.976776 TTTGGATGTTGGGTAAGTGTAAATATA 57.023 29.630 0.00 0.00 0.00 0.86
339 340 8.887264 TTTGGATGTTGGGTAAGTGTAAATAT 57.113 30.769 0.00 0.00 0.00 1.28
340 341 8.707796 TTTTGGATGTTGGGTAAGTGTAAATA 57.292 30.769 0.00 0.00 0.00 1.40
341 342 7.604657 TTTTGGATGTTGGGTAAGTGTAAAT 57.395 32.000 0.00 0.00 0.00 1.40
342 343 7.419711 TTTTTGGATGTTGGGTAAGTGTAAA 57.580 32.000 0.00 0.00 0.00 2.01
343 344 7.604657 ATTTTTGGATGTTGGGTAAGTGTAA 57.395 32.000 0.00 0.00 0.00 2.41
344 345 7.724506 TGTATTTTTGGATGTTGGGTAAGTGTA 59.275 33.333 0.00 0.00 0.00 2.90
345 346 6.551601 TGTATTTTTGGATGTTGGGTAAGTGT 59.448 34.615 0.00 0.00 0.00 3.55
346 347 6.866248 GTGTATTTTTGGATGTTGGGTAAGTG 59.134 38.462 0.00 0.00 0.00 3.16
347 348 6.551601 TGTGTATTTTTGGATGTTGGGTAAGT 59.448 34.615 0.00 0.00 0.00 2.24
348 349 6.987386 TGTGTATTTTTGGATGTTGGGTAAG 58.013 36.000 0.00 0.00 0.00 2.34
349 350 6.978674 TGTGTATTTTTGGATGTTGGGTAA 57.021 33.333 0.00 0.00 0.00 2.85
350 351 6.978674 TTGTGTATTTTTGGATGTTGGGTA 57.021 33.333 0.00 0.00 0.00 3.69
351 352 5.878406 TTGTGTATTTTTGGATGTTGGGT 57.122 34.783 0.00 0.00 0.00 4.51
352 353 6.540189 TGTTTTGTGTATTTTTGGATGTTGGG 59.460 34.615 0.00 0.00 0.00 4.12
353 354 7.493971 TCTGTTTTGTGTATTTTTGGATGTTGG 59.506 33.333 0.00 0.00 0.00 3.77
354 355 8.417780 TCTGTTTTGTGTATTTTTGGATGTTG 57.582 30.769 0.00 0.00 0.00 3.33
355 356 9.442047 TTTCTGTTTTGTGTATTTTTGGATGTT 57.558 25.926 0.00 0.00 0.00 2.71
356 357 9.442047 TTTTCTGTTTTGTGTATTTTTGGATGT 57.558 25.926 0.00 0.00 0.00 3.06
357 358 9.701355 GTTTTCTGTTTTGTGTATTTTTGGATG 57.299 29.630 0.00 0.00 0.00 3.51
358 359 9.665719 AGTTTTCTGTTTTGTGTATTTTTGGAT 57.334 25.926 0.00 0.00 0.00 3.41
390 391 9.275398 TCCGCTTTAGTTTTCTTTATTAGTTGA 57.725 29.630 0.00 0.00 0.00 3.18
403 404 9.811995 ACTTTTTCTTTTATCCGCTTTAGTTTT 57.188 25.926 0.00 0.00 0.00 2.43
404 405 9.244799 CACTTTTTCTTTTATCCGCTTTAGTTT 57.755 29.630 0.00 0.00 0.00 2.66
405 406 7.381408 GCACTTTTTCTTTTATCCGCTTTAGTT 59.619 33.333 0.00 0.00 0.00 2.24
406 407 6.861572 GCACTTTTTCTTTTATCCGCTTTAGT 59.138 34.615 0.00 0.00 0.00 2.24
407 408 6.861055 TGCACTTTTTCTTTTATCCGCTTTAG 59.139 34.615 0.00 0.00 0.00 1.85
408 409 6.740110 TGCACTTTTTCTTTTATCCGCTTTA 58.260 32.000 0.00 0.00 0.00 1.85
409 410 5.596845 TGCACTTTTTCTTTTATCCGCTTT 58.403 33.333 0.00 0.00 0.00 3.51
410 411 5.195001 TGCACTTTTTCTTTTATCCGCTT 57.805 34.783 0.00 0.00 0.00 4.68
411 412 4.846779 TGCACTTTTTCTTTTATCCGCT 57.153 36.364 0.00 0.00 0.00 5.52
412 413 5.898630 TTTGCACTTTTTCTTTTATCCGC 57.101 34.783 0.00 0.00 0.00 5.54
512 513 6.381498 TTTCCCCTTTCTTCCTTTGTTTTT 57.619 33.333 0.00 0.00 0.00 1.94
513 514 5.629133 GCTTTCCCCTTTCTTCCTTTGTTTT 60.629 40.000 0.00 0.00 0.00 2.43
514 515 4.141711 GCTTTCCCCTTTCTTCCTTTGTTT 60.142 41.667 0.00 0.00 0.00 2.83
515 516 3.388024 GCTTTCCCCTTTCTTCCTTTGTT 59.612 43.478 0.00 0.00 0.00 2.83
516 517 2.965831 GCTTTCCCCTTTCTTCCTTTGT 59.034 45.455 0.00 0.00 0.00 2.83
517 518 3.006217 CAGCTTTCCCCTTTCTTCCTTTG 59.994 47.826 0.00 0.00 0.00 2.77
518 519 3.234353 CAGCTTTCCCCTTTCTTCCTTT 58.766 45.455 0.00 0.00 0.00 3.11
519 520 2.491640 CCAGCTTTCCCCTTTCTTCCTT 60.492 50.000 0.00 0.00 0.00 3.36
520 521 1.076187 CCAGCTTTCCCCTTTCTTCCT 59.924 52.381 0.00 0.00 0.00 3.36
521 522 1.550327 CCAGCTTTCCCCTTTCTTCC 58.450 55.000 0.00 0.00 0.00 3.46
522 523 1.203063 ACCCAGCTTTCCCCTTTCTTC 60.203 52.381 0.00 0.00 0.00 2.87
523 524 0.860457 ACCCAGCTTTCCCCTTTCTT 59.140 50.000 0.00 0.00 0.00 2.52
524 525 0.405973 GACCCAGCTTTCCCCTTTCT 59.594 55.000 0.00 0.00 0.00 2.52
525 526 0.960861 CGACCCAGCTTTCCCCTTTC 60.961 60.000 0.00 0.00 0.00 2.62
526 527 1.074951 CGACCCAGCTTTCCCCTTT 59.925 57.895 0.00 0.00 0.00 3.11
527 528 2.757077 CGACCCAGCTTTCCCCTT 59.243 61.111 0.00 0.00 0.00 3.95
528 529 4.035102 GCGACCCAGCTTTCCCCT 62.035 66.667 0.00 0.00 0.00 4.79
529 530 4.344865 TGCGACCCAGCTTTCCCC 62.345 66.667 0.00 0.00 38.13 4.81
530 531 3.056328 GTGCGACCCAGCTTTCCC 61.056 66.667 0.00 0.00 38.13 3.97
531 532 3.423154 CGTGCGACCCAGCTTTCC 61.423 66.667 0.00 0.00 38.13 3.13
532 533 2.665185 ACGTGCGACCCAGCTTTC 60.665 61.111 0.00 0.00 38.13 2.62
533 534 2.731691 ATCACGTGCGACCCAGCTTT 62.732 55.000 11.67 0.00 38.13 3.51
534 535 1.884075 TATCACGTGCGACCCAGCTT 61.884 55.000 11.67 0.00 38.13 3.74
535 536 1.884075 TTATCACGTGCGACCCAGCT 61.884 55.000 11.67 0.00 38.13 4.24
536 537 0.810031 ATTATCACGTGCGACCCAGC 60.810 55.000 11.67 0.00 37.71 4.85
537 538 0.930310 CATTATCACGTGCGACCCAG 59.070 55.000 11.67 0.00 0.00 4.45
538 539 0.248012 ACATTATCACGTGCGACCCA 59.752 50.000 11.67 0.00 0.00 4.51
539 540 0.650512 CACATTATCACGTGCGACCC 59.349 55.000 11.67 0.00 0.00 4.46
545 546 2.223112 GGCTGAAGCACATTATCACGTG 60.223 50.000 9.94 9.94 44.36 4.49
546 547 2.009774 GGCTGAAGCACATTATCACGT 58.990 47.619 4.43 0.00 44.36 4.49
547 548 1.331756 GGGCTGAAGCACATTATCACG 59.668 52.381 4.43 0.00 45.57 4.35
548 549 1.331756 CGGGCTGAAGCACATTATCAC 59.668 52.381 5.24 0.00 46.93 3.06
549 550 1.065491 ACGGGCTGAAGCACATTATCA 60.065 47.619 5.24 0.00 46.93 2.15
550 551 1.668419 ACGGGCTGAAGCACATTATC 58.332 50.000 5.24 0.00 46.93 1.75
551 552 2.128771 AACGGGCTGAAGCACATTAT 57.871 45.000 5.24 0.00 46.93 1.28
552 553 2.772077 TAACGGGCTGAAGCACATTA 57.228 45.000 5.24 0.00 46.93 1.90
553 554 1.812571 CTTAACGGGCTGAAGCACATT 59.187 47.619 5.24 0.00 46.93 2.71
554 555 1.003118 TCTTAACGGGCTGAAGCACAT 59.997 47.619 5.24 0.00 46.93 3.21
555 556 0.394938 TCTTAACGGGCTGAAGCACA 59.605 50.000 5.24 0.00 46.93 4.57
556 557 1.519408 TTCTTAACGGGCTGAAGCAC 58.481 50.000 0.00 0.00 44.36 4.40
557 558 2.487762 CAATTCTTAACGGGCTGAAGCA 59.512 45.455 0.00 0.00 44.36 3.91
558 559 2.747446 TCAATTCTTAACGGGCTGAAGC 59.253 45.455 0.00 0.00 41.14 3.86
559 560 4.003648 AGTCAATTCTTAACGGGCTGAAG 58.996 43.478 0.00 0.00 0.00 3.02
560 561 4.015872 AGTCAATTCTTAACGGGCTGAA 57.984 40.909 0.00 0.00 0.00 3.02
561 562 3.695830 AGTCAATTCTTAACGGGCTGA 57.304 42.857 0.00 0.00 0.00 4.26
562 563 3.309954 GCTAGTCAATTCTTAACGGGCTG 59.690 47.826 0.00 0.00 0.00 4.85
563 564 3.532542 GCTAGTCAATTCTTAACGGGCT 58.467 45.455 0.00 0.00 0.00 5.19
564 565 2.612672 GGCTAGTCAATTCTTAACGGGC 59.387 50.000 0.00 0.00 0.00 6.13
565 566 3.203716 GGGCTAGTCAATTCTTAACGGG 58.796 50.000 0.00 0.00 0.00 5.28
566 567 3.869065 TGGGCTAGTCAATTCTTAACGG 58.131 45.455 0.00 0.00 0.00 4.44
567 568 5.873179 TTTGGGCTAGTCAATTCTTAACG 57.127 39.130 0.00 0.00 0.00 3.18
568 569 8.903820 ACATATTTGGGCTAGTCAATTCTTAAC 58.096 33.333 0.00 0.00 0.00 2.01
569 570 9.120538 GACATATTTGGGCTAGTCAATTCTTAA 57.879 33.333 0.00 0.00 0.00 1.85
570 571 7.441157 CGACATATTTGGGCTAGTCAATTCTTA 59.559 37.037 0.00 0.00 0.00 2.10
571 572 6.260936 CGACATATTTGGGCTAGTCAATTCTT 59.739 38.462 0.00 0.00 0.00 2.52
572 573 5.760253 CGACATATTTGGGCTAGTCAATTCT 59.240 40.000 0.00 0.00 0.00 2.40
573 574 5.527582 ACGACATATTTGGGCTAGTCAATTC 59.472 40.000 0.00 0.00 0.00 2.17
574 575 5.437060 ACGACATATTTGGGCTAGTCAATT 58.563 37.500 0.00 0.00 0.00 2.32
575 576 5.036117 ACGACATATTTGGGCTAGTCAAT 57.964 39.130 0.00 0.00 0.00 2.57
576 577 4.081365 TGACGACATATTTGGGCTAGTCAA 60.081 41.667 0.00 0.00 33.85 3.18
577 578 3.449377 TGACGACATATTTGGGCTAGTCA 59.551 43.478 0.00 0.00 34.29 3.41
578 579 4.051922 CTGACGACATATTTGGGCTAGTC 58.948 47.826 0.00 0.00 0.00 2.59
579 580 3.451178 ACTGACGACATATTTGGGCTAGT 59.549 43.478 0.00 0.00 0.00 2.57
580 581 4.060038 ACTGACGACATATTTGGGCTAG 57.940 45.455 0.00 0.00 0.00 3.42
581 582 5.801531 ATACTGACGACATATTTGGGCTA 57.198 39.130 0.00 0.00 0.00 3.93
582 583 4.689612 ATACTGACGACATATTTGGGCT 57.310 40.909 0.00 0.00 0.00 5.19
583 584 7.435068 AAATATACTGACGACATATTTGGGC 57.565 36.000 0.00 0.00 34.90 5.36
590 591 9.304731 GGTTGTGTTAAATATACTGACGACATA 57.695 33.333 0.00 0.00 0.00 2.29
591 592 7.820386 TGGTTGTGTTAAATATACTGACGACAT 59.180 33.333 0.00 0.00 0.00 3.06
592 593 7.153315 TGGTTGTGTTAAATATACTGACGACA 58.847 34.615 0.00 0.00 0.00 4.35
593 594 7.543172 TCTGGTTGTGTTAAATATACTGACGAC 59.457 37.037 0.00 0.00 0.00 4.34
594 595 7.604549 TCTGGTTGTGTTAAATATACTGACGA 58.395 34.615 0.00 0.00 0.00 4.20
595 596 7.821595 TCTGGTTGTGTTAAATATACTGACG 57.178 36.000 0.00 0.00 0.00 4.35
596 597 8.995220 TGTTCTGGTTGTGTTAAATATACTGAC 58.005 33.333 0.00 0.00 0.00 3.51
597 598 9.562408 TTGTTCTGGTTGTGTTAAATATACTGA 57.438 29.630 0.00 0.00 0.00 3.41
607 608 9.175312 TGTAGTTATTTTGTTCTGGTTGTGTTA 57.825 29.630 0.00 0.00 0.00 2.41
608 609 7.971722 GTGTAGTTATTTTGTTCTGGTTGTGTT 59.028 33.333 0.00 0.00 0.00 3.32
609 610 7.477494 GTGTAGTTATTTTGTTCTGGTTGTGT 58.523 34.615 0.00 0.00 0.00 3.72
610 611 6.631238 CGTGTAGTTATTTTGTTCTGGTTGTG 59.369 38.462 0.00 0.00 0.00 3.33
611 612 6.539464 TCGTGTAGTTATTTTGTTCTGGTTGT 59.461 34.615 0.00 0.00 0.00 3.32
612 613 6.950545 TCGTGTAGTTATTTTGTTCTGGTTG 58.049 36.000 0.00 0.00 0.00 3.77
613 614 7.556733 TTCGTGTAGTTATTTTGTTCTGGTT 57.443 32.000 0.00 0.00 0.00 3.67
614 615 7.308348 CCATTCGTGTAGTTATTTTGTTCTGGT 60.308 37.037 0.00 0.00 0.00 4.00
615 616 7.021196 CCATTCGTGTAGTTATTTTGTTCTGG 58.979 38.462 0.00 0.00 0.00 3.86
616 617 7.581476 ACCATTCGTGTAGTTATTTTGTTCTG 58.419 34.615 0.00 0.00 0.00 3.02
617 618 7.739498 ACCATTCGTGTAGTTATTTTGTTCT 57.261 32.000 0.00 0.00 0.00 3.01
618 619 9.881529 TTTACCATTCGTGTAGTTATTTTGTTC 57.118 29.630 0.00 0.00 0.00 3.18
619 620 9.887406 CTTTACCATTCGTGTAGTTATTTTGTT 57.113 29.630 0.00 0.00 0.00 2.83
620 621 8.019094 GCTTTACCATTCGTGTAGTTATTTTGT 58.981 33.333 0.00 0.00 0.00 2.83
621 622 8.018520 TGCTTTACCATTCGTGTAGTTATTTTG 58.981 33.333 0.00 0.00 0.00 2.44
622 623 8.101654 TGCTTTACCATTCGTGTAGTTATTTT 57.898 30.769 0.00 0.00 0.00 1.82
623 624 7.675962 TGCTTTACCATTCGTGTAGTTATTT 57.324 32.000 0.00 0.00 0.00 1.40
624 625 7.604927 TCTTGCTTTACCATTCGTGTAGTTATT 59.395 33.333 0.00 0.00 0.00 1.40
625 626 7.101054 TCTTGCTTTACCATTCGTGTAGTTAT 58.899 34.615 0.00 0.00 0.00 1.89
626 627 6.457355 TCTTGCTTTACCATTCGTGTAGTTA 58.543 36.000 0.00 0.00 0.00 2.24
627 628 5.302360 TCTTGCTTTACCATTCGTGTAGTT 58.698 37.500 0.00 0.00 0.00 2.24
628 629 4.890088 TCTTGCTTTACCATTCGTGTAGT 58.110 39.130 0.00 0.00 0.00 2.73
629 630 5.580691 TGATCTTGCTTTACCATTCGTGTAG 59.419 40.000 0.00 0.00 0.00 2.74
630 631 5.483811 TGATCTTGCTTTACCATTCGTGTA 58.516 37.500 0.00 0.00 0.00 2.90
631 632 4.323417 TGATCTTGCTTTACCATTCGTGT 58.677 39.130 0.00 0.00 0.00 4.49
634 635 5.276270 CCATTGATCTTGCTTTACCATTCG 58.724 41.667 0.00 0.00 0.00 3.34
639 640 3.193267 TGTGCCATTGATCTTGCTTTACC 59.807 43.478 0.00 0.00 0.00 2.85
641 642 3.825585 TGTGTGCCATTGATCTTGCTTTA 59.174 39.130 0.00 0.00 0.00 1.85
668 669 3.370672 GCAATTTTATTTTGGGCCAGTCG 59.629 43.478 6.23 0.00 0.00 4.18
674 675 4.091365 GTCGTCTGCAATTTTATTTTGGGC 59.909 41.667 0.00 0.00 0.00 5.36
689 690 0.371645 GCTGCATGTAAGTCGTCTGC 59.628 55.000 0.00 0.00 0.00 4.26
690 691 2.001812 AGCTGCATGTAAGTCGTCTG 57.998 50.000 1.02 0.00 0.00 3.51
691 692 3.868757 TTAGCTGCATGTAAGTCGTCT 57.131 42.857 1.02 0.00 0.00 4.18
715 717 7.750903 GTGCACCTATGAAAGATTTGAAGTAAC 59.249 37.037 5.22 0.00 0.00 2.50
721 723 4.323417 ACGTGCACCTATGAAAGATTTGA 58.677 39.130 12.15 0.00 0.00 2.69
731 733 5.121221 TCATATGTCTACGTGCACCTATG 57.879 43.478 12.15 7.82 0.00 2.23
732 734 5.984695 ATCATATGTCTACGTGCACCTAT 57.015 39.130 12.15 0.00 0.00 2.57
733 735 5.784578 AATCATATGTCTACGTGCACCTA 57.215 39.130 12.15 3.08 0.00 3.08
734 736 4.672587 AATCATATGTCTACGTGCACCT 57.327 40.909 12.15 1.77 0.00 4.00
735 737 4.381863 CGTAATCATATGTCTACGTGCACC 59.618 45.833 21.13 0.00 34.02 5.01
748 750 8.437575 AGGGACTAACATTTTCCGTAATCATAT 58.562 33.333 0.00 0.00 36.02 1.78
751 753 6.057321 AGGGACTAACATTTTCCGTAATCA 57.943 37.500 0.00 0.00 36.02 2.57
758 760 5.125578 GTGAATGGAGGGACTAACATTTTCC 59.874 44.000 0.00 0.00 43.15 3.13
767 769 4.927267 ATGTTTGTGAATGGAGGGACTA 57.073 40.909 0.00 0.00 41.55 2.59
769 771 5.253330 TCTTATGTTTGTGAATGGAGGGAC 58.747 41.667 0.00 0.00 0.00 4.46
770 772 5.512942 TCTTATGTTTGTGAATGGAGGGA 57.487 39.130 0.00 0.00 0.00 4.20
773 775 7.621428 AGACATCTTATGTTTGTGAATGGAG 57.379 36.000 0.00 0.00 45.03 3.86
843 846 8.398665 GGACCACATACAGAATGAAATAAGTTC 58.601 37.037 0.00 0.00 39.69 3.01
844 847 7.888021 TGGACCACATACAGAATGAAATAAGTT 59.112 33.333 0.00 0.00 39.69 2.66
849 852 6.248433 ACTTGGACCACATACAGAATGAAAT 58.752 36.000 0.00 0.00 39.69 2.17
858 861 4.463539 ACACGTATACTTGGACCACATACA 59.536 41.667 13.36 0.00 0.00 2.29
863 866 2.231964 TGGACACGTATACTTGGACCAC 59.768 50.000 18.98 5.70 0.00 4.16
865 868 3.056322 ACTTGGACACGTATACTTGGACC 60.056 47.826 13.36 14.69 0.00 4.46
874 877 8.781196 CACATACTAGTATACTTGGACACGTAT 58.219 37.037 15.03 6.68 31.80 3.06
876 879 6.600822 ACACATACTAGTATACTTGGACACGT 59.399 38.462 15.03 1.85 0.00 4.49
877 880 6.910972 CACACATACTAGTATACTTGGACACG 59.089 42.308 15.03 1.23 0.00 4.49
878 881 7.993101 TCACACATACTAGTATACTTGGACAC 58.007 38.462 15.03 0.00 0.00 3.67
879 882 7.201794 GCTCACACATACTAGTATACTTGGACA 60.202 40.741 15.03 0.00 0.00 4.02
880 883 7.140048 GCTCACACATACTAGTATACTTGGAC 58.860 42.308 15.03 5.16 0.00 4.02
881 884 6.831868 TGCTCACACATACTAGTATACTTGGA 59.168 38.462 15.03 6.17 0.00 3.53
882 885 7.039313 TGCTCACACATACTAGTATACTTGG 57.961 40.000 15.03 7.30 0.00 3.61
883 886 8.191446 AGTTGCTCACACATACTAGTATACTTG 58.809 37.037 15.03 11.79 0.00 3.16
884 887 8.191446 CAGTTGCTCACACATACTAGTATACTT 58.809 37.037 15.03 0.00 0.00 2.24
885 888 7.556635 TCAGTTGCTCACACATACTAGTATACT 59.443 37.037 15.03 10.87 0.00 2.12
886 889 7.704271 TCAGTTGCTCACACATACTAGTATAC 58.296 38.462 15.03 6.78 0.00 1.47
887 890 7.468768 GCTCAGTTGCTCACACATACTAGTATA 60.469 40.741 15.03 0.00 0.00 1.47
888 891 6.681616 GCTCAGTTGCTCACACATACTAGTAT 60.682 42.308 9.71 9.71 0.00 2.12
889 892 5.393135 GCTCAGTTGCTCACACATACTAGTA 60.393 44.000 4.77 4.77 0.00 1.82
890 893 4.619394 GCTCAGTTGCTCACACATACTAGT 60.619 45.833 0.00 0.00 0.00 2.57
891 894 3.862267 GCTCAGTTGCTCACACATACTAG 59.138 47.826 0.00 0.00 0.00 2.57
892 895 3.258123 TGCTCAGTTGCTCACACATACTA 59.742 43.478 0.00 0.00 0.00 1.82
893 896 2.037641 TGCTCAGTTGCTCACACATACT 59.962 45.455 0.00 0.00 0.00 2.12
894 897 2.416747 TGCTCAGTTGCTCACACATAC 58.583 47.619 0.00 0.00 0.00 2.39
895 898 2.837532 TGCTCAGTTGCTCACACATA 57.162 45.000 0.00 0.00 0.00 2.29
1095 1117 1.933853 GGTGCGTGGCTATTTGAGTAG 59.066 52.381 0.00 0.00 0.00 2.57
1096 1118 1.737696 CGGTGCGTGGCTATTTGAGTA 60.738 52.381 0.00 0.00 0.00 2.59
1097 1119 1.019278 CGGTGCGTGGCTATTTGAGT 61.019 55.000 0.00 0.00 0.00 3.41
1098 1120 1.705337 CCGGTGCGTGGCTATTTGAG 61.705 60.000 0.00 0.00 0.00 3.02
1099 1121 1.743623 CCGGTGCGTGGCTATTTGA 60.744 57.895 0.00 0.00 0.00 2.69
1101 1123 2.437716 CCCGGTGCGTGGCTATTT 60.438 61.111 0.00 0.00 0.00 1.40
1115 1137 2.835431 ACGAGATGGAGAGGCCCG 60.835 66.667 0.00 0.00 34.97 6.13
1116 1138 2.851071 CGACGAGATGGAGAGGCCC 61.851 68.421 0.00 0.00 34.97 5.80
1117 1139 1.791103 CTCGACGAGATGGAGAGGCC 61.791 65.000 20.25 0.00 35.21 5.19
1302 1330 2.584608 CTCAGCCCCCGGTACTTG 59.415 66.667 0.00 0.00 0.00 3.16
1620 1651 1.290955 GGACACCATGTTCCGACGA 59.709 57.895 0.00 0.00 0.00 4.20
1899 1930 1.382692 GGAGGAACGGGAGGTAGTCG 61.383 65.000 0.00 0.00 0.00 4.18
2055 2086 1.898154 GAGGTAAGAGAAGGGCGCA 59.102 57.895 10.83 0.00 0.00 6.09
2067 2098 1.801332 GAGCAGCGAGTCGAGGTAA 59.199 57.895 18.61 0.00 0.00 2.85
2304 2341 1.255667 TGACGAAGGCCTGGAGGTAC 61.256 60.000 5.69 0.00 37.57 3.34
3000 3044 0.663269 TGTGACTGTGCTACTTCGCG 60.663 55.000 0.00 0.00 0.00 5.87
3020 3064 4.395854 TCATACAAACTCGCTTGATGCATT 59.604 37.500 0.00 0.00 43.06 3.56
3102 3148 9.646427 GCTCCTCGAAATAAAAGATCAGTATAT 57.354 33.333 0.00 0.00 0.00 0.86
3103 3149 8.088981 GGCTCCTCGAAATAAAAGATCAGTATA 58.911 37.037 0.00 0.00 0.00 1.47
3104 3150 6.931840 GGCTCCTCGAAATAAAAGATCAGTAT 59.068 38.462 0.00 0.00 0.00 2.12
3107 3153 4.210120 CGGCTCCTCGAAATAAAAGATCAG 59.790 45.833 0.00 0.00 0.00 2.90
3108 3154 4.119862 CGGCTCCTCGAAATAAAAGATCA 58.880 43.478 0.00 0.00 0.00 2.92
3109 3155 3.495001 CCGGCTCCTCGAAATAAAAGATC 59.505 47.826 0.00 0.00 0.00 2.75
3111 3157 2.419574 CCCGGCTCCTCGAAATAAAAGA 60.420 50.000 0.00 0.00 0.00 2.52
3112 3158 1.940613 CCCGGCTCCTCGAAATAAAAG 59.059 52.381 0.00 0.00 0.00 2.27
3113 3159 1.279846 ACCCGGCTCCTCGAAATAAAA 59.720 47.619 0.00 0.00 0.00 1.52
3114 3160 0.906775 ACCCGGCTCCTCGAAATAAA 59.093 50.000 0.00 0.00 0.00 1.40
3115 3161 1.779221 TACCCGGCTCCTCGAAATAA 58.221 50.000 0.00 0.00 0.00 1.40
3116 3162 1.684983 CTTACCCGGCTCCTCGAAATA 59.315 52.381 0.00 0.00 0.00 1.40
3117 3163 0.464452 CTTACCCGGCTCCTCGAAAT 59.536 55.000 0.00 0.00 0.00 2.17
3118 3164 0.612732 TCTTACCCGGCTCCTCGAAA 60.613 55.000 0.00 0.00 0.00 3.46
3119 3165 1.000521 TCTTACCCGGCTCCTCGAA 60.001 57.895 0.00 0.00 0.00 3.71
3140 3186 3.190535 TCCTTTCTTAATCGTTTGGCAGC 59.809 43.478 0.00 0.00 0.00 5.25
3143 3189 5.971792 GCTAATCCTTTCTTAATCGTTTGGC 59.028 40.000 0.00 0.00 0.00 4.52
3147 3193 7.103641 TGTCTGCTAATCCTTTCTTAATCGTT 58.896 34.615 0.00 0.00 0.00 3.85
3150 3196 8.900983 AGATGTCTGCTAATCCTTTCTTAATC 57.099 34.615 0.00 0.00 0.00 1.75
3160 3206 5.526846 CCTGAGAAAAGATGTCTGCTAATCC 59.473 44.000 0.00 0.00 0.00 3.01
3169 3215 3.614092 TGCATCCCTGAGAAAAGATGTC 58.386 45.455 0.00 0.00 38.67 3.06
3220 3270 1.395954 GAAAAAGCATCCGACCGGTAC 59.604 52.381 7.34 0.00 36.47 3.34
3226 3276 7.062255 CCTTTCATTAAAGAAAAAGCATCCGAC 59.938 37.037 7.24 0.00 44.14 4.79
3228 3278 6.183360 GCCTTTCATTAAAGAAAAAGCATCCG 60.183 38.462 16.77 2.24 44.14 4.18
3244 3294 2.800250 CTGACCAGAAGGCCTTTCATT 58.200 47.619 21.54 4.78 38.31 2.57
3245 3295 1.615384 GCTGACCAGAAGGCCTTTCAT 60.615 52.381 21.54 6.19 38.31 2.57
3246 3296 0.250901 GCTGACCAGAAGGCCTTTCA 60.251 55.000 21.54 17.80 38.31 2.69
3247 3297 0.037447 AGCTGACCAGAAGGCCTTTC 59.963 55.000 21.54 13.77 39.06 2.62
3248 3298 0.480252 AAGCTGACCAGAAGGCCTTT 59.520 50.000 21.54 2.52 39.06 3.11
3249 3299 0.480252 AAAGCTGACCAGAAGGCCTT 59.520 50.000 20.65 20.65 39.06 4.35
3250 3300 1.362224 TAAAGCTGACCAGAAGGCCT 58.638 50.000 0.00 0.00 39.06 5.19
3251 3301 2.426842 ATAAAGCTGACCAGAAGGCC 57.573 50.000 0.00 0.00 39.06 5.19
3252 3302 4.700213 TGTTAATAAAGCTGACCAGAAGGC 59.300 41.667 0.47 0.00 39.06 4.35
3253 3303 6.599244 TGATGTTAATAAAGCTGACCAGAAGG 59.401 38.462 0.47 0.00 42.21 3.46
3254 3304 7.335422 AGTGATGTTAATAAAGCTGACCAGAAG 59.665 37.037 0.47 0.00 0.00 2.85
3255 3305 7.168219 AGTGATGTTAATAAAGCTGACCAGAA 58.832 34.615 0.47 0.00 0.00 3.02
3256 3306 6.711277 AGTGATGTTAATAAAGCTGACCAGA 58.289 36.000 0.47 0.00 0.00 3.86
3257 3307 6.992063 AGTGATGTTAATAAAGCTGACCAG 57.008 37.500 0.00 0.00 0.00 4.00
3258 3308 7.880713 TGTAAGTGATGTTAATAAAGCTGACCA 59.119 33.333 0.00 0.00 0.00 4.02
3259 3309 8.263940 TGTAAGTGATGTTAATAAAGCTGACC 57.736 34.615 0.00 0.00 0.00 4.02
3260 3310 9.922305 GATGTAAGTGATGTTAATAAAGCTGAC 57.078 33.333 0.00 0.00 0.00 3.51
3261 3311 8.817100 CGATGTAAGTGATGTTAATAAAGCTGA 58.183 33.333 0.00 0.00 0.00 4.26
3262 3312 7.584123 GCGATGTAAGTGATGTTAATAAAGCTG 59.416 37.037 0.00 0.00 0.00 4.24
3263 3313 7.495934 AGCGATGTAAGTGATGTTAATAAAGCT 59.504 33.333 0.00 0.00 0.00 3.74
3264 3314 7.584123 CAGCGATGTAAGTGATGTTAATAAAGC 59.416 37.037 0.00 0.00 0.00 3.51
3265 3315 7.584123 GCAGCGATGTAAGTGATGTTAATAAAG 59.416 37.037 1.22 0.00 0.00 1.85
3266 3316 7.279981 AGCAGCGATGTAAGTGATGTTAATAAA 59.720 33.333 1.22 0.00 0.00 1.40
3267 3317 6.761242 AGCAGCGATGTAAGTGATGTTAATAA 59.239 34.615 1.22 0.00 0.00 1.40
3268 3318 6.280643 AGCAGCGATGTAAGTGATGTTAATA 58.719 36.000 1.22 0.00 0.00 0.98
3269 3319 5.118990 AGCAGCGATGTAAGTGATGTTAAT 58.881 37.500 1.22 0.00 0.00 1.40
3270 3320 4.503910 AGCAGCGATGTAAGTGATGTTAA 58.496 39.130 1.22 0.00 0.00 2.01
3271 3321 4.123497 AGCAGCGATGTAAGTGATGTTA 57.877 40.909 1.22 0.00 0.00 2.41
3272 3322 2.977914 AGCAGCGATGTAAGTGATGTT 58.022 42.857 1.22 0.00 0.00 2.71
3273 3323 2.680312 AGCAGCGATGTAAGTGATGT 57.320 45.000 1.22 0.00 0.00 3.06
3274 3324 5.469373 TTTTAGCAGCGATGTAAGTGATG 57.531 39.130 1.22 0.00 0.00 3.07
3275 3325 6.683974 ATTTTTAGCAGCGATGTAAGTGAT 57.316 33.333 1.22 0.00 0.00 3.06
3276 3326 6.494893 AATTTTTAGCAGCGATGTAAGTGA 57.505 33.333 1.22 0.00 0.00 3.41
3277 3327 8.667987 TTAAATTTTTAGCAGCGATGTAAGTG 57.332 30.769 1.22 0.00 0.00 3.16
3278 3328 9.503427 GATTAAATTTTTAGCAGCGATGTAAGT 57.497 29.630 1.22 0.00 0.00 2.24
3279 3329 9.502145 TGATTAAATTTTTAGCAGCGATGTAAG 57.498 29.630 1.22 0.00 0.00 2.34
3280 3330 9.502145 CTGATTAAATTTTTAGCAGCGATGTAA 57.498 29.630 1.22 0.00 0.00 2.41
3281 3331 8.888716 TCTGATTAAATTTTTAGCAGCGATGTA 58.111 29.630 1.22 0.00 32.07 2.29
3282 3332 7.761409 TCTGATTAAATTTTTAGCAGCGATGT 58.239 30.769 1.22 0.00 32.07 3.06
3283 3333 8.619146 TTCTGATTAAATTTTTAGCAGCGATG 57.381 30.769 8.18 0.00 32.07 3.84
3284 3334 9.638239 TTTTCTGATTAAATTTTTAGCAGCGAT 57.362 25.926 8.18 0.00 32.07 4.58
3285 3335 8.911662 GTTTTCTGATTAAATTTTTAGCAGCGA 58.088 29.630 8.18 0.00 32.07 4.93
3286 3336 8.162245 GGTTTTCTGATTAAATTTTTAGCAGCG 58.838 33.333 8.18 0.00 32.07 5.18
3287 3337 8.162245 CGGTTTTCTGATTAAATTTTTAGCAGC 58.838 33.333 8.18 0.00 32.07 5.25
3288 3338 8.647226 CCGGTTTTCTGATTAAATTTTTAGCAG 58.353 33.333 6.99 6.99 32.69 4.24
3289 3339 7.600752 CCCGGTTTTCTGATTAAATTTTTAGCA 59.399 33.333 0.00 0.00 0.00 3.49
3290 3340 7.064134 CCCCGGTTTTCTGATTAAATTTTTAGC 59.936 37.037 0.00 0.00 0.00 3.09
3291 3341 8.308207 TCCCCGGTTTTCTGATTAAATTTTTAG 58.692 33.333 0.00 0.00 0.00 1.85
3292 3342 8.191534 TCCCCGGTTTTCTGATTAAATTTTTA 57.808 30.769 0.00 0.00 0.00 1.52
3293 3343 7.068686 TCCCCGGTTTTCTGATTAAATTTTT 57.931 32.000 0.00 0.00 0.00 1.94
3294 3344 6.295632 CCTCCCCGGTTTTCTGATTAAATTTT 60.296 38.462 0.00 0.00 0.00 1.82
3295 3345 5.186992 CCTCCCCGGTTTTCTGATTAAATTT 59.813 40.000 0.00 0.00 0.00 1.82
3296 3346 4.709886 CCTCCCCGGTTTTCTGATTAAATT 59.290 41.667 0.00 0.00 0.00 1.82
3297 3347 4.278310 CCTCCCCGGTTTTCTGATTAAAT 58.722 43.478 0.00 0.00 0.00 1.40
3298 3348 3.692690 CCTCCCCGGTTTTCTGATTAAA 58.307 45.455 0.00 0.00 0.00 1.52
3299 3349 2.619590 GCCTCCCCGGTTTTCTGATTAA 60.620 50.000 0.00 0.00 34.25 1.40
3300 3350 1.064979 GCCTCCCCGGTTTTCTGATTA 60.065 52.381 0.00 0.00 34.25 1.75
3301 3351 0.323451 GCCTCCCCGGTTTTCTGATT 60.323 55.000 0.00 0.00 34.25 2.57
3302 3352 1.303282 GCCTCCCCGGTTTTCTGAT 59.697 57.895 0.00 0.00 34.25 2.90
3303 3353 2.754375 GCCTCCCCGGTTTTCTGA 59.246 61.111 0.00 0.00 34.25 3.27
3304 3354 2.361230 GGCCTCCCCGGTTTTCTG 60.361 66.667 0.00 0.00 34.25 3.02
3305 3355 2.211468 GATGGCCTCCCCGGTTTTCT 62.211 60.000 3.32 0.00 35.87 2.52
3306 3356 1.753078 GATGGCCTCCCCGGTTTTC 60.753 63.158 3.32 0.00 35.87 2.29
3307 3357 2.359011 GATGGCCTCCCCGGTTTT 59.641 61.111 3.32 0.00 35.87 2.43
3308 3358 3.739613 GGATGGCCTCCCCGGTTT 61.740 66.667 3.32 0.00 38.19 3.27
3313 3363 2.929964 TTTGGTGGATGGCCTCCCC 61.930 63.158 15.98 15.76 45.39 4.81
3314 3364 1.682344 GTTTGGTGGATGGCCTCCC 60.682 63.158 15.98 11.83 45.39 4.30
3315 3365 1.682344 GGTTTGGTGGATGGCCTCC 60.682 63.158 3.32 9.38 46.03 4.30
3316 3366 0.541764 TTGGTTTGGTGGATGGCCTC 60.542 55.000 3.32 0.00 34.31 4.70
3317 3367 0.542702 CTTGGTTTGGTGGATGGCCT 60.543 55.000 3.32 0.00 34.31 5.19
3318 3368 1.543944 CCTTGGTTTGGTGGATGGCC 61.544 60.000 0.00 0.00 0.00 5.36
3319 3369 1.543944 CCCTTGGTTTGGTGGATGGC 61.544 60.000 0.00 0.00 0.00 4.40
3320 3370 0.904394 CCCCTTGGTTTGGTGGATGG 60.904 60.000 0.00 0.00 0.00 3.51
3321 3371 0.904394 CCCCCTTGGTTTGGTGGATG 60.904 60.000 0.00 0.00 0.00 3.51
3322 3372 1.077298 TCCCCCTTGGTTTGGTGGAT 61.077 55.000 0.00 0.00 34.77 3.41
3323 3373 1.297409 TTCCCCCTTGGTTTGGTGGA 61.297 55.000 0.00 0.00 34.77 4.02
3324 3374 0.178906 ATTCCCCCTTGGTTTGGTGG 60.179 55.000 0.00 0.00 34.77 4.61
3325 3375 1.728323 AATTCCCCCTTGGTTTGGTG 58.272 50.000 0.00 0.00 34.77 4.17
3675 3725 5.964477 AGAATGGGTGTAGGAAGTTGATCTA 59.036 40.000 0.00 0.00 0.00 1.98
3676 3726 4.785376 AGAATGGGTGTAGGAAGTTGATCT 59.215 41.667 0.00 0.00 0.00 2.75
3677 3727 5.104259 AGAATGGGTGTAGGAAGTTGATC 57.896 43.478 0.00 0.00 0.00 2.92
3678 3728 5.520748 AAGAATGGGTGTAGGAAGTTGAT 57.479 39.130 0.00 0.00 0.00 2.57
3679 3729 4.993705 AAGAATGGGTGTAGGAAGTTGA 57.006 40.909 0.00 0.00 0.00 3.18
3680 3730 6.405278 AAAAAGAATGGGTGTAGGAAGTTG 57.595 37.500 0.00 0.00 0.00 3.16
3703 3753 2.030628 GCTACGCTGGCCACTTTAAAAA 60.031 45.455 0.00 0.00 0.00 1.94
3704 3754 1.538075 GCTACGCTGGCCACTTTAAAA 59.462 47.619 0.00 0.00 0.00 1.52
3705 3755 1.161843 GCTACGCTGGCCACTTTAAA 58.838 50.000 0.00 0.00 0.00 1.52
3706 3756 0.323629 AGCTACGCTGGCCACTTTAA 59.676 50.000 0.00 0.00 37.57 1.52
3707 3757 1.980052 AGCTACGCTGGCCACTTTA 59.020 52.632 0.00 0.00 37.57 1.85
3708 3758 2.750350 AGCTACGCTGGCCACTTT 59.250 55.556 0.00 0.00 37.57 2.66
3717 3767 1.529865 GAAACGAAAACCAGCTACGCT 59.470 47.619 0.00 0.00 40.77 5.07
3718 3768 1.262151 TGAAACGAAAACCAGCTACGC 59.738 47.619 0.00 0.00 0.00 4.42
3719 3769 3.806316 ATGAAACGAAAACCAGCTACG 57.194 42.857 0.00 0.00 0.00 3.51
3720 3770 5.567915 GCTAAATGAAACGAAAACCAGCTAC 59.432 40.000 0.00 0.00 0.00 3.58
3721 3771 5.239744 TGCTAAATGAAACGAAAACCAGCTA 59.760 36.000 0.00 0.00 0.00 3.32
3722 3772 4.037446 TGCTAAATGAAACGAAAACCAGCT 59.963 37.500 0.00 0.00 0.00 4.24
3723 3773 4.295051 TGCTAAATGAAACGAAAACCAGC 58.705 39.130 0.00 0.00 0.00 4.85
3724 3774 4.917415 CCTGCTAAATGAAACGAAAACCAG 59.083 41.667 0.00 0.00 0.00 4.00
3725 3775 4.261825 CCCTGCTAAATGAAACGAAAACCA 60.262 41.667 0.00 0.00 0.00 3.67
3726 3776 4.022676 TCCCTGCTAAATGAAACGAAAACC 60.023 41.667 0.00 0.00 0.00 3.27
3727 3777 5.048991 TCTCCCTGCTAAATGAAACGAAAAC 60.049 40.000 0.00 0.00 0.00 2.43
3728 3778 5.067273 TCTCCCTGCTAAATGAAACGAAAA 58.933 37.500 0.00 0.00 0.00 2.29
3729 3779 4.647611 TCTCCCTGCTAAATGAAACGAAA 58.352 39.130 0.00 0.00 0.00 3.46
3730 3780 4.280436 TCTCCCTGCTAAATGAAACGAA 57.720 40.909 0.00 0.00 0.00 3.85
3731 3781 3.973206 TCTCCCTGCTAAATGAAACGA 57.027 42.857 0.00 0.00 0.00 3.85
3732 3782 4.455877 ACTTTCTCCCTGCTAAATGAAACG 59.544 41.667 0.00 0.00 0.00 3.60
3733 3783 5.966742 ACTTTCTCCCTGCTAAATGAAAC 57.033 39.130 0.00 0.00 0.00 2.78
3734 3784 7.001674 TGTAACTTTCTCCCTGCTAAATGAAA 58.998 34.615 0.00 0.00 0.00 2.69
3735 3785 6.539173 TGTAACTTTCTCCCTGCTAAATGAA 58.461 36.000 0.00 0.00 0.00 2.57
3736 3786 6.013725 TCTGTAACTTTCTCCCTGCTAAATGA 60.014 38.462 0.00 0.00 0.00 2.57
3737 3787 6.173339 TCTGTAACTTTCTCCCTGCTAAATG 58.827 40.000 0.00 0.00 0.00 2.32
3738 3788 6.374417 TCTGTAACTTTCTCCCTGCTAAAT 57.626 37.500 0.00 0.00 0.00 1.40
3739 3789 5.818678 TCTGTAACTTTCTCCCTGCTAAA 57.181 39.130 0.00 0.00 0.00 1.85
3740 3790 5.818678 TTCTGTAACTTTCTCCCTGCTAA 57.181 39.130 0.00 0.00 0.00 3.09
3741 3791 5.307196 AGTTTCTGTAACTTTCTCCCTGCTA 59.693 40.000 0.00 0.00 44.73 3.49
3742 3792 4.103311 AGTTTCTGTAACTTTCTCCCTGCT 59.897 41.667 0.00 0.00 44.73 4.24
3743 3793 4.214332 CAGTTTCTGTAACTTTCTCCCTGC 59.786 45.833 0.00 0.00 44.73 4.85
3744 3794 5.931441 CAGTTTCTGTAACTTTCTCCCTG 57.069 43.478 0.00 0.00 44.73 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.