Multiple sequence alignment - TraesCS2D01G289600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G289600 chr2D 100.000 3236 0 0 1 3236 371700720 371703955 0.000000e+00 5976.0
1 TraesCS2D01G289600 chr2D 98.214 56 1 0 3181 3236 371784529 371784584 7.390000e-17 99.0
2 TraesCS2D01G289600 chr2A 95.201 3042 83 20 1 3007 502335115 502338128 0.000000e+00 4750.0
3 TraesCS2D01G289600 chr2A 96.757 185 6 0 2994 3178 502338525 502338709 3.140000e-80 309.0
4 TraesCS2D01G289600 chr2B 94.863 2161 76 10 664 2796 440826017 440828170 0.000000e+00 3343.0
5 TraesCS2D01G289600 chr2B 91.194 670 31 7 1 667 440825105 440825749 0.000000e+00 885.0
6 TraesCS2D01G289600 chr2B 98.246 57 1 0 3180 3236 530722807 530722863 2.050000e-17 100.0
7 TraesCS2D01G289600 chr2B 100.000 33 0 0 2798 2830 440828194 440828226 9.690000e-06 62.1
8 TraesCS2D01G289600 chr1B 91.243 1142 92 6 1286 2425 248233450 248234585 0.000000e+00 1548.0
9 TraesCS2D01G289600 chr3A 90.806 1142 91 3 1286 2425 688139051 688140180 0.000000e+00 1515.0
10 TraesCS2D01G289600 chrUn 91.315 426 33 3 2004 2425 90338667 90339092 2.160000e-161 579.0
11 TraesCS2D01G289600 chrUn 91.315 426 33 3 2004 2425 290522892 290523317 2.160000e-161 579.0
12 TraesCS2D01G289600 chr1A 91.018 334 26 2 2096 2425 9820058 9819725 6.370000e-122 448.0
13 TraesCS2D01G289600 chr3D 96.610 59 2 0 3178 3236 14313706 14313648 7.390000e-17 99.0
14 TraesCS2D01G289600 chr3B 98.214 56 1 0 3181 3236 182497666 182497611 7.390000e-17 99.0
15 TraesCS2D01G289600 chr7B 96.429 56 2 0 3181 3236 401131277 401131332 3.440000e-15 93.5
16 TraesCS2D01G289600 chr6A 96.429 56 2 0 3181 3236 559451602 559451657 3.440000e-15 93.5
17 TraesCS2D01G289600 chr6A 96.429 56 2 0 3181 3236 559478868 559478923 3.440000e-15 93.5
18 TraesCS2D01G289600 chr6A 96.429 56 2 0 3181 3236 559482308 559482363 3.440000e-15 93.5
19 TraesCS2D01G289600 chr6B 94.828 58 3 0 3179 3236 719319210 719319267 1.240000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G289600 chr2D 371700720 371703955 3235 False 5976.000000 5976 100.000000 1 3236 1 chr2D.!!$F1 3235
1 TraesCS2D01G289600 chr2A 502335115 502338709 3594 False 2529.500000 4750 95.979000 1 3178 2 chr2A.!!$F1 3177
2 TraesCS2D01G289600 chr2B 440825105 440828226 3121 False 1430.033333 3343 95.352333 1 2830 3 chr2B.!!$F2 2829
3 TraesCS2D01G289600 chr1B 248233450 248234585 1135 False 1548.000000 1548 91.243000 1286 2425 1 chr1B.!!$F1 1139
4 TraesCS2D01G289600 chr3A 688139051 688140180 1129 False 1515.000000 1515 90.806000 1286 2425 1 chr3A.!!$F1 1139

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 666 0.392327 CACCCAGACACACACACACA 60.392 55.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2308 2629 0.665835 CACTTGTGGCGCCTTACAAA 59.334 50.0 29.7 13.17 36.47 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
351 353 3.024547 CACCTACTTCTCGATCTGGGAA 58.975 50.000 0.00 0.00 0.00 3.97
388 390 4.148825 CGGAAGGAGCCGTGGGAG 62.149 72.222 0.00 0.00 46.07 4.30
504 506 0.756070 CTCTACTTCCGGACCCCCTC 60.756 65.000 1.83 0.00 0.00 4.30
535 537 4.824515 ACGCCGAGGAGGAGGAGG 62.825 72.222 0.00 0.00 44.78 4.30
536 538 4.507916 CGCCGAGGAGGAGGAGGA 62.508 72.222 0.00 0.00 45.00 3.71
537 539 2.520741 GCCGAGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 45.00 3.69
645 655 1.956170 CGCACTGTCACACCCAGAC 60.956 63.158 0.00 0.00 36.55 3.51
655 665 0.392461 ACACCCAGACACACACACAC 60.392 55.000 0.00 0.00 0.00 3.82
656 666 0.392327 CACCCAGACACACACACACA 60.392 55.000 0.00 0.00 0.00 3.72
657 667 0.392461 ACCCAGACACACACACACAC 60.392 55.000 0.00 0.00 0.00 3.82
658 668 0.392327 CCCAGACACACACACACACA 60.392 55.000 0.00 0.00 0.00 3.72
659 669 0.726827 CCAGACACACACACACACAC 59.273 55.000 0.00 0.00 0.00 3.82
661 671 1.803555 CAGACACACACACACACACAA 59.196 47.619 0.00 0.00 0.00 3.33
662 672 2.076100 AGACACACACACACACACAAG 58.924 47.619 0.00 0.00 0.00 3.16
672 947 3.126831 CACACACACAAGAGAGAGTTCC 58.873 50.000 0.00 0.00 0.00 3.62
822 1114 3.159353 TGGATCTATCGGTCAAACGTG 57.841 47.619 0.00 0.00 34.94 4.49
897 1189 1.210967 CTCGAGTACTCCTCCACCTCT 59.789 57.143 17.23 0.00 36.82 3.69
959 1255 4.093952 CGTTGCTTGCGCTCCCTG 62.094 66.667 9.73 0.00 36.97 4.45
960 1256 4.410743 GTTGCTTGCGCTCCCTGC 62.411 66.667 9.73 6.34 36.97 4.85
1278 1574 1.450312 CTGGGGCAAGATCCACGTC 60.450 63.158 0.00 0.00 30.15 4.34
1279 1575 2.184020 CTGGGGCAAGATCCACGTCA 62.184 60.000 0.00 0.00 30.15 4.35
1336 1632 1.755008 GAGGACGAGGAGGACAGGG 60.755 68.421 0.00 0.00 0.00 4.45
1805 2102 4.498520 CGCTGGCCTCGTCATCGT 62.499 66.667 3.32 0.00 38.33 3.73
2191 2488 1.893808 CGGCTGTTCCTTGTGCACT 60.894 57.895 19.41 0.00 0.00 4.40
2197 2494 1.270094 TGTTCCTTGTGCACTACCTCG 60.270 52.381 19.41 0.00 0.00 4.63
2236 2557 0.527385 CGCTGAGTTGCCTCTCTAGC 60.527 60.000 13.77 13.77 38.61 3.42
2301 2622 7.029563 AGAATAGTTTCATTTTTCATGTCGGC 58.970 34.615 0.00 0.00 34.08 5.54
2308 2629 2.119484 TTTTCATGTCGGCGACCCCT 62.119 55.000 34.28 17.94 0.00 4.79
2323 2644 4.073052 CCTTTGTAAGGCGCCACA 57.927 55.556 31.54 22.76 42.78 4.17
2324 2645 2.336341 CCTTTGTAAGGCGCCACAA 58.664 52.632 31.54 27.24 42.78 3.33
2407 2730 6.198403 GCATTCATTGTCTATTGCTTGACATG 59.802 38.462 0.00 0.00 41.93 3.21
2665 2990 3.768757 TGGAAGTTCTATTTTGGCCCATG 59.231 43.478 0.00 0.00 0.00 3.66
2674 2999 9.023962 GTTCTATTTTGGCCCATGATTGATATA 57.976 33.333 0.00 0.00 0.00 0.86
2796 3122 5.639082 GCAGCTGCCACAAAATACTTTAATT 59.361 36.000 28.76 0.00 34.31 1.40
2891 3239 2.846039 TCTAACGAATCGCCTGAGAC 57.154 50.000 1.15 0.00 0.00 3.36
2899 3247 2.322355 ATCGCCTGAGACCATTCTTG 57.678 50.000 0.00 0.00 29.47 3.02
2985 3333 9.349713 ACATGTATCCTGTTGTTTCTTTCTTTA 57.650 29.630 0.00 0.00 0.00 1.85
3027 3785 9.668497 ATTCTATAAACAACAGGAAGGACTTAC 57.332 33.333 0.00 0.00 0.00 2.34
3066 3824 6.540438 AATGATGCTTTGATGGATTTGACT 57.460 33.333 0.00 0.00 0.00 3.41
3087 3845 1.872952 GCAAAACATGGCCTTGGAAAC 59.127 47.619 21.67 4.68 0.00 2.78
3173 3931 8.842280 TCTTGTAATGATTTAAAGGTTGAACGT 58.158 29.630 0.00 0.00 0.00 3.99
3179 3937 7.861176 TGATTTAAAGGTTGAACGTTATTGC 57.139 32.000 0.00 0.00 0.00 3.56
3180 3938 7.653647 TGATTTAAAGGTTGAACGTTATTGCT 58.346 30.769 0.00 0.00 0.00 3.91
3181 3939 7.593273 TGATTTAAAGGTTGAACGTTATTGCTG 59.407 33.333 0.00 0.00 0.00 4.41
3182 3940 4.911514 AAAGGTTGAACGTTATTGCTGT 57.088 36.364 0.00 0.00 0.00 4.40
3183 3941 4.911514 AAGGTTGAACGTTATTGCTGTT 57.088 36.364 0.00 0.00 0.00 3.16
3184 3942 6.380095 AAAGGTTGAACGTTATTGCTGTTA 57.620 33.333 0.00 0.00 0.00 2.41
3185 3943 5.607119 AGGTTGAACGTTATTGCTGTTAG 57.393 39.130 0.00 0.00 0.00 2.34
3186 3944 5.061179 AGGTTGAACGTTATTGCTGTTAGT 58.939 37.500 0.00 0.00 0.00 2.24
3187 3945 5.529800 AGGTTGAACGTTATTGCTGTTAGTT 59.470 36.000 0.00 0.00 0.00 2.24
3188 3946 5.623673 GGTTGAACGTTATTGCTGTTAGTTG 59.376 40.000 0.00 0.00 0.00 3.16
3189 3947 5.351233 TGAACGTTATTGCTGTTAGTTGG 57.649 39.130 0.00 0.00 0.00 3.77
3190 3948 5.057819 TGAACGTTATTGCTGTTAGTTGGA 58.942 37.500 0.00 0.00 0.00 3.53
3191 3949 5.527951 TGAACGTTATTGCTGTTAGTTGGAA 59.472 36.000 0.00 0.00 0.00 3.53
3192 3950 6.038382 TGAACGTTATTGCTGTTAGTTGGAAA 59.962 34.615 0.00 0.00 0.00 3.13
3193 3951 5.997385 ACGTTATTGCTGTTAGTTGGAAAG 58.003 37.500 0.00 0.00 0.00 2.62
3194 3952 5.761234 ACGTTATTGCTGTTAGTTGGAAAGA 59.239 36.000 0.00 0.00 0.00 2.52
3195 3953 6.073222 ACGTTATTGCTGTTAGTTGGAAAGAG 60.073 38.462 0.00 0.00 0.00 2.85
3196 3954 6.612306 GTTATTGCTGTTAGTTGGAAAGAGG 58.388 40.000 0.00 0.00 0.00 3.69
3197 3955 4.431416 TTGCTGTTAGTTGGAAAGAGGA 57.569 40.909 0.00 0.00 0.00 3.71
3198 3956 4.008074 TGCTGTTAGTTGGAAAGAGGAG 57.992 45.455 0.00 0.00 0.00 3.69
3199 3957 3.646162 TGCTGTTAGTTGGAAAGAGGAGA 59.354 43.478 0.00 0.00 0.00 3.71
3200 3958 4.287067 TGCTGTTAGTTGGAAAGAGGAGAT 59.713 41.667 0.00 0.00 0.00 2.75
3201 3959 5.221925 TGCTGTTAGTTGGAAAGAGGAGATT 60.222 40.000 0.00 0.00 0.00 2.40
3202 3960 5.123027 GCTGTTAGTTGGAAAGAGGAGATTG 59.877 44.000 0.00 0.00 0.00 2.67
3203 3961 5.003804 TGTTAGTTGGAAAGAGGAGATTGC 58.996 41.667 0.00 0.00 0.00 3.56
3204 3962 3.795688 AGTTGGAAAGAGGAGATTGCA 57.204 42.857 0.00 0.00 0.00 4.08
3205 3963 4.313020 AGTTGGAAAGAGGAGATTGCAT 57.687 40.909 0.00 0.00 0.00 3.96
3206 3964 4.015084 AGTTGGAAAGAGGAGATTGCATG 58.985 43.478 0.00 0.00 0.00 4.06
3207 3965 2.372264 TGGAAAGAGGAGATTGCATGC 58.628 47.619 11.82 11.82 0.00 4.06
3208 3966 2.291089 TGGAAAGAGGAGATTGCATGCA 60.291 45.455 18.46 18.46 0.00 3.96
3209 3967 2.957006 GGAAAGAGGAGATTGCATGCAT 59.043 45.455 23.37 11.80 0.00 3.96
3210 3968 3.004524 GGAAAGAGGAGATTGCATGCATC 59.995 47.826 23.37 19.59 0.00 3.91
3211 3969 1.880271 AGAGGAGATTGCATGCATCG 58.120 50.000 23.37 0.00 0.00 3.84
3212 3970 1.415289 AGAGGAGATTGCATGCATCGA 59.585 47.619 23.37 7.20 0.00 3.59
3213 3971 2.038689 AGAGGAGATTGCATGCATCGAT 59.961 45.455 23.37 12.57 0.00 3.59
3214 3972 3.260128 AGAGGAGATTGCATGCATCGATA 59.740 43.478 23.37 6.30 0.00 2.92
3215 3973 3.999001 GAGGAGATTGCATGCATCGATAA 59.001 43.478 23.37 5.43 0.00 1.75
3216 3974 4.586884 AGGAGATTGCATGCATCGATAAT 58.413 39.130 23.37 10.90 0.00 1.28
3217 3975 5.008331 AGGAGATTGCATGCATCGATAATT 58.992 37.500 23.37 4.36 0.00 1.40
3218 3976 5.123502 AGGAGATTGCATGCATCGATAATTC 59.876 40.000 23.37 12.18 0.00 2.17
3219 3977 5.106436 GGAGATTGCATGCATCGATAATTCA 60.106 40.000 23.37 1.97 0.00 2.57
3220 3978 6.404403 GGAGATTGCATGCATCGATAATTCAT 60.404 38.462 23.37 7.61 0.00 2.57
3221 3979 6.920817 AGATTGCATGCATCGATAATTCATT 58.079 32.000 23.37 0.00 0.00 2.57
3222 3980 6.806739 AGATTGCATGCATCGATAATTCATTG 59.193 34.615 23.37 0.00 0.00 2.82
3223 3981 5.692613 TGCATGCATCGATAATTCATTGA 57.307 34.783 18.46 0.00 0.00 2.57
3224 3982 6.262193 TGCATGCATCGATAATTCATTGAT 57.738 33.333 18.46 0.00 38.16 2.57
3225 3983 6.319399 TGCATGCATCGATAATTCATTGATC 58.681 36.000 18.46 0.00 35.83 2.92
3226 3984 5.451342 GCATGCATCGATAATTCATTGATCG 59.549 40.000 14.21 1.88 42.96 3.69
3227 3985 6.540205 CATGCATCGATAATTCATTGATCGT 58.460 36.000 0.00 0.00 42.37 3.73
3228 3986 5.919196 TGCATCGATAATTCATTGATCGTG 58.081 37.500 0.00 6.61 42.37 4.35
3229 3987 5.466393 TGCATCGATAATTCATTGATCGTGT 59.534 36.000 0.00 0.00 42.37 4.49
3230 3988 5.787062 GCATCGATAATTCATTGATCGTGTG 59.213 40.000 0.00 8.48 42.37 3.82
3231 3989 5.905480 TCGATAATTCATTGATCGTGTGG 57.095 39.130 7.28 0.00 42.37 4.17
3232 3990 5.596845 TCGATAATTCATTGATCGTGTGGA 58.403 37.500 7.28 0.00 42.37 4.02
3233 3991 6.223120 TCGATAATTCATTGATCGTGTGGAT 58.777 36.000 7.28 0.00 42.37 3.41
3234 3992 6.146021 TCGATAATTCATTGATCGTGTGGATG 59.854 38.462 7.28 0.00 42.37 3.51
3235 3993 6.146021 CGATAATTCATTGATCGTGTGGATGA 59.854 38.462 0.38 0.00 38.10 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 261 3.179830 AGTCTAGTAACATTTCGCTGCG 58.820 45.455 17.25 17.25 0.00 5.18
432 434 3.138930 TATCTCCTGCTGCGCGTCC 62.139 63.158 8.43 0.00 0.00 4.79
486 488 1.309006 GAGGGGGTCCGGAAGTAGA 59.691 63.158 5.23 0.00 38.33 2.59
517 519 3.213402 CTCCTCCTCCTCGGCGTC 61.213 72.222 6.85 0.00 0.00 5.19
522 524 2.520741 GCCTCCTCCTCCTCCTCG 60.521 72.222 0.00 0.00 0.00 4.63
645 655 2.345876 TCTCTTGTGTGTGTGTGTGTG 58.654 47.619 0.00 0.00 0.00 3.82
655 665 2.802787 ACGGAACTCTCTCTTGTGTG 57.197 50.000 0.00 0.00 0.00 3.82
656 666 5.391736 CGTATTACGGAACTCTCTCTTGTGT 60.392 44.000 8.36 0.00 38.08 3.72
657 667 5.029014 CGTATTACGGAACTCTCTCTTGTG 58.971 45.833 8.36 0.00 38.08 3.33
658 668 5.232610 CGTATTACGGAACTCTCTCTTGT 57.767 43.478 8.36 0.00 38.08 3.16
672 947 2.190981 GAACAGCAGTCCCGTATTACG 58.809 52.381 9.26 9.26 42.11 3.18
753 1028 3.123620 GTGCGGCTCTCAGGCTTG 61.124 66.667 0.00 0.00 38.85 4.01
1038 1334 2.362120 TCGTCGTCTTCCTCCCCC 60.362 66.667 0.00 0.00 0.00 5.40
1278 1574 3.541831 CGTTCGCCGTCCACGATG 61.542 66.667 0.00 0.00 43.02 3.84
1279 1575 4.789075 CCGTTCGCCGTCCACGAT 62.789 66.667 0.00 0.00 43.02 3.73
1805 2102 2.266372 CGGTAATGGCGTGGGTGA 59.734 61.111 0.00 0.00 0.00 4.02
2089 2386 2.122768 CAGGCTAGGATGGTTCTTCCT 58.877 52.381 7.38 7.38 45.59 3.36
2191 2488 2.420058 TCAGACTGAGCATCGAGGTA 57.580 50.000 0.00 0.00 38.61 3.08
2197 2494 2.559440 GTTGGGATCAGACTGAGCATC 58.441 52.381 21.49 13.32 33.81 3.91
2308 2629 0.665835 CACTTGTGGCGCCTTACAAA 59.334 50.000 29.70 13.17 36.47 2.83
2322 2643 6.093219 AGAGTTGCTGCAGTATAATTCACTTG 59.907 38.462 16.64 0.00 0.00 3.16
2323 2644 6.093219 CAGAGTTGCTGCAGTATAATTCACTT 59.907 38.462 16.64 0.00 37.90 3.16
2324 2645 5.583854 CAGAGTTGCTGCAGTATAATTCACT 59.416 40.000 16.64 9.93 37.90 3.41
2360 2683 5.163764 TGCATAATACCTTGCTCGAAACAAG 60.164 40.000 17.05 17.05 43.36 3.16
2554 2877 6.586463 CAGATTAAAGACTAGAACGAGCACAA 59.414 38.462 0.00 0.00 0.00 3.33
2714 3039 5.009631 TCTTAACTGTGGTATGCAAGCAAT 58.990 37.500 0.00 0.00 37.33 3.56
2796 3122 5.586339 TGAATTTCACGTTTCAGCATCAAA 58.414 33.333 0.00 0.00 0.00 2.69
2891 3239 7.569226 CGGTTAAAACAATCTTTGCAAGAATGG 60.569 37.037 14.41 7.21 41.64 3.16
2899 3247 7.597369 ACCTTTATCGGTTAAAACAATCTTTGC 59.403 33.333 0.00 0.00 31.94 3.68
3027 3785 4.790878 CATCATTTGGAACCATATCAGCG 58.209 43.478 0.00 0.00 0.00 5.18
3066 3824 1.126488 TTCCAAGGCCATGTTTTGCA 58.874 45.000 5.01 0.00 0.00 4.08
3173 3931 6.539173 TCCTCTTTCCAACTAACAGCAATAA 58.461 36.000 0.00 0.00 0.00 1.40
3178 3936 4.273148 TCTCCTCTTTCCAACTAACAGC 57.727 45.455 0.00 0.00 0.00 4.40
3179 3937 5.123027 GCAATCTCCTCTTTCCAACTAACAG 59.877 44.000 0.00 0.00 0.00 3.16
3180 3938 5.003804 GCAATCTCCTCTTTCCAACTAACA 58.996 41.667 0.00 0.00 0.00 2.41
3181 3939 5.003804 TGCAATCTCCTCTTTCCAACTAAC 58.996 41.667 0.00 0.00 0.00 2.34
3182 3940 5.241403 TGCAATCTCCTCTTTCCAACTAA 57.759 39.130 0.00 0.00 0.00 2.24
3183 3941 4.908601 TGCAATCTCCTCTTTCCAACTA 57.091 40.909 0.00 0.00 0.00 2.24
3184 3942 3.795688 TGCAATCTCCTCTTTCCAACT 57.204 42.857 0.00 0.00 0.00 3.16
3185 3943 3.428589 GCATGCAATCTCCTCTTTCCAAC 60.429 47.826 14.21 0.00 0.00 3.77
3186 3944 2.756760 GCATGCAATCTCCTCTTTCCAA 59.243 45.455 14.21 0.00 0.00 3.53
3187 3945 2.291089 TGCATGCAATCTCCTCTTTCCA 60.291 45.455 20.30 0.00 0.00 3.53
3188 3946 2.372264 TGCATGCAATCTCCTCTTTCC 58.628 47.619 20.30 0.00 0.00 3.13
3189 3947 3.303857 CGATGCATGCAATCTCCTCTTTC 60.304 47.826 26.68 12.31 0.00 2.62
3190 3948 2.617308 CGATGCATGCAATCTCCTCTTT 59.383 45.455 26.68 3.17 0.00 2.52
3191 3949 2.158856 TCGATGCATGCAATCTCCTCTT 60.159 45.455 26.68 4.06 0.00 2.85
3192 3950 1.415289 TCGATGCATGCAATCTCCTCT 59.585 47.619 26.68 4.93 0.00 3.69
3193 3951 1.875009 TCGATGCATGCAATCTCCTC 58.125 50.000 26.68 15.37 0.00 3.71
3194 3952 2.563261 ATCGATGCATGCAATCTCCT 57.437 45.000 26.68 6.72 0.00 3.69
3195 3953 4.959596 ATTATCGATGCATGCAATCTCC 57.040 40.909 26.68 10.50 0.00 3.71
3196 3954 5.934921 TGAATTATCGATGCATGCAATCTC 58.065 37.500 26.68 16.92 0.00 2.75
3197 3955 5.952526 TGAATTATCGATGCATGCAATCT 57.047 34.783 26.68 8.52 0.00 2.40
3198 3956 6.804783 TCAATGAATTATCGATGCATGCAATC 59.195 34.615 26.68 19.95 34.05 2.67
3199 3957 6.683715 TCAATGAATTATCGATGCATGCAAT 58.316 32.000 26.68 16.39 34.05 3.56
3200 3958 6.074544 TCAATGAATTATCGATGCATGCAA 57.925 33.333 26.68 9.06 34.05 4.08
3201 3959 5.692613 TCAATGAATTATCGATGCATGCA 57.307 34.783 25.04 25.04 34.05 3.96
3202 3960 5.451342 CGATCAATGAATTATCGATGCATGC 59.549 40.000 11.82 11.82 43.96 4.06
3203 3961 6.464834 CACGATCAATGAATTATCGATGCATG 59.535 38.462 2.46 0.00 43.96 4.06
3204 3962 6.148315 ACACGATCAATGAATTATCGATGCAT 59.852 34.615 8.54 0.00 43.96 3.96
3205 3963 5.466393 ACACGATCAATGAATTATCGATGCA 59.534 36.000 8.54 1.37 43.96 3.96
3206 3964 5.787062 CACACGATCAATGAATTATCGATGC 59.213 40.000 8.54 0.00 43.96 3.91
3207 3965 6.146021 TCCACACGATCAATGAATTATCGATG 59.854 38.462 8.54 10.38 43.96 3.84
3208 3966 6.223120 TCCACACGATCAATGAATTATCGAT 58.777 36.000 13.09 2.16 43.96 3.59
3209 3967 5.596845 TCCACACGATCAATGAATTATCGA 58.403 37.500 13.09 0.00 43.96 3.59
3210 3968 5.905480 TCCACACGATCAATGAATTATCG 57.095 39.130 6.10 6.10 46.02 2.92
3211 3969 7.425577 TCATCCACACGATCAATGAATTATC 57.574 36.000 1.08 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.