Multiple sequence alignment - TraesCS2D01G289200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G289200 chr2D 100.000 5768 0 0 1 5768 371167883 371162116 0.000000e+00 10652.0
1 TraesCS2D01G289200 chr2B 93.367 2352 122 18 1 2330 440226443 440224104 0.000000e+00 3448.0
2 TraesCS2D01G289200 chr2B 94.566 957 25 7 3910 4862 440223132 440222199 0.000000e+00 1454.0
3 TraesCS2D01G289200 chr2B 93.190 558 27 3 3294 3851 440223768 440223222 0.000000e+00 809.0
4 TraesCS2D01G289200 chr2B 95.105 143 7 0 3023 3165 440224102 440223960 5.820000e-55 226.0
5 TraesCS2D01G289200 chr2B 95.098 102 4 1 3195 3295 440223963 440223862 5.980000e-35 159.0
6 TraesCS2D01G289200 chr2A 94.501 2164 84 13 532 2689 501853601 501851467 0.000000e+00 3304.0
7 TraesCS2D01G289200 chr2A 93.772 1140 58 6 2696 3831 501851136 501850006 0.000000e+00 1700.0
8 TraesCS2D01G289200 chr2A 95.374 908 25 9 4015 4906 501850010 501849104 0.000000e+00 1428.0
9 TraesCS2D01G289200 chr2A 81.878 756 111 16 5034 5767 81108460 81109211 1.060000e-171 614.0
10 TraesCS2D01G289200 chr2A 92.035 113 7 2 3827 3939 27741254 27741364 2.150000e-34 158.0
11 TraesCS2D01G289200 chr2A 100.000 29 0 0 340 368 606531169 606531141 3.000000e-03 54.7
12 TraesCS2D01G289200 chr4D 84.840 752 78 18 5042 5765 491736086 491736829 0.000000e+00 725.0
13 TraesCS2D01G289200 chr4D 90.130 385 36 2 435 817 491688404 491688020 3.100000e-137 499.0
14 TraesCS2D01G289200 chr4D 88.557 201 18 5 2372 2572 346468187 346467992 7.470000e-59 239.0
15 TraesCS2D01G289200 chr7D 84.400 750 84 16 5045 5768 104905539 104904797 0.000000e+00 706.0
16 TraesCS2D01G289200 chr7D 79.310 464 72 14 1169 1630 578153887 578154328 2.610000e-78 303.0
17 TraesCS2D01G289200 chr7D 88.442 199 19 4 2373 2571 535309645 535309451 2.690000e-58 237.0
18 TraesCS2D01G289200 chr7D 97.959 98 2 0 3831 3928 168427490 168427393 2.760000e-38 171.0
19 TraesCS2D01G289200 chr7D 100.000 28 0 0 340 367 163350044 163350017 1.000000e-02 52.8
20 TraesCS2D01G289200 chr6A 83.922 765 86 18 5034 5768 131438868 131438111 0.000000e+00 697.0
21 TraesCS2D01G289200 chr6A 86.015 522 60 8 5154 5671 400137498 400136986 1.090000e-151 547.0
22 TraesCS2D01G289200 chr6A 89.655 203 13 2 2370 2572 506642827 506643021 9.590000e-63 252.0
23 TraesCS2D01G289200 chr6A 82.578 287 43 3 5317 5596 22292204 22291918 4.460000e-61 246.0
24 TraesCS2D01G289200 chr3D 85.828 628 74 12 5154 5768 567152085 567151460 0.000000e+00 652.0
25 TraesCS2D01G289200 chr3D 90.551 381 34 2 439 817 381007209 381006829 2.400000e-138 503.0
26 TraesCS2D01G289200 chr3D 89.005 382 42 0 435 816 4404092 4403711 1.880000e-129 473.0
27 TraesCS2D01G289200 chr3D 88.773 383 42 1 435 817 380861845 380861464 8.750000e-128 468.0
28 TraesCS2D01G289200 chr3D 95.146 103 5 0 3831 3933 582796862 582796964 4.620000e-36 163.0
29 TraesCS2D01G289200 chr3D 87.755 49 5 1 324 371 137103721 137103673 8.070000e-04 56.5
30 TraesCS2D01G289200 chr6D 82.595 655 87 10 5034 5671 277697228 277696584 2.350000e-153 553.0
31 TraesCS2D01G289200 chr6D 89.896 386 36 2 435 817 362701817 362701432 1.440000e-135 494.0
32 TraesCS2D01G289200 chr6D 90.547 201 11 2 2372 2572 365846884 365847076 5.730000e-65 259.0
33 TraesCS2D01G289200 chr6D 96.117 103 3 1 3827 3929 217918764 217918865 3.570000e-37 167.0
34 TraesCS2D01G289200 chr6D 92.523 107 5 3 3827 3931 467773579 467773474 3.600000e-32 150.0
35 TraesCS2D01G289200 chr6D 84.615 65 6 4 305 367 40768512 40768450 1.740000e-05 62.1
36 TraesCS2D01G289200 chr6B 84.670 561 68 10 3996 4544 3740810 3740256 1.410000e-150 544.0
37 TraesCS2D01G289200 chr6B 83.894 565 57 16 3996 4544 625288241 625287695 5.160000e-140 508.0
38 TraesCS2D01G289200 chr6B 88.630 387 39 5 435 818 577475178 577475562 3.150000e-127 466.0
39 TraesCS2D01G289200 chr6B 92.254 142 10 1 3546 3687 625288543 625288403 3.520000e-47 200.0
40 TraesCS2D01G289200 chr6B 95.413 109 4 1 3820 3928 475446860 475446753 7.680000e-39 172.0
41 TraesCS2D01G289200 chr1B 84.369 563 61 13 3993 4538 647122334 647122886 1.420000e-145 527.0
42 TraesCS2D01G289200 chr1B 96.907 97 3 0 3832 3928 349352507 349352411 4.620000e-36 163.0
43 TraesCS2D01G289200 chr1B 90.000 120 11 1 3546 3665 647122035 647122153 2.780000e-33 154.0
44 TraesCS2D01G289200 chr3A 82.430 609 66 8 5067 5658 734756827 734757411 1.440000e-135 494.0
45 TraesCS2D01G289200 chr3A 88.601 386 39 3 436 816 59949883 59950268 1.130000e-126 464.0
46 TraesCS2D01G289200 chr5D 81.643 621 85 18 5154 5765 506206344 506205744 6.720000e-134 488.0
47 TraesCS2D01G289200 chr5D 83.186 565 58 15 3996 4544 40895428 40894885 3.130000e-132 483.0
48 TraesCS2D01G289200 chr5D 88.646 229 20 5 3462 3687 40895815 40895590 2.050000e-69 274.0
49 TraesCS2D01G289200 chr5D 87.879 66 8 0 3715 3780 40895589 40895524 1.720000e-10 78.7
50 TraesCS2D01G289200 chr1D 89.378 386 37 4 435 817 481422706 481423090 3.130000e-132 483.0
51 TraesCS2D01G289200 chr1D 95.455 110 2 3 3820 3928 275529308 275529201 7.680000e-39 172.0
52 TraesCS2D01G289200 chr7B 88.550 393 41 4 435 824 620638420 620638029 1.880000e-129 473.0
53 TraesCS2D01G289200 chr7B 89.500 200 17 4 2373 2571 575370680 575370484 3.450000e-62 250.0
54 TraesCS2D01G289200 chr7B 97.000 100 3 0 3832 3931 638511040 638511139 9.940000e-38 169.0
55 TraesCS2D01G289200 chr7B 94.595 37 2 0 337 373 588250435 588250471 2.240000e-04 58.4
56 TraesCS2D01G289200 chr4A 87.805 205 19 6 2369 2572 119071497 119071696 9.660000e-58 235.0
57 TraesCS2D01G289200 chr4A 88.542 192 14 3 2374 2564 97375529 97375713 5.820000e-55 226.0
58 TraesCS2D01G289200 chr4A 96.970 33 1 0 327 359 699568842 699568874 8.070000e-04 56.5
59 TraesCS2D01G289200 chr5B 87.500 200 15 8 2373 2572 192866771 192866582 7.520000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G289200 chr2D 371162116 371167883 5767 True 10652.000000 10652 100.000000 1 5768 1 chr2D.!!$R1 5767
1 TraesCS2D01G289200 chr2B 440222199 440226443 4244 True 1219.200000 3448 94.265200 1 4862 5 chr2B.!!$R1 4861
2 TraesCS2D01G289200 chr2A 501849104 501853601 4497 True 2144.000000 3304 94.549000 532 4906 3 chr2A.!!$R2 4374
3 TraesCS2D01G289200 chr2A 81108460 81109211 751 False 614.000000 614 81.878000 5034 5767 1 chr2A.!!$F2 733
4 TraesCS2D01G289200 chr4D 491736086 491736829 743 False 725.000000 725 84.840000 5042 5765 1 chr4D.!!$F1 723
5 TraesCS2D01G289200 chr7D 104904797 104905539 742 True 706.000000 706 84.400000 5045 5768 1 chr7D.!!$R1 723
6 TraesCS2D01G289200 chr6A 131438111 131438868 757 True 697.000000 697 83.922000 5034 5768 1 chr6A.!!$R2 734
7 TraesCS2D01G289200 chr6A 400136986 400137498 512 True 547.000000 547 86.015000 5154 5671 1 chr6A.!!$R3 517
8 TraesCS2D01G289200 chr3D 567151460 567152085 625 True 652.000000 652 85.828000 5154 5768 1 chr3D.!!$R5 614
9 TraesCS2D01G289200 chr6D 277696584 277697228 644 True 553.000000 553 82.595000 5034 5671 1 chr6D.!!$R2 637
10 TraesCS2D01G289200 chr6B 3740256 3740810 554 True 544.000000 544 84.670000 3996 4544 1 chr6B.!!$R1 548
11 TraesCS2D01G289200 chr6B 625287695 625288543 848 True 354.000000 508 88.074000 3546 4544 2 chr6B.!!$R3 998
12 TraesCS2D01G289200 chr1B 647122035 647122886 851 False 340.500000 527 87.184500 3546 4538 2 chr1B.!!$F1 992
13 TraesCS2D01G289200 chr3A 734756827 734757411 584 False 494.000000 494 82.430000 5067 5658 1 chr3A.!!$F2 591
14 TraesCS2D01G289200 chr5D 506205744 506206344 600 True 488.000000 488 81.643000 5154 5765 1 chr5D.!!$R1 611
15 TraesCS2D01G289200 chr5D 40894885 40895815 930 True 278.566667 483 86.570333 3462 4544 3 chr5D.!!$R2 1082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 724 0.329261 TCCCAAGATGGTGGCTTCAG 59.671 55.000 0.00 0.0 37.34 3.02 F
845 884 0.442310 TTCGGCGAGCATCTTTTTCG 59.558 50.000 10.46 0.0 37.40 3.46 F
2744 3115 0.179089 CCTGCTAAGAGATGCGCTGT 60.179 55.000 9.73 0.0 0.00 4.40 F
2817 3188 0.324923 ATGGCATGACCCAGCAACAT 60.325 50.000 0.00 0.0 38.50 2.71 F
3619 4094 1.615883 TCTGGCGCTCTATTCTCCATC 59.384 52.381 7.64 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2125 0.324943 TTGCTGGCTCCCTGTTACTC 59.675 55.0 0.00 0.00 0.00 2.59 R
2796 3167 0.966875 GTTGCTGGGTCATGCCATGA 60.967 55.0 2.53 2.53 39.65 3.07 R
3619 4094 0.676782 GGGTTCCCATTCCACTCACG 60.677 60.0 2.59 0.00 0.00 4.35 R
3907 4382 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.0 0.00 0.00 0.00 1.40 R
5063 5607 0.179134 GCGCCAGATCTAACGACTGT 60.179 55.0 17.95 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.366401 CCTCATGAACAAGATACTATCATCTGT 58.634 37.037 0.00 0.00 35.42 3.41
80 81 4.690719 TAACCACAGGTGCCGCCG 62.691 66.667 0.00 0.00 43.70 6.46
93 94 2.436646 CGCCGGAGCCACTTTCAT 60.437 61.111 5.05 0.00 34.57 2.57
99 100 1.200020 CGGAGCCACTTTCATTCCAAC 59.800 52.381 0.00 0.00 0.00 3.77
107 108 4.256920 CACTTTCATTCCAACGGAGATCT 58.743 43.478 0.00 0.00 31.21 2.75
131 132 5.046735 TCCTCCTCTCTCTTCAAAAGACATG 60.047 44.000 0.00 0.00 33.12 3.21
151 152 4.079850 ACCCTCAGCTGCGAGCAG 62.080 66.667 19.76 19.76 45.56 4.24
161 162 1.063174 GCTGCGAGCAGGAACAAATAG 59.937 52.381 24.25 0.00 43.77 1.73
162 163 2.350522 CTGCGAGCAGGAACAAATAGT 58.649 47.619 16.69 0.00 40.17 2.12
217 219 1.480954 TGGGGTAAACTCTCTCGATGC 59.519 52.381 0.00 0.00 0.00 3.91
218 220 1.480954 GGGGTAAACTCTCTCGATGCA 59.519 52.381 0.00 0.00 0.00 3.96
219 221 2.093658 GGGGTAAACTCTCTCGATGCAA 60.094 50.000 0.00 0.00 0.00 4.08
235 237 6.042777 TCGATGCAACACCATTAAACAAAAA 58.957 32.000 0.00 0.00 0.00 1.94
264 266 0.831307 GGCCATCGTTACTCCCTTCT 59.169 55.000 0.00 0.00 0.00 2.85
269 271 4.750598 GCCATCGTTACTCCCTTCTTAATC 59.249 45.833 0.00 0.00 0.00 1.75
271 273 6.346096 CCATCGTTACTCCCTTCTTAATCAA 58.654 40.000 0.00 0.00 0.00 2.57
283 285 7.120138 TCCCTTCTTAATCAATCGTACAAAACC 59.880 37.037 0.00 0.00 0.00 3.27
284 286 7.248437 CCTTCTTAATCAATCGTACAAAACCC 58.752 38.462 0.00 0.00 0.00 4.11
286 288 5.933463 TCTTAATCAATCGTACAAAACCCGT 59.067 36.000 0.00 0.00 0.00 5.28
330 332 8.639761 TCATAATAGCTTCTAAGTAACTCCACC 58.360 37.037 0.00 0.00 0.00 4.61
337 339 0.886563 AAGTAACTCCACCCGACTCG 59.113 55.000 0.00 0.00 0.00 4.18
366 370 8.789762 CATATGCTTTCATCATATCCAACTTGA 58.210 33.333 0.00 0.00 35.57 3.02
368 372 5.591472 TGCTTTCATCATATCCAACTTGAGG 59.409 40.000 0.00 0.00 0.00 3.86
372 376 4.079844 TCATCATATCCAACTTGAGGGCAA 60.080 41.667 0.00 0.00 0.00 4.52
381 385 4.020839 CCAACTTGAGGGCAAAATGAGAAT 60.021 41.667 0.00 0.00 32.73 2.40
422 434 6.122277 TGTTTTCATGAAGTGAAGGAGAGTT 58.878 36.000 8.41 0.00 46.85 3.01
437 449 2.563179 GAGAGTTCCCTGACTAGTGCAA 59.437 50.000 0.00 0.00 0.00 4.08
441 453 3.007398 AGTTCCCTGACTAGTGCAAAGAG 59.993 47.826 0.00 0.00 0.00 2.85
443 455 1.677217 CCCTGACTAGTGCAAAGAGGC 60.677 57.143 0.00 0.00 0.00 4.70
460 472 3.197790 CCTGGCAAGGTCGATGCG 61.198 66.667 0.00 0.00 44.75 4.73
470 482 2.847441 AGGTCGATGCGTCAGTATCTA 58.153 47.619 6.75 0.00 37.34 1.98
473 485 4.278669 AGGTCGATGCGTCAGTATCTAATT 59.721 41.667 6.75 0.00 37.34 1.40
475 487 5.117287 GGTCGATGCGTCAGTATCTAATTTC 59.883 44.000 6.75 0.00 37.34 2.17
478 490 5.117745 CGATGCGTCAGTATCTAATTTCAGG 59.882 44.000 6.75 0.00 37.34 3.86
485 497 7.875041 CGTCAGTATCTAATTTCAGGATGGATT 59.125 37.037 0.00 0.00 36.16 3.01
486 498 8.997323 GTCAGTATCTAATTTCAGGATGGATTG 58.003 37.037 0.00 0.00 36.16 2.67
488 500 9.736414 CAGTATCTAATTTCAGGATGGATTGAT 57.264 33.333 0.00 0.00 36.16 2.57
506 518 1.757118 GATGGATGAAGGAGGTGACGA 59.243 52.381 0.00 0.00 0.00 4.20
513 525 0.471211 AAGGAGGTGACGACCCTTGA 60.471 55.000 0.00 0.00 44.40 3.02
514 526 0.471211 AGGAGGTGACGACCCTTGAA 60.471 55.000 0.00 0.00 44.40 2.69
516 528 0.680061 GAGGTGACGACCCTTGAAGT 59.320 55.000 0.00 0.00 44.40 3.01
519 531 1.342174 GGTGACGACCCTTGAAGTGTA 59.658 52.381 0.00 0.00 36.03 2.90
520 532 2.401351 GTGACGACCCTTGAAGTGTAC 58.599 52.381 0.00 0.00 0.00 2.90
528 540 2.143122 CCTTGAAGTGTACGCATGTGT 58.857 47.619 17.35 17.35 0.00 3.72
552 564 2.357517 CTGAAAGTGCGCCGGACT 60.358 61.111 5.10 5.10 0.00 3.85
588 600 3.118038 GTCCAGGTATTGTGGCTTGGATA 60.118 47.826 0.00 0.00 41.74 2.59
589 601 3.721575 TCCAGGTATTGTGGCTTGGATAT 59.278 43.478 0.00 0.00 36.20 1.63
598 610 0.962356 GGCTTGGATATGGCATCCGG 60.962 60.000 1.65 0.00 41.03 5.14
618 630 4.188462 CGGCATTAGATGTTAGGTGTTGA 58.812 43.478 0.00 0.00 0.00 3.18
648 660 4.706842 ATGTTTGGTATTAGGCTCGGAT 57.293 40.909 0.00 0.00 0.00 4.18
688 700 1.249407 GGGGATAGGAGTAGCGACAG 58.751 60.000 0.00 0.00 0.00 3.51
694 706 0.889306 AGGAGTAGCGACAGGTGTTC 59.111 55.000 0.00 0.00 0.00 3.18
703 715 1.826385 GACAGGTGTTCCCAAGATGG 58.174 55.000 0.00 0.00 37.25 3.51
712 724 0.329261 TCCCAAGATGGTGGCTTCAG 59.671 55.000 0.00 0.00 37.34 3.02
713 725 1.318158 CCCAAGATGGTGGCTTCAGC 61.318 60.000 0.00 0.00 37.34 4.26
740 752 9.136952 CTTACTGATATATTACGTTGTAAGGGC 57.863 37.037 0.00 0.00 34.82 5.19
795 807 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
809 823 0.916809 CCGGGGTACATCCTCCTTTT 59.083 55.000 0.00 0.00 36.25 2.27
839 878 1.766143 GCGAATTTCGGCGAGCATCT 61.766 55.000 19.53 0.00 40.84 2.90
840 879 0.652592 CGAATTTCGGCGAGCATCTT 59.347 50.000 10.46 0.37 36.00 2.40
841 880 1.062587 CGAATTTCGGCGAGCATCTTT 59.937 47.619 10.46 0.00 36.00 2.52
842 881 2.476185 CGAATTTCGGCGAGCATCTTTT 60.476 45.455 10.46 0.00 36.00 2.27
843 882 3.501950 GAATTTCGGCGAGCATCTTTTT 58.498 40.909 10.46 0.00 0.00 1.94
844 883 2.611974 TTTCGGCGAGCATCTTTTTC 57.388 45.000 10.46 0.00 0.00 2.29
845 884 0.442310 TTCGGCGAGCATCTTTTTCG 59.558 50.000 10.46 0.00 37.40 3.46
846 885 0.669318 TCGGCGAGCATCTTTTTCGT 60.669 50.000 4.99 0.00 36.74 3.85
847 886 0.519175 CGGCGAGCATCTTTTTCGTG 60.519 55.000 0.00 0.00 36.74 4.35
848 887 0.796312 GGCGAGCATCTTTTTCGTGA 59.204 50.000 0.00 0.00 36.74 4.35
849 888 1.196808 GGCGAGCATCTTTTTCGTGAA 59.803 47.619 0.00 0.00 36.74 3.18
850 889 2.159517 GGCGAGCATCTTTTTCGTGAAT 60.160 45.455 0.00 0.00 36.74 2.57
851 890 3.063452 GGCGAGCATCTTTTTCGTGAATA 59.937 43.478 0.00 0.00 36.74 1.75
852 891 4.436852 GGCGAGCATCTTTTTCGTGAATAA 60.437 41.667 0.00 0.00 36.74 1.40
853 892 5.266242 GCGAGCATCTTTTTCGTGAATAAT 58.734 37.500 0.00 0.00 36.74 1.28
854 893 5.739161 GCGAGCATCTTTTTCGTGAATAATT 59.261 36.000 0.00 0.00 36.74 1.40
855 894 6.905076 GCGAGCATCTTTTTCGTGAATAATTA 59.095 34.615 0.00 0.00 36.74 1.40
856 895 7.428183 GCGAGCATCTTTTTCGTGAATAATTAA 59.572 33.333 0.00 0.00 36.74 1.40
857 896 9.438291 CGAGCATCTTTTTCGTGAATAATTAAT 57.562 29.630 0.00 0.00 0.00 1.40
887 926 3.062234 GCTTGGCGAGTTTACATGTACTC 59.938 47.826 15.90 15.90 37.90 2.59
974 1013 0.538746 GTTTGGGGTTGGTGGTCGAT 60.539 55.000 0.00 0.00 0.00 3.59
1427 1466 2.111972 TCTCCTCCTCCCCCATGTATAC 59.888 54.545 0.00 0.00 0.00 1.47
1450 1489 6.357367 ACCAATCCTTTCGCTACAGATTTAT 58.643 36.000 0.00 0.00 0.00 1.40
1603 1643 6.924913 TTGGTGGATTTGTCATTTGGAATA 57.075 33.333 0.00 0.00 0.00 1.75
1760 1803 5.467063 AGTCTTAGTGCAGCAAAGTCTTTAC 59.533 40.000 0.00 0.00 0.00 2.01
1832 1875 4.857588 AGACAACGATTACATTCTGTCGAC 59.142 41.667 9.11 9.11 38.53 4.20
1908 1952 9.495572 CTAATCCTTCAGGTTAATGGTATCTTC 57.504 37.037 0.00 0.00 36.34 2.87
1951 1995 2.034066 GGCCACTGGTGCAAGCTA 59.966 61.111 0.00 0.00 33.76 3.32
2055 2099 3.610911 CAGGTGAGGGTTCATAACTTCC 58.389 50.000 0.00 0.00 35.39 3.46
2081 2125 9.941991 CTGTTTCTTGTTATTTGAATATTTGCG 57.058 29.630 0.00 0.00 0.00 4.85
2097 2141 1.153549 GCGAGTAACAGGGAGCCAG 60.154 63.158 0.00 0.00 0.00 4.85
2194 2239 2.437281 AGTTGCATATCAGCTGGCTAGT 59.563 45.455 15.13 6.27 34.79 2.57
2317 2362 9.787532 GTTGCTGCTAAATTATCAGTTAAATGA 57.212 29.630 8.22 8.22 0.00 2.57
2363 2408 4.943705 AGACCTATAATTGCAACACCACAG 59.056 41.667 0.00 0.00 0.00 3.66
2366 2411 6.423182 ACCTATAATTGCAACACCACAGTAT 58.577 36.000 0.00 0.00 0.00 2.12
2501 2548 2.113139 CTTCCACGCACCCCTGTT 59.887 61.111 0.00 0.00 0.00 3.16
2548 2595 5.832221 TCCAGTCCTTCAGATCTCTCTTTA 58.168 41.667 0.00 0.00 0.00 1.85
2567 2614 2.446848 CGGACTCCTCCCATGCCAT 61.447 63.158 0.00 0.00 31.93 4.40
2592 2639 6.547141 TGTTTCCTCAATATGGAAGCCTAATG 59.453 38.462 6.84 0.00 43.48 1.90
2594 2641 7.387265 TTCCTCAATATGGAAGCCTAATGTA 57.613 36.000 0.00 0.00 38.53 2.29
2596 2643 7.988937 TCCTCAATATGGAAGCCTAATGTAAT 58.011 34.615 0.00 0.00 0.00 1.89
2628 2675 7.775120 AGAAAATTAACCTATCAGTGGCATTG 58.225 34.615 3.22 3.22 0.00 2.82
2629 2676 5.520376 AATTAACCTATCAGTGGCATTGC 57.480 39.130 4.94 0.00 0.00 3.56
2694 2741 3.474570 CAAGAGGCGCCCCTAGCT 61.475 66.667 26.15 10.29 43.12 3.32
2696 2743 1.382695 AAGAGGCGCCCCTAGCTTA 60.383 57.895 26.15 0.00 43.12 3.09
2697 2744 0.981277 AAGAGGCGCCCCTAGCTTAA 60.981 55.000 26.15 0.00 43.12 1.85
2698 2745 1.227586 GAGGCGCCCCTAGCTTAAC 60.228 63.158 26.15 0.00 43.12 2.01
2699 2746 2.203167 GGCGCCCCTAGCTTAACC 60.203 66.667 18.11 0.00 40.39 2.85
2730 3101 5.660417 TGATCTTCTGTATTCTCTTCCTGCT 59.340 40.000 0.00 0.00 0.00 4.24
2740 3111 2.879002 TCTTCCTGCTAAGAGATGCG 57.121 50.000 0.00 0.00 31.85 4.73
2744 3115 0.179089 CCTGCTAAGAGATGCGCTGT 60.179 55.000 9.73 0.00 0.00 4.40
2765 3136 1.042229 AATGTGCACATGTTGGCTGT 58.958 45.000 31.98 11.74 36.56 4.40
2790 3161 4.620184 CCTACTTCTACGTTGAAAACCTCG 59.380 45.833 13.28 3.81 46.28 4.63
2796 3167 5.111293 TCTACGTTGAAAACCTCGAAGTTT 58.889 37.500 6.32 6.32 46.28 2.66
2817 3188 0.324923 ATGGCATGACCCAGCAACAT 60.325 50.000 0.00 0.00 38.50 2.71
2856 3227 7.128331 CAGAACATAGTATATTGTGCAACTGC 58.872 38.462 0.00 0.00 38.04 4.40
2857 3228 6.260936 AGAACATAGTATATTGTGCAACTGCC 59.739 38.462 0.00 0.00 41.18 4.85
2860 3231 4.131649 AGTATATTGTGCAACTGCCGTA 57.868 40.909 0.00 0.00 41.18 4.02
2904 3275 6.310224 GCAATTTTACTCACTCTCACTCTCTC 59.690 42.308 0.00 0.00 0.00 3.20
2906 3277 7.775053 ATTTTACTCACTCTCACTCTCTCTT 57.225 36.000 0.00 0.00 0.00 2.85
2927 3298 6.240894 TCTTTGCAAAGAGAGAACATACCAT 58.759 36.000 32.86 0.00 39.95 3.55
2931 3302 6.472016 TGCAAAGAGAGAACATACCATTACA 58.528 36.000 0.00 0.00 0.00 2.41
2941 3312 4.777463 ACATACCATTACAACCACTAGCC 58.223 43.478 0.00 0.00 0.00 3.93
2957 3328 3.773119 ACTAGCCGGATCCTTTTGAAGTA 59.227 43.478 5.05 0.00 0.00 2.24
3171 3542 3.623960 CACTACTCGACTCTTCCCTACAG 59.376 52.174 0.00 0.00 0.00 2.74
3182 3553 4.620723 TCTTCCCTACAGAATCTAGCCAA 58.379 43.478 0.00 0.00 0.00 4.52
3281 3653 2.108168 CTCTTAAGTGATCCCCACCGA 58.892 52.381 1.63 0.00 46.87 4.69
3379 3850 5.448926 AAACAGCAAAACAACGACAAATC 57.551 34.783 0.00 0.00 0.00 2.17
3562 4036 2.885135 TCCAACTGCATGATTGACCT 57.115 45.000 0.00 0.00 0.00 3.85
3619 4094 1.615883 TCTGGCGCTCTATTCTCCATC 59.384 52.381 7.64 0.00 0.00 3.51
3720 4195 6.363357 GGCTTTTTCATTGTAAGTAAGCTGTG 59.637 38.462 10.39 0.00 37.32 3.66
3748 4223 4.572985 TCCTGCAAGTGAAAGTCATTTG 57.427 40.909 8.62 8.62 43.99 2.32
3834 4309 7.336679 TGCATTGCAACTTCACTGTTATATACT 59.663 33.333 9.33 0.00 34.76 2.12
3843 4318 5.452255 TCACTGTTATATACTCCCTCCGTT 58.548 41.667 0.00 0.00 0.00 4.44
3847 4322 5.210430 TGTTATATACTCCCTCCGTTCCAA 58.790 41.667 0.00 0.00 0.00 3.53
3851 4326 8.370182 GTTATATACTCCCTCCGTTCCAAAATA 58.630 37.037 0.00 0.00 0.00 1.40
3852 4327 5.703730 ATACTCCCTCCGTTCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
3853 4328 3.951663 ACTCCCTCCGTTCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
3856 4331 3.328343 TCCCTCCGTTCCAAAATAAGTGA 59.672 43.478 0.00 0.00 0.00 3.41
3859 4334 4.392138 CCTCCGTTCCAAAATAAGTGACTC 59.608 45.833 0.00 0.00 0.00 3.36
3861 4336 5.369833 TCCGTTCCAAAATAAGTGACTCAA 58.630 37.500 0.00 0.00 0.00 3.02
3862 4337 5.468746 TCCGTTCCAAAATAAGTGACTCAAG 59.531 40.000 0.00 0.00 0.00 3.02
3868 4343 8.740123 TCCAAAATAAGTGACTCAAGTTTGTA 57.260 30.769 15.07 2.61 0.00 2.41
3869 4344 8.617809 TCCAAAATAAGTGACTCAAGTTTGTAC 58.382 33.333 15.07 0.00 0.00 2.90
3870 4345 8.621286 CCAAAATAAGTGACTCAAGTTTGTACT 58.379 33.333 15.07 0.00 35.68 2.73
3876 4351 8.788325 AAGTGACTCAAGTTTGTACTAACTTT 57.212 30.769 26.14 15.97 43.85 2.66
3877 4352 9.880157 AAGTGACTCAAGTTTGTACTAACTTTA 57.120 29.630 26.14 19.67 43.85 1.85
3878 4353 9.530633 AGTGACTCAAGTTTGTACTAACTTTAG 57.469 33.333 27.69 27.69 43.85 1.85
4043 4556 3.575630 TGGACAGAAATTCTCGAAGACG 58.424 45.455 0.00 0.00 41.26 4.18
4093 4609 5.784750 TCTCGTGCAAGAAATATGTTGAG 57.215 39.130 3.39 0.00 31.69 3.02
4223 4740 3.139077 CCTGCAACTACGGAAAAGAAGT 58.861 45.455 0.00 0.00 0.00 3.01
4364 4890 7.332926 AGACTTGTCATACTTGAGCACATTAAG 59.667 37.037 3.49 0.00 30.85 1.85
4578 5111 2.224161 ACGATGATGAGCTCTTTAGGCC 60.224 50.000 16.19 0.00 0.00 5.19
4862 5398 5.049954 CAGTTAAACGCTGGTAGTTAGCAAA 60.050 40.000 0.00 0.00 41.18 3.68
4863 5399 5.178809 AGTTAAACGCTGGTAGTTAGCAAAG 59.821 40.000 0.00 0.00 41.18 2.77
4868 5412 4.021719 ACGCTGGTAGTTAGCAAAGAAGTA 60.022 41.667 0.00 0.00 41.18 2.24
4876 5420 8.666573 GGTAGTTAGCAAAGAAGTAAAGGATTC 58.333 37.037 0.00 0.00 0.00 2.52
4882 5426 6.655425 AGCAAAGAAGTAAAGGATTCCTGTAC 59.345 38.462 21.25 21.25 42.97 2.90
4891 5435 2.007608 GGATTCCTGTACGCTTCAACC 58.992 52.381 0.00 0.00 0.00 3.77
4906 5450 3.243359 TCAACCTGGAGAAATGGCTTT 57.757 42.857 0.00 0.00 0.00 3.51
4907 5451 3.575805 TCAACCTGGAGAAATGGCTTTT 58.424 40.909 0.00 0.00 0.00 2.27
4908 5452 4.735369 TCAACCTGGAGAAATGGCTTTTA 58.265 39.130 0.00 0.00 0.00 1.52
4909 5453 4.522789 TCAACCTGGAGAAATGGCTTTTAC 59.477 41.667 0.00 0.00 0.00 2.01
4910 5454 4.112634 ACCTGGAGAAATGGCTTTTACA 57.887 40.909 0.00 0.00 0.00 2.41
4911 5455 4.479158 ACCTGGAGAAATGGCTTTTACAA 58.521 39.130 0.00 0.00 0.00 2.41
4912 5456 4.524328 ACCTGGAGAAATGGCTTTTACAAG 59.476 41.667 0.00 0.47 0.00 3.16
4913 5457 4.766891 CCTGGAGAAATGGCTTTTACAAGA 59.233 41.667 0.00 0.00 30.57 3.02
4914 5458 5.243730 CCTGGAGAAATGGCTTTTACAAGAA 59.756 40.000 0.00 0.00 30.57 2.52
4915 5459 6.071165 CCTGGAGAAATGGCTTTTACAAGAAT 60.071 38.462 0.00 0.00 30.57 2.40
4916 5460 6.690530 TGGAGAAATGGCTTTTACAAGAATG 58.309 36.000 0.00 0.00 30.57 2.67
4917 5461 6.267471 TGGAGAAATGGCTTTTACAAGAATGT 59.733 34.615 0.00 0.00 43.74 2.71
4918 5462 7.450014 TGGAGAAATGGCTTTTACAAGAATGTA 59.550 33.333 0.00 0.00 41.05 2.29
4931 5475 6.952773 ACAAGAATGTAACTTAAGGTGCAA 57.047 33.333 15.54 0.00 38.24 4.08
4932 5476 7.524717 ACAAGAATGTAACTTAAGGTGCAAT 57.475 32.000 15.54 7.16 38.24 3.56
4933 5477 8.630054 ACAAGAATGTAACTTAAGGTGCAATA 57.370 30.769 15.54 0.00 38.24 1.90
4934 5478 8.512138 ACAAGAATGTAACTTAAGGTGCAATAC 58.488 33.333 15.54 9.55 38.24 1.89
4935 5479 8.511321 CAAGAATGTAACTTAAGGTGCAATACA 58.489 33.333 15.54 5.46 0.00 2.29
4936 5480 8.630054 AGAATGTAACTTAAGGTGCAATACAA 57.370 30.769 15.54 0.00 0.00 2.41
4937 5481 9.243105 AGAATGTAACTTAAGGTGCAATACAAT 57.757 29.630 15.54 0.00 0.00 2.71
4940 5484 8.271312 TGTAACTTAAGGTGCAATACAATACC 57.729 34.615 9.03 0.00 0.00 2.73
4941 5485 7.883833 TGTAACTTAAGGTGCAATACAATACCA 59.116 33.333 9.03 0.00 35.66 3.25
4942 5486 7.768807 AACTTAAGGTGCAATACAATACCAA 57.231 32.000 7.53 0.00 35.66 3.67
4943 5487 7.768807 ACTTAAGGTGCAATACAATACCAAA 57.231 32.000 7.53 0.00 35.66 3.28
4944 5488 8.184304 ACTTAAGGTGCAATACAATACCAAAA 57.816 30.769 7.53 0.00 35.66 2.44
4945 5489 8.811994 ACTTAAGGTGCAATACAATACCAAAAT 58.188 29.630 7.53 0.00 35.66 1.82
4948 5492 7.954666 AGGTGCAATACAATACCAAAATAGT 57.045 32.000 0.00 0.00 35.66 2.12
4949 5493 8.361169 AGGTGCAATACAATACCAAAATAGTT 57.639 30.769 0.00 0.00 35.66 2.24
4950 5494 8.250332 AGGTGCAATACAATACCAAAATAGTTG 58.750 33.333 0.00 0.00 35.66 3.16
4951 5495 8.247562 GGTGCAATACAATACCAAAATAGTTGA 58.752 33.333 0.00 0.00 33.42 3.18
4952 5496 9.289303 GTGCAATACAATACCAAAATAGTTGAG 57.711 33.333 0.00 0.00 0.00 3.02
4953 5497 9.237187 TGCAATACAATACCAAAATAGTTGAGA 57.763 29.630 0.00 0.00 0.00 3.27
4959 5503 9.308000 ACAATACCAAAATAGTTGAGAAATCCA 57.692 29.630 0.00 0.00 0.00 3.41
4960 5504 9.793252 CAATACCAAAATAGTTGAGAAATCCAG 57.207 33.333 0.00 0.00 0.00 3.86
4961 5505 6.840780 ACCAAAATAGTTGAGAAATCCAGG 57.159 37.500 0.00 0.00 0.00 4.45
4962 5506 6.552008 ACCAAAATAGTTGAGAAATCCAGGA 58.448 36.000 0.00 0.00 0.00 3.86
4963 5507 7.010160 ACCAAAATAGTTGAGAAATCCAGGAA 58.990 34.615 0.00 0.00 0.00 3.36
4964 5508 7.508977 ACCAAAATAGTTGAGAAATCCAGGAAA 59.491 33.333 0.00 0.00 0.00 3.13
4965 5509 8.534496 CCAAAATAGTTGAGAAATCCAGGAAAT 58.466 33.333 0.00 0.00 0.00 2.17
4966 5510 9.933723 CAAAATAGTTGAGAAATCCAGGAAATT 57.066 29.630 0.00 0.00 0.00 1.82
4970 5514 9.753674 ATAGTTGAGAAATCCAGGAAATTTACA 57.246 29.630 2.58 0.00 0.00 2.41
4971 5515 8.655935 AGTTGAGAAATCCAGGAAATTTACAT 57.344 30.769 2.58 0.00 0.00 2.29
4972 5516 9.753674 AGTTGAGAAATCCAGGAAATTTACATA 57.246 29.630 2.58 0.00 0.00 2.29
4978 5522 8.947055 AAATCCAGGAAATTTACATAATGTGC 57.053 30.769 2.58 0.00 0.00 4.57
4979 5523 6.463995 TCCAGGAAATTTACATAATGTGCC 57.536 37.500 2.58 0.00 0.00 5.01
4980 5524 5.362430 TCCAGGAAATTTACATAATGTGCCC 59.638 40.000 2.58 0.00 0.00 5.36
4981 5525 5.363580 CCAGGAAATTTACATAATGTGCCCT 59.636 40.000 2.58 0.00 0.00 5.19
4982 5526 6.549364 CCAGGAAATTTACATAATGTGCCCTA 59.451 38.462 2.58 0.00 0.00 3.53
4983 5527 7.069331 CCAGGAAATTTACATAATGTGCCCTAA 59.931 37.037 2.58 0.00 0.00 2.69
4984 5528 8.474025 CAGGAAATTTACATAATGTGCCCTAAA 58.526 33.333 2.58 0.00 0.00 1.85
4985 5529 9.041354 AGGAAATTTACATAATGTGCCCTAAAA 57.959 29.630 2.58 0.00 0.00 1.52
4986 5530 9.313118 GGAAATTTACATAATGTGCCCTAAAAG 57.687 33.333 0.00 0.00 0.00 2.27
4991 5535 9.868277 TTTACATAATGTGCCCTAAAAGAATTG 57.132 29.630 0.00 0.00 0.00 2.32
4992 5536 6.877236 ACATAATGTGCCCTAAAAGAATTGG 58.123 36.000 0.00 0.00 0.00 3.16
4993 5537 4.824479 AATGTGCCCTAAAAGAATTGGG 57.176 40.909 0.00 0.00 42.41 4.12
4994 5538 2.534990 TGTGCCCTAAAAGAATTGGGG 58.465 47.619 5.33 5.33 39.99 4.96
4996 5540 0.830648 GCCCTAAAAGAATTGGGGCC 59.169 55.000 20.34 0.00 45.30 5.80
4997 5541 1.622449 GCCCTAAAAGAATTGGGGCCT 60.622 52.381 20.34 0.00 45.30 5.19
4998 5542 2.110578 CCCTAAAAGAATTGGGGCCTG 58.889 52.381 0.84 0.00 36.15 4.85
4999 5543 1.482182 CCTAAAAGAATTGGGGCCTGC 59.518 52.381 0.84 0.00 0.00 4.85
5000 5544 2.460669 CTAAAAGAATTGGGGCCTGCT 58.539 47.619 0.84 0.00 0.00 4.24
5001 5545 2.621556 AAAAGAATTGGGGCCTGCTA 57.378 45.000 0.84 0.00 0.00 3.49
5002 5546 2.854736 AAAGAATTGGGGCCTGCTAT 57.145 45.000 0.84 0.00 0.00 2.97
5003 5547 2.077687 AAGAATTGGGGCCTGCTATG 57.922 50.000 0.84 0.00 0.00 2.23
5004 5548 0.468771 AGAATTGGGGCCTGCTATGC 60.469 55.000 0.84 0.00 0.00 3.14
5005 5549 1.799258 GAATTGGGGCCTGCTATGCG 61.799 60.000 0.84 0.00 0.00 4.73
5006 5550 2.572333 AATTGGGGCCTGCTATGCGT 62.572 55.000 0.84 0.00 0.00 5.24
5007 5551 2.965716 ATTGGGGCCTGCTATGCGTC 62.966 60.000 0.84 0.00 0.00 5.19
5011 5555 4.899239 GCCTGCTATGCGTCGGCT 62.899 66.667 0.00 0.00 40.82 5.52
5012 5556 2.963854 CCTGCTATGCGTCGGCTG 60.964 66.667 0.00 0.00 40.82 4.85
5013 5557 2.963854 CTGCTATGCGTCGGCTGG 60.964 66.667 0.00 0.00 40.82 4.85
5016 5560 2.963854 CTATGCGTCGGCTGGCAG 60.964 66.667 10.94 10.94 43.27 4.85
5017 5561 3.430565 CTATGCGTCGGCTGGCAGA 62.431 63.158 20.86 0.00 43.27 4.26
5018 5562 2.705934 CTATGCGTCGGCTGGCAGAT 62.706 60.000 20.86 3.05 43.27 2.90
5019 5563 2.699576 TATGCGTCGGCTGGCAGATC 62.700 60.000 20.86 8.48 43.27 2.75
5020 5564 4.521062 GCGTCGGCTGGCAGATCT 62.521 66.667 20.86 0.00 35.83 2.75
5021 5565 2.185350 CGTCGGCTGGCAGATCTT 59.815 61.111 20.86 0.00 0.00 2.40
5022 5566 1.448540 CGTCGGCTGGCAGATCTTT 60.449 57.895 20.86 0.00 0.00 2.52
5023 5567 1.021390 CGTCGGCTGGCAGATCTTTT 61.021 55.000 20.86 0.00 0.00 2.27
5024 5568 1.168714 GTCGGCTGGCAGATCTTTTT 58.831 50.000 20.86 0.00 0.00 1.94
5025 5569 2.356135 GTCGGCTGGCAGATCTTTTTA 58.644 47.619 20.86 0.00 0.00 1.52
5026 5570 2.747446 GTCGGCTGGCAGATCTTTTTAA 59.253 45.455 20.86 0.00 0.00 1.52
5027 5571 3.190535 GTCGGCTGGCAGATCTTTTTAAA 59.809 43.478 20.86 0.00 0.00 1.52
5028 5572 3.823873 TCGGCTGGCAGATCTTTTTAAAA 59.176 39.130 20.86 0.00 0.00 1.52
5029 5573 4.082787 TCGGCTGGCAGATCTTTTTAAAAG 60.083 41.667 20.86 10.89 0.00 2.27
5030 5574 4.082787 CGGCTGGCAGATCTTTTTAAAAGA 60.083 41.667 20.86 20.42 0.00 2.52
5031 5575 5.393461 CGGCTGGCAGATCTTTTTAAAAGAT 60.393 40.000 26.87 26.87 39.53 2.40
5061 5605 8.650143 ATCTTTTTAAAAGATCCACTGGCTTA 57.350 30.769 22.74 0.00 31.78 3.09
5063 5607 7.942341 TCTTTTTAAAAGATCCACTGGCTTAGA 59.058 33.333 15.24 0.00 0.00 2.10
5064 5608 7.448748 TTTTAAAAGATCCACTGGCTTAGAC 57.551 36.000 0.00 0.00 0.00 2.59
5065 5609 4.640771 AAAAGATCCACTGGCTTAGACA 57.359 40.909 0.00 0.00 0.00 3.41
5114 5658 0.816825 CAGCCCCGTCCTCATCATTG 60.817 60.000 0.00 0.00 0.00 2.82
5115 5659 2.189499 GCCCCGTCCTCATCATTGC 61.189 63.158 0.00 0.00 0.00 3.56
5116 5660 1.224315 CCCCGTCCTCATCATTGCA 59.776 57.895 0.00 0.00 0.00 4.08
5118 5662 0.734889 CCCGTCCTCATCATTGCAAC 59.265 55.000 0.00 0.00 0.00 4.17
5119 5663 1.452110 CCGTCCTCATCATTGCAACA 58.548 50.000 0.00 0.00 0.00 3.33
5124 5668 4.925054 CGTCCTCATCATTGCAACAAAAAT 59.075 37.500 0.00 0.00 0.00 1.82
5125 5669 6.092092 CGTCCTCATCATTGCAACAAAAATA 58.908 36.000 0.00 0.00 0.00 1.40
5126 5670 6.252015 CGTCCTCATCATTGCAACAAAAATAG 59.748 38.462 0.00 0.00 0.00 1.73
5127 5671 7.092716 GTCCTCATCATTGCAACAAAAATAGT 58.907 34.615 0.00 0.00 0.00 2.12
5128 5672 7.062605 GTCCTCATCATTGCAACAAAAATAGTG 59.937 37.037 0.00 0.00 0.00 2.74
5129 5673 6.869913 CCTCATCATTGCAACAAAAATAGTGT 59.130 34.615 0.00 0.00 0.00 3.55
5139 5683 6.756176 CAACAAAAATAGTGTTGCGAAAACA 58.244 32.000 4.52 0.43 46.63 2.83
5140 5684 7.397970 CAACAAAAATAGTGTTGCGAAAACAT 58.602 30.769 7.28 1.28 46.63 2.71
5141 5685 7.532682 ACAAAAATAGTGTTGCGAAAACATT 57.467 28.000 7.28 6.13 32.23 2.71
5143 5687 7.902403 ACAAAAATAGTGTTGCGAAAACATTTG 59.098 29.630 17.10 17.10 34.18 2.32
5144 5688 5.574815 AATAGTGTTGCGAAAACATTTGC 57.425 34.783 7.28 0.00 32.23 3.68
5145 5689 2.886081 AGTGTTGCGAAAACATTTGCA 58.114 38.095 7.28 0.00 39.42 4.08
5146 5690 3.257393 AGTGTTGCGAAAACATTTGCAA 58.743 36.364 11.20 11.20 46.00 4.08
5149 5693 3.921969 TTGCGAAAACATTTGCAACAG 57.078 38.095 11.20 0.00 44.04 3.16
5150 5694 2.886081 TGCGAAAACATTTGCAACAGT 58.114 38.095 0.00 0.00 38.32 3.55
5151 5695 2.602211 TGCGAAAACATTTGCAACAGTG 59.398 40.909 0.00 1.00 38.32 3.66
5152 5696 2.602660 GCGAAAACATTTGCAACAGTGT 59.397 40.909 0.00 1.71 0.00 3.55
5153 5697 3.061965 GCGAAAACATTTGCAACAGTGTT 59.938 39.130 14.80 14.80 36.43 3.32
5154 5698 4.435386 GCGAAAACATTTGCAACAGTGTTT 60.435 37.500 21.71 21.71 44.14 2.83
5234 5796 2.808244 CAACAAAGATTGTGTTGCGGT 58.192 42.857 4.52 0.00 46.63 5.68
5416 5988 6.500372 AACACCGGTTATGTTGCAAACCTAT 61.500 40.000 2.97 4.68 42.51 2.57
5425 5997 1.062525 GCAAACCTATTGAGCGGCG 59.937 57.895 0.51 0.51 0.00 6.46
5438 6010 2.967076 CGGCGCGCCTGATGTATT 60.967 61.111 43.60 0.00 0.00 1.89
5508 6080 4.776322 TGCTCCATCCCCAACGCG 62.776 66.667 3.53 3.53 0.00 6.01
5564 6139 2.122989 TGCCCCTCGTATCCCCTC 60.123 66.667 0.00 0.00 0.00 4.30
5565 6140 2.201771 GCCCCTCGTATCCCCTCT 59.798 66.667 0.00 0.00 0.00 3.69
5621 6197 2.795329 GAAGAGCTTGACAATTGGGGA 58.205 47.619 10.83 0.00 0.00 4.81
5665 6244 5.390387 AGGTAGGAGACATAATGGAGAGAC 58.610 45.833 0.00 0.00 0.00 3.36
5692 6274 4.135153 GGCGAGCGGCTCTCAAGA 62.135 66.667 25.96 0.00 41.98 3.02
5698 6280 2.659016 CGGCTCTCAAGAGGTGCA 59.341 61.111 9.01 0.00 42.29 4.57
5726 6308 4.988598 CAGGACGCGTGGCACCTT 62.989 66.667 20.70 0.00 34.06 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.200020 CGTTGGAATGAAAGTGGCTCC 59.800 52.381 0.00 0.00 0.00 4.70
107 108 4.483950 TGTCTTTTGAAGAGAGAGGAGGA 58.516 43.478 0.00 0.00 38.41 3.71
131 132 2.493973 CTCGCAGCTGAGGGTCTC 59.506 66.667 20.43 0.00 32.18 3.36
151 152 2.666317 CCATCCCCCACTATTTGTTCC 58.334 52.381 0.00 0.00 0.00 3.62
212 214 5.896922 TTTTGTTTAATGGTGTTGCATCG 57.103 34.783 0.00 0.00 0.00 3.84
246 248 2.693267 AAGAAGGGAGTAACGATGGC 57.307 50.000 0.00 0.00 0.00 4.40
254 256 7.649533 TGTACGATTGATTAAGAAGGGAGTA 57.350 36.000 0.00 0.00 0.00 2.59
264 266 5.106634 CCACGGGTTTTGTACGATTGATTAA 60.107 40.000 0.00 0.00 0.00 1.40
269 271 1.400500 GCCACGGGTTTTGTACGATTG 60.400 52.381 0.00 0.00 0.00 2.67
271 273 0.956902 GGCCACGGGTTTTGTACGAT 60.957 55.000 0.00 0.00 0.00 3.73
324 326 1.605753 TATGATCGAGTCGGGTGGAG 58.394 55.000 13.54 0.00 0.00 3.86
330 332 3.642705 TGAAAGCATATGATCGAGTCGG 58.357 45.455 13.54 0.00 0.00 4.79
366 370 7.069950 GGGTAAATCTAATTCTCATTTTGCCCT 59.930 37.037 10.82 0.00 34.24 5.19
368 372 8.011844 AGGGTAAATCTAATTCTCATTTTGCC 57.988 34.615 0.00 0.00 0.00 4.52
422 434 1.902508 CCTCTTTGCACTAGTCAGGGA 59.097 52.381 0.00 0.00 0.00 4.20
437 449 2.759795 GACCTTGCCAGGCCTCTT 59.240 61.111 9.64 0.00 45.56 2.85
441 453 2.825836 CATCGACCTTGCCAGGCC 60.826 66.667 9.64 0.00 45.56 5.19
460 472 8.997323 CAATCCATCCTGAAATTAGATACTGAC 58.003 37.037 0.00 0.00 0.00 3.51
470 482 6.378745 TCATCCATCAATCCATCCTGAAATT 58.621 36.000 0.00 0.00 0.00 1.82
473 485 5.382616 CTTCATCCATCAATCCATCCTGAA 58.617 41.667 0.00 0.00 0.00 3.02
475 487 4.079970 CCTTCATCCATCAATCCATCCTG 58.920 47.826 0.00 0.00 0.00 3.86
478 490 4.202545 ACCTCCTTCATCCATCAATCCATC 60.203 45.833 0.00 0.00 0.00 3.51
485 497 1.482182 CGTCACCTCCTTCATCCATCA 59.518 52.381 0.00 0.00 0.00 3.07
486 498 1.757118 TCGTCACCTCCTTCATCCATC 59.243 52.381 0.00 0.00 0.00 3.51
488 500 0.895530 GTCGTCACCTCCTTCATCCA 59.104 55.000 0.00 0.00 0.00 3.41
506 518 1.071699 ACATGCGTACACTTCAAGGGT 59.928 47.619 0.00 0.00 35.11 4.34
546 558 4.687464 GGTTACACACCAGTCCGG 57.313 61.111 0.00 0.00 46.42 5.14
588 600 1.074405 ACATCTAATGCCGGATGCCAT 59.926 47.619 5.05 0.00 41.93 4.40
589 601 0.473755 ACATCTAATGCCGGATGCCA 59.526 50.000 5.05 0.00 41.93 4.92
598 610 5.514279 GCATCAACACCTAACATCTAATGC 58.486 41.667 0.00 0.00 0.00 3.56
618 630 5.181245 GCCTAATACCAAACATACATCGCAT 59.819 40.000 0.00 0.00 0.00 4.73
648 660 1.134220 GTGATGAAGGGGTGCCGAATA 60.134 52.381 0.00 0.00 0.00 1.75
688 700 1.250840 GCCACCATCTTGGGAACACC 61.251 60.000 0.00 0.00 43.37 4.16
694 706 1.318158 GCTGAAGCCACCATCTTGGG 61.318 60.000 0.00 0.00 37.11 4.12
712 724 9.136952 CCTTACAACGTAATATATCAGTAAGGC 57.863 37.037 13.18 0.00 45.70 4.35
723 735 4.807304 CACGAAGCCCTTACAACGTAATAT 59.193 41.667 0.00 0.00 32.89 1.28
730 742 5.813080 ATTATTCACGAAGCCCTTACAAC 57.187 39.130 0.00 0.00 0.00 3.32
762 774 0.541392 TCTGGCCGATACATGCAACT 59.459 50.000 0.00 0.00 0.00 3.16
764 776 1.596603 CATCTGGCCGATACATGCAA 58.403 50.000 9.31 0.00 0.00 4.08
789 801 1.632965 AAAGGAGGATGTACCCCGGC 61.633 60.000 0.00 0.00 40.05 6.13
824 838 2.476185 CGAAAAAGATGCTCGCCGAAAT 60.476 45.455 0.00 0.00 0.00 2.17
844 883 9.398170 CCAAGCCTATTTCATTAATTATTCACG 57.602 33.333 0.00 0.00 0.00 4.35
845 884 9.196552 GCCAAGCCTATTTCATTAATTATTCAC 57.803 33.333 0.00 0.00 0.00 3.18
846 885 8.081633 CGCCAAGCCTATTTCATTAATTATTCA 58.918 33.333 0.00 0.00 0.00 2.57
847 886 8.296713 TCGCCAAGCCTATTTCATTAATTATTC 58.703 33.333 0.00 0.00 0.00 1.75
848 887 8.177119 TCGCCAAGCCTATTTCATTAATTATT 57.823 30.769 0.00 0.00 0.00 1.40
849 888 7.448469 ACTCGCCAAGCCTATTTCATTAATTAT 59.552 33.333 0.00 0.00 0.00 1.28
850 889 6.770785 ACTCGCCAAGCCTATTTCATTAATTA 59.229 34.615 0.00 0.00 0.00 1.40
851 890 5.594317 ACTCGCCAAGCCTATTTCATTAATT 59.406 36.000 0.00 0.00 0.00 1.40
852 891 5.133221 ACTCGCCAAGCCTATTTCATTAAT 58.867 37.500 0.00 0.00 0.00 1.40
853 892 4.523083 ACTCGCCAAGCCTATTTCATTAA 58.477 39.130 0.00 0.00 0.00 1.40
854 893 4.150897 ACTCGCCAAGCCTATTTCATTA 57.849 40.909 0.00 0.00 0.00 1.90
855 894 3.004752 ACTCGCCAAGCCTATTTCATT 57.995 42.857 0.00 0.00 0.00 2.57
856 895 2.717639 ACTCGCCAAGCCTATTTCAT 57.282 45.000 0.00 0.00 0.00 2.57
857 896 2.489938 AACTCGCCAAGCCTATTTCA 57.510 45.000 0.00 0.00 0.00 2.69
858 897 3.687698 TGTAAACTCGCCAAGCCTATTTC 59.312 43.478 0.00 0.00 0.00 2.17
862 901 2.027561 ACATGTAAACTCGCCAAGCCTA 60.028 45.455 0.00 0.00 0.00 3.93
887 926 0.517132 CGAGATCTGCGCAAAACACG 60.517 55.000 13.05 11.38 0.00 4.49
974 1013 0.115152 TCTCTCCAGTTGCTCCAGGA 59.885 55.000 0.00 0.00 0.00 3.86
1427 1466 6.708054 AGATAAATCTGTAGCGAAAGGATTGG 59.292 38.462 0.00 0.00 35.42 3.16
1491 1530 5.007682 GGGGTCACTTGCTTTATGTTCTAA 58.992 41.667 0.00 0.00 0.00 2.10
1603 1643 8.962884 ATTTGATCTTTAACAAAGTTGGCTTT 57.037 26.923 0.00 0.00 45.04 3.51
1832 1875 7.012327 CAGGATAATGTTGTACTTGGTACATGG 59.988 40.741 10.67 0.00 46.36 3.66
1908 1952 4.038402 CCTGCCAAAGCCTATAATCCAAAG 59.962 45.833 0.00 0.00 38.69 2.77
2055 2099 9.941991 CGCAAATATTCAAATAACAAGAAACAG 57.058 29.630 0.00 0.00 0.00 3.16
2081 2125 0.324943 TTGCTGGCTCCCTGTTACTC 59.675 55.000 0.00 0.00 0.00 2.59
2097 2141 5.559035 GCACCTATTCTGTCGAATGTATTGC 60.559 44.000 0.00 0.00 40.04 3.56
2194 2239 9.893634 TCTTCGGAACCAAACATTCTTTATATA 57.106 29.630 0.00 0.00 0.00 0.86
2317 2362 7.015292 GTCTTTTCTCTTAGATTTTGGGGGTTT 59.985 37.037 0.00 0.00 0.00 3.27
2349 2394 3.888323 TGAACATACTGTGGTGTTGCAAT 59.112 39.130 15.13 0.00 38.57 3.56
2363 2408 6.312672 AGGCTTTGTTGTTTTTGTGAACATAC 59.687 34.615 0.00 0.00 39.12 2.39
2366 2411 4.636249 AGGCTTTGTTGTTTTTGTGAACA 58.364 34.783 0.00 0.00 37.73 3.18
2375 2420 3.118775 GGGACTGAAAGGCTTTGTTGTTT 60.119 43.478 18.79 0.00 46.21 2.83
2439 2484 6.052840 CCATGACTTGGTTTCGATATCTTG 57.947 41.667 0.34 0.00 40.99 3.02
2501 2548 9.883142 GGAATATCACCAAAAATTTAACCATGA 57.117 29.630 0.00 0.00 0.00 3.07
2548 2595 3.083997 GGCATGGGAGGAGTCCGT 61.084 66.667 2.76 0.00 45.05 4.69
2567 2614 4.591321 AGGCTTCCATATTGAGGAAACA 57.409 40.909 0.00 0.00 44.07 2.83
2689 2736 7.116090 CAGAAGATCATGAATCGGTTAAGCTAG 59.884 40.741 0.00 0.00 39.55 3.42
2690 2737 6.925718 CAGAAGATCATGAATCGGTTAAGCTA 59.074 38.462 0.00 0.00 39.55 3.32
2691 2738 5.757320 CAGAAGATCATGAATCGGTTAAGCT 59.243 40.000 0.00 0.00 39.55 3.74
2694 2741 9.261180 GAATACAGAAGATCATGAATCGGTTAA 57.739 33.333 14.15 2.82 39.55 2.01
2696 2743 7.504403 AGAATACAGAAGATCATGAATCGGTT 58.496 34.615 14.15 0.00 39.55 4.44
2697 2744 7.015098 AGAGAATACAGAAGATCATGAATCGGT 59.985 37.037 0.00 8.33 39.55 4.69
2698 2745 7.377398 AGAGAATACAGAAGATCATGAATCGG 58.623 38.462 0.00 2.43 39.55 4.18
2699 2746 8.815141 AAGAGAATACAGAAGATCATGAATCG 57.185 34.615 0.00 0.00 39.55 3.34
2730 3101 3.309682 GCACATTAACAGCGCATCTCTTA 59.690 43.478 11.47 0.00 0.00 2.10
2740 3111 2.988493 CCAACATGTGCACATTAACAGC 59.012 45.455 29.48 0.00 33.61 4.40
2744 3115 2.627221 ACAGCCAACATGTGCACATTAA 59.373 40.909 29.48 2.80 33.61 1.40
2765 3136 6.165700 AGGTTTTCAACGTAGAAGTAGGAA 57.834 37.500 0.00 0.00 0.00 3.36
2790 3161 2.165030 CTGGGTCATGCCATGAAACTTC 59.835 50.000 9.36 0.00 41.69 3.01
2796 3167 0.966875 GTTGCTGGGTCATGCCATGA 60.967 55.000 2.53 2.53 39.65 3.07
2838 3209 4.131649 ACGGCAGTTGCACAATATACTA 57.868 40.909 6.43 0.00 44.36 1.82
2857 3228 5.062934 TGCACTTTTATCCGTTCATTCTACG 59.937 40.000 0.00 0.00 38.67 3.51
2860 3231 5.957842 TTGCACTTTTATCCGTTCATTCT 57.042 34.783 0.00 0.00 0.00 2.40
2877 3248 5.698545 AGAGTGAGAGTGAGTAAAATTGCAC 59.301 40.000 0.00 0.00 0.00 4.57
2904 3275 5.947228 TGGTATGTTCTCTCTTTGCAAAG 57.053 39.130 29.53 29.53 37.36 2.77
2906 3277 6.939730 TGTAATGGTATGTTCTCTCTTTGCAA 59.060 34.615 0.00 0.00 0.00 4.08
2927 3298 1.483415 GGATCCGGCTAGTGGTTGTAA 59.517 52.381 0.00 0.00 0.00 2.41
2931 3302 1.286248 AAAGGATCCGGCTAGTGGTT 58.714 50.000 5.98 0.00 0.00 3.67
3009 3380 7.057894 TGTCTAACAAAGTACACCCTGATTTT 58.942 34.615 0.00 0.00 0.00 1.82
3012 3383 5.818678 TGTCTAACAAAGTACACCCTGAT 57.181 39.130 0.00 0.00 0.00 2.90
3112 3483 0.029681 ATCCTACCCTGCATGGAGGT 60.030 55.000 29.15 19.78 38.35 3.85
3171 3542 3.696051 TGGCACATTCTTTGGCTAGATTC 59.304 43.478 0.00 0.00 40.16 2.52
3182 3553 3.896888 TGGAAATGAAGTGGCACATTCTT 59.103 39.130 21.41 14.47 44.52 2.52
3257 3629 2.838202 GTGGGGATCACTTAAGAGACCA 59.162 50.000 10.09 7.97 42.86 4.02
3379 3850 4.392921 AGGATGTCAAGTCCATCTTACG 57.607 45.455 0.00 0.00 38.95 3.18
3536 4007 7.230108 AGGTCAATCATGCAGTTGGAAATATAG 59.770 37.037 8.76 0.00 0.00 1.31
3562 4036 7.173218 GCTGCCATGCTATATAAAAGAGTGTTA 59.827 37.037 0.00 0.00 0.00 2.41
3619 4094 0.676782 GGGTTCCCATTCCACTCACG 60.677 60.000 2.59 0.00 0.00 4.35
3720 4195 2.798976 TTCACTTGCAGGAAACATGC 57.201 45.000 1.40 1.46 44.11 4.06
3735 4210 4.813296 AGTCGAACCAAATGACTTTCAC 57.187 40.909 0.00 0.00 39.87 3.18
3748 4223 6.697892 CCTAGAGACATAATTCAAGTCGAACC 59.302 42.308 0.00 0.00 36.12 3.62
3834 4309 3.328343 TCACTTATTTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 0.00 4.20
3843 4318 7.639113 ACAAACTTGAGTCACTTATTTTGGA 57.361 32.000 9.57 0.00 0.00 3.53
3851 4326 8.788325 AAAGTTAGTACAAACTTGAGTCACTT 57.212 30.769 2.97 0.00 46.40 3.16
3852 4327 9.530633 CTAAAGTTAGTACAAACTTGAGTCACT 57.469 33.333 2.97 0.00 46.40 3.41
3880 4355 9.174166 AGTGACTCAAGTTTGTATTAACTTTGT 57.826 29.630 0.00 0.00 43.85 2.83
3888 4363 9.965824 CCAAAATAAGTGACTCAAGTTTGTATT 57.034 29.630 15.07 0.08 0.00 1.89
3890 4365 7.776030 TCCCAAAATAAGTGACTCAAGTTTGTA 59.224 33.333 15.07 5.29 0.00 2.41
3891 4366 6.605594 TCCCAAAATAAGTGACTCAAGTTTGT 59.394 34.615 15.07 0.00 0.00 2.83
3892 4367 6.918022 GTCCCAAAATAAGTGACTCAAGTTTG 59.082 38.462 11.50 11.50 0.00 2.93
3897 4372 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3901 4376 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3903 4378 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3904 4379 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3905 4380 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3907 4382 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3908 4383 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3991 4504 6.767524 ATCGAGATAGATTGACCATAGGAC 57.232 41.667 0.00 0.00 0.00 3.85
4364 4890 5.643379 TGTCTGCAATAATTCCAAACCTC 57.357 39.130 0.00 0.00 0.00 3.85
4790 5324 5.758784 GGTATTAACATGTTCTAGCCAGACC 59.241 44.000 15.85 8.62 0.00 3.85
4862 5398 4.466726 AGCGTACAGGAATCCTTTACTTCT 59.533 41.667 19.77 14.41 35.37 2.85
4863 5399 4.756502 AGCGTACAGGAATCCTTTACTTC 58.243 43.478 19.77 12.82 35.37 3.01
4868 5412 3.695830 TGAAGCGTACAGGAATCCTTT 57.304 42.857 0.00 0.00 0.00 3.11
4876 5420 0.320374 TCCAGGTTGAAGCGTACAGG 59.680 55.000 0.00 0.00 0.00 4.00
4882 5426 1.470098 CCATTTCTCCAGGTTGAAGCG 59.530 52.381 0.00 0.00 0.00 4.68
4891 5435 5.964958 TCTTGTAAAAGCCATTTCTCCAG 57.035 39.130 0.00 0.00 32.27 3.86
4906 5450 8.453238 TTGCACCTTAAGTTACATTCTTGTAA 57.547 30.769 0.97 0.00 44.16 2.41
4907 5451 8.630054 ATTGCACCTTAAGTTACATTCTTGTA 57.370 30.769 0.97 0.00 37.28 2.41
4908 5452 6.952773 TTGCACCTTAAGTTACATTCTTGT 57.047 33.333 0.97 0.00 39.98 3.16
4909 5453 8.511321 TGTATTGCACCTTAAGTTACATTCTTG 58.489 33.333 0.97 0.00 0.00 3.02
4910 5454 8.630054 TGTATTGCACCTTAAGTTACATTCTT 57.370 30.769 0.97 0.00 0.00 2.52
4911 5455 8.630054 TTGTATTGCACCTTAAGTTACATTCT 57.370 30.769 0.97 0.00 0.00 2.40
4914 5458 8.899771 GGTATTGTATTGCACCTTAAGTTACAT 58.100 33.333 0.97 0.00 0.00 2.29
4915 5459 7.883833 TGGTATTGTATTGCACCTTAAGTTACA 59.116 33.333 0.97 0.00 32.04 2.41
4916 5460 8.271312 TGGTATTGTATTGCACCTTAAGTTAC 57.729 34.615 0.97 0.00 32.04 2.50
4917 5461 8.865420 TTGGTATTGTATTGCACCTTAAGTTA 57.135 30.769 0.97 0.00 32.04 2.24
4918 5462 7.768807 TTGGTATTGTATTGCACCTTAAGTT 57.231 32.000 0.97 0.00 32.04 2.66
4919 5463 7.768807 TTTGGTATTGTATTGCACCTTAAGT 57.231 32.000 0.97 0.00 32.04 2.24
4922 5466 9.469097 ACTATTTTGGTATTGTATTGCACCTTA 57.531 29.630 0.00 0.00 32.04 2.69
4923 5467 8.361169 ACTATTTTGGTATTGTATTGCACCTT 57.639 30.769 0.00 0.00 32.04 3.50
4924 5468 7.954666 ACTATTTTGGTATTGTATTGCACCT 57.045 32.000 0.00 0.00 32.04 4.00
4925 5469 8.247562 TCAACTATTTTGGTATTGTATTGCACC 58.752 33.333 0.00 0.00 0.00 5.01
4926 5470 9.289303 CTCAACTATTTTGGTATTGTATTGCAC 57.711 33.333 0.00 0.00 0.00 4.57
4927 5471 9.237187 TCTCAACTATTTTGGTATTGTATTGCA 57.763 29.630 0.00 0.00 0.00 4.08
4933 5477 9.308000 TGGATTTCTCAACTATTTTGGTATTGT 57.692 29.630 0.00 0.00 0.00 2.71
4934 5478 9.793252 CTGGATTTCTCAACTATTTTGGTATTG 57.207 33.333 0.00 0.00 0.00 1.90
4935 5479 8.971073 CCTGGATTTCTCAACTATTTTGGTATT 58.029 33.333 0.00 0.00 0.00 1.89
4936 5480 8.336235 TCCTGGATTTCTCAACTATTTTGGTAT 58.664 33.333 0.00 0.00 0.00 2.73
4937 5481 7.695055 TCCTGGATTTCTCAACTATTTTGGTA 58.305 34.615 0.00 0.00 0.00 3.25
4938 5482 6.552008 TCCTGGATTTCTCAACTATTTTGGT 58.448 36.000 0.00 0.00 0.00 3.67
4939 5483 7.466746 TTCCTGGATTTCTCAACTATTTTGG 57.533 36.000 0.00 0.00 0.00 3.28
4940 5484 9.933723 AATTTCCTGGATTTCTCAACTATTTTG 57.066 29.630 0.00 0.00 0.00 2.44
4944 5488 9.753674 TGTAAATTTCCTGGATTTCTCAACTAT 57.246 29.630 0.00 0.00 0.00 2.12
4945 5489 9.753674 ATGTAAATTTCCTGGATTTCTCAACTA 57.246 29.630 0.00 0.00 0.00 2.24
4946 5490 8.655935 ATGTAAATTTCCTGGATTTCTCAACT 57.344 30.769 0.00 0.00 0.00 3.16
4952 5496 9.034544 GCACATTATGTAAATTTCCTGGATTTC 57.965 33.333 0.00 0.00 0.00 2.17
4953 5497 7.986889 GGCACATTATGTAAATTTCCTGGATTT 59.013 33.333 0.00 0.00 0.00 2.17
4954 5498 7.418942 GGGCACATTATGTAAATTTCCTGGATT 60.419 37.037 0.00 0.00 0.00 3.01
4955 5499 6.041979 GGGCACATTATGTAAATTTCCTGGAT 59.958 38.462 0.00 0.00 0.00 3.41
4956 5500 5.362430 GGGCACATTATGTAAATTTCCTGGA 59.638 40.000 0.00 0.00 0.00 3.86
4957 5501 5.363580 AGGGCACATTATGTAAATTTCCTGG 59.636 40.000 0.00 0.00 0.00 4.45
4958 5502 6.469782 AGGGCACATTATGTAAATTTCCTG 57.530 37.500 0.00 0.00 0.00 3.86
4959 5503 8.602472 TTTAGGGCACATTATGTAAATTTCCT 57.398 30.769 0.00 2.28 0.00 3.36
4960 5504 9.313118 CTTTTAGGGCACATTATGTAAATTTCC 57.687 33.333 0.00 0.00 0.00 3.13
4965 5509 9.868277 CAATTCTTTTAGGGCACATTATGTAAA 57.132 29.630 0.00 0.00 0.00 2.01
4966 5510 8.474025 CCAATTCTTTTAGGGCACATTATGTAA 58.526 33.333 0.00 0.00 0.00 2.41
4967 5511 7.069331 CCCAATTCTTTTAGGGCACATTATGTA 59.931 37.037 0.00 0.00 33.91 2.29
4968 5512 6.127083 CCCAATTCTTTTAGGGCACATTATGT 60.127 38.462 0.00 0.00 33.91 2.29
4969 5513 6.282930 CCCAATTCTTTTAGGGCACATTATG 58.717 40.000 0.00 0.00 33.91 1.90
4970 5514 5.366477 CCCCAATTCTTTTAGGGCACATTAT 59.634 40.000 0.00 0.00 40.07 1.28
4971 5515 4.714308 CCCCAATTCTTTTAGGGCACATTA 59.286 41.667 0.00 0.00 40.07 1.90
4972 5516 3.519107 CCCCAATTCTTTTAGGGCACATT 59.481 43.478 0.00 0.00 40.07 2.71
4973 5517 3.106827 CCCCAATTCTTTTAGGGCACAT 58.893 45.455 0.00 0.00 40.07 3.21
4974 5518 2.534990 CCCCAATTCTTTTAGGGCACA 58.465 47.619 0.00 0.00 40.07 4.57
4978 5522 2.110578 CAGGCCCCAATTCTTTTAGGG 58.889 52.381 0.00 0.00 41.02 3.53
4979 5523 1.482182 GCAGGCCCCAATTCTTTTAGG 59.518 52.381 0.00 0.00 0.00 2.69
4980 5524 2.460669 AGCAGGCCCCAATTCTTTTAG 58.539 47.619 0.00 0.00 0.00 1.85
4981 5525 2.621556 AGCAGGCCCCAATTCTTTTA 57.378 45.000 0.00 0.00 0.00 1.52
4982 5526 2.621556 TAGCAGGCCCCAATTCTTTT 57.378 45.000 0.00 0.00 0.00 2.27
4983 5527 2.391678 CATAGCAGGCCCCAATTCTTT 58.608 47.619 0.00 0.00 0.00 2.52
4984 5528 2.031097 GCATAGCAGGCCCCAATTCTT 61.031 52.381 0.00 0.00 0.00 2.52
4985 5529 0.468771 GCATAGCAGGCCCCAATTCT 60.469 55.000 0.00 0.00 0.00 2.40
4986 5530 1.799258 CGCATAGCAGGCCCCAATTC 61.799 60.000 0.00 0.00 0.00 2.17
4987 5531 1.829533 CGCATAGCAGGCCCCAATT 60.830 57.895 0.00 0.00 0.00 2.32
4988 5532 2.203394 CGCATAGCAGGCCCCAAT 60.203 61.111 0.00 0.00 0.00 3.16
4989 5533 3.697439 GACGCATAGCAGGCCCCAA 62.697 63.158 0.00 0.00 0.00 4.12
4990 5534 4.175337 GACGCATAGCAGGCCCCA 62.175 66.667 0.00 0.00 0.00 4.96
4994 5538 4.899239 AGCCGACGCATAGCAGGC 62.899 66.667 10.72 10.72 41.24 4.85
4995 5539 2.963854 CAGCCGACGCATAGCAGG 60.964 66.667 0.00 0.00 37.52 4.85
4996 5540 2.963854 CCAGCCGACGCATAGCAG 60.964 66.667 0.00 0.00 37.52 4.24
4999 5543 2.705934 ATCTGCCAGCCGACGCATAG 62.706 60.000 0.00 0.00 37.52 2.23
5000 5544 2.699576 GATCTGCCAGCCGACGCATA 62.700 60.000 0.00 0.00 37.52 3.14
5001 5545 4.166888 ATCTGCCAGCCGACGCAT 62.167 61.111 0.00 0.00 37.52 4.73
5002 5546 4.819761 GATCTGCCAGCCGACGCA 62.820 66.667 0.00 0.00 37.52 5.24
5003 5547 4.521062 AGATCTGCCAGCCGACGC 62.521 66.667 0.00 0.00 0.00 5.19
5004 5548 1.021390 AAAAGATCTGCCAGCCGACG 61.021 55.000 0.00 0.00 0.00 5.12
5005 5549 1.168714 AAAAAGATCTGCCAGCCGAC 58.831 50.000 0.00 0.00 0.00 4.79
5006 5550 2.779755 TAAAAAGATCTGCCAGCCGA 57.220 45.000 0.00 0.00 0.00 5.54
5007 5551 3.848272 TTTAAAAAGATCTGCCAGCCG 57.152 42.857 0.00 0.00 0.00 5.52
5008 5552 5.391312 TCTTTTAAAAAGATCTGCCAGCC 57.609 39.130 0.00 0.00 0.00 4.85
5009 5553 7.167128 CGGATCTTTTAAAAAGATCTGCCAGC 61.167 42.308 24.09 14.19 46.78 4.85
5010 5554 6.261118 CGGATCTTTTAAAAAGATCTGCCAG 58.739 40.000 24.09 8.72 46.78 4.85
5011 5555 6.194796 CGGATCTTTTAAAAAGATCTGCCA 57.805 37.500 24.09 0.61 46.78 4.92
5053 5597 3.418995 TCTAACGACTGTCTAAGCCAGT 58.581 45.455 6.21 0.00 45.52 4.00
5055 5599 4.096532 CAGATCTAACGACTGTCTAAGCCA 59.903 45.833 6.21 0.00 0.00 4.75
5061 5605 1.402259 CGCCAGATCTAACGACTGTCT 59.598 52.381 10.25 0.00 0.00 3.41
5063 5607 0.179134 GCGCCAGATCTAACGACTGT 60.179 55.000 17.95 0.00 0.00 3.55
5064 5608 0.872021 GGCGCCAGATCTAACGACTG 60.872 60.000 24.80 0.00 0.00 3.51
5065 5609 1.320344 TGGCGCCAGATCTAACGACT 61.320 55.000 29.03 0.00 33.78 4.18
5116 5660 6.952935 TGTTTTCGCAACACTATTTTTGTT 57.047 29.167 0.00 0.00 37.69 2.83
5118 5662 7.097490 GCAAATGTTTTCGCAACACTATTTTTG 60.097 33.333 13.50 13.50 32.57 2.44
5119 5663 6.904543 GCAAATGTTTTCGCAACACTATTTTT 59.095 30.769 2.49 0.00 32.37 1.94
5124 5668 4.033990 TGCAAATGTTTTCGCAACACTA 57.966 36.364 2.49 0.00 32.37 2.74
5125 5669 2.886081 TGCAAATGTTTTCGCAACACT 58.114 38.095 2.49 0.00 32.37 3.55
5126 5670 3.648179 TTGCAAATGTTTTCGCAACAC 57.352 38.095 0.00 0.00 39.32 3.32
5129 5673 3.061831 CACTGTTGCAAATGTTTTCGCAA 59.938 39.130 0.00 0.00 41.79 4.85
5131 5675 2.602660 ACACTGTTGCAAATGTTTTCGC 59.397 40.909 0.00 0.00 0.00 4.70
5132 5676 4.838665 AACACTGTTGCAAATGTTTTCG 57.161 36.364 15.62 3.87 31.27 3.46
5135 5679 4.435386 GCGAAAACACTGTTGCAAATGTTT 60.435 37.500 22.54 22.54 44.90 2.83
5138 5682 2.602211 TGCGAAAACACTGTTGCAAATG 59.398 40.909 0.00 2.61 0.00 2.32
5139 5683 2.886081 TGCGAAAACACTGTTGCAAAT 58.114 38.095 0.00 0.00 0.00 2.32
5140 5684 2.354109 TGCGAAAACACTGTTGCAAA 57.646 40.000 0.00 0.00 0.00 3.68
5141 5685 1.989165 GTTGCGAAAACACTGTTGCAA 59.011 42.857 11.99 11.99 39.73 4.08
5143 5687 1.583404 CTGTTGCGAAAACACTGTTGC 59.417 47.619 0.00 0.00 0.00 4.17
5144 5688 3.100817 CTCTGTTGCGAAAACACTGTTG 58.899 45.455 0.00 0.00 0.00 3.33
5145 5689 3.006940 TCTCTGTTGCGAAAACACTGTT 58.993 40.909 0.43 0.00 0.00 3.16
5146 5690 2.627945 TCTCTGTTGCGAAAACACTGT 58.372 42.857 0.43 0.00 0.00 3.55
5147 5691 3.885484 ATCTCTGTTGCGAAAACACTG 57.115 42.857 0.43 0.00 0.00 3.66
5149 5693 2.721090 GCAATCTCTGTTGCGAAAACAC 59.279 45.455 0.43 0.00 44.20 3.32
5150 5694 2.998772 GCAATCTCTGTTGCGAAAACA 58.001 42.857 4.34 4.34 44.20 2.83
5278 5844 0.606401 CTGTGGCGGGATGTTTCTGT 60.606 55.000 0.00 0.00 0.00 3.41
5425 5997 1.953559 TCCTCAAATACATCAGGCGC 58.046 50.000 0.00 0.00 0.00 6.53
5438 6010 3.938963 GTGCTTCATCGGTAAATCCTCAA 59.061 43.478 0.00 0.00 0.00 3.02
5528 6101 2.688666 CTAGGTGCTCAGGGGGCA 60.689 66.667 0.00 0.00 37.36 5.36
5530 6103 2.041265 ACCTAGGTGCTCAGGGGG 59.959 66.667 15.42 0.00 36.15 5.40
5564 6139 1.953138 CCTCGATTGGCGCTGCTAG 60.953 63.158 7.64 0.00 40.61 3.42
5565 6140 1.388837 TACCTCGATTGGCGCTGCTA 61.389 55.000 7.64 0.00 40.61 3.49
5611 6186 3.200825 CACCTACATCTCTCCCCAATTGT 59.799 47.826 4.43 0.00 0.00 2.71
5621 6197 4.714308 CCTTTCTCCTTCACCTACATCTCT 59.286 45.833 0.00 0.00 0.00 3.10
5665 6244 3.121030 CGCTCGCCTCCAACCTTG 61.121 66.667 0.00 0.00 0.00 3.61
5726 6308 1.358725 CGAAAGAAATCCGCCTCGCA 61.359 55.000 0.00 0.00 0.00 5.10
5730 6312 2.762535 TTCTCGAAAGAAATCCGCCT 57.237 45.000 0.00 0.00 38.58 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.