Multiple sequence alignment - TraesCS2D01G289100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G289100 chr2D 100.000 6626 0 0 1 6626 371152556 371159181 0.000000e+00 12237.0
1 TraesCS2D01G289100 chr2D 93.499 846 19 16 5816 6626 560328355 560329199 0.000000e+00 1225.0
2 TraesCS2D01G289100 chr2D 100.000 29 0 0 5171 5199 201830047 201830019 3.000000e-03 54.7
3 TraesCS2D01G289100 chr2A 97.263 2813 59 4 3024 5819 501844846 501847657 0.000000e+00 4752.0
4 TraesCS2D01G289100 chr2A 94.983 2591 97 15 444 3027 501842241 501844805 0.000000e+00 4034.0
5 TraesCS2D01G289100 chr2A 93.261 831 33 9 5814 6626 65334163 65333338 0.000000e+00 1203.0
6 TraesCS2D01G289100 chr2A 94.444 72 4 0 313 384 697089480 697089409 1.950000e-20 111.0
7 TraesCS2D01G289100 chr2B 97.196 2817 56 10 3024 5819 440212141 440214955 0.000000e+00 4743.0
8 TraesCS2D01G289100 chr2B 96.959 2631 62 8 397 3027 440209449 440212061 0.000000e+00 4399.0
9 TraesCS2D01G289100 chr2B 90.441 136 11 1 1 136 440204748 440204615 1.900000e-40 178.0
10 TraesCS2D01G289100 chr1D 96.798 812 16 4 5816 6626 284050925 284050123 0.000000e+00 1347.0
11 TraesCS2D01G289100 chr4B 92.308 819 32 16 5816 6625 636768771 636769567 0.000000e+00 1134.0
12 TraesCS2D01G289100 chr4B 89.610 154 13 2 6474 6625 636769525 636769677 6.780000e-45 193.0
13 TraesCS2D01G289100 chr4B 94.444 36 2 0 5164 5199 625999024 625999059 1.000000e-03 56.5
14 TraesCS2D01G289100 chr3A 91.114 844 34 10 5816 6625 93445 94281 0.000000e+00 1105.0
15 TraesCS2D01G289100 chr3A 92.958 142 7 2 6487 6625 94250 94391 3.130000e-48 204.0
16 TraesCS2D01G289100 chr3A 89.231 65 6 1 308 371 594345544 594345480 5.510000e-11 80.5
17 TraesCS2D01G289100 chr3B 90.453 817 25 23 5816 6625 763011647 763010877 0.000000e+00 1027.0
18 TraesCS2D01G289100 chr3B 90.909 154 11 2 6474 6625 763010919 763010767 3.130000e-48 204.0
19 TraesCS2D01G289100 chr5A 86.248 589 53 18 5816 6383 436069669 436070250 1.220000e-171 614.0
20 TraesCS2D01G289100 chr5A 86.928 153 18 2 4424 4576 609244856 609245006 3.180000e-38 171.0
21 TraesCS2D01G289100 chr5D 79.123 479 82 15 3114 3587 420713700 420713235 1.390000e-81 315.0
22 TraesCS2D01G289100 chr5B 78.914 479 83 15 3114 3587 506791810 506791345 6.450000e-80 309.0
23 TraesCS2D01G289100 chr6A 88.372 215 24 1 1 214 4554592 4554806 2.370000e-64 257.0
24 TraesCS2D01G289100 chr6A 90.805 87 5 2 131 214 4555021 4555107 5.430000e-21 113.0
25 TraesCS2D01G289100 chr1B 85.484 186 24 2 20 204 685539279 685539096 2.440000e-44 191.0
26 TraesCS2D01G289100 chr1B 94.340 53 2 1 261 312 685539081 685539029 5.510000e-11 80.5
27 TraesCS2D01G289100 chr7D 83.243 185 17 8 31 214 579062561 579062732 2.470000e-34 158.0
28 TraesCS2D01G289100 chr7D 95.385 65 3 0 248 312 579062731 579062795 3.270000e-18 104.0
29 TraesCS2D01G289100 chr4D 95.833 72 3 0 313 384 95050991 95051062 4.200000e-22 117.0
30 TraesCS2D01G289100 chr7A 100.000 28 0 0 5171 5198 537659437 537659410 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G289100 chr2D 371152556 371159181 6625 False 12237.0 12237 100.0000 1 6626 1 chr2D.!!$F1 6625
1 TraesCS2D01G289100 chr2D 560328355 560329199 844 False 1225.0 1225 93.4990 5816 6626 1 chr2D.!!$F2 810
2 TraesCS2D01G289100 chr2A 501842241 501847657 5416 False 4393.0 4752 96.1230 444 5819 2 chr2A.!!$F1 5375
3 TraesCS2D01G289100 chr2A 65333338 65334163 825 True 1203.0 1203 93.2610 5814 6626 1 chr2A.!!$R1 812
4 TraesCS2D01G289100 chr2B 440209449 440214955 5506 False 4571.0 4743 97.0775 397 5819 2 chr2B.!!$F1 5422
5 TraesCS2D01G289100 chr1D 284050123 284050925 802 True 1347.0 1347 96.7980 5816 6626 1 chr1D.!!$R1 810
6 TraesCS2D01G289100 chr4B 636768771 636769677 906 False 663.5 1134 90.9590 5816 6625 2 chr4B.!!$F2 809
7 TraesCS2D01G289100 chr3A 93445 94391 946 False 654.5 1105 92.0360 5816 6625 2 chr3A.!!$F1 809
8 TraesCS2D01G289100 chr3B 763010767 763011647 880 True 615.5 1027 90.6810 5816 6625 2 chr3B.!!$R1 809
9 TraesCS2D01G289100 chr5A 436069669 436070250 581 False 614.0 614 86.2480 5816 6383 1 chr5A.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.107508 ACAGGGAATGAGGCGTCATG 60.108 55.000 21.75 13.14 43.04 3.07 F
33 34 0.178767 CAGGGAATGAGGCGTCATGA 59.821 55.000 21.75 0.00 43.04 3.07 F
34 35 0.179000 AGGGAATGAGGCGTCATGAC 59.821 55.000 21.75 16.21 43.04 3.06 F
35 36 0.179000 GGGAATGAGGCGTCATGACT 59.821 55.000 21.75 7.20 43.04 3.41 F
68 69 0.183971 AATGGTTGTTGGACGGGACA 59.816 50.000 0.00 0.00 0.00 4.02 F
70 71 0.183971 TGGTTGTTGGACGGGACAAT 59.816 50.000 0.00 0.00 37.98 2.71 F
182 183 0.255890 TAAGTGGCTTGCCATCCTCC 59.744 55.000 17.86 4.41 0.00 4.30 F
2417 2424 0.588252 CTTGTGGTGAGTTTCGGCAG 59.412 55.000 0.00 0.00 0.00 4.85 F
2591 2598 0.251165 TGGAAGCCAGGGTTACAAGC 60.251 55.000 14.42 0.00 30.44 4.01 F
4518 4610 2.763448 GACTCACAGGTGCTAGATCCTT 59.237 50.000 0.00 0.00 30.91 3.36 F
5108 5200 1.608590 CCGGTCCATTTGTATGCCATC 59.391 52.381 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 1802 6.590292 TCTTTCGAGAGTCCACATAAATTCAC 59.410 38.462 2.53 0.00 0.00 3.18 R
1865 1872 8.359060 AGCTAGAAAATATTTAGAAGTGCGAG 57.641 34.615 0.01 0.00 0.00 5.03 R
2109 2116 9.121517 CAGTGTCATAAAGAAAATTAGCACAAG 57.878 33.333 0.00 0.00 0.00 3.16 R
2196 2203 5.574830 GGCTCGCATAGTCAAATCTATACAG 59.425 44.000 0.00 0.00 0.00 2.74 R
2417 2424 4.260784 CGTGGCTGTTTATCTAGAATTGGC 60.261 45.833 0.00 0.00 0.00 4.52 R
2424 2431 3.521560 TCAAGCGTGGCTGTTTATCTAG 58.478 45.455 0.00 0.00 39.62 2.43 R
2449 2456 3.179048 ACTGTTTGCGAGCAACTTTTTC 58.821 40.909 10.30 0.00 35.46 2.29 R
3922 4014 0.676466 TGCCGGACCACAATGATGTC 60.676 55.000 5.05 0.00 37.82 3.06 R
4663 4755 1.200948 TGCACATCAGACTGAGTCTCG 59.799 52.381 13.05 8.75 41.37 4.04 R
5613 5725 0.385390 CAAGCCTTCAAAGCGTTGGT 59.615 50.000 12.54 0.00 35.29 3.67 R
5913 6025 2.205074 AGCAACGTGAGAAACTGACAG 58.795 47.619 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.857694 TTTAGTAAAACTAACAGGGAATGAGG 57.142 34.615 0.00 0.00 40.12 3.86
26 27 5.254115 AGTAAAACTAACAGGGAATGAGGC 58.746 41.667 0.00 0.00 0.00 4.70
27 28 2.403252 AACTAACAGGGAATGAGGCG 57.597 50.000 0.00 0.00 0.00 5.52
28 29 1.276622 ACTAACAGGGAATGAGGCGT 58.723 50.000 0.00 0.00 0.00 5.68
29 30 1.207329 ACTAACAGGGAATGAGGCGTC 59.793 52.381 0.00 0.00 0.00 5.19
30 31 1.207089 CTAACAGGGAATGAGGCGTCA 59.793 52.381 12.13 12.13 37.02 4.35
31 32 0.620556 AACAGGGAATGAGGCGTCAT 59.379 50.000 15.97 15.97 46.01 3.06
32 33 0.107508 ACAGGGAATGAGGCGTCATG 60.108 55.000 21.75 13.14 43.04 3.07
33 34 0.178767 CAGGGAATGAGGCGTCATGA 59.821 55.000 21.75 0.00 43.04 3.07
34 35 0.179000 AGGGAATGAGGCGTCATGAC 59.821 55.000 21.75 16.21 43.04 3.06
35 36 0.179000 GGGAATGAGGCGTCATGACT 59.821 55.000 21.75 7.20 43.04 3.41
36 37 1.293924 GGAATGAGGCGTCATGACTG 58.706 55.000 21.75 16.77 43.04 3.51
37 38 1.406069 GGAATGAGGCGTCATGACTGT 60.406 52.381 21.75 6.45 43.04 3.55
38 39 1.662629 GAATGAGGCGTCATGACTGTG 59.337 52.381 21.75 9.37 43.04 3.66
39 40 0.742281 ATGAGGCGTCATGACTGTGC 60.742 55.000 22.95 18.08 42.19 4.57
40 41 1.374631 GAGGCGTCATGACTGTGCA 60.375 57.895 22.95 0.00 34.35 4.57
41 42 1.357258 GAGGCGTCATGACTGTGCAG 61.357 60.000 22.95 7.94 34.35 4.41
42 43 1.374631 GGCGTCATGACTGTGCAGA 60.375 57.895 22.95 0.00 0.00 4.26
43 44 0.742281 GGCGTCATGACTGTGCAGAT 60.742 55.000 22.95 0.00 0.00 2.90
44 45 0.649475 GCGTCATGACTGTGCAGATC 59.351 55.000 22.95 1.28 0.00 2.75
45 46 1.738365 GCGTCATGACTGTGCAGATCT 60.738 52.381 22.95 0.00 0.00 2.75
46 47 2.480244 GCGTCATGACTGTGCAGATCTA 60.480 50.000 22.95 0.00 0.00 1.98
47 48 3.798206 GCGTCATGACTGTGCAGATCTAT 60.798 47.826 22.95 0.00 0.00 1.98
48 49 4.557496 GCGTCATGACTGTGCAGATCTATA 60.557 45.833 22.95 0.00 0.00 1.31
49 50 5.523369 CGTCATGACTGTGCAGATCTATAA 58.477 41.667 22.95 0.00 0.00 0.98
50 51 5.979517 CGTCATGACTGTGCAGATCTATAAA 59.020 40.000 22.95 0.00 0.00 1.40
51 52 6.644181 CGTCATGACTGTGCAGATCTATAAAT 59.356 38.462 22.95 0.00 0.00 1.40
52 53 7.359014 CGTCATGACTGTGCAGATCTATAAATG 60.359 40.741 22.95 0.00 0.00 2.32
53 54 6.932960 TCATGACTGTGCAGATCTATAAATGG 59.067 38.462 6.17 0.00 0.00 3.16
54 55 6.239217 TGACTGTGCAGATCTATAAATGGT 57.761 37.500 6.17 0.00 0.00 3.55
55 56 6.653020 TGACTGTGCAGATCTATAAATGGTT 58.347 36.000 6.17 0.00 0.00 3.67
56 57 6.539826 TGACTGTGCAGATCTATAAATGGTTG 59.460 38.462 6.17 0.00 0.00 3.77
57 58 6.418101 ACTGTGCAGATCTATAAATGGTTGT 58.582 36.000 6.17 0.00 0.00 3.32
58 59 6.886459 ACTGTGCAGATCTATAAATGGTTGTT 59.114 34.615 6.17 0.00 0.00 2.83
59 60 7.087409 TGTGCAGATCTATAAATGGTTGTTG 57.913 36.000 0.00 0.00 0.00 3.33
60 61 6.095300 TGTGCAGATCTATAAATGGTTGTTGG 59.905 38.462 0.00 0.00 0.00 3.77
61 62 6.318648 GTGCAGATCTATAAATGGTTGTTGGA 59.681 38.462 0.00 0.00 0.00 3.53
62 63 6.318648 TGCAGATCTATAAATGGTTGTTGGAC 59.681 38.462 0.00 0.00 0.00 4.02
63 64 6.511767 GCAGATCTATAAATGGTTGTTGGACG 60.512 42.308 0.00 0.00 0.00 4.79
64 65 6.017934 CAGATCTATAAATGGTTGTTGGACGG 60.018 42.308 0.00 0.00 0.00 4.79
65 66 4.519213 TCTATAAATGGTTGTTGGACGGG 58.481 43.478 0.00 0.00 0.00 5.28
66 67 2.953284 TAAATGGTTGTTGGACGGGA 57.047 45.000 0.00 0.00 0.00 5.14
67 68 1.324383 AAATGGTTGTTGGACGGGAC 58.676 50.000 0.00 0.00 0.00 4.46
68 69 0.183971 AATGGTTGTTGGACGGGACA 59.816 50.000 0.00 0.00 0.00 4.02
69 70 0.183971 ATGGTTGTTGGACGGGACAA 59.816 50.000 0.00 0.00 33.67 3.18
70 71 0.183971 TGGTTGTTGGACGGGACAAT 59.816 50.000 0.00 0.00 37.98 2.71
71 72 1.324383 GGTTGTTGGACGGGACAATT 58.676 50.000 0.00 0.00 37.98 2.32
72 73 1.000717 GGTTGTTGGACGGGACAATTG 60.001 52.381 3.24 3.24 37.98 2.32
73 74 1.679153 GTTGTTGGACGGGACAATTGT 59.321 47.619 11.78 11.78 37.98 2.71
74 75 2.879646 GTTGTTGGACGGGACAATTGTA 59.120 45.455 11.95 0.00 37.98 2.41
75 76 2.773487 TGTTGGACGGGACAATTGTAG 58.227 47.619 11.95 8.72 0.00 2.74
76 77 2.369203 TGTTGGACGGGACAATTGTAGA 59.631 45.455 11.95 0.00 0.00 2.59
77 78 3.000727 GTTGGACGGGACAATTGTAGAG 58.999 50.000 11.95 8.00 0.00 2.43
78 79 2.531771 TGGACGGGACAATTGTAGAGA 58.468 47.619 11.95 0.00 0.00 3.10
79 80 2.901192 TGGACGGGACAATTGTAGAGAA 59.099 45.455 11.95 0.00 0.00 2.87
80 81 3.325425 TGGACGGGACAATTGTAGAGAAA 59.675 43.478 11.95 0.00 0.00 2.52
81 82 3.933332 GGACGGGACAATTGTAGAGAAAG 59.067 47.826 11.95 2.00 0.00 2.62
82 83 4.322499 GGACGGGACAATTGTAGAGAAAGA 60.322 45.833 11.95 0.00 0.00 2.52
83 84 5.420409 GACGGGACAATTGTAGAGAAAGAT 58.580 41.667 11.95 0.00 0.00 2.40
84 85 5.178797 ACGGGACAATTGTAGAGAAAGATG 58.821 41.667 11.95 0.00 0.00 2.90
85 86 5.046591 ACGGGACAATTGTAGAGAAAGATGA 60.047 40.000 11.95 0.00 0.00 2.92
86 87 5.521735 CGGGACAATTGTAGAGAAAGATGAG 59.478 44.000 11.95 0.00 0.00 2.90
87 88 6.628175 CGGGACAATTGTAGAGAAAGATGAGA 60.628 42.308 11.95 0.00 0.00 3.27
88 89 6.536941 GGGACAATTGTAGAGAAAGATGAGAC 59.463 42.308 11.95 0.00 0.00 3.36
89 90 7.099764 GGACAATTGTAGAGAAAGATGAGACA 58.900 38.462 11.95 0.00 0.00 3.41
90 91 7.277539 GGACAATTGTAGAGAAAGATGAGACAG 59.722 40.741 11.95 0.00 0.00 3.51
91 92 7.675062 ACAATTGTAGAGAAAGATGAGACAGT 58.325 34.615 9.97 0.00 0.00 3.55
92 93 8.153550 ACAATTGTAGAGAAAGATGAGACAGTT 58.846 33.333 9.97 0.00 0.00 3.16
93 94 8.441608 CAATTGTAGAGAAAGATGAGACAGTTG 58.558 37.037 0.00 0.00 30.32 3.16
94 95 6.901081 TGTAGAGAAAGATGAGACAGTTGA 57.099 37.500 0.00 0.00 0.00 3.18
95 96 6.918626 TGTAGAGAAAGATGAGACAGTTGAG 58.081 40.000 0.00 0.00 0.00 3.02
96 97 5.404466 AGAGAAAGATGAGACAGTTGAGG 57.596 43.478 0.00 0.00 0.00 3.86
97 98 3.932089 GAGAAAGATGAGACAGTTGAGGC 59.068 47.826 0.00 0.00 0.00 4.70
98 99 3.326006 AGAAAGATGAGACAGTTGAGGCA 59.674 43.478 0.00 0.00 0.00 4.75
99 100 3.331478 AAGATGAGACAGTTGAGGCAG 57.669 47.619 0.00 0.00 0.00 4.85
100 101 2.255406 AGATGAGACAGTTGAGGCAGT 58.745 47.619 0.00 0.00 0.00 4.40
101 102 2.636893 AGATGAGACAGTTGAGGCAGTT 59.363 45.455 0.00 0.00 0.00 3.16
102 103 3.834813 AGATGAGACAGTTGAGGCAGTTA 59.165 43.478 0.00 0.00 0.00 2.24
103 104 4.284490 AGATGAGACAGTTGAGGCAGTTAA 59.716 41.667 0.00 0.00 0.00 2.01
104 105 4.623932 TGAGACAGTTGAGGCAGTTAAT 57.376 40.909 0.00 0.00 0.00 1.40
105 106 4.318332 TGAGACAGTTGAGGCAGTTAATG 58.682 43.478 0.00 0.00 0.00 1.90
178 179 2.927553 CACTTAAGTGGCTTGCCATC 57.072 50.000 25.19 11.13 42.10 3.51
179 180 1.474077 CACTTAAGTGGCTTGCCATCC 59.526 52.381 25.19 5.90 42.10 3.51
180 181 1.355720 ACTTAAGTGGCTTGCCATCCT 59.644 47.619 17.86 8.21 0.00 3.24
181 182 2.019984 CTTAAGTGGCTTGCCATCCTC 58.980 52.381 17.86 4.79 0.00 3.71
182 183 0.255890 TAAGTGGCTTGCCATCCTCC 59.744 55.000 17.86 4.41 0.00 4.30
183 184 1.792757 AAGTGGCTTGCCATCCTCCA 61.793 55.000 17.86 0.00 0.00 3.86
184 185 1.076485 GTGGCTTGCCATCCTCCAT 60.076 57.895 17.86 0.00 0.00 3.41
185 186 0.685458 GTGGCTTGCCATCCTCCATT 60.685 55.000 17.86 0.00 0.00 3.16
186 187 0.925558 TGGCTTGCCATCCTCCATTA 59.074 50.000 10.65 0.00 0.00 1.90
187 188 1.133699 TGGCTTGCCATCCTCCATTAG 60.134 52.381 10.65 0.00 0.00 1.73
188 189 1.143684 GGCTTGCCATCCTCCATTAGA 59.856 52.381 6.79 0.00 0.00 2.10
189 190 2.423373 GGCTTGCCATCCTCCATTAGAA 60.423 50.000 6.79 0.00 0.00 2.10
190 191 3.494332 GCTTGCCATCCTCCATTAGAAT 58.506 45.455 0.00 0.00 0.00 2.40
191 192 3.893813 GCTTGCCATCCTCCATTAGAATT 59.106 43.478 0.00 0.00 0.00 2.17
192 193 4.343239 GCTTGCCATCCTCCATTAGAATTT 59.657 41.667 0.00 0.00 0.00 1.82
193 194 5.738208 GCTTGCCATCCTCCATTAGAATTTG 60.738 44.000 0.00 0.00 0.00 2.32
194 195 4.870636 TGCCATCCTCCATTAGAATTTGT 58.129 39.130 0.00 0.00 0.00 2.83
195 196 4.646040 TGCCATCCTCCATTAGAATTTGTG 59.354 41.667 0.00 0.00 0.00 3.33
196 197 4.500375 GCCATCCTCCATTAGAATTTGTGC 60.500 45.833 0.00 0.00 0.00 4.57
197 198 4.038402 CCATCCTCCATTAGAATTTGTGCC 59.962 45.833 0.00 0.00 0.00 5.01
198 199 4.314522 TCCTCCATTAGAATTTGTGCCA 57.685 40.909 0.00 0.00 0.00 4.92
199 200 4.870636 TCCTCCATTAGAATTTGTGCCAT 58.129 39.130 0.00 0.00 0.00 4.40
200 201 4.889409 TCCTCCATTAGAATTTGTGCCATC 59.111 41.667 0.00 0.00 0.00 3.51
201 202 4.038402 CCTCCATTAGAATTTGTGCCATCC 59.962 45.833 0.00 0.00 0.00 3.51
202 203 4.608269 TCCATTAGAATTTGTGCCATCCA 58.392 39.130 0.00 0.00 0.00 3.41
203 204 5.210430 TCCATTAGAATTTGTGCCATCCAT 58.790 37.500 0.00 0.00 0.00 3.41
204 205 5.662208 TCCATTAGAATTTGTGCCATCCATT 59.338 36.000 0.00 0.00 0.00 3.16
205 206 5.756347 CCATTAGAATTTGTGCCATCCATTG 59.244 40.000 0.00 0.00 0.00 2.82
206 207 5.999205 TTAGAATTTGTGCCATCCATTGT 57.001 34.783 0.00 0.00 0.00 2.71
207 208 4.460948 AGAATTTGTGCCATCCATTGTC 57.539 40.909 0.00 0.00 0.00 3.18
208 209 3.196254 AGAATTTGTGCCATCCATTGTCC 59.804 43.478 0.00 0.00 0.00 4.02
209 210 2.006805 TTTGTGCCATCCATTGTCCA 57.993 45.000 0.00 0.00 0.00 4.02
210 211 2.234896 TTGTGCCATCCATTGTCCAT 57.765 45.000 0.00 0.00 0.00 3.41
211 212 1.766494 TGTGCCATCCATTGTCCATC 58.234 50.000 0.00 0.00 0.00 3.51
212 213 1.035139 GTGCCATCCATTGTCCATCC 58.965 55.000 0.00 0.00 0.00 3.51
213 214 0.630134 TGCCATCCATTGTCCATCCA 59.370 50.000 0.00 0.00 0.00 3.41
214 215 1.325355 GCCATCCATTGTCCATCCAG 58.675 55.000 0.00 0.00 0.00 3.86
215 216 1.133699 GCCATCCATTGTCCATCCAGA 60.134 52.381 0.00 0.00 0.00 3.86
216 217 2.490351 GCCATCCATTGTCCATCCAGAT 60.490 50.000 0.00 0.00 0.00 2.90
217 218 3.840991 CCATCCATTGTCCATCCAGATT 58.159 45.455 0.00 0.00 0.00 2.40
218 219 3.825014 CCATCCATTGTCCATCCAGATTC 59.175 47.826 0.00 0.00 0.00 2.52
219 220 3.582998 TCCATTGTCCATCCAGATTCC 57.417 47.619 0.00 0.00 0.00 3.01
220 221 2.851821 TCCATTGTCCATCCAGATTCCA 59.148 45.455 0.00 0.00 0.00 3.53
221 222 3.464456 TCCATTGTCCATCCAGATTCCAT 59.536 43.478 0.00 0.00 0.00 3.41
222 223 3.825014 CCATTGTCCATCCAGATTCCATC 59.175 47.826 0.00 0.00 0.00 3.51
223 224 3.582998 TTGTCCATCCAGATTCCATCC 57.417 47.619 0.00 0.00 0.00 3.51
224 225 2.490961 TGTCCATCCAGATTCCATCCA 58.509 47.619 0.00 0.00 0.00 3.41
225 226 3.058341 TGTCCATCCAGATTCCATCCAT 58.942 45.455 0.00 0.00 0.00 3.41
226 227 3.464456 TGTCCATCCAGATTCCATCCATT 59.536 43.478 0.00 0.00 0.00 3.16
227 228 4.664536 TGTCCATCCAGATTCCATCCATTA 59.335 41.667 0.00 0.00 0.00 1.90
228 229 5.221986 TGTCCATCCAGATTCCATCCATTAG 60.222 44.000 0.00 0.00 0.00 1.73
229 230 5.013495 GTCCATCCAGATTCCATCCATTAGA 59.987 44.000 0.00 0.00 0.00 2.10
230 231 5.612261 TCCATCCAGATTCCATCCATTAGAA 59.388 40.000 0.00 0.00 0.00 2.10
231 232 6.276330 TCCATCCAGATTCCATCCATTAGAAT 59.724 38.462 0.00 0.00 33.01 2.40
232 233 6.952358 CCATCCAGATTCCATCCATTAGAATT 59.048 38.462 0.00 0.00 30.52 2.17
233 234 7.453752 CCATCCAGATTCCATCCATTAGAATTT 59.546 37.037 0.00 0.00 30.52 1.82
234 235 8.521176 CATCCAGATTCCATCCATTAGAATTTC 58.479 37.037 0.00 0.00 30.52 2.17
235 236 6.712095 TCCAGATTCCATCCATTAGAATTTCG 59.288 38.462 0.00 0.00 30.52 3.46
236 237 6.488006 CCAGATTCCATCCATTAGAATTTCGT 59.512 38.462 0.00 0.00 30.52 3.85
237 238 7.661437 CCAGATTCCATCCATTAGAATTTCGTA 59.339 37.037 0.00 0.00 30.52 3.43
238 239 9.056005 CAGATTCCATCCATTAGAATTTCGTAA 57.944 33.333 0.00 0.00 30.52 3.18
239 240 9.627123 AGATTCCATCCATTAGAATTTCGTAAA 57.373 29.630 0.00 0.00 30.52 2.01
243 244 9.627123 TCCATCCATTAGAATTTCGTAAAATCT 57.373 29.630 0.00 0.00 33.93 2.40
253 254 9.052759 AGAATTTCGTAAAATCTACACAACTGT 57.947 29.630 0.00 0.00 33.93 3.55
254 255 9.659830 GAATTTCGTAAAATCTACACAACTGTT 57.340 29.630 0.00 0.00 33.93 3.16
255 256 9.445786 AATTTCGTAAAATCTACACAACTGTTG 57.554 29.630 18.44 18.44 33.93 3.33
256 257 7.773864 TTCGTAAAATCTACACAACTGTTGA 57.226 32.000 26.00 4.46 36.71 3.18
257 258 7.402811 TCGTAAAATCTACACAACTGTTGAG 57.597 36.000 26.00 20.27 35.90 3.02
258 259 6.071463 CGTAAAATCTACACAACTGTTGAGC 58.929 40.000 26.00 2.60 35.90 4.26
259 260 5.438761 AAAATCTACACAACTGTTGAGCC 57.561 39.130 26.00 0.00 35.90 4.70
260 261 4.357918 AATCTACACAACTGTTGAGCCT 57.642 40.909 26.00 6.89 35.90 4.58
261 262 3.838244 TCTACACAACTGTTGAGCCTT 57.162 42.857 26.00 6.22 29.96 4.35
262 263 3.466836 TCTACACAACTGTTGAGCCTTG 58.533 45.455 26.00 15.44 29.96 3.61
263 264 0.740737 ACACAACTGTTGAGCCTTGC 59.259 50.000 26.00 0.00 0.00 4.01
264 265 1.027357 CACAACTGTTGAGCCTTGCT 58.973 50.000 26.00 0.00 43.88 3.91
265 266 1.406539 CACAACTGTTGAGCCTTGCTT 59.593 47.619 26.00 0.00 39.88 3.91
266 267 2.102578 ACAACTGTTGAGCCTTGCTTT 58.897 42.857 26.00 0.00 39.88 3.51
267 268 2.497273 ACAACTGTTGAGCCTTGCTTTT 59.503 40.909 26.00 0.00 39.88 2.27
268 269 3.055891 ACAACTGTTGAGCCTTGCTTTTT 60.056 39.130 26.00 0.00 39.88 1.94
269 270 3.443099 ACTGTTGAGCCTTGCTTTTTC 57.557 42.857 0.00 0.00 39.88 2.29
270 271 3.026694 ACTGTTGAGCCTTGCTTTTTCT 58.973 40.909 0.00 0.00 39.88 2.52
271 272 4.207165 ACTGTTGAGCCTTGCTTTTTCTA 58.793 39.130 0.00 0.00 39.88 2.10
272 273 4.829492 ACTGTTGAGCCTTGCTTTTTCTAT 59.171 37.500 0.00 0.00 39.88 1.98
273 274 5.302823 ACTGTTGAGCCTTGCTTTTTCTATT 59.697 36.000 0.00 0.00 39.88 1.73
274 275 6.160576 TGTTGAGCCTTGCTTTTTCTATTT 57.839 33.333 0.00 0.00 39.88 1.40
275 276 6.581712 TGTTGAGCCTTGCTTTTTCTATTTT 58.418 32.000 0.00 0.00 39.88 1.82
276 277 7.047271 TGTTGAGCCTTGCTTTTTCTATTTTT 58.953 30.769 0.00 0.00 39.88 1.94
277 278 7.011295 TGTTGAGCCTTGCTTTTTCTATTTTTG 59.989 33.333 0.00 0.00 39.88 2.44
278 279 5.466393 TGAGCCTTGCTTTTTCTATTTTTGC 59.534 36.000 0.00 0.00 39.88 3.68
279 280 5.367302 AGCCTTGCTTTTTCTATTTTTGCA 58.633 33.333 0.00 0.00 33.89 4.08
280 281 5.821995 AGCCTTGCTTTTTCTATTTTTGCAA 59.178 32.000 0.00 0.00 33.89 4.08
281 282 5.909054 GCCTTGCTTTTTCTATTTTTGCAAC 59.091 36.000 0.00 0.00 35.52 4.17
282 283 6.128729 CCTTGCTTTTTCTATTTTTGCAACG 58.871 36.000 0.00 0.00 35.52 4.10
283 284 6.238076 CCTTGCTTTTTCTATTTTTGCAACGT 60.238 34.615 0.00 0.00 35.52 3.99
284 285 7.043059 CCTTGCTTTTTCTATTTTTGCAACGTA 60.043 33.333 0.00 0.00 35.52 3.57
285 286 7.757097 TGCTTTTTCTATTTTTGCAACGTAA 57.243 28.000 0.00 0.00 0.00 3.18
287 288 6.785633 GCTTTTTCTATTTTTGCAACGTAAGC 59.214 34.615 0.00 6.00 45.62 3.09
288 289 7.306574 GCTTTTTCTATTTTTGCAACGTAAGCT 60.307 33.333 13.20 0.00 45.62 3.74
289 290 7.617533 TTTTCTATTTTTGCAACGTAAGCTC 57.382 32.000 13.20 0.00 45.62 4.09
290 291 5.933187 TCTATTTTTGCAACGTAAGCTCA 57.067 34.783 13.20 0.00 45.62 4.26
291 292 5.927030 TCTATTTTTGCAACGTAAGCTCAG 58.073 37.500 13.20 3.34 45.62 3.35
292 293 4.829064 ATTTTTGCAACGTAAGCTCAGA 57.171 36.364 13.20 0.00 45.62 3.27
293 294 4.829064 TTTTTGCAACGTAAGCTCAGAT 57.171 36.364 13.20 0.00 45.62 2.90
294 295 4.829064 TTTTGCAACGTAAGCTCAGATT 57.171 36.364 13.20 0.00 45.62 2.40
295 296 4.404507 TTTGCAACGTAAGCTCAGATTC 57.595 40.909 13.20 0.00 45.62 2.52
296 297 3.319137 TGCAACGTAAGCTCAGATTCT 57.681 42.857 13.20 0.00 45.62 2.40
297 298 4.450082 TGCAACGTAAGCTCAGATTCTA 57.550 40.909 13.20 0.00 45.62 2.10
298 299 5.011090 TGCAACGTAAGCTCAGATTCTAT 57.989 39.130 13.20 0.00 45.62 1.98
299 300 5.043903 TGCAACGTAAGCTCAGATTCTATC 58.956 41.667 13.20 0.00 45.62 2.08
300 301 4.446051 GCAACGTAAGCTCAGATTCTATCC 59.554 45.833 5.73 0.00 45.62 2.59
301 302 5.737635 GCAACGTAAGCTCAGATTCTATCCT 60.738 44.000 5.73 0.00 45.62 3.24
302 303 6.515200 GCAACGTAAGCTCAGATTCTATCCTA 60.515 42.308 5.73 0.00 45.62 2.94
303 304 6.811253 ACGTAAGCTCAGATTCTATCCTAG 57.189 41.667 0.00 0.00 45.62 3.02
304 305 6.300703 ACGTAAGCTCAGATTCTATCCTAGT 58.699 40.000 0.00 0.00 45.62 2.57
305 306 6.773685 ACGTAAGCTCAGATTCTATCCTAGTT 59.226 38.462 0.00 0.00 45.62 2.24
306 307 7.081349 CGTAAGCTCAGATTCTATCCTAGTTG 58.919 42.308 0.00 0.00 0.00 3.16
307 308 7.255312 CGTAAGCTCAGATTCTATCCTAGTTGT 60.255 40.741 0.00 0.00 0.00 3.32
308 309 7.430760 AAGCTCAGATTCTATCCTAGTTGTT 57.569 36.000 0.00 0.00 0.00 2.83
309 310 7.049799 AGCTCAGATTCTATCCTAGTTGTTC 57.950 40.000 0.00 0.00 0.00 3.18
310 311 6.041523 AGCTCAGATTCTATCCTAGTTGTTCC 59.958 42.308 0.00 0.00 0.00 3.62
311 312 6.732896 TCAGATTCTATCCTAGTTGTTCCC 57.267 41.667 0.00 0.00 0.00 3.97
312 313 6.444704 TCAGATTCTATCCTAGTTGTTCCCT 58.555 40.000 0.00 0.00 0.00 4.20
313 314 6.551601 TCAGATTCTATCCTAGTTGTTCCCTC 59.448 42.308 0.00 0.00 0.00 4.30
314 315 5.841783 AGATTCTATCCTAGTTGTTCCCTCC 59.158 44.000 0.00 0.00 0.00 4.30
315 316 4.901785 TCTATCCTAGTTGTTCCCTCCT 57.098 45.455 0.00 0.00 0.00 3.69
316 317 5.222278 TCTATCCTAGTTGTTCCCTCCTT 57.778 43.478 0.00 0.00 0.00 3.36
317 318 5.600749 TCTATCCTAGTTGTTCCCTCCTTT 58.399 41.667 0.00 0.00 0.00 3.11
318 319 6.030082 TCTATCCTAGTTGTTCCCTCCTTTT 58.970 40.000 0.00 0.00 0.00 2.27
319 320 4.367039 TCCTAGTTGTTCCCTCCTTTTG 57.633 45.455 0.00 0.00 0.00 2.44
320 321 3.073946 TCCTAGTTGTTCCCTCCTTTTGG 59.926 47.826 0.00 0.00 42.21 3.28
321 322 2.381752 AGTTGTTCCCTCCTTTTGGG 57.618 50.000 0.00 0.00 45.90 4.12
322 323 0.679505 GTTGTTCCCTCCTTTTGGGC 59.320 55.000 0.00 0.00 44.23 5.36
323 324 0.825840 TTGTTCCCTCCTTTTGGGCG 60.826 55.000 0.00 0.00 44.23 6.13
324 325 2.282887 TTCCCTCCTTTTGGGCGC 60.283 61.111 0.00 0.00 44.23 6.53
325 326 3.879180 TTCCCTCCTTTTGGGCGCC 62.879 63.158 21.18 21.18 44.23 6.53
326 327 4.676951 CCCTCCTTTTGGGCGCCA 62.677 66.667 30.85 12.04 40.87 5.69
327 328 2.362889 CCTCCTTTTGGGCGCCAT 60.363 61.111 30.85 0.00 40.87 4.40
328 329 2.713967 CCTCCTTTTGGGCGCCATG 61.714 63.158 30.85 10.03 40.87 3.66
329 330 1.978617 CTCCTTTTGGGCGCCATGT 60.979 57.895 30.85 0.00 40.87 3.21
330 331 2.216750 CTCCTTTTGGGCGCCATGTG 62.217 60.000 30.85 13.48 40.87 3.21
331 332 2.573083 CCTTTTGGGCGCCATGTGT 61.573 57.895 30.85 0.00 31.53 3.72
332 333 1.373246 CTTTTGGGCGCCATGTGTG 60.373 57.895 30.85 9.52 31.53 3.82
365 366 8.989653 TTTTTGTCCGATTTAATTTGTATCCC 57.010 30.769 0.00 0.00 0.00 3.85
366 367 7.948034 TTTGTCCGATTTAATTTGTATCCCT 57.052 32.000 0.00 0.00 0.00 4.20
367 368 9.463902 TTTTGTCCGATTTAATTTGTATCCCTA 57.536 29.630 0.00 0.00 0.00 3.53
368 369 9.635404 TTTGTCCGATTTAATTTGTATCCCTAT 57.365 29.630 0.00 0.00 0.00 2.57
369 370 8.615878 TGTCCGATTTAATTTGTATCCCTATG 57.384 34.615 0.00 0.00 0.00 2.23
370 371 8.433599 TGTCCGATTTAATTTGTATCCCTATGA 58.566 33.333 0.00 0.00 0.00 2.15
371 372 8.718734 GTCCGATTTAATTTGTATCCCTATGAC 58.281 37.037 0.00 0.00 0.00 3.06
372 373 7.881232 TCCGATTTAATTTGTATCCCTATGACC 59.119 37.037 0.00 0.00 0.00 4.02
373 374 7.663905 CCGATTTAATTTGTATCCCTATGACCA 59.336 37.037 0.00 0.00 0.00 4.02
374 375 9.231297 CGATTTAATTTGTATCCCTATGACCAT 57.769 33.333 0.00 0.00 0.00 3.55
377 378 9.928618 TTTAATTTGTATCCCTATGACCATTGA 57.071 29.630 0.00 0.00 0.00 2.57
380 381 9.520515 AATTTGTATCCCTATGACCATTGATAC 57.479 33.333 13.86 13.86 0.00 2.24
381 382 7.872061 TTGTATCCCTATGACCATTGATACT 57.128 36.000 17.68 0.00 0.00 2.12
382 383 7.872061 TGTATCCCTATGACCATTGATACTT 57.128 36.000 17.68 0.00 0.00 2.24
383 384 8.966155 TGTATCCCTATGACCATTGATACTTA 57.034 34.615 17.68 6.15 0.00 2.24
384 385 9.560860 TGTATCCCTATGACCATTGATACTTAT 57.439 33.333 17.68 0.00 0.00 1.73
387 388 9.790297 ATCCCTATGACCATTGATACTTATACT 57.210 33.333 0.00 0.00 0.00 2.12
388 389 9.615660 TCCCTATGACCATTGATACTTATACTT 57.384 33.333 0.00 0.00 0.00 2.24
442 443 5.584551 AAAACTATCCAACCACTTCTCCT 57.415 39.130 0.00 0.00 0.00 3.69
487 488 1.134818 ACTCTGTTGTGTGAAGTGCGA 60.135 47.619 0.00 0.00 0.00 5.10
502 503 2.604174 GCGAATTACGATGCCCCGG 61.604 63.158 0.00 0.00 45.77 5.73
683 685 1.488705 AACACCATTCCTCGCCTCCA 61.489 55.000 0.00 0.00 0.00 3.86
741 743 1.957695 GCATCGCATCGCATCTCCA 60.958 57.895 0.00 0.00 0.00 3.86
745 747 1.301165 CGCATCGCATCTCCATCCA 60.301 57.895 0.00 0.00 0.00 3.41
953 959 3.498661 GCCCATAGTTTAATCCCAGAGGG 60.499 52.174 0.00 0.00 46.11 4.30
1734 1741 7.383300 TGCATCAAACTATCTATTGATCGTCTG 59.617 37.037 0.00 0.00 42.72 3.51
1736 1743 9.127006 CATCAAACTATCTATTGATCGTCTGAG 57.873 37.037 4.65 0.00 42.72 3.35
1795 1802 3.674753 GTCATCAAAACGGGAAATGCAAG 59.325 43.478 0.00 0.00 0.00 4.01
1831 1838 5.165961 ACTCTCGAAAGAAATGGGAATCA 57.834 39.130 0.00 0.00 41.32 2.57
1878 1885 1.346395 TGGCCTTCTCGCACTTCTAAA 59.654 47.619 3.32 0.00 0.00 1.85
2413 2420 6.142817 CCTATTTTTCTTGTGGTGAGTTTCG 58.857 40.000 0.00 0.00 0.00 3.46
2417 2424 0.588252 CTTGTGGTGAGTTTCGGCAG 59.412 55.000 0.00 0.00 0.00 4.85
2424 2431 0.881118 TGAGTTTCGGCAGCCAATTC 59.119 50.000 13.30 6.17 0.00 2.17
2449 2456 0.311790 AAACAGCCACGCTTGATGTG 59.688 50.000 0.00 0.00 36.40 3.21
2591 2598 0.251165 TGGAAGCCAGGGTTACAAGC 60.251 55.000 14.42 0.00 30.44 4.01
2748 2756 4.694339 ACGAGGTTCATACTCTTATTGGC 58.306 43.478 0.00 0.00 32.83 4.52
2945 2953 5.337250 ACTGTGTAGTTTGTCACTTGAGTGA 60.337 40.000 9.67 9.67 42.70 3.41
3460 3552 5.312079 GCTATTGACCTAATTGATGAGGCT 58.688 41.667 0.00 0.00 36.17 4.58
3659 3751 6.433716 TGCTGGTAGATGTTCAATTCATTTCA 59.566 34.615 0.00 0.00 0.00 2.69
3922 4014 4.156739 GGGTTAGAGGAAATTGCAAGAGTG 59.843 45.833 4.94 0.00 0.00 3.51
3937 4029 3.340814 AGAGTGACATCATTGTGGTCC 57.659 47.619 7.60 0.00 35.79 4.46
4235 4327 7.931407 ACTCAACTTACAGAACATGTTACATCA 59.069 33.333 11.95 0.00 39.96 3.07
4518 4610 2.763448 GACTCACAGGTGCTAGATCCTT 59.237 50.000 0.00 0.00 30.91 3.36
4689 4781 2.081462 TCAGTCTGATGTGCATTGCTG 58.919 47.619 10.49 0.00 0.00 4.41
4907 4999 8.478066 ACAGAAGAGAACACATATGCTGTAATA 58.522 33.333 1.58 0.00 35.91 0.98
5108 5200 1.608590 CCGGTCCATTTGTATGCCATC 59.391 52.381 0.00 0.00 0.00 3.51
5140 5232 2.335712 GCTGCAACCCCTTTCCTCG 61.336 63.158 0.00 0.00 0.00 4.63
5254 5366 8.151596 TGTTGTATTACACCTTCTAACATGTCA 58.848 33.333 0.00 0.00 0.00 3.58
5298 5410 1.729149 GCAAATGGCGCACTAACAGTC 60.729 52.381 10.83 0.00 0.00 3.51
5388 5500 2.350580 GCTCGGTATCGGCTTAGTAGTG 60.351 54.545 0.00 0.00 36.95 2.74
5613 5725 5.192927 ACTGTTCAAGTTTCTGATCCAACA 58.807 37.500 0.00 0.00 34.57 3.33
5642 5754 0.183492 TGAAGGCTTGAGCACCAGTT 59.817 50.000 3.46 0.00 44.36 3.16
5651 5763 4.695455 GCTTGAGCACCAGTTTATAGTGAA 59.305 41.667 0.00 0.00 41.59 3.18
5687 5799 2.156891 TCGTCGCTGTTGATAAACTTGC 59.843 45.455 0.00 0.00 0.00 4.01
5857 5969 6.316890 CCCAGCCCATTTTTAATTTCTCATTG 59.683 38.462 0.00 0.00 0.00 2.82
5913 6025 2.478134 CTGCTATTGCGTCTAATGCCTC 59.522 50.000 0.00 0.00 43.34 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.882678 GCCTCATTCCCTGTTAGTTTTACTAA 59.117 38.462 0.00 0.00 38.28 2.24
2 3 6.412214 GCCTCATTCCCTGTTAGTTTTACTA 58.588 40.000 0.00 0.00 0.00 1.82
3 4 5.254115 GCCTCATTCCCTGTTAGTTTTACT 58.746 41.667 0.00 0.00 0.00 2.24
4 5 4.094442 CGCCTCATTCCCTGTTAGTTTTAC 59.906 45.833 0.00 0.00 0.00 2.01
5 6 4.258543 CGCCTCATTCCCTGTTAGTTTTA 58.741 43.478 0.00 0.00 0.00 1.52
6 7 3.081804 CGCCTCATTCCCTGTTAGTTTT 58.918 45.455 0.00 0.00 0.00 2.43
7 8 2.039879 ACGCCTCATTCCCTGTTAGTTT 59.960 45.455 0.00 0.00 0.00 2.66
8 9 1.628846 ACGCCTCATTCCCTGTTAGTT 59.371 47.619 0.00 0.00 0.00 2.24
9 10 1.207329 GACGCCTCATTCCCTGTTAGT 59.793 52.381 0.00 0.00 0.00 2.24
10 11 1.207089 TGACGCCTCATTCCCTGTTAG 59.793 52.381 0.00 0.00 0.00 2.34
11 12 1.271856 TGACGCCTCATTCCCTGTTA 58.728 50.000 0.00 0.00 0.00 2.41
12 13 0.620556 ATGACGCCTCATTCCCTGTT 59.379 50.000 0.00 0.00 32.79 3.16
13 14 0.107508 CATGACGCCTCATTCCCTGT 60.108 55.000 0.00 0.00 34.65 4.00
14 15 0.178767 TCATGACGCCTCATTCCCTG 59.821 55.000 0.00 0.00 34.65 4.45
15 16 0.179000 GTCATGACGCCTCATTCCCT 59.821 55.000 10.69 0.00 34.65 4.20
16 17 0.179000 AGTCATGACGCCTCATTCCC 59.821 55.000 19.85 0.00 34.65 3.97
17 18 1.293924 CAGTCATGACGCCTCATTCC 58.706 55.000 19.85 0.00 34.65 3.01
18 19 1.662629 CACAGTCATGACGCCTCATTC 59.337 52.381 19.85 0.00 34.65 2.67
19 20 1.730501 CACAGTCATGACGCCTCATT 58.269 50.000 19.85 0.00 34.65 2.57
20 21 0.742281 GCACAGTCATGACGCCTCAT 60.742 55.000 19.85 0.00 37.65 2.90
21 22 1.374631 GCACAGTCATGACGCCTCA 60.375 57.895 19.85 0.00 36.20 3.86
22 23 1.357258 CTGCACAGTCATGACGCCTC 61.357 60.000 19.85 11.34 36.20 4.70
23 24 1.375140 CTGCACAGTCATGACGCCT 60.375 57.895 19.85 0.00 36.20 5.52
24 25 0.742281 ATCTGCACAGTCATGACGCC 60.742 55.000 19.85 10.05 36.20 5.68
25 26 0.649475 GATCTGCACAGTCATGACGC 59.351 55.000 19.85 17.15 36.20 5.19
26 27 2.290531 AGATCTGCACAGTCATGACG 57.709 50.000 19.85 16.37 36.20 4.35
27 28 7.095313 CCATTTATAGATCTGCACAGTCATGAC 60.095 40.741 18.47 18.47 0.00 3.06
28 29 6.932960 CCATTTATAGATCTGCACAGTCATGA 59.067 38.462 5.18 0.00 0.00 3.07
29 30 6.709397 ACCATTTATAGATCTGCACAGTCATG 59.291 38.462 5.18 0.00 0.00 3.07
30 31 6.835174 ACCATTTATAGATCTGCACAGTCAT 58.165 36.000 5.18 0.00 0.00 3.06
31 32 6.239217 ACCATTTATAGATCTGCACAGTCA 57.761 37.500 5.18 0.00 0.00 3.41
32 33 6.540189 ACAACCATTTATAGATCTGCACAGTC 59.460 38.462 5.18 0.00 0.00 3.51
33 34 6.418101 ACAACCATTTATAGATCTGCACAGT 58.582 36.000 5.18 0.00 0.00 3.55
34 35 6.932356 ACAACCATTTATAGATCTGCACAG 57.068 37.500 5.18 0.00 0.00 3.66
35 36 6.095300 CCAACAACCATTTATAGATCTGCACA 59.905 38.462 5.18 0.00 0.00 4.57
36 37 6.318648 TCCAACAACCATTTATAGATCTGCAC 59.681 38.462 5.18 0.00 0.00 4.57
37 38 6.318648 GTCCAACAACCATTTATAGATCTGCA 59.681 38.462 5.18 0.00 0.00 4.41
38 39 6.511767 CGTCCAACAACCATTTATAGATCTGC 60.512 42.308 5.18 0.00 0.00 4.26
39 40 6.017934 CCGTCCAACAACCATTTATAGATCTG 60.018 42.308 5.18 0.00 0.00 2.90
40 41 6.055588 CCGTCCAACAACCATTTATAGATCT 58.944 40.000 0.00 0.00 0.00 2.75
41 42 5.238650 CCCGTCCAACAACCATTTATAGATC 59.761 44.000 0.00 0.00 0.00 2.75
42 43 5.104277 TCCCGTCCAACAACCATTTATAGAT 60.104 40.000 0.00 0.00 0.00 1.98
43 44 4.225492 TCCCGTCCAACAACCATTTATAGA 59.775 41.667 0.00 0.00 0.00 1.98
44 45 4.334481 GTCCCGTCCAACAACCATTTATAG 59.666 45.833 0.00 0.00 0.00 1.31
45 46 4.263374 TGTCCCGTCCAACAACCATTTATA 60.263 41.667 0.00 0.00 0.00 0.98
46 47 3.086282 GTCCCGTCCAACAACCATTTAT 58.914 45.455 0.00 0.00 0.00 1.40
47 48 2.158652 TGTCCCGTCCAACAACCATTTA 60.159 45.455 0.00 0.00 0.00 1.40
48 49 1.324383 GTCCCGTCCAACAACCATTT 58.676 50.000 0.00 0.00 0.00 2.32
49 50 0.183971 TGTCCCGTCCAACAACCATT 59.816 50.000 0.00 0.00 0.00 3.16
50 51 0.183971 TTGTCCCGTCCAACAACCAT 59.816 50.000 0.00 0.00 30.73 3.55
51 52 0.183971 ATTGTCCCGTCCAACAACCA 59.816 50.000 0.00 0.00 38.14 3.67
52 53 1.000717 CAATTGTCCCGTCCAACAACC 60.001 52.381 0.00 0.00 38.14 3.77
53 54 1.679153 ACAATTGTCCCGTCCAACAAC 59.321 47.619 4.92 0.00 38.14 3.32
54 55 2.060050 ACAATTGTCCCGTCCAACAA 57.940 45.000 4.92 0.00 39.52 2.83
55 56 2.369203 TCTACAATTGTCCCGTCCAACA 59.631 45.455 15.85 0.00 0.00 3.33
56 57 3.000727 CTCTACAATTGTCCCGTCCAAC 58.999 50.000 15.85 0.00 0.00 3.77
57 58 2.901192 TCTCTACAATTGTCCCGTCCAA 59.099 45.455 15.85 0.00 0.00 3.53
58 59 2.531771 TCTCTACAATTGTCCCGTCCA 58.468 47.619 15.85 0.00 0.00 4.02
59 60 3.604875 TTCTCTACAATTGTCCCGTCC 57.395 47.619 15.85 0.00 0.00 4.79
60 61 4.817517 TCTTTCTCTACAATTGTCCCGTC 58.182 43.478 15.85 0.00 0.00 4.79
61 62 4.884668 TCTTTCTCTACAATTGTCCCGT 57.115 40.909 15.85 0.00 0.00 5.28
62 63 5.419542 TCATCTTTCTCTACAATTGTCCCG 58.580 41.667 15.85 5.27 0.00 5.14
63 64 6.536941 GTCTCATCTTTCTCTACAATTGTCCC 59.463 42.308 15.85 0.00 0.00 4.46
64 65 7.099764 TGTCTCATCTTTCTCTACAATTGTCC 58.900 38.462 15.85 0.00 0.00 4.02
65 66 7.816995 ACTGTCTCATCTTTCTCTACAATTGTC 59.183 37.037 15.85 0.00 0.00 3.18
66 67 7.675062 ACTGTCTCATCTTTCTCTACAATTGT 58.325 34.615 16.68 16.68 0.00 2.71
67 68 8.441608 CAACTGTCTCATCTTTCTCTACAATTG 58.558 37.037 3.24 3.24 0.00 2.32
68 69 8.370940 TCAACTGTCTCATCTTTCTCTACAATT 58.629 33.333 0.00 0.00 0.00 2.32
69 70 7.901029 TCAACTGTCTCATCTTTCTCTACAAT 58.099 34.615 0.00 0.00 0.00 2.71
70 71 7.290110 TCAACTGTCTCATCTTTCTCTACAA 57.710 36.000 0.00 0.00 0.00 2.41
71 72 6.071672 CCTCAACTGTCTCATCTTTCTCTACA 60.072 42.308 0.00 0.00 0.00 2.74
72 73 6.329496 CCTCAACTGTCTCATCTTTCTCTAC 58.671 44.000 0.00 0.00 0.00 2.59
73 74 5.105554 GCCTCAACTGTCTCATCTTTCTCTA 60.106 44.000 0.00 0.00 0.00 2.43
74 75 4.322650 GCCTCAACTGTCTCATCTTTCTCT 60.323 45.833 0.00 0.00 0.00 3.10
75 76 3.932089 GCCTCAACTGTCTCATCTTTCTC 59.068 47.826 0.00 0.00 0.00 2.87
76 77 3.326006 TGCCTCAACTGTCTCATCTTTCT 59.674 43.478 0.00 0.00 0.00 2.52
77 78 3.668447 TGCCTCAACTGTCTCATCTTTC 58.332 45.455 0.00 0.00 0.00 2.62
78 79 3.072184 ACTGCCTCAACTGTCTCATCTTT 59.928 43.478 0.00 0.00 0.00 2.52
79 80 2.636893 ACTGCCTCAACTGTCTCATCTT 59.363 45.455 0.00 0.00 0.00 2.40
80 81 2.255406 ACTGCCTCAACTGTCTCATCT 58.745 47.619 0.00 0.00 0.00 2.90
81 82 2.758736 ACTGCCTCAACTGTCTCATC 57.241 50.000 0.00 0.00 0.00 2.92
82 83 4.623932 TTAACTGCCTCAACTGTCTCAT 57.376 40.909 0.00 0.00 0.00 2.90
83 84 4.318332 CATTAACTGCCTCAACTGTCTCA 58.682 43.478 0.00 0.00 0.00 3.27
84 85 3.126000 GCATTAACTGCCTCAACTGTCTC 59.874 47.826 0.08 0.00 45.66 3.36
85 86 3.077359 GCATTAACTGCCTCAACTGTCT 58.923 45.455 0.08 0.00 45.66 3.41
86 87 3.477899 GCATTAACTGCCTCAACTGTC 57.522 47.619 0.08 0.00 45.66 3.51
92 93 7.525194 AACATAATGTTTGCATTAACTGCCTCA 60.525 33.333 3.11 5.12 46.73 3.86
93 94 6.813152 AACATAATGTTTGCATTAACTGCCTC 59.187 34.615 3.11 1.03 46.73 4.70
94 95 6.700352 AACATAATGTTTGCATTAACTGCCT 58.300 32.000 3.11 0.00 46.73 4.75
95 96 6.966435 AACATAATGTTTGCATTAACTGCC 57.034 33.333 3.11 0.00 46.73 4.85
144 145 9.738832 GCCACTTAAGTGTAGATTTTACAAAAA 57.261 29.630 29.05 0.00 44.21 1.94
145 146 9.127277 AGCCACTTAAGTGTAGATTTTACAAAA 57.873 29.630 29.05 0.00 44.21 2.44
146 147 8.685838 AGCCACTTAAGTGTAGATTTTACAAA 57.314 30.769 29.05 0.00 44.21 2.83
147 148 8.564574 CAAGCCACTTAAGTGTAGATTTTACAA 58.435 33.333 29.05 0.00 44.21 2.41
148 149 7.308348 GCAAGCCACTTAAGTGTAGATTTTACA 60.308 37.037 29.05 0.00 44.21 2.41
149 150 7.021790 GCAAGCCACTTAAGTGTAGATTTTAC 58.978 38.462 29.05 11.31 44.21 2.01
150 151 6.150474 GGCAAGCCACTTAAGTGTAGATTTTA 59.850 38.462 29.05 0.00 44.21 1.52
151 152 5.048013 GGCAAGCCACTTAAGTGTAGATTTT 60.048 40.000 29.05 13.65 44.21 1.82
152 153 4.459337 GGCAAGCCACTTAAGTGTAGATTT 59.541 41.667 29.05 15.08 44.21 2.17
153 154 4.010349 GGCAAGCCACTTAAGTGTAGATT 58.990 43.478 29.05 18.82 44.21 2.40
154 155 3.009033 TGGCAAGCCACTTAAGTGTAGAT 59.991 43.478 29.05 14.43 44.21 1.98
155 156 2.370519 TGGCAAGCCACTTAAGTGTAGA 59.629 45.455 29.05 7.51 44.21 2.59
156 157 2.778299 TGGCAAGCCACTTAAGTGTAG 58.222 47.619 29.05 18.25 44.21 2.74
157 158 2.940994 TGGCAAGCCACTTAAGTGTA 57.059 45.000 29.05 8.03 44.21 2.90
158 159 3.819245 TGGCAAGCCACTTAAGTGT 57.181 47.368 29.05 13.02 44.21 3.55
168 169 1.143684 TCTAATGGAGGATGGCAAGCC 59.856 52.381 3.61 3.61 0.00 4.35
169 170 2.645838 TCTAATGGAGGATGGCAAGC 57.354 50.000 0.00 0.00 0.00 4.01
170 171 5.361857 ACAAATTCTAATGGAGGATGGCAAG 59.638 40.000 0.00 0.00 0.00 4.01
171 172 5.127519 CACAAATTCTAATGGAGGATGGCAA 59.872 40.000 0.00 0.00 0.00 4.52
172 173 4.646040 CACAAATTCTAATGGAGGATGGCA 59.354 41.667 0.00 0.00 0.00 4.92
173 174 4.500375 GCACAAATTCTAATGGAGGATGGC 60.500 45.833 0.00 0.00 0.00 4.40
174 175 4.038402 GGCACAAATTCTAATGGAGGATGG 59.962 45.833 0.00 0.00 0.00 3.51
175 176 4.646040 TGGCACAAATTCTAATGGAGGATG 59.354 41.667 0.00 0.00 31.92 3.51
176 177 4.870636 TGGCACAAATTCTAATGGAGGAT 58.129 39.130 0.00 0.00 31.92 3.24
177 178 4.314522 TGGCACAAATTCTAATGGAGGA 57.685 40.909 0.00 0.00 31.92 3.71
193 194 1.035139 GGATGGACAATGGATGGCAC 58.965 55.000 0.00 0.00 39.66 5.01
194 195 0.630134 TGGATGGACAATGGATGGCA 59.370 50.000 0.00 0.00 39.66 4.92
195 196 1.133699 TCTGGATGGACAATGGATGGC 60.134 52.381 0.00 0.00 35.73 4.40
196 197 3.520691 ATCTGGATGGACAATGGATGG 57.479 47.619 0.00 0.00 0.00 3.51
197 198 3.825014 GGAATCTGGATGGACAATGGATG 59.175 47.826 0.00 0.00 0.00 3.51
198 199 3.464456 TGGAATCTGGATGGACAATGGAT 59.536 43.478 0.00 0.00 0.00 3.41
199 200 2.851821 TGGAATCTGGATGGACAATGGA 59.148 45.455 0.00 0.00 0.00 3.41
200 201 3.301794 TGGAATCTGGATGGACAATGG 57.698 47.619 0.00 0.00 0.00 3.16
201 202 3.825014 GGATGGAATCTGGATGGACAATG 59.175 47.826 0.00 0.00 44.71 2.82
202 203 3.464456 TGGATGGAATCTGGATGGACAAT 59.536 43.478 0.00 0.00 44.71 2.71
203 204 2.851821 TGGATGGAATCTGGATGGACAA 59.148 45.455 0.00 0.00 44.71 3.18
204 205 2.490961 TGGATGGAATCTGGATGGACA 58.509 47.619 0.00 0.00 44.71 4.02
205 206 3.803186 ATGGATGGAATCTGGATGGAC 57.197 47.619 0.00 0.00 44.71 4.02
206 207 5.164897 TCTAATGGATGGAATCTGGATGGA 58.835 41.667 0.00 0.00 44.71 3.41
207 208 5.509832 TCTAATGGATGGAATCTGGATGG 57.490 43.478 0.00 0.00 44.71 3.51
208 209 8.418597 AAATTCTAATGGATGGAATCTGGATG 57.581 34.615 0.00 0.00 44.71 3.51
209 210 7.392673 CGAAATTCTAATGGATGGAATCTGGAT 59.607 37.037 0.00 0.00 44.71 3.41
210 211 6.712095 CGAAATTCTAATGGATGGAATCTGGA 59.288 38.462 0.00 0.00 44.71 3.86
211 212 6.488006 ACGAAATTCTAATGGATGGAATCTGG 59.512 38.462 0.00 0.00 44.71 3.86
212 213 7.502120 ACGAAATTCTAATGGATGGAATCTG 57.498 36.000 0.00 0.00 44.71 2.90
213 214 9.627123 TTTACGAAATTCTAATGGATGGAATCT 57.373 29.630 0.00 0.00 44.71 2.40
217 218 9.627123 AGATTTTACGAAATTCTAATGGATGGA 57.373 29.630 0.00 0.00 35.65 3.41
227 228 9.052759 ACAGTTGTGTAGATTTTACGAAATTCT 57.947 29.630 0.00 0.14 33.52 2.40
228 229 9.659830 AACAGTTGTGTAGATTTTACGAAATTC 57.340 29.630 0.00 0.00 35.08 2.17
229 230 9.445786 CAACAGTTGTGTAGATTTTACGAAATT 57.554 29.630 4.99 0.00 35.08 1.82
230 231 8.832521 TCAACAGTTGTGTAGATTTTACGAAAT 58.167 29.630 13.14 0.00 35.08 2.17
231 232 8.199176 TCAACAGTTGTGTAGATTTTACGAAA 57.801 30.769 13.14 0.00 35.08 3.46
232 233 7.517734 GCTCAACAGTTGTGTAGATTTTACGAA 60.518 37.037 13.14 0.00 35.08 3.85
233 234 6.073980 GCTCAACAGTTGTGTAGATTTTACGA 60.074 38.462 13.14 0.00 35.08 3.43
234 235 6.071463 GCTCAACAGTTGTGTAGATTTTACG 58.929 40.000 13.14 0.00 35.08 3.18
235 236 6.204882 AGGCTCAACAGTTGTGTAGATTTTAC 59.795 38.462 13.14 0.00 35.08 2.01
236 237 6.296026 AGGCTCAACAGTTGTGTAGATTTTA 58.704 36.000 13.14 0.00 35.08 1.52
237 238 5.133221 AGGCTCAACAGTTGTGTAGATTTT 58.867 37.500 13.14 0.00 35.08 1.82
238 239 4.718961 AGGCTCAACAGTTGTGTAGATTT 58.281 39.130 13.14 0.00 35.08 2.17
239 240 4.357918 AGGCTCAACAGTTGTGTAGATT 57.642 40.909 13.14 0.00 35.08 2.40
240 241 4.067896 CAAGGCTCAACAGTTGTGTAGAT 58.932 43.478 13.14 0.00 35.08 1.98
241 242 3.466836 CAAGGCTCAACAGTTGTGTAGA 58.533 45.455 13.14 0.00 35.08 2.59
242 243 2.031682 GCAAGGCTCAACAGTTGTGTAG 60.032 50.000 13.14 4.78 35.08 2.74
243 244 1.946768 GCAAGGCTCAACAGTTGTGTA 59.053 47.619 13.14 0.00 35.08 2.90
244 245 0.740737 GCAAGGCTCAACAGTTGTGT 59.259 50.000 13.14 0.00 39.19 3.72
245 246 1.027357 AGCAAGGCTCAACAGTTGTG 58.973 50.000 13.14 11.73 30.62 3.33
246 247 1.767759 AAGCAAGGCTCAACAGTTGT 58.232 45.000 13.14 0.00 38.25 3.32
247 248 2.877043 AAAGCAAGGCTCAACAGTTG 57.123 45.000 6.99 6.99 38.25 3.16
248 249 3.448660 AGAAAAAGCAAGGCTCAACAGTT 59.551 39.130 0.00 0.00 38.25 3.16
249 250 3.026694 AGAAAAAGCAAGGCTCAACAGT 58.973 40.909 0.00 0.00 38.25 3.55
250 251 3.722728 AGAAAAAGCAAGGCTCAACAG 57.277 42.857 0.00 0.00 38.25 3.16
251 252 5.789643 AATAGAAAAAGCAAGGCTCAACA 57.210 34.783 0.00 0.00 38.25 3.33
252 253 7.347448 CAAAAATAGAAAAAGCAAGGCTCAAC 58.653 34.615 0.00 0.00 38.25 3.18
253 254 6.018016 GCAAAAATAGAAAAAGCAAGGCTCAA 60.018 34.615 0.00 0.00 38.25 3.02
254 255 5.466393 GCAAAAATAGAAAAAGCAAGGCTCA 59.534 36.000 0.00 0.00 38.25 4.26
255 256 5.466393 TGCAAAAATAGAAAAAGCAAGGCTC 59.534 36.000 0.00 0.00 38.25 4.70
256 257 5.367302 TGCAAAAATAGAAAAAGCAAGGCT 58.633 33.333 0.00 0.00 42.56 4.58
257 258 5.671742 TGCAAAAATAGAAAAAGCAAGGC 57.328 34.783 0.00 0.00 0.00 4.35
258 259 6.128729 CGTTGCAAAAATAGAAAAAGCAAGG 58.871 36.000 0.00 0.00 40.63 3.61
259 260 6.704819 ACGTTGCAAAAATAGAAAAAGCAAG 58.295 32.000 0.00 0.00 40.63 4.01
260 261 6.654793 ACGTTGCAAAAATAGAAAAAGCAA 57.345 29.167 0.00 0.00 38.07 3.91
261 262 7.515998 GCTTACGTTGCAAAAATAGAAAAAGCA 60.516 33.333 0.00 0.00 34.68 3.91
262 263 6.785633 GCTTACGTTGCAAAAATAGAAAAAGC 59.214 34.615 0.00 3.33 0.00 3.51
263 264 8.061125 AGCTTACGTTGCAAAAATAGAAAAAG 57.939 30.769 0.00 0.00 0.00 2.27
264 265 7.702772 TGAGCTTACGTTGCAAAAATAGAAAAA 59.297 29.630 0.00 0.00 0.00 1.94
265 266 7.197017 TGAGCTTACGTTGCAAAAATAGAAAA 58.803 30.769 0.00 0.00 0.00 2.29
266 267 6.730175 TGAGCTTACGTTGCAAAAATAGAAA 58.270 32.000 0.00 0.00 0.00 2.52
267 268 6.203915 TCTGAGCTTACGTTGCAAAAATAGAA 59.796 34.615 0.00 0.00 0.00 2.10
268 269 5.699001 TCTGAGCTTACGTTGCAAAAATAGA 59.301 36.000 0.00 6.54 0.00 1.98
269 270 5.927030 TCTGAGCTTACGTTGCAAAAATAG 58.073 37.500 0.00 0.00 0.00 1.73
270 271 5.933187 TCTGAGCTTACGTTGCAAAAATA 57.067 34.783 0.00 0.00 0.00 1.40
271 272 4.829064 TCTGAGCTTACGTTGCAAAAAT 57.171 36.364 0.00 0.00 0.00 1.82
272 273 4.829064 ATCTGAGCTTACGTTGCAAAAA 57.171 36.364 0.00 0.00 0.00 1.94
273 274 4.515191 AGAATCTGAGCTTACGTTGCAAAA 59.485 37.500 0.00 0.00 0.00 2.44
274 275 4.065088 AGAATCTGAGCTTACGTTGCAAA 58.935 39.130 0.00 2.90 0.00 3.68
275 276 3.664107 AGAATCTGAGCTTACGTTGCAA 58.336 40.909 14.14 0.00 0.00 4.08
276 277 3.319137 AGAATCTGAGCTTACGTTGCA 57.681 42.857 14.14 0.00 0.00 4.08
277 278 4.446051 GGATAGAATCTGAGCTTACGTTGC 59.554 45.833 0.00 0.00 0.00 4.17
278 279 5.837437 AGGATAGAATCTGAGCTTACGTTG 58.163 41.667 0.00 0.00 0.00 4.10
279 280 6.773685 ACTAGGATAGAATCTGAGCTTACGTT 59.226 38.462 0.00 0.00 42.77 3.99
280 281 6.300703 ACTAGGATAGAATCTGAGCTTACGT 58.699 40.000 0.00 0.00 42.77 3.57
281 282 6.811253 ACTAGGATAGAATCTGAGCTTACG 57.189 41.667 0.00 0.00 42.77 3.18
282 283 7.947282 ACAACTAGGATAGAATCTGAGCTTAC 58.053 38.462 0.00 0.00 42.77 2.34
283 284 8.540507 AACAACTAGGATAGAATCTGAGCTTA 57.459 34.615 0.00 0.00 42.77 3.09
284 285 7.418483 GGAACAACTAGGATAGAATCTGAGCTT 60.418 40.741 0.00 0.00 42.77 3.74
285 286 6.041523 GGAACAACTAGGATAGAATCTGAGCT 59.958 42.308 0.00 0.00 42.77 4.09
286 287 6.220201 GGAACAACTAGGATAGAATCTGAGC 58.780 44.000 0.00 0.00 42.77 4.26
287 288 6.553100 AGGGAACAACTAGGATAGAATCTGAG 59.447 42.308 0.00 0.00 42.77 3.35
288 289 6.444704 AGGGAACAACTAGGATAGAATCTGA 58.555 40.000 0.00 0.00 42.77 3.27
289 290 6.239458 GGAGGGAACAACTAGGATAGAATCTG 60.239 46.154 0.00 0.00 42.77 2.90
290 291 5.841783 GGAGGGAACAACTAGGATAGAATCT 59.158 44.000 0.00 0.00 42.77 2.40
291 292 5.841783 AGGAGGGAACAACTAGGATAGAATC 59.158 44.000 0.00 0.00 42.77 2.52
292 293 5.793967 AGGAGGGAACAACTAGGATAGAAT 58.206 41.667 0.00 0.00 42.77 2.40
293 294 5.222278 AGGAGGGAACAACTAGGATAGAA 57.778 43.478 0.00 0.00 42.77 2.10
294 295 4.901785 AGGAGGGAACAACTAGGATAGA 57.098 45.455 0.00 0.00 42.77 1.98
295 296 5.959583 AAAGGAGGGAACAACTAGGATAG 57.040 43.478 0.00 0.00 46.50 2.08
296 297 5.045140 CCAAAAGGAGGGAACAACTAGGATA 60.045 44.000 0.00 0.00 0.00 2.59
297 298 4.263949 CCAAAAGGAGGGAACAACTAGGAT 60.264 45.833 0.00 0.00 0.00 3.24
298 299 3.073946 CCAAAAGGAGGGAACAACTAGGA 59.926 47.826 0.00 0.00 0.00 2.94
299 300 3.421844 CCAAAAGGAGGGAACAACTAGG 58.578 50.000 0.00 0.00 0.00 3.02
310 311 2.362889 ATGGCGCCCAAAAGGAGG 60.363 61.111 26.77 0.00 36.95 4.30
311 312 1.978617 ACATGGCGCCCAAAAGGAG 60.979 57.895 26.77 6.98 36.95 3.69
312 313 2.117206 ACATGGCGCCCAAAAGGA 59.883 55.556 26.77 2.60 36.95 3.36
313 314 2.262292 CACATGGCGCCCAAAAGG 59.738 61.111 26.77 9.64 36.95 3.11
314 315 1.373246 CACACATGGCGCCCAAAAG 60.373 57.895 26.77 12.73 36.95 2.27
315 316 2.733301 CACACATGGCGCCCAAAA 59.267 55.556 26.77 4.98 36.95 2.44
316 317 3.301554 CCACACATGGCGCCCAAA 61.302 61.111 26.77 5.45 39.82 3.28
340 341 8.808092 AGGGATACAAATTAAATCGGACAAAAA 58.192 29.630 0.00 0.00 39.74 1.94
341 342 8.356000 AGGGATACAAATTAAATCGGACAAAA 57.644 30.769 0.00 0.00 39.74 2.44
342 343 7.948034 AGGGATACAAATTAAATCGGACAAA 57.052 32.000 0.00 0.00 39.74 2.83
343 344 9.062524 CATAGGGATACAAATTAAATCGGACAA 57.937 33.333 0.00 0.00 39.74 3.18
344 345 8.433599 TCATAGGGATACAAATTAAATCGGACA 58.566 33.333 0.00 0.00 39.74 4.02
345 346 8.718734 GTCATAGGGATACAAATTAAATCGGAC 58.281 37.037 0.00 0.00 39.74 4.79
346 347 7.881232 GGTCATAGGGATACAAATTAAATCGGA 59.119 37.037 0.00 0.00 39.74 4.55
347 348 7.663905 TGGTCATAGGGATACAAATTAAATCGG 59.336 37.037 0.00 0.00 39.74 4.18
348 349 8.615878 TGGTCATAGGGATACAAATTAAATCG 57.384 34.615 0.00 0.00 39.74 3.34
351 352 9.928618 TCAATGGTCATAGGGATACAAATTAAA 57.071 29.630 0.00 0.00 39.74 1.52
354 355 9.520515 GTATCAATGGTCATAGGGATACAAATT 57.479 33.333 16.59 0.00 39.74 1.82
355 356 8.894592 AGTATCAATGGTCATAGGGATACAAAT 58.105 33.333 20.04 7.87 39.74 2.32
356 357 8.275187 AGTATCAATGGTCATAGGGATACAAA 57.725 34.615 20.04 0.00 39.74 2.83
357 358 7.872061 AGTATCAATGGTCATAGGGATACAA 57.128 36.000 20.04 0.00 39.74 2.41
358 359 7.872061 AAGTATCAATGGTCATAGGGATACA 57.128 36.000 20.04 0.00 39.74 2.29
361 362 9.790297 AGTATAAGTATCAATGGTCATAGGGAT 57.210 33.333 0.00 0.00 0.00 3.85
362 363 9.615660 AAGTATAAGTATCAATGGTCATAGGGA 57.384 33.333 0.00 0.00 0.00 4.20
392 393 9.689501 TTTTCCCGAGAATATGTAACCTTTATT 57.310 29.630 0.00 0.00 0.00 1.40
393 394 9.689501 TTTTTCCCGAGAATATGTAACCTTTAT 57.310 29.630 0.00 0.00 0.00 1.40
424 425 4.406972 TCATGAGGAGAAGTGGTTGGATAG 59.593 45.833 0.00 0.00 0.00 2.08
427 428 2.619931 TCATGAGGAGAAGTGGTTGGA 58.380 47.619 0.00 0.00 0.00 3.53
442 443 1.937223 AGTTCGCAACGTGTTTCATGA 59.063 42.857 0.00 0.00 36.23 3.07
487 488 0.179056 CAGTCCGGGGCATCGTAATT 60.179 55.000 0.00 0.00 0.00 1.40
502 503 0.387239 GGTTGGCGAAATGTGCAGTC 60.387 55.000 0.00 0.00 0.00 3.51
662 664 0.250513 GAGGCGAGGAATGGTGTTCT 59.749 55.000 0.00 0.00 0.00 3.01
683 685 3.073650 AGGAAAGGAATCTGCTTGTGTCT 59.926 43.478 0.00 0.00 0.00 3.41
724 726 0.720027 GATGGAGATGCGATGCGATG 59.280 55.000 0.00 0.00 0.00 3.84
725 727 0.390866 GGATGGAGATGCGATGCGAT 60.391 55.000 0.00 0.00 0.00 4.58
726 728 1.005748 GGATGGAGATGCGATGCGA 60.006 57.895 0.00 0.00 0.00 5.10
727 729 1.301165 TGGATGGAGATGCGATGCG 60.301 57.895 0.00 0.00 0.00 4.73
728 730 1.233285 GGTGGATGGAGATGCGATGC 61.233 60.000 0.00 0.00 0.00 3.91
731 733 1.522092 GTGGTGGATGGAGATGCGA 59.478 57.895 0.00 0.00 0.00 5.10
778 784 2.747855 CACGCAAGGAAGGAGGGC 60.748 66.667 0.00 0.00 46.39 5.19
874 880 3.946558 ACGAGACGGAATAGAGTTAGCTT 59.053 43.478 0.00 0.00 0.00 3.74
879 885 1.816835 TGCACGAGACGGAATAGAGTT 59.183 47.619 0.00 0.00 0.00 3.01
953 959 1.385206 ATGCTTCCTCCTCCCTCCC 60.385 63.158 0.00 0.00 0.00 4.30
959 965 2.092753 TGTGATTGGATGCTTCCTCCTC 60.093 50.000 18.67 12.55 43.07 3.71
1795 1802 6.590292 TCTTTCGAGAGTCCACATAAATTCAC 59.410 38.462 2.53 0.00 0.00 3.18
1865 1872 8.359060 AGCTAGAAAATATTTAGAAGTGCGAG 57.641 34.615 0.01 0.00 0.00 5.03
2109 2116 9.121517 CAGTGTCATAAAGAAAATTAGCACAAG 57.878 33.333 0.00 0.00 0.00 3.16
2196 2203 5.574830 GGCTCGCATAGTCAAATCTATACAG 59.425 44.000 0.00 0.00 0.00 2.74
2413 2420 4.261363 GCTGTTTATCTAGAATTGGCTGCC 60.261 45.833 12.87 12.87 0.00 4.85
2417 2424 4.260784 CGTGGCTGTTTATCTAGAATTGGC 60.261 45.833 0.00 0.00 0.00 4.52
2424 2431 3.521560 TCAAGCGTGGCTGTTTATCTAG 58.478 45.455 0.00 0.00 39.62 2.43
2449 2456 3.179048 ACTGTTTGCGAGCAACTTTTTC 58.821 40.909 10.30 0.00 35.46 2.29
2591 2598 3.715618 TTGCGCACTTCACGTATTAAG 57.284 42.857 11.12 0.00 0.00 1.85
2664 2671 7.103641 AGCTATTTGTAAGATCAAGAAACGGA 58.896 34.615 0.00 0.00 0.00 4.69
2666 2673 7.064609 TGGAGCTATTTGTAAGATCAAGAAACG 59.935 37.037 0.00 0.00 30.94 3.60
2667 2674 8.268850 TGGAGCTATTTGTAAGATCAAGAAAC 57.731 34.615 0.00 0.00 30.94 2.78
2718 2726 6.446781 AGAGTATGAACCTCGTCGATAAAA 57.553 37.500 0.00 0.00 34.08 1.52
2748 2756 2.238144 TCCTCTTCCAGCAATTCCAGAG 59.762 50.000 0.00 0.00 0.00 3.35
2945 2953 6.549433 TCACAGGTATTTATAAAGGGACGT 57.451 37.500 3.94 0.00 0.00 4.34
3460 3552 1.395045 CCATCCGAGCTCTGCTACCA 61.395 60.000 12.85 0.00 39.88 3.25
3659 3751 0.732571 CAGTGCCTGAAACGTGTTGT 59.267 50.000 0.00 0.00 32.44 3.32
3922 4014 0.676466 TGCCGGACCACAATGATGTC 60.676 55.000 5.05 0.00 37.82 3.06
3937 4029 1.522355 CTGCTGGACTGGTATGCCG 60.522 63.158 0.00 0.00 37.67 5.69
4258 4350 3.194116 AGCCGACTCCTGTTATACGAAAA 59.806 43.478 0.00 0.00 0.00 2.29
4265 4357 2.679082 ACCATAGCCGACTCCTGTTAT 58.321 47.619 0.00 0.00 0.00 1.89
4518 4610 8.410912 ACTGCAGAAAGTAATATCACGTATGTA 58.589 33.333 23.35 0.00 0.00 2.29
4625 4717 6.595716 CCCTTCTAGGACAAAGTCATAACAAG 59.404 42.308 0.00 2.46 37.67 3.16
4663 4755 1.200948 TGCACATCAGACTGAGTCTCG 59.799 52.381 13.05 8.75 41.37 4.04
4689 4781 6.858478 GCCTAAGAAAAGTTCACACAAGATTC 59.142 38.462 0.00 0.00 0.00 2.52
4817 4909 6.093495 TGGAAATCGATGTAGAACCAACATTC 59.907 38.462 0.00 0.00 37.69 2.67
4907 4999 7.010160 TCAACTCTTCCATTACCAAGGATTTT 58.990 34.615 0.00 0.00 33.10 1.82
5140 5232 0.893447 AGGGAGTACGTAGGTGCAAC 59.107 55.000 6.43 0.00 0.00 4.17
5254 5366 6.399669 GCGATACGTAGCATGATTTCGTAAAT 60.400 38.462 19.10 9.50 39.67 1.40
5298 5410 3.181503 CCAGCATCTGAAAAATGTCGGAG 60.182 47.826 0.00 0.00 36.36 4.63
5352 5464 4.760047 AGCGCCAACAGCCTACCG 62.760 66.667 2.29 0.00 38.78 4.02
5463 5575 1.416401 TCCTCAACCAACTGAGTGACC 59.584 52.381 0.00 0.00 41.15 4.02
5613 5725 0.385390 CAAGCCTTCAAAGCGTTGGT 59.615 50.000 12.54 0.00 35.29 3.67
5642 5754 7.166970 CGAATAACGCAGTAAGCTTCACTATAA 59.833 37.037 0.00 0.00 45.00 0.98
5651 5763 2.182825 CGACGAATAACGCAGTAAGCT 58.817 47.619 0.00 0.00 45.00 3.74
5668 5780 3.186409 TCAGCAAGTTTATCAACAGCGAC 59.814 43.478 0.00 0.00 39.73 5.19
5687 5799 2.033407 CCGCTATGCACGAAAGAATCAG 60.033 50.000 0.00 0.00 0.00 2.90
5857 5969 8.865001 CAACAATACTAGAAAAGTAGCAGACTC 58.135 37.037 0.00 0.00 43.90 3.36
5913 6025 2.205074 AGCAACGTGAGAAACTGACAG 58.795 47.619 0.00 0.00 0.00 3.51
6403 6586 3.181465 TGGTGGTTGTTGTTGTTGTTGTT 60.181 39.130 0.00 0.00 0.00 2.83
6404 6587 2.365617 TGGTGGTTGTTGTTGTTGTTGT 59.634 40.909 0.00 0.00 0.00 3.32
6405 6588 2.734079 GTGGTGGTTGTTGTTGTTGTTG 59.266 45.455 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.