Multiple sequence alignment - TraesCS2D01G288900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G288900 chr2D 100.000 9443 0 0 1 9443 370624511 370633953 0.000000e+00 17439
1 TraesCS2D01G288900 chr2D 81.304 230 30 9 7190 7410 630297338 630297113 3.510000e-39 174
2 TraesCS2D01G288900 chr2D 92.135 89 6 1 5764 5852 98261226 98261313 3.580000e-24 124
3 TraesCS2D01G288900 chr2A 93.674 4047 151 43 5121 9098 501571465 501575475 0.000000e+00 5958
4 TraesCS2D01G288900 chr2A 89.701 2175 81 53 740 2852 501566950 501569043 0.000000e+00 2643
5 TraesCS2D01G288900 chr2A 89.200 1500 52 32 2897 4314 501569116 501570587 0.000000e+00 1772
6 TraesCS2D01G288900 chr2A 87.871 808 38 25 4351 5136 501570676 501571445 0.000000e+00 894
7 TraesCS2D01G288900 chr2A 93.720 207 12 1 509 714 501566747 501566953 9.210000e-80 309
8 TraesCS2D01G288900 chr2B 91.095 2830 131 52 513 3270 439879703 439882483 0.000000e+00 3718
9 TraesCS2D01G288900 chr2B 95.983 1444 43 9 7026 8465 439885654 439887086 0.000000e+00 2331
10 TraesCS2D01G288900 chr2B 92.659 1512 58 24 4089 5582 439882784 439884260 0.000000e+00 2128
11 TraesCS2D01G288900 chr2B 92.699 1178 42 20 5852 6999 439884499 439885662 0.000000e+00 1659
12 TraesCS2D01G288900 chr2B 96.729 856 18 4 8450 9301 439887104 439887953 0.000000e+00 1417
13 TraesCS2D01G288900 chr2B 87.313 268 16 9 3737 4001 439882479 439882731 3.340000e-74 291
14 TraesCS2D01G288900 chr2B 93.651 189 7 4 5576 5761 439884307 439884493 2.600000e-70 278
15 TraesCS2D01G288900 chr2B 89.744 156 13 1 9288 9443 439890784 439890936 7.480000e-46 196
16 TraesCS2D01G288900 chr2B 84.472 161 16 7 263 416 656018154 656018312 5.910000e-32 150
17 TraesCS2D01G288900 chr2B 88.430 121 4 7 5659 5770 477564044 477563925 4.600000e-28 137
18 TraesCS2D01G288900 chr3B 88.387 155 13 3 268 418 819026921 819027074 2.090000e-41 182
19 TraesCS2D01G288900 chr3B 87.417 151 15 3 268 416 735658657 735658805 4.530000e-38 171
20 TraesCS2D01G288900 chr6B 87.838 148 14 4 271 415 361289736 361289590 4.530000e-38 171
21 TraesCS2D01G288900 chr1D 87.838 148 12 6 273 416 184301371 184301516 1.630000e-37 169
22 TraesCS2D01G288900 chr1D 78.846 260 41 8 7179 7428 96116477 96116732 7.590000e-36 163
23 TraesCS2D01G288900 chr7D 86.897 145 17 2 268 412 108834132 108834274 2.730000e-35 161
24 TraesCS2D01G288900 chr7D 86.093 151 11 6 269 416 276998057 276997914 4.570000e-33 154
25 TraesCS2D01G288900 chr7D 90.323 93 3 2 5764 5856 485090879 485090965 5.990000e-22 117
26 TraesCS2D01G288900 chr7D 88.776 98 5 2 5756 5853 519264637 519264546 2.150000e-21 115
27 TraesCS2D01G288900 chr7B 86.275 153 15 4 268 415 628358833 628358682 2.730000e-35 161
28 TraesCS2D01G288900 chr4D 86.093 151 18 3 268 416 478272436 478272585 9.820000e-35 159
29 TraesCS2D01G288900 chr4D 91.209 91 2 2 5764 5854 479997661 479997577 1.670000e-22 119
30 TraesCS2D01G288900 chr6D 84.783 138 19 1 7283 7418 395366742 395366605 4.600000e-28 137
31 TraesCS2D01G288900 chr5A 94.444 90 4 1 5764 5853 214954372 214954460 4.600000e-28 137
32 TraesCS2D01G288900 chr4A 92.308 91 6 1 5764 5853 462830522 462830432 2.770000e-25 128
33 TraesCS2D01G288900 chr3D 91.111 90 2 2 5764 5853 107462718 107462635 5.990000e-22 117
34 TraesCS2D01G288900 chr5D 87.379 103 6 3 5752 5853 66745490 66745394 2.790000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G288900 chr2D 370624511 370633953 9442 False 17439.00 17439 100.000000 1 9443 1 chr2D.!!$F2 9442
1 TraesCS2D01G288900 chr2A 501566747 501575475 8728 False 2315.20 5958 90.833200 509 9098 5 chr2A.!!$F1 8589
2 TraesCS2D01G288900 chr2B 439879703 439890936 11233 False 1502.25 3718 92.484125 513 9443 8 chr2B.!!$F2 8930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 477 0.036388 GCTACTGCTAGCACCACCAA 60.036 55.000 14.93 0.00 44.45 3.67 F
1075 1093 0.105453 GGAGGGAGGGAGAGCACATA 60.105 60.000 0.00 0.00 0.00 2.29 F
2717 2816 0.234884 GCACAGTTCGTTTTCGGAGG 59.765 55.000 0.00 0.00 44.25 4.30 F
3237 3380 0.179073 CGCAAGAATCGATCACCCCT 60.179 55.000 0.00 0.00 43.02 4.79 F
4046 4224 0.310543 CTCTAGCTAGCTGACCTGCG 59.689 60.000 27.68 6.72 38.13 5.18 F
4345 4575 0.313987 TGTCGTGTCGTGCTTCAGAT 59.686 50.000 0.00 0.00 0.00 2.90 F
4998 5277 0.095935 TACGCTGAGAGTTACGTCGC 59.904 55.000 0.00 0.00 39.78 5.19 F
5361 5680 0.723414 ATGCGCTCGATTTCACTGTG 59.277 50.000 9.73 0.17 0.00 3.66 F
5460 5779 0.906282 TCTGATGCCAGAGCCAGACA 60.906 55.000 0.00 0.00 44.01 3.41 F
6322 6697 1.001378 GAAAGGCAACACTTCGTGCAT 60.001 47.619 0.00 0.00 36.98 3.96 F
6596 6994 1.865788 GATTTGTGGCGCCTGCTTGA 61.866 55.000 29.70 9.13 42.25 3.02 F
7480 7892 1.831106 AGTTCTGTGATGGCCATCGTA 59.169 47.619 34.70 25.81 40.63 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 1963 1.202855 ACTGAGACAACTTGGCATGCT 60.203 47.619 18.92 0.00 0.00 3.79 R
2753 2852 0.039165 GGCAGACCCTTTCAAAAGCG 60.039 55.000 0.00 0.00 34.69 4.68 R
4301 4506 0.185175 AAGGGCAAGGAAAAGGTCGT 59.815 50.000 0.00 0.00 0.00 4.34 R
4318 4523 0.300491 CACGACACGACACACCAAAG 59.700 55.000 0.00 0.00 0.00 2.77 R
4998 5277 0.322008 GAGGCCACAACTCAGAAGGG 60.322 60.000 5.01 0.00 35.09 3.95 R
5154 5468 0.591170 AGAAACCAATGGACAACGCG 59.409 50.000 6.16 3.53 0.00 6.01 R
6261 6636 1.694018 GCACTCTCTGCACGCATCAG 61.694 60.000 0.00 0.00 46.29 2.90 R
7112 7520 1.226379 GTCAATCATGCCAACCGCG 60.226 57.895 0.00 0.00 42.08 6.46 R
7140 7548 2.094803 CGTAGAGATGCTGGATGCCTAG 60.095 54.545 0.00 0.00 42.00 3.02 R
7480 7892 0.250513 GGAGACCGATCAAGCAGGTT 59.749 55.000 0.00 0.00 38.57 3.50 R
8099 8523 0.593128 GCAAACACAGAGCCGAATGT 59.407 50.000 0.00 0.00 0.00 2.71 R
9333 12683 2.416972 CCTTCTAGCCTACACGAACACC 60.417 54.545 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 8.830580 TGTTTGAAAACATTGTGAAGTTTTTCA 58.169 25.926 4.52 7.61 45.09 2.69
74 75 9.657121 GTTTGAAAACATTGTGAAGTTTTTCAA 57.343 25.926 15.63 15.63 45.09 2.69
85 86 9.657121 TTGTGAAGTTTTTCAAATTTTGTTCAC 57.343 25.926 21.90 21.90 44.49 3.18
86 87 9.050601 TGTGAAGTTTTTCAAATTTTGTTCACT 57.949 25.926 25.31 15.23 44.49 3.41
87 88 9.877137 GTGAAGTTTTTCAAATTTTGTTCACTT 57.123 25.926 21.64 17.69 44.49 3.16
191 192 9.991388 ACATTTTGTTCATGTTTTCAGAAATTG 57.009 25.926 0.00 0.00 30.22 2.32
192 193 9.991388 CATTTTGTTCATGTTTTCAGAAATTGT 57.009 25.926 0.00 0.00 0.00 2.71
195 196 8.768957 TTGTTCATGTTTTCAGAAATTGTTCA 57.231 26.923 0.00 0.00 36.09 3.18
196 197 8.945481 TGTTCATGTTTTCAGAAATTGTTCAT 57.055 26.923 0.00 0.00 36.09 2.57
197 198 8.819015 TGTTCATGTTTTCAGAAATTGTTCATG 58.181 29.630 0.00 7.51 36.09 3.07
198 199 8.819974 GTTCATGTTTTCAGAAATTGTTCATGT 58.180 29.630 16.17 0.00 36.09 3.21
199 200 8.945481 TCATGTTTTCAGAAATTGTTCATGTT 57.055 26.923 16.17 0.00 36.09 2.71
200 201 9.381033 TCATGTTTTCAGAAATTGTTCATGTTT 57.619 25.926 16.17 0.00 36.09 2.83
201 202 9.991388 CATGTTTTCAGAAATTGTTCATGTTTT 57.009 25.926 0.00 0.00 36.09 2.43
215 216 9.604626 TTGTTCATGTTTTTCAAATTTGTTCAC 57.395 25.926 17.47 10.71 0.00 3.18
216 217 8.777413 TGTTCATGTTTTTCAAATTTGTTCACA 58.223 25.926 17.47 15.17 0.00 3.58
217 218 9.604626 GTTCATGTTTTTCAAATTTGTTCACAA 57.395 25.926 17.47 1.81 0.00 3.33
230 231 9.488124 AAATTTGTTCACAATTCAAAATGTTCG 57.512 25.926 0.00 0.00 35.55 3.95
231 232 6.580963 TTGTTCACAATTCAAAATGTTCGG 57.419 33.333 0.00 0.00 0.00 4.30
232 233 5.895928 TGTTCACAATTCAAAATGTTCGGA 58.104 33.333 0.00 0.00 0.00 4.55
233 234 6.333416 TGTTCACAATTCAAAATGTTCGGAA 58.667 32.000 0.00 0.00 0.00 4.30
234 235 6.813649 TGTTCACAATTCAAAATGTTCGGAAA 59.186 30.769 0.00 0.00 0.00 3.13
235 236 6.820470 TCACAATTCAAAATGTTCGGAAAC 57.180 33.333 0.00 0.00 35.85 2.78
236 237 5.751028 TCACAATTCAAAATGTTCGGAAACC 59.249 36.000 0.00 0.00 34.28 3.27
237 238 5.050431 CACAATTCAAAATGTTCGGAAACCC 60.050 40.000 0.00 0.00 34.28 4.11
238 239 4.946478 ATTCAAAATGTTCGGAAACCCA 57.054 36.364 0.00 0.00 34.28 4.51
239 240 4.737855 TTCAAAATGTTCGGAAACCCAA 57.262 36.364 0.00 0.00 34.28 4.12
240 241 4.737855 TCAAAATGTTCGGAAACCCAAA 57.262 36.364 0.00 0.00 34.28 3.28
241 242 5.086104 TCAAAATGTTCGGAAACCCAAAA 57.914 34.783 0.00 0.00 34.28 2.44
242 243 5.488341 TCAAAATGTTCGGAAACCCAAAAA 58.512 33.333 0.00 0.00 34.28 1.94
314 315 3.970828 CGTTTCGCCAATTTTTCATCC 57.029 42.857 0.00 0.00 0.00 3.51
315 316 3.574614 CGTTTCGCCAATTTTTCATCCT 58.425 40.909 0.00 0.00 0.00 3.24
316 317 3.608073 CGTTTCGCCAATTTTTCATCCTC 59.392 43.478 0.00 0.00 0.00 3.71
317 318 4.615912 CGTTTCGCCAATTTTTCATCCTCT 60.616 41.667 0.00 0.00 0.00 3.69
318 319 4.701956 TTCGCCAATTTTTCATCCTCTC 57.298 40.909 0.00 0.00 0.00 3.20
319 320 3.684908 TCGCCAATTTTTCATCCTCTCA 58.315 40.909 0.00 0.00 0.00 3.27
320 321 4.078537 TCGCCAATTTTTCATCCTCTCAA 58.921 39.130 0.00 0.00 0.00 3.02
321 322 4.082787 TCGCCAATTTTTCATCCTCTCAAC 60.083 41.667 0.00 0.00 0.00 3.18
322 323 4.168760 GCCAATTTTTCATCCTCTCAACG 58.831 43.478 0.00 0.00 0.00 4.10
323 324 4.168760 CCAATTTTTCATCCTCTCAACGC 58.831 43.478 0.00 0.00 0.00 4.84
324 325 4.168760 CAATTTTTCATCCTCTCAACGCC 58.831 43.478 0.00 0.00 0.00 5.68
325 326 1.438651 TTTTCATCCTCTCAACGCCG 58.561 50.000 0.00 0.00 0.00 6.46
326 327 0.391130 TTTCATCCTCTCAACGCCGG 60.391 55.000 0.00 0.00 0.00 6.13
327 328 1.254975 TTCATCCTCTCAACGCCGGA 61.255 55.000 5.05 0.00 0.00 5.14
328 329 1.218047 CATCCTCTCAACGCCGGAA 59.782 57.895 5.05 0.00 0.00 4.30
329 330 0.391130 CATCCTCTCAACGCCGGAAA 60.391 55.000 5.05 0.00 0.00 3.13
330 331 0.108138 ATCCTCTCAACGCCGGAAAG 60.108 55.000 5.05 0.00 0.00 2.62
331 332 1.183030 TCCTCTCAACGCCGGAAAGA 61.183 55.000 5.05 0.00 0.00 2.52
332 333 0.108138 CCTCTCAACGCCGGAAAGAT 60.108 55.000 5.05 0.00 0.00 2.40
333 334 1.676014 CCTCTCAACGCCGGAAAGATT 60.676 52.381 5.05 0.00 0.00 2.40
334 335 1.394917 CTCTCAACGCCGGAAAGATTG 59.605 52.381 5.05 1.04 0.00 2.67
335 336 1.156736 CTCAACGCCGGAAAGATTGT 58.843 50.000 5.05 0.00 0.00 2.71
336 337 1.535462 CTCAACGCCGGAAAGATTGTT 59.465 47.619 5.05 0.00 0.00 2.83
337 338 1.950909 TCAACGCCGGAAAGATTGTTT 59.049 42.857 5.05 0.00 0.00 2.83
338 339 2.359531 TCAACGCCGGAAAGATTGTTTT 59.640 40.909 5.05 0.00 0.00 2.43
339 340 3.120041 CAACGCCGGAAAGATTGTTTTT 58.880 40.909 5.05 0.00 0.00 1.94
340 341 3.007979 ACGCCGGAAAGATTGTTTTTC 57.992 42.857 5.05 0.00 34.55 2.29
341 342 2.287970 ACGCCGGAAAGATTGTTTTTCC 60.288 45.455 5.05 6.67 46.49 3.13
348 349 6.753107 GGAAAGATTGTTTTTCCTATCCGA 57.247 37.500 9.00 0.00 46.46 4.55
349 350 6.786207 GGAAAGATTGTTTTTCCTATCCGAG 58.214 40.000 9.00 0.00 46.46 4.63
350 351 6.183360 GGAAAGATTGTTTTTCCTATCCGAGG 60.183 42.308 9.00 0.00 46.46 4.63
351 352 5.437191 AGATTGTTTTTCCTATCCGAGGT 57.563 39.130 0.00 0.00 46.76 3.85
352 353 5.186198 AGATTGTTTTTCCTATCCGAGGTG 58.814 41.667 0.00 0.00 46.76 4.00
353 354 3.343941 TGTTTTTCCTATCCGAGGTGG 57.656 47.619 0.00 0.00 46.76 4.61
354 355 2.640826 TGTTTTTCCTATCCGAGGTGGT 59.359 45.455 0.00 0.00 46.76 4.16
355 356 3.839490 TGTTTTTCCTATCCGAGGTGGTA 59.161 43.478 0.00 0.00 46.76 3.25
356 357 4.186926 GTTTTTCCTATCCGAGGTGGTAC 58.813 47.826 0.00 0.00 46.76 3.34
357 358 3.393426 TTTCCTATCCGAGGTGGTACT 57.607 47.619 0.00 0.00 46.76 2.73
358 359 4.524802 TTTCCTATCCGAGGTGGTACTA 57.475 45.455 0.00 0.00 46.76 1.82
359 360 4.524802 TTCCTATCCGAGGTGGTACTAA 57.475 45.455 0.00 0.00 46.76 2.24
360 361 4.524802 TCCTATCCGAGGTGGTACTAAA 57.475 45.455 0.00 0.00 46.76 1.85
361 362 5.070823 TCCTATCCGAGGTGGTACTAAAT 57.929 43.478 0.00 0.00 46.76 1.40
362 363 5.461327 TCCTATCCGAGGTGGTACTAAATT 58.539 41.667 0.00 0.00 46.76 1.82
363 364 5.537674 TCCTATCCGAGGTGGTACTAAATTC 59.462 44.000 0.00 0.00 46.76 2.17
364 365 5.539193 CCTATCCGAGGTGGTACTAAATTCT 59.461 44.000 0.00 0.00 40.98 2.40
365 366 5.952347 ATCCGAGGTGGTACTAAATTCTT 57.048 39.130 0.00 0.00 39.52 2.52
366 367 5.080969 TCCGAGGTGGTACTAAATTCTTG 57.919 43.478 0.00 0.00 39.52 3.02
367 368 4.529377 TCCGAGGTGGTACTAAATTCTTGT 59.471 41.667 0.00 0.00 39.52 3.16
368 369 4.630069 CCGAGGTGGTACTAAATTCTTGTG 59.370 45.833 0.00 0.00 0.00 3.33
369 370 5.235516 CGAGGTGGTACTAAATTCTTGTGT 58.764 41.667 0.00 0.00 0.00 3.72
370 371 5.120208 CGAGGTGGTACTAAATTCTTGTGTG 59.880 44.000 0.00 0.00 0.00 3.82
371 372 5.937111 AGGTGGTACTAAATTCTTGTGTGT 58.063 37.500 0.00 0.00 0.00 3.72
372 373 6.362248 AGGTGGTACTAAATTCTTGTGTGTT 58.638 36.000 0.00 0.00 0.00 3.32
373 374 6.485648 AGGTGGTACTAAATTCTTGTGTGTTC 59.514 38.462 0.00 0.00 0.00 3.18
374 375 6.360329 GTGGTACTAAATTCTTGTGTGTTCG 58.640 40.000 0.00 0.00 0.00 3.95
375 376 6.018507 GTGGTACTAAATTCTTGTGTGTTCGT 60.019 38.462 0.00 0.00 0.00 3.85
376 377 6.201425 TGGTACTAAATTCTTGTGTGTTCGTC 59.799 38.462 0.00 0.00 0.00 4.20
377 378 6.423001 GGTACTAAATTCTTGTGTGTTCGTCT 59.577 38.462 0.00 0.00 0.00 4.18
378 379 6.287107 ACTAAATTCTTGTGTGTTCGTCTG 57.713 37.500 0.00 0.00 0.00 3.51
379 380 3.609103 AATTCTTGTGTGTTCGTCTGC 57.391 42.857 0.00 0.00 0.00 4.26
380 381 2.309528 TTCTTGTGTGTTCGTCTGCT 57.690 45.000 0.00 0.00 0.00 4.24
381 382 3.446310 TTCTTGTGTGTTCGTCTGCTA 57.554 42.857 0.00 0.00 0.00 3.49
382 383 3.446310 TCTTGTGTGTTCGTCTGCTAA 57.554 42.857 0.00 0.00 0.00 3.09
383 384 3.787785 TCTTGTGTGTTCGTCTGCTAAA 58.212 40.909 0.00 0.00 0.00 1.85
384 385 4.185394 TCTTGTGTGTTCGTCTGCTAAAA 58.815 39.130 0.00 0.00 0.00 1.52
385 386 4.632251 TCTTGTGTGTTCGTCTGCTAAAAA 59.368 37.500 0.00 0.00 0.00 1.94
408 409 7.673810 AAAAGTTTTTCCAGAATTTCGTACG 57.326 32.000 9.53 9.53 0.00 3.67
409 410 5.996669 AGTTTTTCCAGAATTTCGTACGT 57.003 34.783 16.05 0.00 0.00 3.57
410 411 5.744490 AGTTTTTCCAGAATTTCGTACGTG 58.256 37.500 16.05 4.70 0.00 4.49
411 412 4.735662 TTTTCCAGAATTTCGTACGTGG 57.264 40.909 16.05 14.15 0.00 4.94
412 413 3.663995 TTCCAGAATTTCGTACGTGGA 57.336 42.857 16.45 16.45 32.17 4.02
413 414 2.950433 TCCAGAATTTCGTACGTGGAC 58.050 47.619 16.45 6.55 0.00 4.02
414 415 1.997606 CCAGAATTTCGTACGTGGACC 59.002 52.381 16.05 3.58 0.00 4.46
415 416 1.652124 CAGAATTTCGTACGTGGACCG 59.348 52.381 16.05 0.00 44.03 4.79
416 417 1.541147 AGAATTTCGTACGTGGACCGA 59.459 47.619 16.05 0.00 40.70 4.69
417 418 1.916000 GAATTTCGTACGTGGACCGAG 59.084 52.381 16.05 0.00 40.70 4.63
418 419 0.171903 ATTTCGTACGTGGACCGAGG 59.828 55.000 16.05 0.00 40.70 4.63
419 420 1.172180 TTTCGTACGTGGACCGAGGT 61.172 55.000 16.05 0.00 40.70 3.85
420 421 1.855213 TTCGTACGTGGACCGAGGTG 61.855 60.000 16.05 0.00 40.70 4.00
421 422 2.570181 GTACGTGGACCGAGGTGG 59.430 66.667 0.00 0.00 46.41 4.61
430 431 2.890371 CCGAGGTGGTACTTCCCG 59.110 66.667 0.00 2.59 34.77 5.14
431 432 1.679977 CCGAGGTGGTACTTCCCGA 60.680 63.158 13.91 0.00 34.77 5.14
432 433 1.041447 CCGAGGTGGTACTTCCCGAT 61.041 60.000 13.91 0.00 34.77 4.18
433 434 0.384669 CGAGGTGGTACTTCCCGATC 59.615 60.000 0.00 0.00 34.77 3.69
434 435 0.751452 GAGGTGGTACTTCCCGATCC 59.249 60.000 0.00 0.00 34.77 3.36
435 436 1.041447 AGGTGGTACTTCCCGATCCG 61.041 60.000 0.00 0.00 34.77 4.18
436 437 1.039233 GGTGGTACTTCCCGATCCGA 61.039 60.000 0.00 0.00 34.77 4.55
437 438 0.101939 GTGGTACTTCCCGATCCGAC 59.898 60.000 0.00 0.00 34.77 4.79
438 439 1.358046 GGTACTTCCCGATCCGACG 59.642 63.158 0.00 0.00 0.00 5.12
439 440 1.298938 GTACTTCCCGATCCGACGC 60.299 63.158 0.00 0.00 0.00 5.19
440 441 1.452651 TACTTCCCGATCCGACGCT 60.453 57.895 0.00 0.00 0.00 5.07
441 442 1.033746 TACTTCCCGATCCGACGCTT 61.034 55.000 0.00 0.00 0.00 4.68
442 443 1.589196 CTTCCCGATCCGACGCTTC 60.589 63.158 0.00 0.00 0.00 3.86
443 444 2.005960 CTTCCCGATCCGACGCTTCT 62.006 60.000 0.00 0.00 0.00 2.85
444 445 2.001361 TTCCCGATCCGACGCTTCTC 62.001 60.000 0.00 0.00 0.00 2.87
445 446 2.482333 CCCGATCCGACGCTTCTCT 61.482 63.158 0.00 0.00 0.00 3.10
446 447 1.009449 CCGATCCGACGCTTCTCTC 60.009 63.158 0.00 0.00 0.00 3.20
447 448 1.368255 CGATCCGACGCTTCTCTCG 60.368 63.158 0.00 0.00 0.00 4.04
448 449 1.763200 CGATCCGACGCTTCTCTCGA 61.763 60.000 0.00 0.00 31.24 4.04
449 450 0.316360 GATCCGACGCTTCTCTCGAC 60.316 60.000 0.00 0.00 31.24 4.20
450 451 2.037913 ATCCGACGCTTCTCTCGACG 62.038 60.000 0.00 0.00 42.58 5.12
451 452 2.940007 CGACGCTTCTCTCGACGC 60.940 66.667 0.00 0.00 38.09 5.19
455 456 3.812019 GCTTCTCTCGACGCGGGA 61.812 66.667 12.47 6.50 34.26 5.14
456 457 2.100603 CTTCTCTCGACGCGGGAC 59.899 66.667 12.47 0.00 31.17 4.46
469 470 3.207354 GGGACGCTACTGCTAGCA 58.793 61.111 18.22 18.22 45.22 3.49
470 471 1.227002 GGGACGCTACTGCTAGCAC 60.227 63.158 14.93 2.78 45.22 4.40
471 472 1.227002 GGACGCTACTGCTAGCACC 60.227 63.158 14.93 7.99 45.22 5.01
472 473 1.511305 GACGCTACTGCTAGCACCA 59.489 57.895 14.93 3.12 45.22 4.17
473 474 0.802607 GACGCTACTGCTAGCACCAC 60.803 60.000 14.93 2.72 45.22 4.16
474 475 1.519455 CGCTACTGCTAGCACCACC 60.519 63.158 14.93 1.97 45.22 4.61
475 476 1.596934 GCTACTGCTAGCACCACCA 59.403 57.895 14.93 0.00 44.45 4.17
476 477 0.036388 GCTACTGCTAGCACCACCAA 60.036 55.000 14.93 0.00 44.45 3.67
477 478 1.726853 CTACTGCTAGCACCACCAAC 58.273 55.000 14.93 0.00 0.00 3.77
478 479 1.001974 CTACTGCTAGCACCACCAACA 59.998 52.381 14.93 0.00 0.00 3.33
479 480 0.535102 ACTGCTAGCACCACCAACAC 60.535 55.000 14.93 0.00 0.00 3.32
480 481 0.250467 CTGCTAGCACCACCAACACT 60.250 55.000 14.93 0.00 0.00 3.55
481 482 1.001974 CTGCTAGCACCACCAACACTA 59.998 52.381 14.93 0.00 0.00 2.74
482 483 1.418264 TGCTAGCACCACCAACACTAA 59.582 47.619 14.93 0.00 0.00 2.24
483 484 1.804748 GCTAGCACCACCAACACTAAC 59.195 52.381 10.63 0.00 0.00 2.34
484 485 2.066262 CTAGCACCACCAACACTAACG 58.934 52.381 0.00 0.00 0.00 3.18
485 486 0.466543 AGCACCACCAACACTAACGA 59.533 50.000 0.00 0.00 0.00 3.85
486 487 1.134340 AGCACCACCAACACTAACGAA 60.134 47.619 0.00 0.00 0.00 3.85
487 488 1.003223 GCACCACCAACACTAACGAAC 60.003 52.381 0.00 0.00 0.00 3.95
488 489 2.557317 CACCACCAACACTAACGAACT 58.443 47.619 0.00 0.00 0.00 3.01
489 490 2.940410 CACCACCAACACTAACGAACTT 59.060 45.455 0.00 0.00 0.00 2.66
490 491 3.001939 CACCACCAACACTAACGAACTTC 59.998 47.826 0.00 0.00 0.00 3.01
491 492 3.199677 CCACCAACACTAACGAACTTCA 58.800 45.455 0.00 0.00 0.00 3.02
492 493 3.001939 CCACCAACACTAACGAACTTCAC 59.998 47.826 0.00 0.00 0.00 3.18
493 494 3.001939 CACCAACACTAACGAACTTCACC 59.998 47.826 0.00 0.00 0.00 4.02
494 495 3.118519 ACCAACACTAACGAACTTCACCT 60.119 43.478 0.00 0.00 0.00 4.00
495 496 3.493503 CCAACACTAACGAACTTCACCTC 59.506 47.826 0.00 0.00 0.00 3.85
496 497 4.116961 CAACACTAACGAACTTCACCTCA 58.883 43.478 0.00 0.00 0.00 3.86
497 498 4.395959 ACACTAACGAACTTCACCTCAA 57.604 40.909 0.00 0.00 0.00 3.02
498 499 4.761975 ACACTAACGAACTTCACCTCAAA 58.238 39.130 0.00 0.00 0.00 2.69
499 500 5.180271 ACACTAACGAACTTCACCTCAAAA 58.820 37.500 0.00 0.00 0.00 2.44
500 501 5.644636 ACACTAACGAACTTCACCTCAAAAA 59.355 36.000 0.00 0.00 0.00 1.94
571 574 1.289276 CACCCAGTTTGCAGCAAAAC 58.711 50.000 22.26 15.49 39.80 2.43
716 719 1.000283 CGAAAGCATCTCCTATCCGCT 60.000 52.381 0.00 0.00 33.45 5.52
717 720 2.229062 CGAAAGCATCTCCTATCCGCTA 59.771 50.000 0.00 0.00 31.36 4.26
739 744 3.826282 CCCTGCTTTGAGAGGGGA 58.174 61.111 0.00 0.00 44.88 4.81
771 776 1.703411 CACACCACTTCCACCCAAAT 58.297 50.000 0.00 0.00 0.00 2.32
931 936 2.724358 GCCACGCCAAAACGAACG 60.724 61.111 0.00 0.00 36.70 3.95
932 937 3.015677 CCACGCCAAAACGAACGA 58.984 55.556 0.14 0.00 36.70 3.85
953 959 1.945394 TCTCCTATCACGTAACGGAGC 59.055 52.381 14.18 0.00 40.76 4.70
1007 1017 2.656069 CCCGTCCACCACCGATCTT 61.656 63.158 0.00 0.00 0.00 2.40
1010 1020 1.745489 GTCCACCACCGATCTTGCC 60.745 63.158 0.00 0.00 0.00 4.52
1068 1086 3.430497 CCGAGGGAGGGAGGGAGA 61.430 72.222 0.00 0.00 0.00 3.71
1069 1087 2.197324 CGAGGGAGGGAGGGAGAG 59.803 72.222 0.00 0.00 0.00 3.20
1072 1090 2.766229 GGGAGGGAGGGAGAGCAC 60.766 72.222 0.00 0.00 0.00 4.40
1073 1091 2.039624 GGAGGGAGGGAGAGCACA 59.960 66.667 0.00 0.00 0.00 4.57
1074 1092 1.383803 GGAGGGAGGGAGAGCACAT 60.384 63.158 0.00 0.00 0.00 3.21
1075 1093 0.105453 GGAGGGAGGGAGAGCACATA 60.105 60.000 0.00 0.00 0.00 2.29
1076 1094 1.044611 GAGGGAGGGAGAGCACATAC 58.955 60.000 0.00 0.00 0.00 2.39
1077 1095 0.639392 AGGGAGGGAGAGCACATACT 59.361 55.000 0.00 0.00 0.00 2.12
1078 1096 1.044611 GGGAGGGAGAGCACATACTC 58.955 60.000 0.00 0.00 36.91 2.59
1149 1170 1.724234 GAGAGAGATAGCACGCGCG 60.724 63.158 30.96 30.96 45.49 6.86
1150 1171 2.107151 GAGAGAGATAGCACGCGCGA 62.107 60.000 39.36 15.38 45.49 5.87
1151 1172 1.724234 GAGAGATAGCACGCGCGAG 60.724 63.158 39.36 30.95 45.49 5.03
1152 1173 2.727647 GAGATAGCACGCGCGAGG 60.728 66.667 39.36 27.67 45.49 4.63
1153 1174 3.182472 GAGATAGCACGCGCGAGGA 62.182 63.158 39.36 18.61 45.49 3.71
1154 1175 2.727647 GATAGCACGCGCGAGGAG 60.728 66.667 39.36 22.72 45.49 3.69
1155 1176 4.271816 ATAGCACGCGCGAGGAGG 62.272 66.667 39.36 19.88 45.49 4.30
1488 1516 4.843101 GTCTCGCTCGACGTCTTT 57.157 55.556 14.70 0.00 44.19 2.52
1532 1563 1.304052 CCGCCAACAAATCCCTCCA 60.304 57.895 0.00 0.00 0.00 3.86
1541 1572 1.200020 CAAATCCCTCCACGCTTTCAC 59.800 52.381 0.00 0.00 0.00 3.18
1675 1707 2.128347 CGATCGATTTCGCAGCGC 60.128 61.111 10.26 0.00 39.60 5.92
1677 1709 2.202932 ATCGATTTCGCAGCGCCT 60.203 55.556 10.87 0.00 39.60 5.52
1678 1710 0.939577 GATCGATTTCGCAGCGCCTA 60.940 55.000 10.87 0.00 39.60 3.93
1772 1832 6.461648 CCTTCTTCTCTTTTCCCTTTTTGTCC 60.462 42.308 0.00 0.00 0.00 4.02
2006 2085 4.281182 CCGACTGCCTATGTTTCCTACTAT 59.719 45.833 0.00 0.00 0.00 2.12
2008 2087 6.015688 CCGACTGCCTATGTTTCCTACTATAA 60.016 42.308 0.00 0.00 0.00 0.98
2009 2088 6.862090 CGACTGCCTATGTTTCCTACTATAAC 59.138 42.308 0.00 0.00 0.00 1.89
2015 2094 7.015389 GCCTATGTTTCCTACTATAACCTCTGT 59.985 40.741 0.00 0.00 0.00 3.41
2391 2485 7.067008 ACCTGAATTTGTTGGATACGGAAATAG 59.933 37.037 0.00 0.00 42.51 1.73
2442 2538 4.141801 ACCGCTCCATGTTATGTTAGCTAA 60.142 41.667 0.86 0.86 36.06 3.09
2444 2540 5.050490 CGCTCCATGTTATGTTAGCTAAGT 58.950 41.667 6.38 1.38 36.06 2.24
2528 2627 0.248565 ACAGATGCAGCTGACACGAT 59.751 50.000 36.72 11.95 39.20 3.73
2529 2628 0.651031 CAGATGCAGCTGACACGATG 59.349 55.000 27.60 10.50 38.14 3.84
2584 2683 8.579850 AAAATTTCCAATAGTAGAGATGCACA 57.420 30.769 0.00 0.00 0.00 4.57
2591 2690 7.507277 TCCAATAGTAGAGATGCACAGTAGAAT 59.493 37.037 0.00 0.00 0.00 2.40
2717 2816 0.234884 GCACAGTTCGTTTTCGGAGG 59.765 55.000 0.00 0.00 44.25 4.30
2739 2838 4.275936 GGGATGCATATTTACAGTGTGGTC 59.724 45.833 5.88 0.00 0.00 4.02
2753 2852 1.202510 TGTGGTCATGCACCTTTTTGC 60.203 47.619 13.32 0.00 46.98 3.68
2780 2879 0.182775 AAAGGGTCTGCCGTTGTTCT 59.817 50.000 0.00 0.00 41.51 3.01
2797 2896 3.888930 TGTTCTGGTCAACTGGGATTTTC 59.111 43.478 0.00 0.00 0.00 2.29
2826 2925 5.107375 CCAATTCAGAAATTTGCAACTTCCG 60.107 40.000 14.13 6.97 32.69 4.30
2846 2945 4.088648 CCGTTTTAGTGAAAAGCATAGCG 58.911 43.478 0.00 0.00 35.21 4.26
2859 2958 7.220683 TGAAAAGCATAGCGCAATTTAAAGATC 59.779 33.333 11.47 0.00 46.13 2.75
2861 2960 3.908382 GCATAGCGCAATTTAAAGATCGG 59.092 43.478 11.47 0.00 41.79 4.18
2865 2964 3.438781 AGCGCAATTTAAAGATCGGTTGA 59.561 39.130 11.47 0.00 0.00 3.18
2867 2966 4.436852 GCGCAATTTAAAGATCGGTTGAGA 60.437 41.667 0.30 0.00 0.00 3.27
2876 2975 9.550406 TTTAAAGATCGGTTGAGACTAAAAAGA 57.450 29.630 0.00 0.00 0.00 2.52
2877 2976 9.550406 TTAAAGATCGGTTGAGACTAAAAAGAA 57.450 29.630 0.00 0.00 0.00 2.52
2911 3039 9.660180 ATCTCAGTGGACTTTTAAGAGTTAATC 57.340 33.333 0.00 0.00 0.00 1.75
3058 3187 2.299582 TGGAAATTGTTGCATCTGTGGG 59.700 45.455 0.00 0.00 28.87 4.61
3084 3213 1.065928 GGATCACGTCTGGTAGCGG 59.934 63.158 0.00 0.00 0.00 5.52
3237 3380 0.179073 CGCAAGAATCGATCACCCCT 60.179 55.000 0.00 0.00 43.02 4.79
3329 3472 4.389576 GCAACGGCTTGGTCGCAG 62.390 66.667 0.00 0.00 32.11 5.18
3330 3473 4.389576 CAACGGCTTGGTCGCAGC 62.390 66.667 0.00 0.00 32.11 5.25
3331 3474 4.927782 AACGGCTTGGTCGCAGCA 62.928 61.111 0.00 0.00 39.21 4.41
3410 3553 2.798283 CACCGTCGCTGTAGAAAAGAAA 59.202 45.455 0.00 0.00 0.00 2.52
3413 3556 3.457596 CGTCGCTGTAGAAAAGAAAACG 58.542 45.455 0.00 0.00 0.00 3.60
3653 3796 4.802051 GCTGATTCGCCAGGCCCA 62.802 66.667 5.63 0.00 34.82 5.36
3796 3965 4.708386 CCTGCGGCGGTGGGTTTA 62.708 66.667 9.78 0.00 0.00 2.01
3821 3990 2.875933 TCCTTTTGAAGTTTCGCGTCAT 59.124 40.909 5.77 0.00 35.63 3.06
3823 3992 4.512198 TCCTTTTGAAGTTTCGCGTCATTA 59.488 37.500 5.77 0.00 35.63 1.90
3904 4073 2.744741 GAGAAGCAGGAGTAAACAAGGC 59.255 50.000 0.00 0.00 0.00 4.35
3960 4132 3.625897 CTGTGACGGTGCCAGGGA 61.626 66.667 0.00 0.00 0.00 4.20
3971 4143 1.149401 GCCAGGGACTAATGGGAGC 59.851 63.158 0.00 0.00 36.02 4.70
4001 4173 4.032900 CACCACACACGAGCAAGATAATAC 59.967 45.833 0.00 0.00 0.00 1.89
4002 4174 4.081642 ACCACACACGAGCAAGATAATACT 60.082 41.667 0.00 0.00 0.00 2.12
4003 4175 5.126545 ACCACACACGAGCAAGATAATACTA 59.873 40.000 0.00 0.00 0.00 1.82
4004 4176 6.183360 ACCACACACGAGCAAGATAATACTAT 60.183 38.462 0.00 0.00 0.00 2.12
4046 4224 0.310543 CTCTAGCTAGCTGACCTGCG 59.689 60.000 27.68 6.72 38.13 5.18
4047 4225 1.103987 TCTAGCTAGCTGACCTGCGG 61.104 60.000 27.68 6.92 38.13 5.69
4054 4232 2.029844 GCTGACCTGCGGAAGTGAC 61.030 63.158 0.00 0.00 0.00 3.67
4082 4260 2.645838 AAGCTGGAACTGAGAAGCAA 57.354 45.000 0.00 0.00 38.14 3.91
4083 4261 2.181954 AGCTGGAACTGAGAAGCAAG 57.818 50.000 0.00 0.00 38.14 4.01
4084 4262 0.520847 GCTGGAACTGAGAAGCAAGC 59.479 55.000 0.00 0.00 35.69 4.01
4086 4264 1.534595 CTGGAACTGAGAAGCAAGCAC 59.465 52.381 0.00 0.00 0.00 4.40
4087 4265 0.514691 GGAACTGAGAAGCAAGCACG 59.485 55.000 0.00 0.00 0.00 5.34
4088 4266 1.502231 GAACTGAGAAGCAAGCACGA 58.498 50.000 0.00 0.00 0.00 4.35
4089 4267 1.867233 GAACTGAGAAGCAAGCACGAA 59.133 47.619 0.00 0.00 0.00 3.85
4091 4269 2.288666 ACTGAGAAGCAAGCACGAAAA 58.711 42.857 0.00 0.00 0.00 2.29
4093 4271 1.603802 TGAGAAGCAAGCACGAAAAGG 59.396 47.619 0.00 0.00 0.00 3.11
4255 4455 1.153549 GGTCGAGTCATGGTCCTGC 60.154 63.158 0.00 0.00 0.00 4.85
4291 4496 4.559153 TGAAAGTTAGTAACACGGTAGCC 58.441 43.478 15.28 0.00 0.00 3.93
4301 4506 3.022557 ACACGGTAGCCTGATTAGGTA 57.977 47.619 5.29 0.00 46.41 3.08
4317 4522 1.162698 GGTACGACCTTTTCCTTGCC 58.837 55.000 0.00 0.00 34.73 4.52
4318 4523 1.162698 GTACGACCTTTTCCTTGCCC 58.837 55.000 0.00 0.00 0.00 5.36
4319 4524 1.061546 TACGACCTTTTCCTTGCCCT 58.938 50.000 0.00 0.00 0.00 5.19
4340 4570 1.881252 GGTGTGTCGTGTCGTGCTT 60.881 57.895 0.00 0.00 0.00 3.91
4345 4575 0.313987 TGTCGTGTCGTGCTTCAGAT 59.686 50.000 0.00 0.00 0.00 2.90
4361 4618 7.982354 GTGCTTCAGATACTGTAGGTAGAAAAT 59.018 37.037 0.00 0.00 31.11 1.82
4410 4667 7.275779 CGACATATATAGGTGGAATAACAGTGC 59.724 40.741 4.47 0.00 0.00 4.40
4608 4866 4.342862 TCCAAGTGATTGGCTAGCTATC 57.657 45.455 15.72 17.08 41.81 2.08
4646 4904 2.494870 AGCCATGCCTTGTCTGAAAATC 59.505 45.455 0.00 0.00 0.00 2.17
4648 4906 3.118884 GCCATGCCTTGTCTGAAAATCAT 60.119 43.478 0.00 0.00 0.00 2.45
4650 4908 4.430007 CATGCCTTGTCTGAAAATCATGG 58.570 43.478 11.88 5.00 0.00 3.66
4660 4918 2.827322 TGAAAATCATGGAGCAACCCAG 59.173 45.455 0.00 0.00 39.97 4.45
4661 4919 1.856629 AAATCATGGAGCAACCCAGG 58.143 50.000 0.00 0.00 39.97 4.45
4685 4943 1.247567 CCTGAATGCCGTCCACTTTT 58.752 50.000 0.00 0.00 0.00 2.27
4705 4963 3.637432 TTTGCAAGACCAAATACGCAAG 58.363 40.909 0.00 0.00 40.15 4.01
4798 5061 3.322541 TGTTCCGTCTACTCCAATTCACA 59.677 43.478 0.00 0.00 0.00 3.58
4831 5096 2.221055 ACGTGAAAGTGAAAGCTAAGCG 59.779 45.455 0.00 0.00 0.00 4.68
4834 5099 4.326278 CGTGAAAGTGAAAGCTAAGCGATA 59.674 41.667 0.00 0.00 0.00 2.92
4886 5151 9.587772 AGGAGTGTAATTTATATATAAGCTGCG 57.412 33.333 5.36 0.00 0.00 5.18
4914 5193 0.683504 AGGTTCCCGTCGCTGTAGAT 60.684 55.000 0.00 0.00 0.00 1.98
4915 5194 0.527817 GGTTCCCGTCGCTGTAGATG 60.528 60.000 0.00 0.00 0.00 2.90
4917 5196 2.279517 CCCGTCGCTGTAGATGGC 60.280 66.667 7.66 0.00 44.06 4.40
4937 5216 1.610673 TCTCCTCTCCACCCACTGC 60.611 63.158 0.00 0.00 0.00 4.40
4949 5228 4.764823 TCCACCCACTGCTTTTATTTACTG 59.235 41.667 0.00 0.00 0.00 2.74
4998 5277 0.095935 TACGCTGAGAGTTACGTCGC 59.904 55.000 0.00 0.00 39.78 5.19
5030 5309 1.476891 GTGGCCTCGTAGATGTCTCAA 59.523 52.381 3.32 0.00 33.89 3.02
5033 5312 2.625790 GGCCTCGTAGATGTCTCAAGAT 59.374 50.000 0.00 0.00 33.89 2.40
5092 5371 3.022287 CGTGCCACGAAACTTGCT 58.978 55.556 12.85 0.00 46.05 3.91
5154 5468 1.652563 GACCTTTGGTGTTGCCGTC 59.347 57.895 0.00 0.00 41.21 4.79
5200 5514 6.850234 ACGTATCTCCCTTCTCTTCCTAATA 58.150 40.000 0.00 0.00 0.00 0.98
5361 5680 0.723414 ATGCGCTCGATTTCACTGTG 59.277 50.000 9.73 0.17 0.00 3.66
5411 5730 8.446599 TTTCTTCCCGGATAGAATATTTGTTC 57.553 34.615 15.94 0.00 31.00 3.18
5460 5779 0.906282 TCTGATGCCAGAGCCAGACA 60.906 55.000 0.00 0.00 44.01 3.41
5595 5967 9.757227 AAAATTAGCACTAAAGTAACATTGCAA 57.243 25.926 0.00 0.00 32.24 4.08
5618 5990 7.519649 GCAAGAGTGGAAGCATATCTGATTAAC 60.520 40.741 0.00 0.00 29.36 2.01
5756 6131 6.588204 TGCTTTTAGACAGTGGAAAGTTCTA 58.412 36.000 0.00 0.00 32.97 2.10
5762 6137 6.099159 AGACAGTGGAAAGTTCTAACTACC 57.901 41.667 0.00 10.26 38.57 3.18
5768 6143 4.285260 TGGAAAGTTCTAACTACCACTCCC 59.715 45.833 13.87 0.00 39.17 4.30
5771 6146 3.710724 AGTTCTAACTACCACTCCCTCC 58.289 50.000 0.00 0.00 37.52 4.30
5794 6169 4.741676 CGTCCCGTAATATAAGAGCGTTTT 59.258 41.667 0.00 0.00 0.00 2.43
5795 6170 5.232838 CGTCCCGTAATATAAGAGCGTTTTT 59.767 40.000 0.00 0.00 0.00 1.94
5796 6171 6.416514 GTCCCGTAATATAAGAGCGTTTTTG 58.583 40.000 0.00 0.00 0.00 2.44
5797 6172 6.256321 GTCCCGTAATATAAGAGCGTTTTTGA 59.744 38.462 0.00 0.00 0.00 2.69
5798 6173 6.256321 TCCCGTAATATAAGAGCGTTTTTGAC 59.744 38.462 0.00 0.00 0.00 3.18
5799 6174 6.036300 CCCGTAATATAAGAGCGTTTTTGACA 59.964 38.462 0.00 0.00 0.00 3.58
5800 6175 6.898189 CCGTAATATAAGAGCGTTTTTGACAC 59.102 38.462 0.00 0.00 0.00 3.67
5839 6214 6.898189 GTGTCAAAAACGCTCTTATATTACGG 59.102 38.462 0.00 0.00 35.42 4.02
5843 6218 4.924305 AACGCTCTTATATTACGGGACA 57.076 40.909 0.00 0.00 0.00 4.02
5920 6295 7.179160 TGGAATGCACAGTACAGCTCTATATAT 59.821 37.037 0.00 0.00 0.00 0.86
5921 6296 8.687242 GGAATGCACAGTACAGCTCTATATATA 58.313 37.037 0.00 0.00 0.00 0.86
5977 6352 7.439157 TCTAATCTGTTGACAAAATGAGTGG 57.561 36.000 0.00 0.00 0.00 4.00
6253 6628 2.557924 CTGTTGCTTCCACCTAATTGCA 59.442 45.455 0.00 0.00 0.00 4.08
6261 6636 4.090761 TCCACCTAATTGCATCATCTCC 57.909 45.455 0.00 0.00 0.00 3.71
6322 6697 1.001378 GAAAGGCAACACTTCGTGCAT 60.001 47.619 0.00 0.00 36.98 3.96
6596 6994 1.865788 GATTTGTGGCGCCTGCTTGA 61.866 55.000 29.70 9.13 42.25 3.02
6734 7132 6.831353 TGTGAGTTCAAACCTTTAAGAATCCA 59.169 34.615 0.00 0.00 0.00 3.41
6735 7133 7.340743 TGTGAGTTCAAACCTTTAAGAATCCAA 59.659 33.333 0.00 0.00 0.00 3.53
6736 7134 8.194769 GTGAGTTCAAACCTTTAAGAATCCAAA 58.805 33.333 0.00 0.00 0.00 3.28
6772 7176 8.258708 CACTGATCCACATGACATATAGATGAT 58.741 37.037 3.93 0.00 36.48 2.45
6931 7335 2.507886 TCCTGGTTCCACAGAGAAAACA 59.492 45.455 0.00 0.00 40.97 2.83
7017 7425 7.117241 TGACAGTAGAACTAATCGCAAAAAG 57.883 36.000 0.00 0.00 0.00 2.27
7019 7427 7.439955 TGACAGTAGAACTAATCGCAAAAAGAA 59.560 33.333 0.00 0.00 0.00 2.52
7020 7428 7.797819 ACAGTAGAACTAATCGCAAAAAGAAG 58.202 34.615 0.00 0.00 0.00 2.85
7021 7429 7.656137 ACAGTAGAACTAATCGCAAAAAGAAGA 59.344 33.333 0.00 0.00 0.00 2.87
7022 7430 8.495949 CAGTAGAACTAATCGCAAAAAGAAGAA 58.504 33.333 0.00 0.00 0.00 2.52
7023 7431 8.713271 AGTAGAACTAATCGCAAAAAGAAGAAG 58.287 33.333 0.00 0.00 0.00 2.85
7024 7432 7.730364 AGAACTAATCGCAAAAAGAAGAAGA 57.270 32.000 0.00 0.00 0.00 2.87
7031 7439 5.990408 TCGCAAAAAGAAGAAGAAGATGAC 58.010 37.500 0.00 0.00 0.00 3.06
7055 7463 5.164954 AGTAGAACTGATGAGCTTCGAAAC 58.835 41.667 0.00 0.00 0.00 2.78
7112 7520 4.666253 TCTGGGCCAGGCTGCAAC 62.666 66.667 32.23 0.00 31.51 4.17
7140 7548 2.195922 GCATGATTGACCGCAAAATCC 58.804 47.619 0.00 0.00 37.59 3.01
7480 7892 1.831106 AGTTCTGTGATGGCCATCGTA 59.169 47.619 34.70 25.81 40.63 3.43
7767 8179 3.181497 GCAATGACATTGACCGCACTATT 60.181 43.478 28.37 0.00 42.83 1.73
7840 8258 4.994471 CTCTGTGCACCGCTGGCA 62.994 66.667 15.69 0.00 39.32 4.92
7908 8326 2.834505 TACCGCCGCCCGACTATT 60.835 61.111 0.00 0.00 40.02 1.73
8074 8493 6.818142 TCAGTCGAGCTTTCAATGATGATAAA 59.182 34.615 0.00 0.00 34.96 1.40
8191 8615 1.304217 GGGAGACACGGGAGACAGA 60.304 63.158 0.00 0.00 0.00 3.41
8192 8616 0.684805 GGGAGACACGGGAGACAGAT 60.685 60.000 0.00 0.00 0.00 2.90
8362 8790 7.690256 TCTCTGAGTGCTCTATGTATATGGTA 58.310 38.462 4.32 0.00 0.00 3.25
8363 8791 8.332487 TCTCTGAGTGCTCTATGTATATGGTAT 58.668 37.037 4.32 0.00 0.00 2.73
8364 8792 9.620259 CTCTGAGTGCTCTATGTATATGGTATA 57.380 37.037 0.00 0.00 0.00 1.47
8413 8842 9.362539 ACAACAATGCAATTCAAGAGAAATATC 57.637 29.630 0.00 0.00 37.29 1.63
8523 8989 5.872070 GGATATTTCGACAGGGAGATGATTC 59.128 44.000 0.00 0.00 0.00 2.52
8535 9001 0.533755 GATGATTCGGGGGACTGCAG 60.534 60.000 13.48 13.48 36.33 4.41
8702 9202 7.161404 TGAAACATATAGTTGAACACTCAGCT 58.839 34.615 0.00 0.00 44.47 4.24
8891 9391 5.466728 GGAATTTCTTTTTCTTGCCAAGGAC 59.533 40.000 4.30 0.00 0.00 3.85
8998 9499 1.799933 ACATGGCCAAGACCCAAAAA 58.200 45.000 16.33 0.00 35.67 1.94
9267 9773 0.742505 TCATGGTCCGTAGTTAGCCG 59.257 55.000 0.00 0.00 0.00 5.52
9305 12655 7.774134 TGTTAGTGTTCGCTACTCCAATTATA 58.226 34.615 0.00 0.00 0.00 0.98
9307 12657 9.090692 GTTAGTGTTCGCTACTCCAATTATAAA 57.909 33.333 0.00 0.00 0.00 1.40
9333 12683 5.880054 AAATAGACCATGTTCAAACGAGG 57.120 39.130 0.00 2.87 0.00 4.63
9348 12698 1.874345 CGAGGGTGTTCGTGTAGGCT 61.874 60.000 0.00 0.00 35.91 4.58
9354 12704 2.416972 GGTGTTCGTGTAGGCTAGAAGG 60.417 54.545 4.88 0.00 0.00 3.46
9386 12736 5.034152 TGAAAGCAAGTTGTTTTCGACATC 58.966 37.500 28.73 13.83 46.25 3.06
9388 12738 2.948979 AGCAAGTTGTTTTCGACATCCA 59.051 40.909 4.48 0.00 38.26 3.41
9400 12750 1.474330 GACATCCACCAAATGACCCC 58.526 55.000 0.00 0.00 0.00 4.95
9403 12753 2.255406 CATCCACCAAATGACCCCAAA 58.745 47.619 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 8.527810 TGAACAATTTTTCCTAAAACTGTGTCT 58.472 29.630 2.00 0.00 41.34 3.41
21 22 8.696410 TGAACAATTTTTCCTAAAACTGTGTC 57.304 30.769 2.00 0.00 41.34 3.67
22 23 9.097257 CATGAACAATTTTTCCTAAAACTGTGT 57.903 29.630 2.00 0.00 41.34 3.72
23 24 9.097257 ACATGAACAATTTTTCCTAAAACTGTG 57.903 29.630 0.00 0.00 41.34 3.66
24 25 9.665719 AACATGAACAATTTTTCCTAAAACTGT 57.334 25.926 0.00 0.00 43.30 3.55
32 33 9.007901 TGTTTTCAAACATGAACAATTTTTCCT 57.992 25.926 0.00 0.00 43.45 3.36
48 49 9.657121 TTGAAAAACTTCACAATGTTTTCAAAC 57.343 25.926 15.01 0.00 43.04 2.93
59 60 9.657121 GTGAACAAAATTTGAAAAACTTCACAA 57.343 25.926 21.86 0.00 38.24 3.33
60 61 9.050601 AGTGAACAAAATTTGAAAAACTTCACA 57.949 25.926 25.39 2.87 39.56 3.58
61 62 9.877137 AAGTGAACAAAATTTGAAAAACTTCAC 57.123 25.926 20.41 20.41 38.44 3.18
165 166 9.991388 CAATTTCTGAAAACATGAACAAAATGT 57.009 25.926 6.95 0.00 39.95 2.71
166 167 9.991388 ACAATTTCTGAAAACATGAACAAAATG 57.009 25.926 6.95 0.00 0.00 2.32
169 170 9.212641 TGAACAATTTCTGAAAACATGAACAAA 57.787 25.926 6.95 0.00 32.36 2.83
170 171 8.768957 TGAACAATTTCTGAAAACATGAACAA 57.231 26.923 6.95 0.00 32.36 2.83
171 172 8.819015 CATGAACAATTTCTGAAAACATGAACA 58.181 29.630 19.73 16.43 35.95 3.18
172 173 8.819974 ACATGAACAATTTCTGAAAACATGAAC 58.180 29.630 25.04 16.48 36.92 3.18
173 174 8.945481 ACATGAACAATTTCTGAAAACATGAA 57.055 26.923 25.04 9.63 36.92 2.57
174 175 8.945481 AACATGAACAATTTCTGAAAACATGA 57.055 26.923 25.04 8.16 36.92 3.07
175 176 9.991388 AAAACATGAACAATTTCTGAAAACATG 57.009 25.926 21.12 21.12 38.59 3.21
189 190 9.604626 GTGAACAAATTTGAAAAACATGAACAA 57.395 25.926 24.64 0.00 0.00 2.83
190 191 8.777413 TGTGAACAAATTTGAAAAACATGAACA 58.223 25.926 24.64 10.12 0.00 3.18
191 192 9.604626 TTGTGAACAAATTTGAAAAACATGAAC 57.395 25.926 24.64 8.05 32.11 3.18
204 205 9.488124 CGAACATTTTGAATTGTGAACAAATTT 57.512 25.926 0.00 0.00 39.55 1.82
205 206 8.121708 CCGAACATTTTGAATTGTGAACAAATT 58.878 29.630 0.00 0.00 39.55 1.82
206 207 7.493971 TCCGAACATTTTGAATTGTGAACAAAT 59.506 29.630 0.00 0.00 39.55 2.32
207 208 6.813649 TCCGAACATTTTGAATTGTGAACAAA 59.186 30.769 0.00 0.00 39.55 2.83
208 209 6.333416 TCCGAACATTTTGAATTGTGAACAA 58.667 32.000 0.00 0.00 40.51 2.83
209 210 5.895928 TCCGAACATTTTGAATTGTGAACA 58.104 33.333 0.00 0.00 0.00 3.18
210 211 6.820470 TTCCGAACATTTTGAATTGTGAAC 57.180 33.333 0.00 0.00 0.00 3.18
211 212 6.256757 GGTTTCCGAACATTTTGAATTGTGAA 59.743 34.615 0.00 0.00 37.51 3.18
212 213 5.751028 GGTTTCCGAACATTTTGAATTGTGA 59.249 36.000 0.00 0.00 37.51 3.58
213 214 5.050431 GGGTTTCCGAACATTTTGAATTGTG 60.050 40.000 0.00 0.00 37.51 3.33
214 215 5.053811 GGGTTTCCGAACATTTTGAATTGT 58.946 37.500 0.00 0.00 37.51 2.71
215 216 5.053145 TGGGTTTCCGAACATTTTGAATTG 58.947 37.500 0.00 0.00 37.51 2.32
216 217 5.283457 TGGGTTTCCGAACATTTTGAATT 57.717 34.783 0.00 0.00 37.51 2.17
217 218 4.946478 TGGGTTTCCGAACATTTTGAAT 57.054 36.364 0.00 0.00 37.51 2.57
218 219 4.737855 TTGGGTTTCCGAACATTTTGAA 57.262 36.364 0.00 0.00 37.51 2.69
219 220 4.737855 TTTGGGTTTCCGAACATTTTGA 57.262 36.364 0.00 0.00 37.51 2.69
220 221 5.803020 TTTTTGGGTTTCCGAACATTTTG 57.197 34.783 0.00 0.00 36.20 2.44
269 270 9.077674 CGCACCTTGCTTTATTAGTAGATATAG 57.922 37.037 0.00 0.00 42.25 1.31
270 271 8.582437 ACGCACCTTGCTTTATTAGTAGATATA 58.418 33.333 0.00 0.00 42.25 0.86
271 272 7.442656 ACGCACCTTGCTTTATTAGTAGATAT 58.557 34.615 0.00 0.00 42.25 1.63
272 273 6.812998 ACGCACCTTGCTTTATTAGTAGATA 58.187 36.000 0.00 0.00 42.25 1.98
273 274 5.671493 ACGCACCTTGCTTTATTAGTAGAT 58.329 37.500 0.00 0.00 42.25 1.98
274 275 5.080969 ACGCACCTTGCTTTATTAGTAGA 57.919 39.130 0.00 0.00 42.25 2.59
275 276 5.796350 AACGCACCTTGCTTTATTAGTAG 57.204 39.130 0.00 0.00 42.25 2.57
276 277 5.163933 CGAAACGCACCTTGCTTTATTAGTA 60.164 40.000 0.00 0.00 42.25 1.82
277 278 4.378046 CGAAACGCACCTTGCTTTATTAGT 60.378 41.667 0.00 0.00 42.25 2.24
278 279 4.088648 CGAAACGCACCTTGCTTTATTAG 58.911 43.478 0.00 0.00 42.25 1.73
279 280 4.073169 CGAAACGCACCTTGCTTTATTA 57.927 40.909 0.00 0.00 42.25 0.98
280 281 2.928694 CGAAACGCACCTTGCTTTATT 58.071 42.857 0.00 0.00 42.25 1.40
281 282 2.611974 CGAAACGCACCTTGCTTTAT 57.388 45.000 0.00 0.00 42.25 1.40
294 295 3.574614 AGGATGAAAAATTGGCGAAACG 58.425 40.909 0.00 0.00 0.00 3.60
295 296 4.809673 AGAGGATGAAAAATTGGCGAAAC 58.190 39.130 0.00 0.00 0.00 2.78
296 297 4.522405 TGAGAGGATGAAAAATTGGCGAAA 59.478 37.500 0.00 0.00 0.00 3.46
297 298 4.078537 TGAGAGGATGAAAAATTGGCGAA 58.921 39.130 0.00 0.00 0.00 4.70
298 299 3.684908 TGAGAGGATGAAAAATTGGCGA 58.315 40.909 0.00 0.00 0.00 5.54
299 300 4.168760 GTTGAGAGGATGAAAAATTGGCG 58.831 43.478 0.00 0.00 0.00 5.69
300 301 4.168760 CGTTGAGAGGATGAAAAATTGGC 58.831 43.478 0.00 0.00 0.00 4.52
301 302 4.168760 GCGTTGAGAGGATGAAAAATTGG 58.831 43.478 0.00 0.00 0.00 3.16
302 303 4.168760 GGCGTTGAGAGGATGAAAAATTG 58.831 43.478 0.00 0.00 0.00 2.32
303 304 3.119849 CGGCGTTGAGAGGATGAAAAATT 60.120 43.478 0.00 0.00 0.00 1.82
304 305 2.420022 CGGCGTTGAGAGGATGAAAAAT 59.580 45.455 0.00 0.00 0.00 1.82
305 306 1.804151 CGGCGTTGAGAGGATGAAAAA 59.196 47.619 0.00 0.00 0.00 1.94
306 307 1.438651 CGGCGTTGAGAGGATGAAAA 58.561 50.000 0.00 0.00 0.00 2.29
307 308 0.391130 CCGGCGTTGAGAGGATGAAA 60.391 55.000 6.01 0.00 0.00 2.69
308 309 1.218047 CCGGCGTTGAGAGGATGAA 59.782 57.895 6.01 0.00 0.00 2.57
309 310 1.254975 TTCCGGCGTTGAGAGGATGA 61.255 55.000 6.01 0.00 32.19 2.92
310 311 0.391130 TTTCCGGCGTTGAGAGGATG 60.391 55.000 6.01 0.00 32.19 3.51
311 312 0.108138 CTTTCCGGCGTTGAGAGGAT 60.108 55.000 6.01 0.00 32.19 3.24
312 313 1.183030 TCTTTCCGGCGTTGAGAGGA 61.183 55.000 6.01 0.00 0.00 3.71
313 314 0.108138 ATCTTTCCGGCGTTGAGAGG 60.108 55.000 6.01 0.00 0.00 3.69
314 315 1.394917 CAATCTTTCCGGCGTTGAGAG 59.605 52.381 6.01 1.54 0.00 3.20
315 316 1.270625 ACAATCTTTCCGGCGTTGAGA 60.271 47.619 6.01 5.97 0.00 3.27
316 317 1.156736 ACAATCTTTCCGGCGTTGAG 58.843 50.000 6.01 0.00 0.00 3.02
317 318 1.600023 AACAATCTTTCCGGCGTTGA 58.400 45.000 6.01 0.00 0.00 3.18
318 319 2.415697 AAACAATCTTTCCGGCGTTG 57.584 45.000 6.01 5.05 0.00 4.10
319 320 3.377439 GAAAAACAATCTTTCCGGCGTT 58.623 40.909 6.01 0.00 0.00 4.84
320 321 2.287970 GGAAAAACAATCTTTCCGGCGT 60.288 45.455 6.01 0.00 41.74 5.68
321 322 2.324860 GGAAAAACAATCTTTCCGGCG 58.675 47.619 0.00 0.00 41.74 6.46
341 342 6.651975 AGAATTTAGTACCACCTCGGATAG 57.348 41.667 0.00 0.00 38.63 2.08
342 343 6.381994 ACAAGAATTTAGTACCACCTCGGATA 59.618 38.462 0.00 0.00 38.63 2.59
343 344 5.189145 ACAAGAATTTAGTACCACCTCGGAT 59.811 40.000 0.00 0.00 38.63 4.18
344 345 4.529377 ACAAGAATTTAGTACCACCTCGGA 59.471 41.667 0.00 0.00 38.63 4.55
345 346 4.630069 CACAAGAATTTAGTACCACCTCGG 59.370 45.833 0.00 0.00 42.50 4.63
346 347 5.120208 CACACAAGAATTTAGTACCACCTCG 59.880 44.000 0.00 0.00 0.00 4.63
347 348 5.995897 ACACACAAGAATTTAGTACCACCTC 59.004 40.000 0.00 0.00 0.00 3.85
348 349 5.937111 ACACACAAGAATTTAGTACCACCT 58.063 37.500 0.00 0.00 0.00 4.00
349 350 6.565247 CGAACACACAAGAATTTAGTACCACC 60.565 42.308 0.00 0.00 0.00 4.61
350 351 6.018507 ACGAACACACAAGAATTTAGTACCAC 60.019 38.462 0.00 0.00 0.00 4.16
351 352 6.050432 ACGAACACACAAGAATTTAGTACCA 58.950 36.000 0.00 0.00 0.00 3.25
352 353 6.423001 AGACGAACACACAAGAATTTAGTACC 59.577 38.462 0.00 0.00 0.00 3.34
353 354 7.281484 CAGACGAACACACAAGAATTTAGTAC 58.719 38.462 0.00 0.00 0.00 2.73
354 355 6.073980 GCAGACGAACACACAAGAATTTAGTA 60.074 38.462 0.00 0.00 0.00 1.82
355 356 5.277345 GCAGACGAACACACAAGAATTTAGT 60.277 40.000 0.00 0.00 0.00 2.24
356 357 5.050091 AGCAGACGAACACACAAGAATTTAG 60.050 40.000 0.00 0.00 0.00 1.85
357 358 4.814234 AGCAGACGAACACACAAGAATTTA 59.186 37.500 0.00 0.00 0.00 1.40
358 359 3.627577 AGCAGACGAACACACAAGAATTT 59.372 39.130 0.00 0.00 0.00 1.82
359 360 3.206150 AGCAGACGAACACACAAGAATT 58.794 40.909 0.00 0.00 0.00 2.17
360 361 2.838736 AGCAGACGAACACACAAGAAT 58.161 42.857 0.00 0.00 0.00 2.40
361 362 2.309528 AGCAGACGAACACACAAGAA 57.690 45.000 0.00 0.00 0.00 2.52
362 363 3.446310 TTAGCAGACGAACACACAAGA 57.554 42.857 0.00 0.00 0.00 3.02
363 364 4.530094 TTTTAGCAGACGAACACACAAG 57.470 40.909 0.00 0.00 0.00 3.16
364 365 4.948608 TTTTTAGCAGACGAACACACAA 57.051 36.364 0.00 0.00 0.00 3.33
383 384 7.756272 ACGTACGAAATTCTGGAAAAACTTTTT 59.244 29.630 24.41 0.00 0.00 1.94
384 385 7.219344 CACGTACGAAATTCTGGAAAAACTTTT 59.781 33.333 24.41 0.00 0.00 2.27
385 386 6.689669 CACGTACGAAATTCTGGAAAAACTTT 59.310 34.615 24.41 0.00 0.00 2.66
386 387 6.196571 CACGTACGAAATTCTGGAAAAACTT 58.803 36.000 24.41 0.00 0.00 2.66
387 388 5.277634 CCACGTACGAAATTCTGGAAAAACT 60.278 40.000 24.41 0.00 0.00 2.66
388 389 4.907582 CCACGTACGAAATTCTGGAAAAAC 59.092 41.667 24.41 0.00 0.00 2.43
389 390 4.815308 TCCACGTACGAAATTCTGGAAAAA 59.185 37.500 24.41 0.00 0.00 1.94
390 391 4.211794 GTCCACGTACGAAATTCTGGAAAA 59.788 41.667 24.41 0.00 29.63 2.29
391 392 3.742369 GTCCACGTACGAAATTCTGGAAA 59.258 43.478 24.41 0.00 29.63 3.13
392 393 3.319755 GTCCACGTACGAAATTCTGGAA 58.680 45.455 24.41 5.46 29.63 3.53
393 394 2.353011 GGTCCACGTACGAAATTCTGGA 60.353 50.000 24.41 19.74 0.00 3.86
394 395 1.997606 GGTCCACGTACGAAATTCTGG 59.002 52.381 24.41 17.64 0.00 3.86
395 396 1.652124 CGGTCCACGTACGAAATTCTG 59.348 52.381 24.41 8.36 37.93 3.02
396 397 1.541147 TCGGTCCACGTACGAAATTCT 59.459 47.619 24.41 0.00 44.69 2.40
397 398 1.916000 CTCGGTCCACGTACGAAATTC 59.084 52.381 24.41 7.38 44.69 2.17
398 399 1.403249 CCTCGGTCCACGTACGAAATT 60.403 52.381 24.41 0.00 44.69 1.82
399 400 0.171903 CCTCGGTCCACGTACGAAAT 59.828 55.000 24.41 0.00 44.69 2.17
400 401 1.172180 ACCTCGGTCCACGTACGAAA 61.172 55.000 24.41 3.42 44.69 3.46
401 402 1.600636 ACCTCGGTCCACGTACGAA 60.601 57.895 24.41 3.82 44.69 3.85
402 403 2.032528 ACCTCGGTCCACGTACGA 59.967 61.111 24.41 0.00 44.69 3.43
403 404 2.177531 CACCTCGGTCCACGTACG 59.822 66.667 15.01 15.01 44.69 3.67
404 405 2.570181 CCACCTCGGTCCACGTAC 59.430 66.667 0.00 0.00 44.69 3.67
413 414 1.041447 ATCGGGAAGTACCACCTCGG 61.041 60.000 6.01 0.00 41.20 4.63
414 415 0.384669 GATCGGGAAGTACCACCTCG 59.615 60.000 6.01 7.73 41.20 4.63
415 416 0.751452 GGATCGGGAAGTACCACCTC 59.249 60.000 6.01 0.00 41.20 3.85
416 417 1.041447 CGGATCGGGAAGTACCACCT 61.041 60.000 6.01 0.00 41.20 4.00
417 418 1.039233 TCGGATCGGGAAGTACCACC 61.039 60.000 0.00 0.00 41.20 4.61
418 419 0.101939 GTCGGATCGGGAAGTACCAC 59.898 60.000 0.00 0.00 41.20 4.16
419 420 1.378882 CGTCGGATCGGGAAGTACCA 61.379 60.000 0.00 0.00 41.20 3.25
420 421 1.358046 CGTCGGATCGGGAAGTACC 59.642 63.158 0.00 0.00 38.08 3.34
421 422 1.298938 GCGTCGGATCGGGAAGTAC 60.299 63.158 0.00 0.00 0.00 2.73
422 423 1.033746 AAGCGTCGGATCGGGAAGTA 61.034 55.000 0.00 0.00 0.00 2.24
423 424 2.280823 GAAGCGTCGGATCGGGAAGT 62.281 60.000 0.00 0.00 0.00 3.01
424 425 1.589196 GAAGCGTCGGATCGGGAAG 60.589 63.158 0.00 0.00 0.00 3.46
425 426 2.001361 GAGAAGCGTCGGATCGGGAA 62.001 60.000 0.00 0.00 0.00 3.97
426 427 2.439701 AGAAGCGTCGGATCGGGA 60.440 61.111 0.00 0.00 0.00 5.14
427 428 2.026301 GAGAAGCGTCGGATCGGG 59.974 66.667 0.00 0.00 0.00 5.14
428 429 1.009449 GAGAGAAGCGTCGGATCGG 60.009 63.158 0.00 0.00 0.00 4.18
429 430 1.368255 CGAGAGAAGCGTCGGATCG 60.368 63.158 8.97 8.97 32.40 3.69
430 431 0.316360 GTCGAGAGAAGCGTCGGATC 60.316 60.000 0.00 0.00 45.01 3.36
431 432 1.722677 GTCGAGAGAAGCGTCGGAT 59.277 57.895 0.00 0.00 45.01 4.18
432 433 2.737688 CGTCGAGAGAAGCGTCGGA 61.738 63.158 0.00 0.00 45.01 4.55
433 434 2.276743 CGTCGAGAGAAGCGTCGG 60.277 66.667 0.00 0.00 45.01 4.79
439 440 2.100603 GTCCCGCGTCGAGAGAAG 59.899 66.667 4.92 0.00 45.01 2.85
440 441 3.796443 CGTCCCGCGTCGAGAGAA 61.796 66.667 4.92 0.00 45.01 2.87
458 459 1.001974 TGTTGGTGGTGCTAGCAGTAG 59.998 52.381 20.03 0.00 0.00 2.57
459 460 1.052617 TGTTGGTGGTGCTAGCAGTA 58.947 50.000 20.03 7.25 0.00 2.74
460 461 0.535102 GTGTTGGTGGTGCTAGCAGT 60.535 55.000 20.03 0.00 0.00 4.40
461 462 0.250467 AGTGTTGGTGGTGCTAGCAG 60.250 55.000 20.03 0.00 0.00 4.24
462 463 1.052617 TAGTGTTGGTGGTGCTAGCA 58.947 50.000 14.93 14.93 0.00 3.49
463 464 1.804748 GTTAGTGTTGGTGGTGCTAGC 59.195 52.381 8.10 8.10 0.00 3.42
464 465 2.066262 CGTTAGTGTTGGTGGTGCTAG 58.934 52.381 0.00 0.00 0.00 3.42
465 466 1.687660 TCGTTAGTGTTGGTGGTGCTA 59.312 47.619 0.00 0.00 0.00 3.49
466 467 0.466543 TCGTTAGTGTTGGTGGTGCT 59.533 50.000 0.00 0.00 0.00 4.40
467 468 1.003223 GTTCGTTAGTGTTGGTGGTGC 60.003 52.381 0.00 0.00 0.00 5.01
468 469 2.557317 AGTTCGTTAGTGTTGGTGGTG 58.443 47.619 0.00 0.00 0.00 4.17
469 470 2.994186 AGTTCGTTAGTGTTGGTGGT 57.006 45.000 0.00 0.00 0.00 4.16
470 471 3.001939 GTGAAGTTCGTTAGTGTTGGTGG 59.998 47.826 0.00 0.00 0.00 4.61
471 472 3.001939 GGTGAAGTTCGTTAGTGTTGGTG 59.998 47.826 0.00 0.00 0.00 4.17
472 473 3.118519 AGGTGAAGTTCGTTAGTGTTGGT 60.119 43.478 0.00 0.00 0.00 3.67
473 474 3.463944 AGGTGAAGTTCGTTAGTGTTGG 58.536 45.455 0.00 0.00 0.00 3.77
474 475 4.116961 TGAGGTGAAGTTCGTTAGTGTTG 58.883 43.478 0.00 0.00 0.00 3.33
475 476 4.395959 TGAGGTGAAGTTCGTTAGTGTT 57.604 40.909 0.00 0.00 0.00 3.32
476 477 4.395959 TTGAGGTGAAGTTCGTTAGTGT 57.604 40.909 0.00 0.00 0.00 3.55
477 478 5.728351 TTTTGAGGTGAAGTTCGTTAGTG 57.272 39.130 0.00 0.00 0.00 2.74
502 503 3.284617 AGTTCGTTAGTGCTGGGTTTTT 58.715 40.909 0.00 0.00 0.00 1.94
503 504 2.876550 GAGTTCGTTAGTGCTGGGTTTT 59.123 45.455 0.00 0.00 0.00 2.43
504 505 2.490991 GAGTTCGTTAGTGCTGGGTTT 58.509 47.619 0.00 0.00 0.00 3.27
505 506 1.270678 GGAGTTCGTTAGTGCTGGGTT 60.271 52.381 0.00 0.00 0.00 4.11
506 507 0.320697 GGAGTTCGTTAGTGCTGGGT 59.679 55.000 0.00 0.00 0.00 4.51
507 508 0.736325 CGGAGTTCGTTAGTGCTGGG 60.736 60.000 0.00 0.00 0.00 4.45
508 509 2.738147 CGGAGTTCGTTAGTGCTGG 58.262 57.895 0.00 0.00 0.00 4.85
571 574 5.299148 TGGTGGATCAAAATCAAGCTTTTG 58.701 37.500 0.00 0.00 44.02 2.44
683 686 3.254470 TGCTTTCGTATCGGAATGGAA 57.746 42.857 0.00 0.00 0.00 3.53
716 719 1.899437 CTCTCAAAGCAGGGCCCGTA 61.899 60.000 18.44 0.00 0.00 4.02
717 720 3.249189 TCTCAAAGCAGGGCCCGT 61.249 61.111 18.44 1.41 0.00 5.28
738 743 1.092348 GGTGTGGCCGTTAAAGGATC 58.908 55.000 12.01 3.20 0.00 3.36
739 744 0.402504 TGGTGTGGCCGTTAAAGGAT 59.597 50.000 12.01 0.00 41.21 3.24
929 934 2.547211 CCGTTACGTGATAGGAGATCGT 59.453 50.000 3.52 0.00 38.30 3.73
930 935 2.804527 TCCGTTACGTGATAGGAGATCG 59.195 50.000 3.52 0.00 0.00 3.69
953 959 4.685169 ATATACACGGACCGGTATTACG 57.315 45.455 23.96 13.10 32.72 3.18
1010 1020 4.745751 TTGTTACCTCGGCGCGGG 62.746 66.667 21.22 17.80 0.00 6.13
1018 1028 3.742369 TCGGATCGTTTTGTTGTTACCTC 59.258 43.478 0.00 0.00 0.00 3.85
1067 1085 4.141937 TGGTCTGTTATGGAGTATGTGCTC 60.142 45.833 0.00 0.00 34.89 4.26
1068 1086 3.774766 TGGTCTGTTATGGAGTATGTGCT 59.225 43.478 0.00 0.00 0.00 4.40
1069 1087 4.137116 TGGTCTGTTATGGAGTATGTGC 57.863 45.455 0.00 0.00 0.00 4.57
1072 1090 5.006153 TCGTTGGTCTGTTATGGAGTATG 57.994 43.478 0.00 0.00 0.00 2.39
1073 1091 5.661458 CTTCGTTGGTCTGTTATGGAGTAT 58.339 41.667 0.00 0.00 0.00 2.12
1074 1092 4.619863 GCTTCGTTGGTCTGTTATGGAGTA 60.620 45.833 0.00 0.00 0.00 2.59
1075 1093 3.864921 GCTTCGTTGGTCTGTTATGGAGT 60.865 47.826 0.00 0.00 0.00 3.85
1076 1094 2.673368 GCTTCGTTGGTCTGTTATGGAG 59.327 50.000 0.00 0.00 0.00 3.86
1077 1095 2.614481 GGCTTCGTTGGTCTGTTATGGA 60.614 50.000 0.00 0.00 0.00 3.41
1078 1096 1.737793 GGCTTCGTTGGTCTGTTATGG 59.262 52.381 0.00 0.00 0.00 2.74
1131 1152 1.724234 CGCGCGTGCTATCTCTCTC 60.724 63.158 24.19 0.00 39.65 3.20
1149 1170 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1150 1171 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1151 1172 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1152 1173 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1153 1174 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1154 1175 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1155 1176 1.152546 GCTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1156 1177 2.710826 GGCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
1157 1178 2.123033 GGCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
1532 1563 2.033492 CCGTAAAACGAAGTGAAAGCGT 60.033 45.455 0.15 0.00 45.00 5.07
1541 1572 3.671928 AGACGTGATTCCGTAAAACGAAG 59.328 43.478 0.00 0.00 46.05 3.79
1686 1741 1.715585 CATCTACGTTTGGCTGGCG 59.284 57.895 0.00 0.00 0.00 5.69
1772 1832 6.615088 TGGTTACTCTACTAGTTTAAGTGCG 58.385 40.000 0.00 0.00 39.80 5.34
1896 1963 1.202855 ACTGAGACAACTTGGCATGCT 60.203 47.619 18.92 0.00 0.00 3.79
1912 1979 4.191544 GTGGCAGCAATGACTATAACTGA 58.808 43.478 0.00 0.00 0.00 3.41
1913 1980 3.940852 TGTGGCAGCAATGACTATAACTG 59.059 43.478 0.00 0.00 0.00 3.16
2006 2085 9.629878 CTATCTTTAGAGGTAGAACAGAGGTTA 57.370 37.037 0.00 0.00 38.64 2.85
2008 2087 6.548251 GCTATCTTTAGAGGTAGAACAGAGGT 59.452 42.308 4.76 0.00 38.64 3.85
2009 2088 6.015772 GGCTATCTTTAGAGGTAGAACAGAGG 60.016 46.154 4.76 0.00 38.64 3.69
2015 2094 7.419057 CCACAATGGCTATCTTTAGAGGTAGAA 60.419 40.741 4.76 0.00 38.64 2.10
2239 2330 2.223377 GGGTATTTTCCTATTGCGAGCG 59.777 50.000 0.00 0.00 0.00 5.03
2326 2417 6.206243 AGCAACACAGGGTATATACTACTACG 59.794 42.308 12.54 8.07 0.00 3.51
2391 2485 6.128418 GCTAGAGTTGACATTCTTTCCACTTC 60.128 42.308 0.00 0.00 0.00 3.01
2442 2538 4.142160 TGCGCTCATCAACTTATCTACACT 60.142 41.667 9.73 0.00 0.00 3.55
2444 2540 4.385358 TGCGCTCATCAACTTATCTACA 57.615 40.909 9.73 0.00 0.00 2.74
2528 2627 8.740906 CGAGGGATCTACTATTAGAAATTAGCA 58.259 37.037 0.00 0.00 37.88 3.49
2529 2628 8.958506 TCGAGGGATCTACTATTAGAAATTAGC 58.041 37.037 0.00 0.00 37.88 3.09
2580 2679 3.667960 CGCTTTCACCAATTCTACTGTGC 60.668 47.826 0.00 0.00 0.00 4.57
2581 2680 3.745975 TCGCTTTCACCAATTCTACTGTG 59.254 43.478 0.00 0.00 0.00 3.66
2582 2681 3.997021 CTCGCTTTCACCAATTCTACTGT 59.003 43.478 0.00 0.00 0.00 3.55
2583 2682 3.181516 GCTCGCTTTCACCAATTCTACTG 60.182 47.826 0.00 0.00 0.00 2.74
2584 2683 3.003480 GCTCGCTTTCACCAATTCTACT 58.997 45.455 0.00 0.00 0.00 2.57
2591 2690 0.380378 GTGTTGCTCGCTTTCACCAA 59.620 50.000 0.00 0.00 0.00 3.67
2626 2725 2.289565 CCTTTACCAATTCTCTCGCCC 58.710 52.381 0.00 0.00 0.00 6.13
2717 2816 4.881273 TGACCACACTGTAAATATGCATCC 59.119 41.667 0.19 0.00 0.00 3.51
2739 2838 1.219646 AAAGCGCAAAAAGGTGCATG 58.780 45.000 11.47 0.00 46.43 4.06
2753 2852 0.039165 GGCAGACCCTTTCAAAAGCG 60.039 55.000 0.00 0.00 34.69 4.68
2780 2879 4.830600 GGTTTAGAAAATCCCAGTTGACCA 59.169 41.667 0.00 0.00 0.00 4.02
2797 2896 8.369218 AGTTGCAAATTTCTGAATTGGTTTAG 57.631 30.769 0.00 0.00 35.69 1.85
2826 2925 4.472286 TGCGCTATGCTTTTCACTAAAAC 58.528 39.130 9.73 0.00 46.63 2.43
2846 2945 6.183309 AGTCTCAACCGATCTTTAAATTGC 57.817 37.500 0.00 0.00 0.00 3.56
2859 2958 7.861630 TGAGATTTTCTTTTTAGTCTCAACCG 58.138 34.615 0.00 0.00 39.12 4.44
2875 2974 7.446001 AAAGTCCACTGAGATTGAGATTTTC 57.554 36.000 0.00 0.00 0.00 2.29
2876 2975 7.830099 AAAAGTCCACTGAGATTGAGATTTT 57.170 32.000 0.00 0.00 0.00 1.82
2877 2976 8.924511 TTAAAAGTCCACTGAGATTGAGATTT 57.075 30.769 0.00 0.00 0.00 2.17
2911 3039 3.357166 TCCCGTTTCAAAAATGGTTCG 57.643 42.857 9.25 0.00 0.00 3.95
2953 3081 2.355756 CGCCAAATCCGATCAAACATCT 59.644 45.455 0.00 0.00 0.00 2.90
3084 3213 1.228459 GGGTCGGGGAATATTGGCC 60.228 63.158 0.00 0.00 0.00 5.36
3139 3268 3.733960 CGACTCGACGTGGAGGCA 61.734 66.667 29.62 0.00 42.48 4.75
3224 3353 2.238646 TGTAAAGCAGGGGTGATCGATT 59.761 45.455 0.00 0.00 0.00 3.34
3237 3380 1.295357 CCACCGCGTGATGTAAAGCA 61.295 55.000 4.92 0.00 35.23 3.91
3296 3439 2.256461 GCTTTGGCAGTTGGCGAG 59.744 61.111 1.08 3.37 46.16 5.03
3321 3464 3.342370 CTACGAGCTGCTGCGACCA 62.342 63.158 21.95 9.95 45.42 4.02
3322 3465 2.580867 CTACGAGCTGCTGCGACC 60.581 66.667 21.95 3.08 45.42 4.79
3323 3466 2.155194 CACTACGAGCTGCTGCGAC 61.155 63.158 21.95 7.71 45.42 5.19
3325 3468 2.882777 CCACTACGAGCTGCTGCG 60.883 66.667 7.01 13.13 45.42 5.18
3327 3470 1.446792 CACCCACTACGAGCTGCTG 60.447 63.158 7.01 1.88 0.00 4.41
3328 3471 2.973899 CACCCACTACGAGCTGCT 59.026 61.111 0.00 0.00 0.00 4.24
3329 3472 2.815647 GCACCCACTACGAGCTGC 60.816 66.667 0.00 0.00 0.00 5.25
3330 3473 2.507102 CGCACCCACTACGAGCTG 60.507 66.667 0.00 0.00 0.00 4.24
3331 3474 2.675423 TCGCACCCACTACGAGCT 60.675 61.111 0.00 0.00 0.00 4.09
3332 3475 2.506438 GTCGCACCCACTACGAGC 60.506 66.667 0.00 0.00 36.34 5.03
3333 3476 2.202440 CGTCGCACCCACTACGAG 60.202 66.667 0.00 0.00 37.53 4.18
3525 3668 0.534203 AAGAAAACAAGCGGCGAGGA 60.534 50.000 12.98 0.00 0.00 3.71
3653 3796 0.616111 AGATTCTCCCACAGTCGCCT 60.616 55.000 0.00 0.00 0.00 5.52
3701 3854 4.069232 AGCTGCCGCTTGCTCGTA 62.069 61.111 0.00 0.00 46.47 3.43
3796 3965 1.954382 GCGAAACTTCAAAAGGAGGGT 59.046 47.619 0.00 0.00 0.00 4.34
3821 3990 6.769512 AGCTGAGAAAACTAATGGTCACTAA 58.230 36.000 0.00 0.00 0.00 2.24
3823 3992 5.234466 AGCTGAGAAAACTAATGGTCACT 57.766 39.130 0.00 0.00 0.00 3.41
3871 4040 2.355193 GCTTCTCCCTCTCGGTGCT 61.355 63.158 0.00 0.00 0.00 4.40
3872 4041 2.185608 GCTTCTCCCTCTCGGTGC 59.814 66.667 0.00 0.00 0.00 5.01
3873 4042 1.515020 CTGCTTCTCCCTCTCGGTG 59.485 63.158 0.00 0.00 0.00 4.94
3874 4043 1.684049 CCTGCTTCTCCCTCTCGGT 60.684 63.158 0.00 0.00 0.00 4.69
3875 4044 1.380515 TCCTGCTTCTCCCTCTCGG 60.381 63.158 0.00 0.00 0.00 4.63
3876 4045 0.682855 ACTCCTGCTTCTCCCTCTCG 60.683 60.000 0.00 0.00 0.00 4.04
3904 4073 2.129823 AGTGTGACACCGACGTTTAG 57.870 50.000 12.81 0.00 34.49 1.85
3956 4128 0.988678 GGTGGCTCCCATTAGTCCCT 60.989 60.000 0.00 0.00 35.28 4.20
3960 4132 1.212935 GTGATGGTGGCTCCCATTAGT 59.787 52.381 10.03 0.00 45.31 2.24
3971 4143 0.950555 CTCGTGTGTGGTGATGGTGG 60.951 60.000 0.00 0.00 0.00 4.61
4004 4176 9.415008 AGAGCTAGTTCTCACTTCTCAATTATA 57.585 33.333 2.81 0.00 35.46 0.98
4007 4179 6.603940 AGAGCTAGTTCTCACTTCTCAATT 57.396 37.500 2.81 0.00 35.46 2.32
4008 4180 6.183360 GCTAGAGCTAGTTCTCACTTCTCAAT 60.183 42.308 12.89 0.00 35.46 2.57
4010 4182 4.638421 GCTAGAGCTAGTTCTCACTTCTCA 59.362 45.833 12.89 0.00 35.46 3.27
4011 4183 5.169836 GCTAGAGCTAGTTCTCACTTCTC 57.830 47.826 12.89 0.00 38.21 2.87
4044 4222 0.454600 TACTGGATCGTCACTTCCGC 59.545 55.000 0.00 0.00 34.58 5.54
4046 4224 2.166664 AGCTTACTGGATCGTCACTTCC 59.833 50.000 0.00 0.00 0.00 3.46
4047 4225 3.182967 CAGCTTACTGGATCGTCACTTC 58.817 50.000 0.00 0.00 40.48 3.01
4082 4260 1.518903 GCTTGCCTCCTTTTCGTGCT 61.519 55.000 0.00 0.00 0.00 4.40
4083 4261 1.081175 GCTTGCCTCCTTTTCGTGC 60.081 57.895 0.00 0.00 0.00 5.34
4084 4262 0.883833 ATGCTTGCCTCCTTTTCGTG 59.116 50.000 0.00 0.00 0.00 4.35
4086 4264 1.131883 CTGATGCTTGCCTCCTTTTCG 59.868 52.381 0.00 0.00 0.00 3.46
4087 4265 1.475682 CCTGATGCTTGCCTCCTTTTC 59.524 52.381 0.00 0.00 0.00 2.29
4088 4266 1.553706 CCTGATGCTTGCCTCCTTTT 58.446 50.000 0.00 0.00 0.00 2.27
4089 4267 0.324091 CCCTGATGCTTGCCTCCTTT 60.324 55.000 0.00 0.00 0.00 3.11
4091 4269 1.617536 TCCCTGATGCTTGCCTCCT 60.618 57.895 0.00 0.00 0.00 3.69
4093 4271 0.254178 TTCTCCCTGATGCTTGCCTC 59.746 55.000 0.00 0.00 0.00 4.70
4255 4455 7.497925 ACTAACTTTCAAGACTTGGCTTAAG 57.502 36.000 15.13 14.24 42.30 1.85
4301 4506 0.185175 AAGGGCAAGGAAAAGGTCGT 59.815 50.000 0.00 0.00 0.00 4.34
4314 4519 1.821759 CACGACACACCAAAGGGCA 60.822 57.895 0.00 0.00 37.90 5.36
4315 4520 1.782028 GACACGACACACCAAAGGGC 61.782 60.000 0.00 0.00 37.90 5.19
4317 4522 0.808453 ACGACACGACACACCAAAGG 60.808 55.000 0.00 0.00 0.00 3.11
4318 4523 0.300491 CACGACACGACACACCAAAG 59.700 55.000 0.00 0.00 0.00 2.77
4319 4524 1.697772 GCACGACACGACACACCAAA 61.698 55.000 0.00 0.00 0.00 3.28
4340 4570 7.342026 TGCTCATTTTCTACCTACAGTATCTGA 59.658 37.037 3.70 0.00 35.18 3.27
4345 4575 6.070767 AGCTTGCTCATTTTCTACCTACAGTA 60.071 38.462 0.00 0.00 0.00 2.74
4361 4618 2.066393 ATCCCGGCTAGCTTGCTCA 61.066 57.895 19.45 2.17 0.00 4.26
4646 4904 1.380785 ATGCCTGGGTTGCTCCATG 60.381 57.895 0.00 0.00 36.05 3.66
4648 4906 2.036098 CATGCCTGGGTTGCTCCA 59.964 61.111 0.00 0.00 38.11 3.86
4650 4908 3.455469 GGCATGCCTGGGTTGCTC 61.455 66.667 29.98 0.00 36.62 4.26
4685 4943 2.621055 ACTTGCGTATTTGGTCTTGCAA 59.379 40.909 0.00 0.00 39.73 4.08
4705 4963 6.998673 AGGCAATTGATCCTGGTAGTATAAAC 59.001 38.462 10.34 0.00 0.00 2.01
4711 4969 3.287867 CAGGCAATTGATCCTGGTAGT 57.712 47.619 19.24 0.00 44.64 2.73
4717 4975 4.346730 TCATTGTTCAGGCAATTGATCCT 58.653 39.130 10.34 4.02 37.00 3.24
4718 4976 4.441079 CCTCATTGTTCAGGCAATTGATCC 60.441 45.833 10.34 1.31 37.00 3.36
4831 5096 3.258372 TCCATCTATTCTGCCGTGGTATC 59.742 47.826 0.00 0.00 0.00 2.24
4834 5099 1.496060 TCCATCTATTCTGCCGTGGT 58.504 50.000 0.00 0.00 0.00 4.16
4870 5135 9.856488 CTAACCTTCTCGCAGCTTATATATAAA 57.144 33.333 6.63 0.00 0.00 1.40
4878 5143 2.176889 ACCTAACCTTCTCGCAGCTTA 58.823 47.619 0.00 0.00 0.00 3.09
4879 5144 0.977395 ACCTAACCTTCTCGCAGCTT 59.023 50.000 0.00 0.00 0.00 3.74
4881 5146 1.360820 GAACCTAACCTTCTCGCAGC 58.639 55.000 0.00 0.00 0.00 5.25
4882 5147 2.011540 GGAACCTAACCTTCTCGCAG 57.988 55.000 0.00 0.00 0.00 5.18
4914 5193 2.039624 GGTGGAGAGGAGAGGCCA 59.960 66.667 5.01 0.00 40.02 5.36
4915 5194 2.766229 GGGTGGAGAGGAGAGGCC 60.766 72.222 0.00 0.00 0.00 5.19
4917 5196 0.975040 CAGTGGGTGGAGAGGAGAGG 60.975 65.000 0.00 0.00 0.00 3.69
4937 5216 4.104776 CGCATGTGGGCAGTAAATAAAAG 58.895 43.478 0.00 0.00 0.00 2.27
4998 5277 0.322008 GAGGCCACAACTCAGAAGGG 60.322 60.000 5.01 0.00 35.09 3.95
5030 5309 1.227380 GGCCACGATCGCTTCATCT 60.227 57.895 16.60 0.00 0.00 2.90
5033 5312 2.125552 CTGGCCACGATCGCTTCA 60.126 61.111 16.60 7.87 0.00 3.02
5101 5380 5.302059 TGGAAGTAAGTAGGAATCGATGGAG 59.698 44.000 0.00 0.00 0.00 3.86
5154 5468 0.591170 AGAAACCAATGGACAACGCG 59.409 50.000 6.16 3.53 0.00 6.01
5230 5549 7.967303 GCCATTATCTCTTTCTTTTGTGAGAAG 59.033 37.037 0.00 0.00 38.77 2.85
5361 5680 1.903404 CCCATGATTAAGCCCGCCC 60.903 63.158 0.00 0.00 0.00 6.13
5411 5730 2.289820 CCACATGCATTTCATCTCGGAG 59.710 50.000 0.00 0.00 31.79 4.63
5460 5779 7.119262 GGTTACAGCTTCGCATTATATATGGTT 59.881 37.037 0.00 0.00 0.00 3.67
5595 5967 7.372260 AGTTAATCAGATATGCTTCCACTCT 57.628 36.000 0.00 0.00 0.00 3.24
5756 6131 0.614134 GGACGGAGGGAGTGGTAGTT 60.614 60.000 0.00 0.00 0.00 2.24
5839 6214 3.375647 AAGAGACTACTCCCTCTGTCC 57.624 52.381 0.00 0.00 43.53 4.02
5843 6218 5.799978 TTTCCTAAGAGACTACTCCCTCT 57.200 43.478 0.00 0.00 43.53 3.69
5920 6295 7.413328 CGATGCAGAATGATTTTCTGTTCAGTA 60.413 37.037 14.76 0.00 45.66 2.74
5921 6296 6.585695 ATGCAGAATGATTTTCTGTTCAGT 57.414 33.333 14.76 0.00 45.66 3.41
5942 6317 3.742433 ACAGATTAGAAGGGCTCGATG 57.258 47.619 0.00 0.00 0.00 3.84
5944 6319 3.096852 TCAACAGATTAGAAGGGCTCGA 58.903 45.455 0.00 0.00 0.00 4.04
5977 6352 7.094631 AGGAAAACAACAGTTAACCTTTGTTC 58.905 34.615 24.63 17.43 40.44 3.18
6261 6636 1.694018 GCACTCTCTGCACGCATCAG 61.694 60.000 0.00 0.00 46.29 2.90
6322 6697 3.118261 AGACCAACACAGAAGAGCTTCAA 60.118 43.478 12.32 0.00 41.84 2.69
6530 6927 8.510243 TGAACTGTTGATGCAGAATAATGTAT 57.490 30.769 0.00 0.00 39.62 2.29
6772 7176 7.497579 TCAGAAACACAACTTGCTCATACTAAA 59.502 33.333 0.00 0.00 0.00 1.85
7007 7415 6.205464 TGTCATCTTCTTCTTCTTTTTGCGAT 59.795 34.615 0.00 0.00 0.00 4.58
7008 7416 5.527214 TGTCATCTTCTTCTTCTTTTTGCGA 59.473 36.000 0.00 0.00 0.00 5.10
7017 7425 7.598278 TCAGTTCTACTGTCATCTTCTTCTTC 58.402 38.462 6.71 0.00 46.03 2.87
7019 7427 7.395772 TCATCAGTTCTACTGTCATCTTCTTCT 59.604 37.037 6.71 0.00 46.03 2.85
7020 7428 7.542890 TCATCAGTTCTACTGTCATCTTCTTC 58.457 38.462 6.71 0.00 46.03 2.87
7021 7429 7.473735 TCATCAGTTCTACTGTCATCTTCTT 57.526 36.000 6.71 0.00 46.03 2.52
7022 7430 6.405731 GCTCATCAGTTCTACTGTCATCTTCT 60.406 42.308 6.71 0.00 46.03 2.85
7023 7431 5.748152 GCTCATCAGTTCTACTGTCATCTTC 59.252 44.000 6.71 0.00 46.03 2.87
7024 7432 5.421693 AGCTCATCAGTTCTACTGTCATCTT 59.578 40.000 6.71 0.00 46.03 2.40
7051 7459 8.483307 TTTGACCTGATATAAGTTACGGTTTC 57.517 34.615 0.00 0.00 0.00 2.78
7055 7463 6.346598 CGCATTTGACCTGATATAAGTTACGG 60.347 42.308 0.00 0.00 0.00 4.02
7112 7520 1.226379 GTCAATCATGCCAACCGCG 60.226 57.895 0.00 0.00 42.08 6.46
7140 7548 2.094803 CGTAGAGATGCTGGATGCCTAG 60.095 54.545 0.00 0.00 42.00 3.02
7480 7892 0.250513 GGAGACCGATCAAGCAGGTT 59.749 55.000 0.00 0.00 38.57 3.50
7767 8179 4.338379 CATTCCTGCAGAGATCATCAGA 57.662 45.455 17.39 0.00 0.00 3.27
7840 8258 3.394836 GAAGAGGAGCCCCGCAGT 61.395 66.667 0.00 0.00 37.58 4.40
8099 8523 0.593128 GCAAACACAGAGCCGAATGT 59.407 50.000 0.00 0.00 0.00 2.71
8328 8756 2.550180 GAGCACTCAGAGAAAACAACCC 59.450 50.000 3.79 0.00 0.00 4.11
8363 8791 9.719355 TGTCATCTATACACAAAGCTTCTTTTA 57.281 29.630 0.00 0.00 0.00 1.52
8364 8792 8.621532 TGTCATCTATACACAAAGCTTCTTTT 57.378 30.769 0.00 0.00 0.00 2.27
8435 8868 5.446143 AATGCAATAGACGTGTTTGGAAA 57.554 34.783 0.00 0.00 0.00 3.13
8535 9001 3.567164 CCTGAACAGATTGGATATGTGGC 59.433 47.826 3.19 0.00 34.49 5.01
8592 9081 4.024556 CAGATGCCGGAGTAATAAAAGCTG 60.025 45.833 5.05 0.00 0.00 4.24
8681 9172 8.314751 AGTTAAGCTGAGTGTTCAACTATATGT 58.685 33.333 0.00 0.00 40.07 2.29
8702 9202 9.607988 TTCTGAATGTTTAGAGTGTTCAGTTAA 57.392 29.630 11.71 0.25 43.71 2.01
8891 9391 5.049828 TCTGACTATGCATAAATGGTGTCG 58.950 41.667 8.00 7.25 0.00 4.35
8998 9499 8.202137 AGTTGTGCCTTGTAGTATTTCGTATAT 58.798 33.333 0.00 0.00 0.00 0.86
9209 9715 7.664318 GGATCTTTACACTTCTGGGTTTTTCTA 59.336 37.037 0.00 0.00 0.00 2.10
9267 9773 6.237861 GCGAACACTAACAATTACAGATCTCC 60.238 42.308 0.00 0.00 0.00 3.71
9305 12655 8.410141 TCGTTTGAACATGGTCTATTTTCTTTT 58.590 29.630 12.94 0.00 0.00 2.27
9307 12657 7.308589 CCTCGTTTGAACATGGTCTATTTTCTT 60.309 37.037 12.94 0.00 0.00 2.52
9333 12683 2.416972 CCTTCTAGCCTACACGAACACC 60.417 54.545 0.00 0.00 0.00 4.16
9341 12691 2.868964 ATGGACCCTTCTAGCCTACA 57.131 50.000 0.00 0.00 0.00 2.74
9345 12695 3.366052 TCAAAATGGACCCTTCTAGCC 57.634 47.619 0.00 0.00 0.00 3.93
9348 12698 4.735369 TGCTTTCAAAATGGACCCTTCTA 58.265 39.130 0.00 0.00 0.00 2.10
9354 12704 4.441792 ACAACTTGCTTTCAAAATGGACC 58.558 39.130 0.00 0.00 0.00 4.46
9386 12736 3.786368 AAATTTGGGGTCATTTGGTGG 57.214 42.857 0.00 0.00 0.00 4.61
9409 12759 4.994907 TGCGTAATAGAAGCTAGTGGAA 57.005 40.909 0.00 0.00 33.09 3.53
9410 12760 4.994907 TTGCGTAATAGAAGCTAGTGGA 57.005 40.909 0.00 0.00 33.09 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.