Multiple sequence alignment - TraesCS2D01G287300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G287300 chr2D 100.000 5303 0 0 1 5303 367506749 367501447 0.000000e+00 9793.0
1 TraesCS2D01G287300 chr2D 92.216 167 13 0 4586 4752 73402885 73403051 2.470000e-58 237.0
2 TraesCS2D01G287300 chr2D 90.556 180 13 3 4574 4749 526524942 526525121 8.880000e-58 235.0
3 TraesCS2D01G287300 chr2D 80.303 264 52 0 2832 3095 367921944 367922207 3.240000e-47 200.0
4 TraesCS2D01G287300 chr2D 95.455 66 3 0 5238 5303 584799499 584799434 7.260000e-19 106.0
5 TraesCS2D01G287300 chr2A 93.763 4217 159 41 428 4586 497656275 497652105 0.000000e+00 6235.0
6 TraesCS2D01G287300 chr2A 94.400 250 10 2 4753 4998 497652098 497651849 1.080000e-101 381.0
7 TraesCS2D01G287300 chr2A 93.939 165 10 0 4585 4749 729191553 729191717 3.170000e-62 250.0
8 TraesCS2D01G287300 chr2A 93.293 164 11 0 4586 4749 157541746 157541909 5.310000e-60 243.0
9 TraesCS2D01G287300 chr2A 80.303 264 52 0 2832 3095 498042668 498042931 3.240000e-47 200.0
10 TraesCS2D01G287300 chr2A 92.366 131 9 1 4988 5117 497649574 497649444 9.070000e-43 185.0
11 TraesCS2D01G287300 chr2A 95.413 109 5 0 5098 5206 71629116 71629224 1.960000e-39 174.0
12 TraesCS2D01G287300 chr2A 94.393 107 4 1 1 105 497656563 497656457 4.250000e-36 163.0
13 TraesCS2D01G287300 chr2A 97.436 78 2 0 352 429 497656407 497656330 3.330000e-27 134.0
14 TraesCS2D01G287300 chr2A 95.522 67 3 0 5237 5303 574968934 574969000 2.020000e-19 108.0
15 TraesCS2D01G287300 chr2A 95.000 60 1 1 195 252 497656465 497656406 5.650000e-15 93.5
16 TraesCS2D01G287300 chr2A 95.652 46 2 0 5194 5239 497649390 497649345 2.050000e-09 75.0
17 TraesCS2D01G287300 chr2B 93.811 3862 132 44 638 4469 436241568 436237784 0.000000e+00 5709.0
18 TraesCS2D01G287300 chr2B 95.785 261 8 3 1 258 436242114 436241854 8.210000e-113 418.0
19 TraesCS2D01G287300 chr2B 93.293 164 7 2 349 511 436241861 436241701 6.860000e-59 239.0
20 TraesCS2D01G287300 chr2B 93.243 148 6 2 4753 4900 436236383 436236240 1.160000e-51 215.0
21 TraesCS2D01G287300 chr2B 80.303 264 52 0 2832 3095 436960280 436960543 3.240000e-47 200.0
22 TraesCS2D01G287300 chr2B 95.495 111 5 0 497 607 436241677 436241567 1.520000e-40 178.0
23 TraesCS2D01G287300 chr2B 88.000 125 13 1 4463 4587 436236511 436236389 4.280000e-31 147.0
24 TraesCS2D01G287300 chr4D 79.778 2344 325 97 1937 4199 476305457 476303182 0.000000e+00 1565.0
25 TraesCS2D01G287300 chr4D 93.939 231 14 0 1286 1516 476306171 476305941 3.040000e-92 350.0
26 TraesCS2D01G287300 chr4D 95.192 104 3 2 249 351 494042367 494042469 4.250000e-36 163.0
27 TraesCS2D01G287300 chr4B 79.680 2313 324 85 1937 4199 600657049 600654833 0.000000e+00 1533.0
28 TraesCS2D01G287300 chr4B 94.372 231 13 0 1286 1516 600657761 600657531 6.530000e-94 355.0
29 TraesCS2D01G287300 chr4B 86.923 260 34 0 1601 1860 600657434 600657175 5.190000e-75 292.0
30 TraesCS2D01G287300 chr4B 93.636 110 3 4 250 358 621424796 621424690 1.530000e-35 161.0
31 TraesCS2D01G287300 chr4A 83.464 1403 174 33 2832 4199 683486505 683485126 0.000000e+00 1253.0
32 TraesCS2D01G287300 chr4A 78.155 824 128 39 1937 2726 683487392 683486587 1.340000e-130 477.0
33 TraesCS2D01G287300 chr4A 94.372 231 13 0 1286 1516 683488120 683487890 6.530000e-94 355.0
34 TraesCS2D01G287300 chr4A 86.891 267 34 1 1594 1860 683487773 683487508 1.120000e-76 298.0
35 TraesCS2D01G287300 chr4A 95.455 66 3 0 5238 5303 594876030 594876095 7.260000e-19 106.0
36 TraesCS2D01G287300 chr5D 96.951 164 4 1 4586 4749 582409 582247 1.880000e-69 274.0
37 TraesCS2D01G287300 chr5D 96.386 166 5 1 4586 4750 575283 575448 6.770000e-69 272.0
38 TraesCS2D01G287300 chr5D 91.736 121 10 0 5089 5209 547442031 547442151 9.130000e-38 169.0
39 TraesCS2D01G287300 chr5A 93.103 174 12 0 4580 4753 567110797 567110970 6.820000e-64 255.0
40 TraesCS2D01G287300 chr5A 97.222 108 3 0 5099 5206 169309776 169309883 3.260000e-42 183.0
41 TraesCS2D01G287300 chr5A 92.373 118 9 0 5089 5206 65012426 65012543 9.130000e-38 169.0
42 TraesCS2D01G287300 chr5A 94.595 37 2 0 3692 3728 565753576 565753540 2.060000e-04 58.4
43 TraesCS2D01G287300 chr6A 92.857 168 12 0 4583 4750 5939074 5939241 1.480000e-60 244.0
44 TraesCS2D01G287300 chr6A 83.544 237 36 2 1282 1515 33542563 33542327 8.940000e-53 219.0
45 TraesCS2D01G287300 chr6B 92.308 169 12 1 4585 4752 548811250 548811082 6.860000e-59 239.0
46 TraesCS2D01G287300 chr6B 91.667 72 6 0 5232 5303 191963820 191963749 3.380000e-17 100.0
47 TraesCS2D01G287300 chrUn 95.614 114 4 1 5093 5206 218481711 218481599 1.170000e-41 182.0
48 TraesCS2D01G287300 chr7A 92.683 123 9 0 5086 5208 166792072 166791950 1.520000e-40 178.0
49 TraesCS2D01G287300 chr7A 93.220 118 5 3 237 354 406995298 406995412 2.540000e-38 171.0
50 TraesCS2D01G287300 chr3A 93.388 121 7 1 5089 5208 651627874 651627754 1.520000e-40 178.0
51 TraesCS2D01G287300 chr3A 95.455 110 5 0 5099 5208 59517086 59517195 5.460000e-40 176.0
52 TraesCS2D01G287300 chr6D 94.737 114 5 1 5093 5206 103085453 103085341 5.460000e-40 176.0
53 TraesCS2D01G287300 chr6D 93.578 109 7 0 246 354 374820199 374820307 4.250000e-36 163.0
54 TraesCS2D01G287300 chr5B 95.413 109 5 0 246 354 296853885 296853993 1.960000e-39 174.0
55 TraesCS2D01G287300 chr5B 91.139 79 5 2 5227 5303 257833821 257833899 7.260000e-19 106.0
56 TraesCS2D01G287300 chr5B 93.056 72 5 0 5232 5303 261358235 261358164 7.260000e-19 106.0
57 TraesCS2D01G287300 chr3D 97.059 102 3 0 254 355 426879578 426879679 7.060000e-39 172.0
58 TraesCS2D01G287300 chr1A 92.857 112 8 0 254 365 386427577 386427688 4.250000e-36 163.0
59 TraesCS2D01G287300 chr7D 94.340 106 5 1 250 355 190163219 190163115 1.530000e-35 161.0
60 TraesCS2D01G287300 chr7B 90.833 120 8 3 234 353 478835150 478835034 1.980000e-34 158.0
61 TraesCS2D01G287300 chr1B 95.455 66 3 0 5238 5303 72877057 72877122 7.260000e-19 106.0
62 TraesCS2D01G287300 chr1B 94.203 69 4 0 5235 5303 317319509 317319577 7.260000e-19 106.0
63 TraesCS2D01G287300 chr1B 95.455 66 3 0 5238 5303 686832318 686832383 7.260000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G287300 chr2D 367501447 367506749 5302 True 9793.000000 9793 100.000000 1 5303 1 chr2D.!!$R1 5302
1 TraesCS2D01G287300 chr2A 497649345 497656563 7218 True 1038.071429 6235 94.715714 1 5239 7 chr2A.!!$R1 5238
2 TraesCS2D01G287300 chr2B 436236240 436242114 5874 True 1151.000000 5709 93.271167 1 4900 6 chr2B.!!$R1 4899
3 TraesCS2D01G287300 chr4D 476303182 476306171 2989 True 957.500000 1565 86.858500 1286 4199 2 chr4D.!!$R1 2913
4 TraesCS2D01G287300 chr4B 600654833 600657761 2928 True 726.666667 1533 86.991667 1286 4199 3 chr4B.!!$R2 2913
5 TraesCS2D01G287300 chr4A 683485126 683488120 2994 True 595.750000 1253 85.720500 1286 4199 4 chr4A.!!$R1 2913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 376 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.0 0.0 0.0 0.00 3.28 F
351 457 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.0 0.0 0.0 0.00 2.73 F
1392 1608 0.413832 TCTACTCCAGCACCTTCCCT 59.586 55.0 0.0 0.0 0.00 4.20 F
1516 1732 0.790207 CAACGACAACGGAGATGGTG 59.210 55.0 0.0 0.0 44.46 4.17 F
1827 2081 1.299541 GCACGTCAATGGTGATAGGG 58.700 55.0 0.0 0.0 37.60 3.53 F
3360 3769 0.469331 TCATCGAGGGCGGATACCTT 60.469 55.0 0.0 0.0 38.79 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 2081 0.034089 CTGGGGTCAAGGTTCCATCC 60.034 60.000 0.00 0.0 0.00 3.51 R
2065 2399 3.980775 GCTGCACAACGAACAAATGTTAT 59.019 39.130 0.00 0.0 38.56 1.89 R
3282 3691 0.386478 AGCCGAACACGACGTAGAAC 60.386 55.000 0.00 0.0 0.00 3.01 R
3354 3763 2.918712 CGAAGCAGATGGGAAGGTAT 57.081 50.000 0.00 0.0 0.00 2.73 R
3765 4174 3.603532 GATGAACATCTTGAGCCTGTCA 58.396 45.455 7.45 0.0 35.04 3.58 R
4324 4755 0.254784 AAAATCCCTCCCTCCCCCAT 60.255 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 206 3.983044 AACTCAGGGTTGGTGTATCTC 57.017 47.619 0.00 0.00 36.70 2.75
103 207 3.191888 ACTCAGGGTTGGTGTATCTCT 57.808 47.619 0.00 0.00 0.00 3.10
104 208 3.100671 ACTCAGGGTTGGTGTATCTCTC 58.899 50.000 0.00 0.00 0.00 3.20
105 209 2.432510 CTCAGGGTTGGTGTATCTCTCC 59.567 54.545 0.00 0.00 0.00 3.71
106 210 1.486726 CAGGGTTGGTGTATCTCTCCC 59.513 57.143 0.00 0.00 0.00 4.30
107 211 1.366435 AGGGTTGGTGTATCTCTCCCT 59.634 52.381 0.00 0.00 38.91 4.20
108 212 1.486726 GGGTTGGTGTATCTCTCCCTG 59.513 57.143 0.00 0.00 0.00 4.45
109 213 1.486726 GGTTGGTGTATCTCTCCCTGG 59.513 57.143 0.00 0.00 0.00 4.45
110 214 2.188817 GTTGGTGTATCTCTCCCTGGT 58.811 52.381 0.00 0.00 0.00 4.00
111 215 2.572104 GTTGGTGTATCTCTCCCTGGTT 59.428 50.000 0.00 0.00 0.00 3.67
112 216 2.915869 TGGTGTATCTCTCCCTGGTTT 58.084 47.619 0.00 0.00 0.00 3.27
113 217 2.571653 TGGTGTATCTCTCCCTGGTTTG 59.428 50.000 0.00 0.00 0.00 2.93
114 218 2.838202 GGTGTATCTCTCCCTGGTTTGA 59.162 50.000 0.00 0.00 0.00 2.69
115 219 3.263425 GGTGTATCTCTCCCTGGTTTGAA 59.737 47.826 0.00 0.00 0.00 2.69
116 220 4.508662 GTGTATCTCTCCCTGGTTTGAAG 58.491 47.826 0.00 0.00 0.00 3.02
117 221 3.519510 TGTATCTCTCCCTGGTTTGAAGG 59.480 47.826 0.00 0.00 34.31 3.46
118 222 2.118403 TCTCTCCCTGGTTTGAAGGT 57.882 50.000 0.00 0.00 32.45 3.50
119 223 1.978580 TCTCTCCCTGGTTTGAAGGTC 59.021 52.381 0.00 0.00 32.45 3.85
120 224 1.699634 CTCTCCCTGGTTTGAAGGTCA 59.300 52.381 0.00 0.00 32.45 4.02
121 225 2.307098 CTCTCCCTGGTTTGAAGGTCAT 59.693 50.000 0.00 0.00 32.45 3.06
122 226 3.519510 CTCTCCCTGGTTTGAAGGTCATA 59.480 47.826 0.00 0.00 32.45 2.15
123 227 3.913799 TCTCCCTGGTTTGAAGGTCATAA 59.086 43.478 0.00 0.00 32.45 1.90
124 228 4.540099 TCTCCCTGGTTTGAAGGTCATAAT 59.460 41.667 0.00 0.00 32.45 1.28
125 229 4.855340 TCCCTGGTTTGAAGGTCATAATC 58.145 43.478 0.00 0.00 32.45 1.75
126 230 3.627577 CCCTGGTTTGAAGGTCATAATCG 59.372 47.826 0.00 0.00 32.45 3.34
127 231 4.513442 CCTGGTTTGAAGGTCATAATCGA 58.487 43.478 0.00 0.00 0.00 3.59
128 232 4.332819 CCTGGTTTGAAGGTCATAATCGAC 59.667 45.833 0.00 0.00 35.03 4.20
129 233 4.900684 TGGTTTGAAGGTCATAATCGACA 58.099 39.130 0.00 0.00 37.66 4.35
130 234 4.693566 TGGTTTGAAGGTCATAATCGACAC 59.306 41.667 0.00 0.00 37.66 3.67
131 235 4.693566 GGTTTGAAGGTCATAATCGACACA 59.306 41.667 0.00 0.00 37.66 3.72
132 236 5.180492 GGTTTGAAGGTCATAATCGACACAA 59.820 40.000 0.00 0.00 37.66 3.33
133 237 6.128007 GGTTTGAAGGTCATAATCGACACAAT 60.128 38.462 0.00 0.00 37.66 2.71
134 238 7.305474 GTTTGAAGGTCATAATCGACACAATT 58.695 34.615 0.00 0.00 37.66 2.32
135 239 7.447374 TTGAAGGTCATAATCGACACAATTT 57.553 32.000 0.00 0.00 37.66 1.82
136 240 8.554835 TTGAAGGTCATAATCGACACAATTTA 57.445 30.769 0.00 0.00 37.66 1.40
137 241 8.731275 TGAAGGTCATAATCGACACAATTTAT 57.269 30.769 0.00 0.00 37.66 1.40
138 242 9.173021 TGAAGGTCATAATCGACACAATTTATT 57.827 29.630 0.00 0.00 37.66 1.40
142 246 9.365311 GGTCATAATCGACACAATTTATTTACG 57.635 33.333 0.00 0.00 37.66 3.18
166 270 9.275398 ACGAAATATGTAAGTTTTTGTACAGGA 57.725 29.630 0.00 0.00 33.89 3.86
255 361 7.814587 TGCATACATGACAGCAATAGATACTAC 59.185 37.037 0.00 0.00 33.48 2.73
256 362 8.031864 GCATACATGACAGCAATAGATACTACT 58.968 37.037 0.00 0.00 0.00 2.57
257 363 9.566530 CATACATGACAGCAATAGATACTACTC 57.433 37.037 0.00 0.00 0.00 2.59
258 364 6.987386 ACATGACAGCAATAGATACTACTCC 58.013 40.000 0.00 0.00 0.00 3.85
259 365 6.015010 ACATGACAGCAATAGATACTACTCCC 60.015 42.308 0.00 0.00 0.00 4.30
260 366 5.706447 TGACAGCAATAGATACTACTCCCT 58.294 41.667 0.00 0.00 0.00 4.20
261 367 5.770663 TGACAGCAATAGATACTACTCCCTC 59.229 44.000 0.00 0.00 0.00 4.30
262 368 5.081032 ACAGCAATAGATACTACTCCCTCC 58.919 45.833 0.00 0.00 0.00 4.30
263 369 4.156922 CAGCAATAGATACTACTCCCTCCG 59.843 50.000 0.00 0.00 0.00 4.63
264 370 4.080687 GCAATAGATACTACTCCCTCCGT 58.919 47.826 0.00 0.00 0.00 4.69
265 371 4.156373 GCAATAGATACTACTCCCTCCGTC 59.844 50.000 0.00 0.00 0.00 4.79
266 372 2.955342 AGATACTACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
267 373 1.424684 AGATACTACTCCCTCCGTCCC 59.575 57.143 0.00 0.00 0.00 4.46
268 374 1.144503 GATACTACTCCCTCCGTCCCA 59.855 57.143 0.00 0.00 0.00 4.37
269 375 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
270 376 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
271 377 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
272 378 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
273 379 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
274 380 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
275 381 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
276 382 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
277 383 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
278 384 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
279 385 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
280 386 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
281 387 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
282 388 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
283 389 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
284 390 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
285 391 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
286 392 5.107065 CGTCCCAAAATAAGTGTCTCAACTC 60.107 44.000 0.00 0.00 0.00 3.01
287 393 5.998363 GTCCCAAAATAAGTGTCTCAACTCT 59.002 40.000 0.00 0.00 0.00 3.24
288 394 7.159372 GTCCCAAAATAAGTGTCTCAACTCTA 58.841 38.462 0.00 0.00 0.00 2.43
289 395 7.332182 GTCCCAAAATAAGTGTCTCAACTCTAG 59.668 40.741 0.00 0.00 0.00 2.43
290 396 7.016268 TCCCAAAATAAGTGTCTCAACTCTAGT 59.984 37.037 0.00 0.00 0.00 2.57
291 397 8.311836 CCCAAAATAAGTGTCTCAACTCTAGTA 58.688 37.037 0.00 0.00 0.00 1.82
292 398 9.141400 CCAAAATAAGTGTCTCAACTCTAGTAC 57.859 37.037 0.00 0.00 0.00 2.73
293 399 9.692749 CAAAATAAGTGTCTCAACTCTAGTACA 57.307 33.333 0.00 0.00 0.00 2.90
295 401 9.694137 AAATAAGTGTCTCAACTCTAGTACAAC 57.306 33.333 0.00 0.00 0.00 3.32
296 402 6.963083 AAGTGTCTCAACTCTAGTACAACT 57.037 37.500 0.00 0.00 0.00 3.16
297 403 6.963083 AGTGTCTCAACTCTAGTACAACTT 57.037 37.500 0.00 0.00 0.00 2.66
298 404 7.349412 AGTGTCTCAACTCTAGTACAACTTT 57.651 36.000 0.00 0.00 0.00 2.66
299 405 8.461249 AGTGTCTCAACTCTAGTACAACTTTA 57.539 34.615 0.00 0.00 0.00 1.85
300 406 9.080097 AGTGTCTCAACTCTAGTACAACTTTAT 57.920 33.333 0.00 0.00 0.00 1.40
326 432 8.015185 ACTAAGGTTAGTACAAAGTTGAGACA 57.985 34.615 0.32 0.00 41.92 3.41
327 433 7.924947 ACTAAGGTTAGTACAAAGTTGAGACAC 59.075 37.037 0.32 0.00 41.92 3.67
328 434 6.481434 AGGTTAGTACAAAGTTGAGACACT 57.519 37.500 0.00 0.00 0.00 3.55
329 435 6.885922 AGGTTAGTACAAAGTTGAGACACTT 58.114 36.000 0.00 0.00 38.74 3.16
330 436 8.015185 AGGTTAGTACAAAGTTGAGACACTTA 57.985 34.615 0.00 0.00 35.87 2.24
331 437 8.648693 AGGTTAGTACAAAGTTGAGACACTTAT 58.351 33.333 0.00 0.00 35.87 1.73
332 438 9.269453 GGTTAGTACAAAGTTGAGACACTTATT 57.731 33.333 0.00 0.00 35.87 1.40
336 442 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
337 443 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
338 444 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
339 445 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
340 446 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
341 447 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
342 448 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
343 449 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
344 450 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
345 451 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
346 452 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
347 453 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
348 454 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
349 455 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
350 456 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
351 457 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
352 458 1.002069 TTGGGACGGAGGGAGTACTA 58.998 55.000 0.00 0.00 0.00 1.82
493 655 6.820656 AGTAAATGAGGTCACTTATGCTTCAG 59.179 38.462 0.00 0.00 0.00 3.02
684 885 2.371841 AGTACACAATCACAAGGCAGGA 59.628 45.455 0.00 0.00 0.00 3.86
742 943 1.643868 GGAAACATGCATCGCACCGA 61.644 55.000 0.00 0.00 43.04 4.69
830 1031 5.707764 AGTCTTGCTTAGGAACAAAGGAATC 59.292 40.000 0.00 0.00 34.38 2.52
865 1066 4.776322 CAATGCTCCCACGCCGGA 62.776 66.667 5.05 0.00 36.56 5.14
978 1179 2.361230 GGCCATATAAGCCCCGCC 60.361 66.667 0.00 0.00 45.16 6.13
1012 1213 4.547859 CCTCCAAGGCATTCGGAG 57.452 61.111 17.37 17.37 45.02 4.63
1014 1215 1.604378 CTCCAAGGCATTCGGAGGT 59.396 57.895 16.83 0.00 42.27 3.85
1020 1221 2.690778 GGCATTCGGAGGTGTGCAC 61.691 63.158 10.75 10.75 39.27 4.57
1181 1388 1.067071 GGGTCTCAGGTACGTTCCTTG 60.067 57.143 11.54 7.73 35.37 3.61
1231 1438 4.644103 AATGTTGCAGCAATGTCCTATC 57.356 40.909 11.96 0.00 0.00 2.08
1232 1439 2.368439 TGTTGCAGCAATGTCCTATCC 58.632 47.619 11.96 0.00 0.00 2.59
1234 1441 0.541392 TGCAGCAATGTCCTATCCGT 59.459 50.000 0.00 0.00 0.00 4.69
1236 1443 1.473257 GCAGCAATGTCCTATCCGTGA 60.473 52.381 0.00 0.00 0.00 4.35
1237 1444 2.205074 CAGCAATGTCCTATCCGTGAC 58.795 52.381 0.00 0.00 0.00 3.67
1238 1445 1.831106 AGCAATGTCCTATCCGTGACA 59.169 47.619 0.00 0.00 44.86 3.58
1239 1446 2.159043 AGCAATGTCCTATCCGTGACAG 60.159 50.000 0.00 0.00 44.07 3.51
1240 1447 2.159099 GCAATGTCCTATCCGTGACAGA 60.159 50.000 0.00 0.00 44.07 3.41
1241 1448 3.448686 CAATGTCCTATCCGTGACAGAC 58.551 50.000 0.00 0.00 44.07 3.51
1242 1449 2.209690 TGTCCTATCCGTGACAGACA 57.790 50.000 0.00 0.00 36.62 3.41
1243 1450 2.092323 TGTCCTATCCGTGACAGACAG 58.908 52.381 0.00 0.00 36.62 3.51
1244 1451 2.290705 TGTCCTATCCGTGACAGACAGA 60.291 50.000 0.00 0.00 36.62 3.41
1245 1452 2.097791 GTCCTATCCGTGACAGACAGAC 59.902 54.545 0.00 0.00 0.00 3.51
1246 1453 2.092323 CCTATCCGTGACAGACAGACA 58.908 52.381 0.00 0.00 0.00 3.41
1392 1608 0.413832 TCTACTCCAGCACCTTCCCT 59.586 55.000 0.00 0.00 0.00 4.20
1516 1732 0.790207 CAACGACAACGGAGATGGTG 59.210 55.000 0.00 0.00 44.46 4.17
1564 1784 3.366374 GCCTGCTGTCATACCAGTTTTTC 60.366 47.826 0.00 0.00 34.84 2.29
1565 1785 3.191371 CCTGCTGTCATACCAGTTTTTCC 59.809 47.826 0.00 0.00 34.84 3.13
1567 1787 3.181434 TGCTGTCATACCAGTTTTTCCCT 60.181 43.478 0.00 0.00 34.84 4.20
1569 1789 4.280929 GCTGTCATACCAGTTTTTCCCTTT 59.719 41.667 0.00 0.00 34.84 3.11
1571 1791 6.685368 GCTGTCATACCAGTTTTTCCCTTTTT 60.685 38.462 0.00 0.00 34.84 1.94
1577 1799 9.040939 CATACCAGTTTTTCCCTTTTTGTAAAG 57.959 33.333 0.00 0.00 40.38 1.85
1718 1972 2.309528 TACCACATAGAAGCGCCAAG 57.690 50.000 2.29 0.00 0.00 3.61
1737 1991 3.306595 CTCGCAGCTCAAGAGGGCA 62.307 63.158 0.00 0.00 0.00 5.36
1785 2039 1.508088 CAAGGCGGCCAAGATTGTC 59.492 57.895 23.09 0.00 0.00 3.18
1827 2081 1.299541 GCACGTCAATGGTGATAGGG 58.700 55.000 0.00 0.00 37.60 3.53
1934 2251 5.535783 ACTGATGTTTTGTTCATGGATGTGA 59.464 36.000 0.00 0.00 0.00 3.58
2065 2399 3.774216 TGTGTCCATCAGTCCATCACATA 59.226 43.478 0.00 0.00 31.03 2.29
2078 2423 7.852454 CAGTCCATCACATATAACATTTGTTCG 59.148 37.037 0.00 0.00 39.31 3.95
2581 2970 3.008375 CCAACAGAAGGACCTCATCTGAA 59.992 47.826 24.18 0.00 42.48 3.02
2993 3393 4.084265 TCGCACAAGTACGAGGGA 57.916 55.556 0.00 0.00 33.69 4.20
3095 3495 1.519898 CGGCCACGCTTACGGTAAT 60.520 57.895 2.24 0.00 46.04 1.89
3098 3498 2.278854 GGCCACGCTTACGGTAATTAA 58.721 47.619 0.00 0.00 46.04 1.40
3118 3518 4.857509 AAGTAGCTAGCGAAGGATAAGG 57.142 45.455 9.55 0.00 0.00 2.69
3127 3527 3.763897 AGCGAAGGATAAGGCATTTGTTT 59.236 39.130 0.00 0.00 0.00 2.83
3128 3528 4.947388 AGCGAAGGATAAGGCATTTGTTTA 59.053 37.500 0.00 0.00 0.00 2.01
3163 3567 3.071023 AGGTTTTCATCTGACGGTCTGAA 59.929 43.478 19.48 13.09 0.00 3.02
3282 3691 2.286242 GCACGTCATCTTCATCATGCTG 60.286 50.000 0.00 0.00 0.00 4.41
3354 3763 1.515954 GAAGTTCATCGAGGGCGGA 59.484 57.895 0.00 0.00 38.28 5.54
3360 3769 0.469331 TCATCGAGGGCGGATACCTT 60.469 55.000 0.00 0.00 38.79 3.50
3765 4174 4.651008 TTCGCGGCGTTCCTCGTT 62.651 61.111 22.90 0.00 41.12 3.85
3835 4244 3.743091 GACGAAGAGGAGAGCGGCG 62.743 68.421 0.51 0.51 0.00 6.46
3836 4245 4.560856 CGAAGAGGAGAGCGGCGG 62.561 72.222 9.78 0.00 0.00 6.13
3863 4272 4.065281 CGAGGTTTCGGACGCCCT 62.065 66.667 0.00 0.00 43.05 5.19
4233 4657 3.243336 GAGTTCACCACGAGTATGTGAC 58.757 50.000 7.11 4.52 42.55 3.67
4291 4722 1.280746 CAAAGTGCCGACAGCTGTG 59.719 57.895 27.27 16.13 44.23 3.66
4313 4744 4.340097 TGGATTCAATAAGGAAGCATGCAG 59.660 41.667 21.98 0.00 34.97 4.41
4375 4808 5.006386 TGGTTGCAACAAGGTTTTCATTTT 58.994 33.333 29.55 0.00 0.00 1.82
4386 4819 7.976175 ACAAGGTTTTCATTTTCACTTTCTCTC 59.024 33.333 0.00 0.00 0.00 3.20
4507 6220 0.474854 TTCCCCACTACCAAGGAGCA 60.475 55.000 0.00 0.00 0.00 4.26
4509 6222 1.299976 CCCACTACCAAGGAGCACC 59.700 63.158 0.00 0.00 0.00 5.01
4518 6231 0.868406 CAAGGAGCACCGTCAACTTC 59.132 55.000 0.00 0.00 41.83 3.01
4540 6253 7.878644 ACTTCTTTTACATTACCTCTGTTCTCC 59.121 37.037 0.00 0.00 0.00 3.71
4546 6259 6.936968 ACATTACCTCTGTTCTCCTTTACT 57.063 37.500 0.00 0.00 0.00 2.24
4547 6260 9.537852 TTACATTACCTCTGTTCTCCTTTACTA 57.462 33.333 0.00 0.00 0.00 1.82
4587 6300 8.783093 TGGTGCATACATATCTTAGCAAAATAC 58.217 33.333 0.00 0.00 33.37 1.89
4588 6301 9.003658 GGTGCATACATATCTTAGCAAAATACT 57.996 33.333 0.00 0.00 33.37 2.12
4591 6304 8.669243 GCATACATATCTTAGCAAAATACTCCC 58.331 37.037 0.00 0.00 0.00 4.30
4592 6305 9.950496 CATACATATCTTAGCAAAATACTCCCT 57.050 33.333 0.00 0.00 0.00 4.20
4594 6307 7.454225 ACATATCTTAGCAAAATACTCCCTCC 58.546 38.462 0.00 0.00 0.00 4.30
4595 6308 4.402056 TCTTAGCAAAATACTCCCTCCG 57.598 45.455 0.00 0.00 0.00 4.63
4596 6309 3.773119 TCTTAGCAAAATACTCCCTCCGT 59.227 43.478 0.00 0.00 0.00 4.69
4597 6310 4.224370 TCTTAGCAAAATACTCCCTCCGTT 59.776 41.667 0.00 0.00 0.00 4.44
4598 6311 2.987232 AGCAAAATACTCCCTCCGTTC 58.013 47.619 0.00 0.00 0.00 3.95
4599 6312 2.014857 GCAAAATACTCCCTCCGTTCC 58.985 52.381 0.00 0.00 0.00 3.62
4600 6313 2.355818 GCAAAATACTCCCTCCGTTCCT 60.356 50.000 0.00 0.00 0.00 3.36
4601 6314 3.118519 GCAAAATACTCCCTCCGTTCCTA 60.119 47.826 0.00 0.00 0.00 2.94
4602 6315 4.624604 GCAAAATACTCCCTCCGTTCCTAA 60.625 45.833 0.00 0.00 0.00 2.69
4603 6316 5.493809 CAAAATACTCCCTCCGTTCCTAAA 58.506 41.667 0.00 0.00 0.00 1.85
4604 6317 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
4605 6318 7.277396 CAAAATACTCCCTCCGTTCCTAAATA 58.723 38.462 0.00 0.00 0.00 1.40
4606 6319 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
4607 6320 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
4608 6321 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
4609 6322 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4610 6323 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4611 6324 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4612 6325 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4613 6326 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4614 6327 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4615 6328 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4646 6359 9.332301 GATTTCACTATAGACTACATACGAAGC 57.668 37.037 6.78 0.00 0.00 3.86
4647 6360 7.797038 TTCACTATAGACTACATACGAAGCA 57.203 36.000 6.78 0.00 0.00 3.91
4648 6361 7.797038 TCACTATAGACTACATACGAAGCAA 57.203 36.000 6.78 0.00 0.00 3.91
4649 6362 8.217131 TCACTATAGACTACATACGAAGCAAA 57.783 34.615 6.78 0.00 0.00 3.68
4650 6363 8.680001 TCACTATAGACTACATACGAAGCAAAA 58.320 33.333 6.78 0.00 0.00 2.44
4651 6364 9.464714 CACTATAGACTACATACGAAGCAAAAT 57.535 33.333 6.78 0.00 0.00 1.82
4652 6365 9.464714 ACTATAGACTACATACGAAGCAAAATG 57.535 33.333 6.78 0.00 0.00 2.32
4653 6366 9.678941 CTATAGACTACATACGAAGCAAAATGA 57.321 33.333 0.00 0.00 0.00 2.57
4654 6367 8.942338 ATAGACTACATACGAAGCAAAATGAA 57.058 30.769 0.00 0.00 0.00 2.57
4655 6368 7.849804 AGACTACATACGAAGCAAAATGAAT 57.150 32.000 0.00 0.00 0.00 2.57
4656 6369 7.688372 AGACTACATACGAAGCAAAATGAATG 58.312 34.615 0.00 0.00 0.00 2.67
4657 6370 7.549134 AGACTACATACGAAGCAAAATGAATGA 59.451 33.333 0.00 0.00 0.00 2.57
4658 6371 8.039603 ACTACATACGAAGCAAAATGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
4659 6372 7.962918 ACTACATACGAAGCAAAATGAATGAAC 59.037 33.333 0.00 0.00 0.00 3.18
4660 6373 6.092748 ACATACGAAGCAAAATGAATGAACC 58.907 36.000 0.00 0.00 0.00 3.62
4661 6374 4.853924 ACGAAGCAAAATGAATGAACCT 57.146 36.364 0.00 0.00 0.00 3.50
4662 6375 5.957842 ACGAAGCAAAATGAATGAACCTA 57.042 34.783 0.00 0.00 0.00 3.08
4663 6376 6.515272 ACGAAGCAAAATGAATGAACCTAT 57.485 33.333 0.00 0.00 0.00 2.57
4664 6377 7.624360 ACGAAGCAAAATGAATGAACCTATA 57.376 32.000 0.00 0.00 0.00 1.31
4665 6378 7.472543 ACGAAGCAAAATGAATGAACCTATAC 58.527 34.615 0.00 0.00 0.00 1.47
4666 6379 7.336931 ACGAAGCAAAATGAATGAACCTATACT 59.663 33.333 0.00 0.00 0.00 2.12
4667 6380 7.852945 CGAAGCAAAATGAATGAACCTATACTC 59.147 37.037 0.00 0.00 0.00 2.59
4668 6381 7.573968 AGCAAAATGAATGAACCTATACTCC 57.426 36.000 0.00 0.00 0.00 3.85
4669 6382 7.118723 AGCAAAATGAATGAACCTATACTCCA 58.881 34.615 0.00 0.00 0.00 3.86
4670 6383 7.615365 AGCAAAATGAATGAACCTATACTCCAA 59.385 33.333 0.00 0.00 0.00 3.53
4671 6384 8.250332 GCAAAATGAATGAACCTATACTCCAAA 58.750 33.333 0.00 0.00 0.00 3.28
4674 6387 9.753674 AAATGAATGAACCTATACTCCAAAAGA 57.246 29.630 0.00 0.00 0.00 2.52
4675 6388 8.738645 ATGAATGAACCTATACTCCAAAAGAC 57.261 34.615 0.00 0.00 0.00 3.01
4676 6389 6.816640 TGAATGAACCTATACTCCAAAAGACG 59.183 38.462 0.00 0.00 0.00 4.18
4677 6390 5.733620 TGAACCTATACTCCAAAAGACGT 57.266 39.130 0.00 0.00 0.00 4.34
4678 6391 5.717119 TGAACCTATACTCCAAAAGACGTC 58.283 41.667 7.70 7.70 0.00 4.34
4679 6392 5.479375 TGAACCTATACTCCAAAAGACGTCT 59.521 40.000 13.58 13.58 0.00 4.18
4680 6393 6.660521 TGAACCTATACTCCAAAAGACGTCTA 59.339 38.462 20.39 0.98 0.00 2.59
4681 6394 7.341256 TGAACCTATACTCCAAAAGACGTCTAT 59.659 37.037 20.39 8.33 0.00 1.98
4682 6395 8.757982 AACCTATACTCCAAAAGACGTCTATA 57.242 34.615 20.39 9.19 0.00 1.31
4683 6396 8.937207 ACCTATACTCCAAAAGACGTCTATAT 57.063 34.615 20.39 5.51 0.00 0.86
4689 6402 8.466617 ACTCCAAAAGACGTCTATATACATCT 57.533 34.615 20.39 0.00 0.00 2.90
4690 6403 8.353684 ACTCCAAAAGACGTCTATATACATCTG 58.646 37.037 20.39 0.00 0.00 2.90
4691 6404 8.459911 TCCAAAAGACGTCTATATACATCTGA 57.540 34.615 20.39 2.32 0.00 3.27
4692 6405 8.909923 TCCAAAAGACGTCTATATACATCTGAA 58.090 33.333 20.39 0.00 0.00 3.02
4693 6406 9.698309 CCAAAAGACGTCTATATACATCTGAAT 57.302 33.333 20.39 0.00 0.00 2.57
4710 6423 9.201989 ACATCTGAATGTAGTCTTTATAGTGGA 57.798 33.333 0.00 0.00 44.38 4.02
4743 6456 6.812879 AAAACTTACATTTAGGAACGGAGG 57.187 37.500 0.00 0.00 0.00 4.30
4744 6457 4.482952 ACTTACATTTAGGAACGGAGGG 57.517 45.455 0.00 0.00 0.00 4.30
4745 6458 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4746 6459 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4747 6460 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
4748 6461 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
4749 6462 4.296056 ACATTTAGGAACGGAGGGAGTAT 58.704 43.478 0.00 0.00 0.00 2.12
4750 6463 5.461327 ACATTTAGGAACGGAGGGAGTATA 58.539 41.667 0.00 0.00 0.00 1.47
4751 6464 6.082707 ACATTTAGGAACGGAGGGAGTATAT 58.917 40.000 0.00 0.00 0.00 0.86
4791 6504 6.068010 AGGACATGGTTTAAGACAACATGAA 58.932 36.000 10.02 0.00 0.00 2.57
4881 6601 1.950216 GCCCTTAAGTTGCTAGGATGC 59.050 52.381 0.97 0.00 0.00 3.91
4922 6642 1.135315 CAAACTGCTGCACACACAACT 60.135 47.619 0.00 0.00 0.00 3.16
5008 9013 5.050091 GCATGGACGACTTTATTGGACTATG 60.050 44.000 0.00 0.00 0.00 2.23
5009 9014 5.925506 TGGACGACTTTATTGGACTATGA 57.074 39.130 0.00 0.00 0.00 2.15
5013 9018 5.670485 ACGACTTTATTGGACTATGATGCA 58.330 37.500 0.00 0.00 0.00 3.96
5052 9057 1.448540 GTGTGCATAGCCGTGCTCT 60.449 57.895 11.61 0.00 45.27 4.09
5076 9081 4.345257 TCATAGATACTCCTGGTTGGCTTC 59.655 45.833 0.00 0.00 35.26 3.86
5087 9092 2.170607 TGGTTGGCTTCTCTATAGGTGC 59.829 50.000 0.00 0.00 0.00 5.01
5104 9109 5.291905 AGGTGCACATAAATACTACTCCC 57.708 43.478 20.43 0.00 0.00 4.30
5106 9111 5.428783 AGGTGCACATAAATACTACTCCCTT 59.571 40.000 20.43 0.00 0.00 3.95
5110 9115 6.047231 GCACATAAATACTACTCCCTTCGTT 58.953 40.000 0.00 0.00 0.00 3.85
5114 9119 5.750352 AAATACTACTCCCTTCGTTCCAA 57.250 39.130 0.00 0.00 0.00 3.53
5116 9121 5.952347 ATACTACTCCCTTCGTTCCAAAT 57.048 39.130 0.00 0.00 0.00 2.32
5119 9124 5.485620 ACTACTCCCTTCGTTCCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
5120 9125 4.635699 ACTCCCTTCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
5121 9126 4.576879 ACTCCCTTCGTTCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
5123 9128 5.174037 TCCCTTCGTTCCAAATTACTCAT 57.826 39.130 0.00 0.00 0.00 2.90
5127 9132 5.808540 CCTTCGTTCCAAATTACTCATCGTA 59.191 40.000 0.00 0.00 0.00 3.43
5128 9133 6.019801 CCTTCGTTCCAAATTACTCATCGTAG 60.020 42.308 0.00 0.00 0.00 3.51
5129 9134 6.198650 TCGTTCCAAATTACTCATCGTAGA 57.801 37.500 0.00 0.00 45.75 2.59
5130 9135 6.623486 TCGTTCCAAATTACTCATCGTAGAA 58.377 36.000 0.00 0.00 43.58 2.10
5131 9136 7.092079 TCGTTCCAAATTACTCATCGTAGAAA 58.908 34.615 0.00 0.00 43.58 2.52
5132 9137 7.762615 TCGTTCCAAATTACTCATCGTAGAAAT 59.237 33.333 0.00 0.00 43.58 2.17
5133 9138 7.846107 CGTTCCAAATTACTCATCGTAGAAATG 59.154 37.037 0.00 0.00 43.58 2.32
5134 9139 8.879759 GTTCCAAATTACTCATCGTAGAAATGA 58.120 33.333 0.00 0.00 43.58 2.57
5136 9141 9.613428 TCCAAATTACTCATCGTAGAAATGAAT 57.387 29.630 0.00 0.00 43.58 2.57
5177 9182 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
5178 9183 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
5179 9184 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
5180 9185 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
5181 9186 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
5182 9187 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
5183 9188 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
5184 9189 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
5185 9190 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
5186 9191 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
5187 9192 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
5188 9193 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
5189 9194 3.863424 TCCATTTCTGCGACGAGTAATTC 59.137 43.478 0.00 0.00 0.00 2.17
5239 9244 5.059161 TCAATGCATCCAGATGTAAGCTAC 58.941 41.667 0.00 0.00 40.80 3.58
5240 9245 4.970860 ATGCATCCAGATGTAAGCTACT 57.029 40.909 9.29 0.00 40.80 2.57
5241 9246 4.327982 TGCATCCAGATGTAAGCTACTC 57.672 45.455 9.29 0.00 40.80 2.59
5242 9247 3.070159 TGCATCCAGATGTAAGCTACTCC 59.930 47.826 9.29 0.00 40.80 3.85
5243 9248 3.556004 GCATCCAGATGTAAGCTACTCCC 60.556 52.174 9.29 0.00 40.80 4.30
5244 9249 3.689872 TCCAGATGTAAGCTACTCCCT 57.310 47.619 0.00 0.00 0.00 4.20
5245 9250 3.567397 TCCAGATGTAAGCTACTCCCTC 58.433 50.000 0.00 0.00 0.00 4.30
5246 9251 2.630580 CCAGATGTAAGCTACTCCCTCC 59.369 54.545 0.00 0.00 0.00 4.30
5247 9252 2.294791 CAGATGTAAGCTACTCCCTCCG 59.705 54.545 0.00 0.00 0.00 4.63
5248 9253 2.091775 AGATGTAAGCTACTCCCTCCGT 60.092 50.000 0.00 0.00 0.00 4.69
5249 9254 2.226962 TGTAAGCTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
5250 9255 2.097825 TGTAAGCTACTCCCTCCGTTC 58.902 52.381 0.00 0.00 0.00 3.95
5251 9256 1.408340 GTAAGCTACTCCCTCCGTTCC 59.592 57.143 0.00 0.00 0.00 3.62
5252 9257 0.041386 AAGCTACTCCCTCCGTTCCT 59.959 55.000 0.00 0.00 0.00 3.36
5253 9258 0.924823 AGCTACTCCCTCCGTTCCTA 59.075 55.000 0.00 0.00 0.00 2.94
5254 9259 1.287146 AGCTACTCCCTCCGTTCCTAA 59.713 52.381 0.00 0.00 0.00 2.69
5255 9260 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
5256 9261 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
5257 9262 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
5258 9263 4.527427 GCTACTCCCTCCGTTCCTAAATAT 59.473 45.833 0.00 0.00 0.00 1.28
5259 9264 5.713861 GCTACTCCCTCCGTTCCTAAATATA 59.286 44.000 0.00 0.00 0.00 0.86
5260 9265 6.210185 GCTACTCCCTCCGTTCCTAAATATAA 59.790 42.308 0.00 0.00 0.00 0.98
5261 9266 7.256083 GCTACTCCCTCCGTTCCTAAATATAAA 60.256 40.741 0.00 0.00 0.00 1.40
5262 9267 7.628501 ACTCCCTCCGTTCCTAAATATAAAT 57.371 36.000 0.00 0.00 0.00 1.40
5263 9268 8.042286 ACTCCCTCCGTTCCTAAATATAAATT 57.958 34.615 0.00 0.00 0.00 1.82
5264 9269 8.500238 ACTCCCTCCGTTCCTAAATATAAATTT 58.500 33.333 0.00 0.00 38.80 1.82
5265 9270 9.350951 CTCCCTCCGTTCCTAAATATAAATTTT 57.649 33.333 0.00 0.00 36.67 1.82
5266 9271 9.703677 TCCCTCCGTTCCTAAATATAAATTTTT 57.296 29.630 0.00 0.00 36.67 1.94
5267 9272 9.744468 CCCTCCGTTCCTAAATATAAATTTTTG 57.256 33.333 0.00 0.00 36.67 2.44
5294 9299 8.873215 AGAGATTTCACTATAAACCACATACG 57.127 34.615 0.00 0.00 0.00 3.06
5295 9300 7.926555 AGAGATTTCACTATAAACCACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
5296 9301 7.788026 AGATTTCACTATAAACCACATACGGA 58.212 34.615 0.00 0.00 0.00 4.69
5297 9302 8.429641 AGATTTCACTATAAACCACATACGGAT 58.570 33.333 0.00 0.00 0.00 4.18
5298 9303 9.701098 GATTTCACTATAAACCACATACGGATA 57.299 33.333 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.950116 ACGCGAGGCAGTATACTACC 59.050 55.000 15.93 13.61 0.00 3.18
102 206 2.887151 ATGACCTTCAAACCAGGGAG 57.113 50.000 0.00 0.00 35.46 4.30
103 207 4.625324 CGATTATGACCTTCAAACCAGGGA 60.625 45.833 0.00 0.00 35.46 4.20
104 208 3.627577 CGATTATGACCTTCAAACCAGGG 59.372 47.826 0.00 0.00 35.46 4.45
105 209 4.332819 GTCGATTATGACCTTCAAACCAGG 59.667 45.833 0.00 0.00 37.45 4.45
106 210 4.935205 TGTCGATTATGACCTTCAAACCAG 59.065 41.667 0.00 0.00 38.11 4.00
107 211 4.693566 GTGTCGATTATGACCTTCAAACCA 59.306 41.667 0.00 0.00 38.11 3.67
108 212 4.693566 TGTGTCGATTATGACCTTCAAACC 59.306 41.667 0.00 0.00 38.11 3.27
109 213 5.856126 TGTGTCGATTATGACCTTCAAAC 57.144 39.130 0.00 0.00 38.11 2.93
110 214 7.447374 AATTGTGTCGATTATGACCTTCAAA 57.553 32.000 0.00 0.00 38.11 2.69
111 215 7.447374 AAATTGTGTCGATTATGACCTTCAA 57.553 32.000 0.00 0.00 38.11 2.69
112 216 8.731275 ATAAATTGTGTCGATTATGACCTTCA 57.269 30.769 0.00 0.00 38.11 3.02
116 220 9.365311 CGTAAATAAATTGTGTCGATTATGACC 57.635 33.333 0.00 0.00 38.11 4.02
140 244 9.275398 TCCTGTACAAAAACTTACATATTTCGT 57.725 29.630 0.00 0.00 0.00 3.85
255 361 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
256 362 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
257 363 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
258 364 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
259 365 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
260 366 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
261 367 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
262 368 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
263 369 5.998363 AGAGTTGAGACACTTATTTTGGGAC 59.002 40.000 0.00 0.00 0.00 4.46
264 370 6.187727 AGAGTTGAGACACTTATTTTGGGA 57.812 37.500 0.00 0.00 0.00 4.37
265 371 7.162082 ACTAGAGTTGAGACACTTATTTTGGG 58.838 38.462 0.00 0.00 0.00 4.12
266 372 9.141400 GTACTAGAGTTGAGACACTTATTTTGG 57.859 37.037 0.00 0.00 0.00 3.28
267 373 9.692749 TGTACTAGAGTTGAGACACTTATTTTG 57.307 33.333 0.00 0.00 0.00 2.44
269 375 9.694137 GTTGTACTAGAGTTGAGACACTTATTT 57.306 33.333 0.00 0.00 0.00 1.40
270 376 9.080097 AGTTGTACTAGAGTTGAGACACTTATT 57.920 33.333 0.00 0.00 0.00 1.40
271 377 8.638629 AGTTGTACTAGAGTTGAGACACTTAT 57.361 34.615 0.00 0.00 0.00 1.73
272 378 8.461249 AAGTTGTACTAGAGTTGAGACACTTA 57.539 34.615 0.00 0.00 0.00 2.24
273 379 6.963083 AGTTGTACTAGAGTTGAGACACTT 57.037 37.500 0.00 0.00 0.00 3.16
274 380 6.963083 AAGTTGTACTAGAGTTGAGACACT 57.037 37.500 0.00 0.00 0.00 3.55
300 406 9.135189 TGTCTCAACTTTGTACTAACCTTAGTA 57.865 33.333 1.45 1.45 43.36 1.82
301 407 7.924947 GTGTCTCAACTTTGTACTAACCTTAGT 59.075 37.037 3.29 3.29 45.39 2.24
302 408 8.142551 AGTGTCTCAACTTTGTACTAACCTTAG 58.857 37.037 0.00 0.00 36.82 2.18
303 409 8.015185 AGTGTCTCAACTTTGTACTAACCTTA 57.985 34.615 0.00 0.00 0.00 2.69
304 410 6.885922 AGTGTCTCAACTTTGTACTAACCTT 58.114 36.000 0.00 0.00 0.00 3.50
305 411 6.481434 AGTGTCTCAACTTTGTACTAACCT 57.519 37.500 0.00 0.00 0.00 3.50
306 412 8.828688 ATAAGTGTCTCAACTTTGTACTAACC 57.171 34.615 0.00 0.00 40.77 2.85
310 416 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
311 417 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
312 418 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
313 419 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
314 420 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
315 421 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
316 422 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
317 423 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
318 424 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
319 425 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
320 426 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
321 427 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
322 428 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
323 429 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
324 430 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
325 431 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
326 432 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
327 433 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
328 434 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
329 435 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
330 436 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
331 437 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
332 438 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
333 439 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
334 440 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
335 441 2.158490 AGAATAGTACTCCCTCCGTCCC 60.158 54.545 0.00 0.00 0.00 4.46
336 442 3.226682 AGAATAGTACTCCCTCCGTCC 57.773 52.381 0.00 0.00 0.00 4.79
337 443 4.205587 TCAAGAATAGTACTCCCTCCGTC 58.794 47.826 0.00 0.00 0.00 4.79
338 444 4.246712 TCAAGAATAGTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
339 445 5.593679 TTTCAAGAATAGTACTCCCTCCG 57.406 43.478 0.00 0.00 0.00 4.63
340 446 6.708285 TGTTTTCAAGAATAGTACTCCCTCC 58.292 40.000 0.00 0.00 0.00 4.30
341 447 8.794335 ATTGTTTTCAAGAATAGTACTCCCTC 57.206 34.615 0.00 0.00 43.41 4.30
342 448 9.588096 AAATTGTTTTCAAGAATAGTACTCCCT 57.412 29.630 0.00 0.00 43.41 4.20
343 449 9.626045 CAAATTGTTTTCAAGAATAGTACTCCC 57.374 33.333 0.00 0.00 43.41 4.30
344 450 9.626045 CCAAATTGTTTTCAAGAATAGTACTCC 57.374 33.333 0.00 0.00 43.41 3.85
345 451 9.626045 CCCAAATTGTTTTCAAGAATAGTACTC 57.374 33.333 0.00 0.00 43.41 2.59
346 452 8.585018 CCCCAAATTGTTTTCAAGAATAGTACT 58.415 33.333 0.00 0.00 43.41 2.73
347 453 8.581578 TCCCCAAATTGTTTTCAAGAATAGTAC 58.418 33.333 0.00 0.00 43.41 2.73
348 454 8.581578 GTCCCCAAATTGTTTTCAAGAATAGTA 58.418 33.333 0.00 0.00 43.41 1.82
349 455 7.441836 GTCCCCAAATTGTTTTCAAGAATAGT 58.558 34.615 0.00 0.00 43.41 2.12
350 456 6.873605 GGTCCCCAAATTGTTTTCAAGAATAG 59.126 38.462 0.00 0.00 43.41 1.73
351 457 6.517529 CGGTCCCCAAATTGTTTTCAAGAATA 60.518 38.462 0.00 0.00 43.41 1.75
352 458 5.620206 GGTCCCCAAATTGTTTTCAAGAAT 58.380 37.500 0.00 0.00 43.41 2.40
513 714 3.067320 TCTCATCTCAGTCGCATACCTTG 59.933 47.826 0.00 0.00 0.00 3.61
596 797 6.784031 TCTCTACTGATATGCTATCCTGTGA 58.216 40.000 0.00 0.00 0.00 3.58
742 943 8.001292 ACCCCTAGTACTATAAATGTAACGAGT 58.999 37.037 2.33 0.00 0.00 4.18
830 1031 7.116805 GGAGCATTGAAACTAACCAAAAGAATG 59.883 37.037 0.00 0.00 0.00 2.67
865 1066 6.440328 TCCAAGAATAAAAGGCTGGCTTAAAT 59.560 34.615 17.33 10.52 0.00 1.40
978 1179 2.498726 GCCTCCTTCAGCTCTCCG 59.501 66.667 0.00 0.00 0.00 4.63
1014 1215 0.953727 GCTGATGTTCAAGGTGCACA 59.046 50.000 20.43 0.00 0.00 4.57
1020 1221 0.809385 CCTGCTGCTGATGTTCAAGG 59.191 55.000 8.20 0.00 0.00 3.61
1231 1438 0.668535 TGTCTGTCTGTCTGTCACGG 59.331 55.000 0.00 0.00 0.00 4.94
1232 1439 1.604278 TCTGTCTGTCTGTCTGTCACG 59.396 52.381 0.00 0.00 0.00 4.35
1234 1441 1.611006 GCTCTGTCTGTCTGTCTGTCA 59.389 52.381 0.00 0.00 0.00 3.58
1236 1443 1.697284 TGCTCTGTCTGTCTGTCTGT 58.303 50.000 0.00 0.00 0.00 3.41
1237 1444 2.799412 GTTTGCTCTGTCTGTCTGTCTG 59.201 50.000 0.00 0.00 0.00 3.51
1238 1445 2.697751 AGTTTGCTCTGTCTGTCTGTCT 59.302 45.455 0.00 0.00 0.00 3.41
1239 1446 2.799412 CAGTTTGCTCTGTCTGTCTGTC 59.201 50.000 0.00 0.00 0.00 3.51
1240 1447 2.432146 TCAGTTTGCTCTGTCTGTCTGT 59.568 45.455 0.00 0.00 36.85 3.41
1241 1448 2.799412 GTCAGTTTGCTCTGTCTGTCTG 59.201 50.000 0.00 0.00 36.85 3.51
1242 1449 2.697751 AGTCAGTTTGCTCTGTCTGTCT 59.302 45.455 0.00 0.00 33.93 3.41
1243 1450 2.799412 CAGTCAGTTTGCTCTGTCTGTC 59.201 50.000 16.10 4.72 42.26 3.51
1244 1451 2.432146 TCAGTCAGTTTGCTCTGTCTGT 59.568 45.455 20.00 1.20 45.00 3.41
1245 1452 2.799412 GTCAGTCAGTTTGCTCTGTCTG 59.201 50.000 17.26 17.26 45.58 3.51
1246 1453 2.697751 AGTCAGTCAGTTTGCTCTGTCT 59.302 45.455 0.00 0.00 36.85 3.41
1392 1608 1.296392 CCTGTCCTTGATGCCGTCA 59.704 57.895 0.00 0.00 34.25 4.35
1516 1732 5.729510 AGGTTTCAGAGAATGAGCTTACTC 58.270 41.667 0.00 0.00 43.76 2.59
1564 1784 8.463607 TCTTGTTACTTCACTTTACAAAAAGGG 58.536 33.333 3.19 0.00 45.87 3.95
1565 1785 9.849166 TTCTTGTTACTTCACTTTACAAAAAGG 57.151 29.630 3.19 0.00 45.39 3.11
1569 1789 9.834628 CAGTTTCTTGTTACTTCACTTTACAAA 57.165 29.630 0.00 0.00 0.00 2.83
1571 1791 8.447833 CACAGTTTCTTGTTACTTCACTTTACA 58.552 33.333 0.00 0.00 0.00 2.41
1577 1799 5.123344 ACACCACAGTTTCTTGTTACTTCAC 59.877 40.000 0.00 0.00 0.00 3.18
1683 1937 2.816083 TAATTGGACACCGCCGCG 60.816 61.111 5.59 5.59 0.00 6.46
1718 1972 2.511145 CCCTCTTGAGCTGCGAGC 60.511 66.667 0.00 0.47 42.84 5.03
1785 2039 0.543749 GGATGGTGAGGGTGAAGAGG 59.456 60.000 0.00 0.00 0.00 3.69
1827 2081 0.034089 CTGGGGTCAAGGTTCCATCC 60.034 60.000 0.00 0.00 0.00 3.51
2016 2350 5.689961 CCGGGTAAAAGAAACAATCAAGTTG 59.310 40.000 0.00 0.00 43.64 3.16
2018 2352 4.261867 GCCGGGTAAAAGAAACAATCAAGT 60.262 41.667 2.18 0.00 0.00 3.16
2065 2399 3.980775 GCTGCACAACGAACAAATGTTAT 59.019 39.130 0.00 0.00 38.56 1.89
2475 2843 2.107950 TGTTGAAATGGCCTAGGTCG 57.892 50.000 9.28 0.00 0.00 4.79
2484 2852 2.173519 ACAGCCCTGATGTTGAAATGG 58.826 47.619 1.69 0.00 0.00 3.16
2581 2970 6.320164 TGCAAGTGTAAGTACAAGAACCATTT 59.680 34.615 0.00 0.00 38.04 2.32
3095 3495 5.278858 GCCTTATCCTTCGCTAGCTACTTAA 60.279 44.000 13.93 2.89 0.00 1.85
3098 3498 2.559231 GCCTTATCCTTCGCTAGCTACT 59.441 50.000 13.93 0.00 0.00 2.57
3118 3518 6.144402 CCTCAGTGAAACACATAAACAAATGC 59.856 38.462 4.75 0.00 41.43 3.56
3127 3527 6.998074 AGATGAAAACCTCAGTGAAACACATA 59.002 34.615 4.75 0.00 41.43 2.29
3128 3528 5.829924 AGATGAAAACCTCAGTGAAACACAT 59.170 36.000 4.75 0.00 41.43 3.21
3282 3691 0.386478 AGCCGAACACGACGTAGAAC 60.386 55.000 0.00 0.00 0.00 3.01
3354 3763 2.918712 CGAAGCAGATGGGAAGGTAT 57.081 50.000 0.00 0.00 0.00 2.73
3765 4174 3.603532 GATGAACATCTTGAGCCTGTCA 58.396 45.455 7.45 0.00 35.04 3.58
4221 4645 4.096532 AGAATCATCACGTCACATACTCGT 59.903 41.667 0.00 0.00 38.34 4.18
4233 4657 0.376152 GCTGCACCAGAATCATCACG 59.624 55.000 0.00 0.00 32.44 4.35
4291 4722 4.261909 CCTGCATGCTTCCTTATTGAATCC 60.262 45.833 20.33 0.00 0.00 3.01
4313 4744 4.828296 CCCCCATCTGCCTGCACC 62.828 72.222 0.00 0.00 0.00 5.01
4324 4755 0.254784 AAAATCCCTCCCTCCCCCAT 60.255 55.000 0.00 0.00 0.00 4.00
4401 4834 8.247562 GCAATATCACCCTTACATTTTAACACA 58.752 33.333 0.00 0.00 0.00 3.72
4490 6202 1.299976 GTGCTCCTTGGTAGTGGGG 59.700 63.158 0.00 0.00 0.00 4.96
4503 6216 3.558418 TGTAAAAGAAGTTGACGGTGCTC 59.442 43.478 0.00 0.00 0.00 4.26
4504 6217 3.537580 TGTAAAAGAAGTTGACGGTGCT 58.462 40.909 0.00 0.00 0.00 4.40
4507 6220 6.293698 AGGTAATGTAAAAGAAGTTGACGGT 58.706 36.000 0.00 0.00 0.00 4.83
4509 6222 7.170998 ACAGAGGTAATGTAAAAGAAGTTGACG 59.829 37.037 0.00 0.00 0.00 4.35
4518 6231 8.622948 AAAGGAGAACAGAGGTAATGTAAAAG 57.377 34.615 0.00 0.00 0.00 2.27
4540 6253 7.532884 GCACCAAACGAAAACACTATAGTAAAG 59.467 37.037 4.74 0.00 0.00 1.85
4546 6259 5.950758 ATGCACCAAACGAAAACACTATA 57.049 34.783 0.00 0.00 0.00 1.31
4547 6260 4.846779 ATGCACCAAACGAAAACACTAT 57.153 36.364 0.00 0.00 0.00 2.12
4587 6300 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4588 6301 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4589 6302 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4620 6333 9.332301 GCTTCGTATGTAGTCTATAGTGAAATC 57.668 37.037 0.00 0.00 0.00 2.17
4621 6334 8.847196 TGCTTCGTATGTAGTCTATAGTGAAAT 58.153 33.333 0.00 0.00 0.00 2.17
4622 6335 8.217131 TGCTTCGTATGTAGTCTATAGTGAAA 57.783 34.615 0.00 0.00 0.00 2.69
4623 6336 7.797038 TGCTTCGTATGTAGTCTATAGTGAA 57.203 36.000 0.00 0.00 0.00 3.18
4624 6337 7.797038 TTGCTTCGTATGTAGTCTATAGTGA 57.203 36.000 0.00 0.00 0.00 3.41
4625 6338 8.851960 TTTTGCTTCGTATGTAGTCTATAGTG 57.148 34.615 0.00 0.00 0.00 2.74
4626 6339 9.464714 CATTTTGCTTCGTATGTAGTCTATAGT 57.535 33.333 0.00 0.00 0.00 2.12
4627 6340 9.678941 TCATTTTGCTTCGTATGTAGTCTATAG 57.321 33.333 0.00 0.00 0.00 1.31
4629 6342 8.942338 TTCATTTTGCTTCGTATGTAGTCTAT 57.058 30.769 0.00 0.00 0.00 1.98
4630 6343 8.817100 CATTCATTTTGCTTCGTATGTAGTCTA 58.183 33.333 0.00 0.00 0.00 2.59
4631 6344 7.549134 TCATTCATTTTGCTTCGTATGTAGTCT 59.451 33.333 0.00 0.00 0.00 3.24
4632 6345 7.684670 TCATTCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
4633 6346 7.609760 TCATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
4634 6347 7.429340 GGTTCATTCATTTTGCTTCGTATGTAG 59.571 37.037 0.00 0.00 0.00 2.74
4635 6348 7.120579 AGGTTCATTCATTTTGCTTCGTATGTA 59.879 33.333 0.00 0.00 0.00 2.29
4636 6349 6.071952 AGGTTCATTCATTTTGCTTCGTATGT 60.072 34.615 0.00 0.00 0.00 2.29
4637 6350 6.324819 AGGTTCATTCATTTTGCTTCGTATG 58.675 36.000 0.00 0.00 0.00 2.39
4638 6351 6.515272 AGGTTCATTCATTTTGCTTCGTAT 57.485 33.333 0.00 0.00 0.00 3.06
4639 6352 5.957842 AGGTTCATTCATTTTGCTTCGTA 57.042 34.783 0.00 0.00 0.00 3.43
4640 6353 4.853924 AGGTTCATTCATTTTGCTTCGT 57.146 36.364 0.00 0.00 0.00 3.85
4641 6354 7.697691 AGTATAGGTTCATTCATTTTGCTTCG 58.302 34.615 0.00 0.00 0.00 3.79
4642 6355 8.131731 GGAGTATAGGTTCATTCATTTTGCTTC 58.868 37.037 0.00 0.00 0.00 3.86
4643 6356 7.615365 TGGAGTATAGGTTCATTCATTTTGCTT 59.385 33.333 0.00 0.00 0.00 3.91
4644 6357 7.118723 TGGAGTATAGGTTCATTCATTTTGCT 58.881 34.615 0.00 0.00 0.00 3.91
4645 6358 7.333528 TGGAGTATAGGTTCATTCATTTTGC 57.666 36.000 0.00 0.00 0.00 3.68
4648 6361 9.753674 TCTTTTGGAGTATAGGTTCATTCATTT 57.246 29.630 0.00 0.00 0.00 2.32
4649 6362 9.178758 GTCTTTTGGAGTATAGGTTCATTCATT 57.821 33.333 0.00 0.00 0.00 2.57
4650 6363 7.495934 CGTCTTTTGGAGTATAGGTTCATTCAT 59.504 37.037 0.00 0.00 0.00 2.57
4651 6364 6.816640 CGTCTTTTGGAGTATAGGTTCATTCA 59.183 38.462 0.00 0.00 0.00 2.57
4652 6365 6.817140 ACGTCTTTTGGAGTATAGGTTCATTC 59.183 38.462 0.00 0.00 0.00 2.67
4653 6366 6.708285 ACGTCTTTTGGAGTATAGGTTCATT 58.292 36.000 0.00 0.00 0.00 2.57
4654 6367 6.154706 AGACGTCTTTTGGAGTATAGGTTCAT 59.845 38.462 13.58 0.00 0.00 2.57
4655 6368 5.479375 AGACGTCTTTTGGAGTATAGGTTCA 59.521 40.000 13.58 0.00 0.00 3.18
4656 6369 5.963594 AGACGTCTTTTGGAGTATAGGTTC 58.036 41.667 13.58 0.00 0.00 3.62
4657 6370 5.997384 AGACGTCTTTTGGAGTATAGGTT 57.003 39.130 13.58 0.00 0.00 3.50
4658 6371 8.937207 ATATAGACGTCTTTTGGAGTATAGGT 57.063 34.615 25.44 0.00 0.00 3.08
4663 6376 9.570468 AGATGTATATAGACGTCTTTTGGAGTA 57.430 33.333 25.44 2.65 41.92 2.59
4664 6377 8.353684 CAGATGTATATAGACGTCTTTTGGAGT 58.646 37.037 25.44 5.86 41.92 3.85
4665 6378 8.568794 TCAGATGTATATAGACGTCTTTTGGAG 58.431 37.037 25.44 7.57 41.92 3.86
4666 6379 8.459911 TCAGATGTATATAGACGTCTTTTGGA 57.540 34.615 25.44 5.24 41.92 3.53
4667 6380 9.698309 ATTCAGATGTATATAGACGTCTTTTGG 57.302 33.333 25.44 8.49 41.92 3.28
4672 6385 9.727859 ACTACATTCAGATGTATATAGACGTCT 57.272 33.333 23.66 23.66 45.20 4.18
4673 6386 9.976255 GACTACATTCAGATGTATATAGACGTC 57.024 37.037 7.70 7.70 45.20 4.34
4674 6387 9.727859 AGACTACATTCAGATGTATATAGACGT 57.272 33.333 0.00 0.00 45.20 4.34
4719 6432 6.208007 CCCTCCGTTCCTAAATGTAAGTTTTT 59.792 38.462 0.00 0.00 0.00 1.94
4720 6433 5.708697 CCCTCCGTTCCTAAATGTAAGTTTT 59.291 40.000 0.00 0.00 0.00 2.43
4721 6434 5.013391 TCCCTCCGTTCCTAAATGTAAGTTT 59.987 40.000 0.00 0.00 0.00 2.66
4722 6435 4.533311 TCCCTCCGTTCCTAAATGTAAGTT 59.467 41.667 0.00 0.00 0.00 2.66
4723 6436 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
4724 6437 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
4725 6438 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
4726 6439 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
4727 6440 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
4728 6441 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
4729 6442 8.731591 TTTATATACTCCCTCCGTTCCTAAAT 57.268 34.615 0.00 0.00 0.00 1.40
4730 6443 8.731591 ATTTATATACTCCCTCCGTTCCTAAA 57.268 34.615 0.00 0.00 0.00 1.85
4731 6444 7.951806 TGATTTATATACTCCCTCCGTTCCTAA 59.048 37.037 0.00 0.00 0.00 2.69
4732 6445 7.472741 TGATTTATATACTCCCTCCGTTCCTA 58.527 38.462 0.00 0.00 0.00 2.94
4733 6446 6.320518 TGATTTATATACTCCCTCCGTTCCT 58.679 40.000 0.00 0.00 0.00 3.36
4734 6447 6.600882 TGATTTATATACTCCCTCCGTTCC 57.399 41.667 0.00 0.00 0.00 3.62
4735 6448 8.968969 AGTATGATTTATATACTCCCTCCGTTC 58.031 37.037 0.00 0.00 36.84 3.95
4736 6449 8.750298 CAGTATGATTTATATACTCCCTCCGTT 58.250 37.037 0.00 0.00 38.85 4.44
4737 6450 8.114102 TCAGTATGATTTATATACTCCCTCCGT 58.886 37.037 0.00 0.00 42.56 4.69
4738 6451 8.521170 TCAGTATGATTTATATACTCCCTCCG 57.479 38.462 0.00 0.00 42.56 4.63
4791 6504 5.880054 AAAAATGTAGTAGCATCGCAACT 57.120 34.783 0.00 0.00 0.00 3.16
4881 6601 4.560128 TGAATCTCTGAACGAGGAAACAG 58.440 43.478 0.00 0.00 40.30 3.16
4901 6621 1.135431 GTTGTGTGTGCAGCAGTTTGA 60.135 47.619 0.00 0.00 0.00 2.69
5008 9013 3.310774 ACTCTGCACACGATTATTGCATC 59.689 43.478 0.00 0.00 44.94 3.91
5009 9014 3.064408 CACTCTGCACACGATTATTGCAT 59.936 43.478 0.00 0.00 44.94 3.96
5013 9018 3.002791 CCACACTCTGCACACGATTATT 58.997 45.455 0.00 0.00 0.00 1.40
5052 9057 4.298626 AGCCAACCAGGAGTATCTATGAA 58.701 43.478 0.00 0.00 41.22 2.57
5087 9092 6.700520 GGAACGAAGGGAGTAGTATTTATGTG 59.299 42.308 0.00 0.00 0.00 3.21
5104 9109 5.779806 ACGATGAGTAATTTGGAACGAAG 57.220 39.130 0.00 0.00 0.00 3.79
5106 9111 6.198650 TCTACGATGAGTAATTTGGAACGA 57.801 37.500 0.00 0.00 34.45 3.85
5110 9115 9.613428 ATTCATTTCTACGATGAGTAATTTGGA 57.387 29.630 0.00 0.00 35.17 3.53
5153 9158 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
5154 9159 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
5156 9161 6.393990 GTCGCAGAAATGGATGTATCTAGAT 58.606 40.000 10.73 10.73 39.69 1.98
5160 9165 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
5161 9166 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
5162 9167 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
5163 9168 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
5164 9169 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
5165 9170 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
5166 9171 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
5168 9173 3.301835 CGAATTACTCGTCGCAGAAATGG 60.302 47.826 0.00 0.00 42.89 3.16
5169 9174 3.301835 CCGAATTACTCGTCGCAGAAATG 60.302 47.826 0.00 0.00 46.65 2.32
5170 9175 2.858344 CCGAATTACTCGTCGCAGAAAT 59.142 45.455 0.00 0.00 46.65 2.17
5171 9176 2.095110 TCCGAATTACTCGTCGCAGAAA 60.095 45.455 0.00 0.00 46.65 2.52
5172 9177 1.469703 TCCGAATTACTCGTCGCAGAA 59.530 47.619 0.00 0.00 46.65 3.02
5173 9178 1.089112 TCCGAATTACTCGTCGCAGA 58.911 50.000 0.00 0.00 46.65 4.26
5174 9179 1.582502 GTTCCGAATTACTCGTCGCAG 59.417 52.381 0.00 0.00 46.65 5.18
5175 9180 1.621107 GTTCCGAATTACTCGTCGCA 58.379 50.000 0.00 0.00 46.65 5.10
5176 9181 0.564767 CGTTCCGAATTACTCGTCGC 59.435 55.000 0.00 0.00 46.65 5.19
5177 9182 2.163826 TCGTTCCGAATTACTCGTCG 57.836 50.000 0.00 0.00 46.65 5.12
5178 9183 2.850647 CCTTCGTTCCGAATTACTCGTC 59.149 50.000 0.00 0.00 46.65 4.20
5179 9184 2.416431 CCCTTCGTTCCGAATTACTCGT 60.416 50.000 0.00 0.00 46.65 4.18
5180 9185 2.159338 TCCCTTCGTTCCGAATTACTCG 60.159 50.000 0.00 0.00 44.85 4.18
5181 9186 3.119209 ACTCCCTTCGTTCCGAATTACTC 60.119 47.826 0.00 0.00 44.85 2.59
5182 9187 2.830321 ACTCCCTTCGTTCCGAATTACT 59.170 45.455 0.00 0.00 44.85 2.24
5183 9188 3.242549 ACTCCCTTCGTTCCGAATTAC 57.757 47.619 0.00 0.00 44.85 1.89
5184 9189 4.019174 AGTACTCCCTTCGTTCCGAATTA 58.981 43.478 0.00 0.00 44.85 1.40
5185 9190 2.830321 AGTACTCCCTTCGTTCCGAATT 59.170 45.455 0.00 0.00 44.85 2.17
5186 9191 2.454538 AGTACTCCCTTCGTTCCGAAT 58.545 47.619 0.00 0.00 44.85 3.34
5187 9192 1.915141 AGTACTCCCTTCGTTCCGAA 58.085 50.000 0.00 0.00 43.75 4.30
5188 9193 1.915141 AAGTACTCCCTTCGTTCCGA 58.085 50.000 0.00 0.00 0.00 4.55
5189 9194 2.738013 AAAGTACTCCCTTCGTTCCG 57.262 50.000 0.00 0.00 0.00 4.30
5190 9195 6.404708 AGATTAAAAGTACTCCCTTCGTTCC 58.595 40.000 0.00 0.00 0.00 3.62
5191 9196 9.247126 GATAGATTAAAAGTACTCCCTTCGTTC 57.753 37.037 0.00 0.00 0.00 3.95
5192 9197 8.755977 TGATAGATTAAAAGTACTCCCTTCGTT 58.244 33.333 0.00 0.00 0.00 3.85
5193 9198 8.302515 TGATAGATTAAAAGTACTCCCTTCGT 57.697 34.615 0.00 0.00 0.00 3.85
5194 9199 9.765795 ATTGATAGATTAAAAGTACTCCCTTCG 57.234 33.333 0.00 0.00 0.00 3.79
5196 9201 9.343539 GCATTGATAGATTAAAAGTACTCCCTT 57.656 33.333 0.00 0.00 0.00 3.95
5225 9230 2.630580 GGAGGGAGTAGCTTACATCTGG 59.369 54.545 0.00 0.00 0.00 3.86
5239 9244 8.919777 AAATTTATATTTAGGAACGGAGGGAG 57.080 34.615 0.00 0.00 32.25 4.30
5240 9245 9.703677 AAAAATTTATATTTAGGAACGGAGGGA 57.296 29.630 0.00 0.00 32.85 4.20
5241 9246 9.744468 CAAAAATTTATATTTAGGAACGGAGGG 57.256 33.333 0.00 0.00 32.85 4.30
5268 9273 9.961265 CGTATGTGGTTTATAGTGAAATCTCTA 57.039 33.333 0.00 0.00 0.00 2.43
5269 9274 7.926555 CCGTATGTGGTTTATAGTGAAATCTCT 59.073 37.037 0.00 0.00 0.00 3.10
5270 9275 7.924412 TCCGTATGTGGTTTATAGTGAAATCTC 59.076 37.037 0.00 0.00 0.00 2.75
5271 9276 7.788026 TCCGTATGTGGTTTATAGTGAAATCT 58.212 34.615 0.00 0.00 0.00 2.40
5272 9277 8.603242 ATCCGTATGTGGTTTATAGTGAAATC 57.397 34.615 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.