Multiple sequence alignment - TraesCS2D01G286700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G286700 chr2D 100.000 2608 0 0 1 2608 366501229 366498622 0.000000e+00 4817.0
1 TraesCS2D01G286700 chr2D 100.000 89 0 0 1759 1847 188886172 188886084 5.770000e-37 165.0
2 TraesCS2D01G286700 chr2D 97.872 94 1 1 1754 1847 642838541 642838449 7.470000e-36 161.0
3 TraesCS2D01G286700 chr2B 95.611 1572 46 10 198 1764 435159090 435157537 0.000000e+00 2499.0
4 TraesCS2D01G286700 chr2B 98.170 765 14 0 1844 2608 435157540 435156776 0.000000e+00 1336.0
5 TraesCS2D01G286700 chr2B 94.253 87 5 0 1 87 435159288 435159202 1.630000e-27 134.0
6 TraesCS2D01G286700 chr2A 96.594 1057 26 3 709 1764 495960169 495959122 0.000000e+00 1744.0
7 TraesCS2D01G286700 chr2A 97.778 765 17 0 1844 2608 495959125 495958361 0.000000e+00 1319.0
8 TraesCS2D01G286700 chr2A 89.205 352 24 5 198 536 495961207 495960857 6.670000e-116 427.0
9 TraesCS2D01G286700 chr2A 91.457 199 17 0 1 199 495961435 495961237 9.200000e-70 274.0
10 TraesCS2D01G286700 chr2A 93.636 110 5 2 610 719 495960597 495960490 2.080000e-36 163.0
11 TraesCS2D01G286700 chr2A 95.699 93 4 0 610 702 495960702 495960610 1.620000e-32 150.0
12 TraesCS2D01G286700 chr5D 85.282 496 73 0 2108 2603 402203920 402203425 1.790000e-141 512.0
13 TraesCS2D01G286700 chr5B 85.312 497 71 2 2108 2603 481143271 481142776 1.790000e-141 512.0
14 TraesCS2D01G286700 chr5A 85.111 497 72 2 2108 2603 507967960 507967465 8.330000e-140 507.0
15 TraesCS2D01G286700 chr5A 93.333 60 3 1 94 153 503926933 503926875 1.290000e-13 87.9
16 TraesCS2D01G286700 chr5A 92.982 57 3 1 98 153 520671687 520671743 5.980000e-12 82.4
17 TraesCS2D01G286700 chr5A 83.750 80 10 3 95 173 473202111 473202034 3.600000e-09 73.1
18 TraesCS2D01G286700 chr6B 100.000 89 0 0 1761 1849 713175883 713175795 5.770000e-37 165.0
19 TraesCS2D01G286700 chr6B 92.982 57 4 0 97 153 717037575 717037519 1.660000e-12 84.2
20 TraesCS2D01G286700 chr6B 91.379 58 4 1 96 153 717009519 717009463 7.740000e-11 78.7
21 TraesCS2D01G286700 chr7A 97.872 94 2 0 1754 1847 332924654 332924561 2.080000e-36 163.0
22 TraesCS2D01G286700 chr7A 91.525 59 2 2 97 153 642427885 642427828 7.740000e-11 78.7
23 TraesCS2D01G286700 chr7B 100.000 87 0 0 1760 1846 743467882 743467968 7.470000e-36 161.0
24 TraesCS2D01G286700 chr6D 94.286 105 4 2 1759 1862 34808919 34809022 2.690000e-35 159.0
25 TraesCS2D01G286700 chr6D 93.269 104 6 1 1745 1847 199144944 199144841 4.500000e-33 152.0
26 TraesCS2D01G286700 chr6D 96.552 87 3 0 1760 1846 11067853 11067939 7.520000e-31 145.0
27 TraesCS2D01G286700 chr6D 92.982 57 3 1 97 153 27176615 27176560 5.980000e-12 82.4
28 TraesCS2D01G286700 chr6D 94.231 52 1 2 87 137 49270628 49270678 7.740000e-11 78.7
29 TraesCS2D01G286700 chr3D 95.745 94 4 0 1759 1852 505557396 505557303 4.500000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G286700 chr2D 366498622 366501229 2607 True 4817.0 4817 100.000000 1 2608 1 chr2D.!!$R2 2607
1 TraesCS2D01G286700 chr2B 435156776 435159288 2512 True 1323.0 2499 96.011333 1 2608 3 chr2B.!!$R1 2607
2 TraesCS2D01G286700 chr2A 495958361 495961435 3074 True 679.5 1744 94.061500 1 2608 6 chr2A.!!$R1 2607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.249489 AGTCAAGCTTCGTCGCAACT 60.249 50.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 2467 1.204146 TGGCAAGATCTGGTACTCCC 58.796 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.249489 AGTCAAGCTTCGTCGCAACT 60.249 50.000 0.00 0.00 0.00 3.16
80 81 4.883585 TGATGTATTTCATGCTCCCACTTC 59.116 41.667 0.00 0.00 36.83 3.01
88 89 1.335132 TGCTCCCACTTCCCGATACC 61.335 60.000 0.00 0.00 0.00 2.73
154 249 7.038154 GCCTGAAGCATATATTACCAAAACA 57.962 36.000 0.00 0.00 42.97 2.83
155 250 7.661040 GCCTGAAGCATATATTACCAAAACAT 58.339 34.615 0.00 0.00 42.97 2.71
156 251 8.143835 GCCTGAAGCATATATTACCAAAACATT 58.856 33.333 0.00 0.00 42.97 2.71
157 252 9.467258 CCTGAAGCATATATTACCAAAACATTG 57.533 33.333 0.00 0.00 0.00 2.82
185 280 9.965902 AACCATTACAAAGAAGAGATCATAGTT 57.034 29.630 0.00 0.00 0.00 2.24
186 281 9.965902 ACCATTACAAAGAAGAGATCATAGTTT 57.034 29.630 0.00 0.00 0.00 2.66
192 287 9.512588 ACAAAGAAGAGATCATAGTTTCATTGT 57.487 29.630 0.00 4.42 35.87 2.71
195 290 8.503458 AGAAGAGATCATAGTTTCATTGTTGG 57.497 34.615 0.00 0.00 0.00 3.77
196 291 7.555554 AGAAGAGATCATAGTTTCATTGTTGGG 59.444 37.037 0.00 0.00 0.00 4.12
243 338 2.125229 CAGCAGCAGACCGAGCAT 60.125 61.111 0.00 0.00 0.00 3.79
288 383 3.512033 TCGGAAAAACCTTGGTGTTTG 57.488 42.857 12.24 0.45 38.41 2.93
309 404 3.179048 GTGCGTTTCCAAATATTCCAGC 58.821 45.455 0.00 0.00 0.00 4.85
336 431 3.877508 CCCAAAATAACCGAGGATCTGAC 59.122 47.826 0.00 0.00 0.00 3.51
376 471 4.028509 CACAAACGAAAGACGCTTCAAAAG 60.029 41.667 0.00 0.00 46.94 2.27
399 494 5.879223 AGAAACATTGCTTCCTCAGATACTG 59.121 40.000 0.00 0.00 0.00 2.74
428 533 3.686691 GCAGGAGAGTATTGGCCATCTTT 60.687 47.826 6.09 0.59 0.00 2.52
539 681 5.168569 TCTCACTTAGCCTCATGTAAAACG 58.831 41.667 0.00 0.00 0.00 3.60
540 682 4.890088 TCACTTAGCCTCATGTAAAACGT 58.110 39.130 0.00 0.00 0.00 3.99
544 686 6.588756 CACTTAGCCTCATGTAAAACGTCTTA 59.411 38.462 0.00 0.00 0.00 2.10
545 687 7.277981 CACTTAGCCTCATGTAAAACGTCTTAT 59.722 37.037 0.00 0.00 0.00 1.73
547 689 9.477484 CTTAGCCTCATGTAAAACGTCTTATAT 57.523 33.333 0.00 0.00 0.00 0.86
548 690 9.826574 TTAGCCTCATGTAAAACGTCTTATATT 57.173 29.630 0.00 0.00 0.00 1.28
576 718 1.994399 ATATTGTGGGACAGGGGGAA 58.006 50.000 0.00 0.00 41.80 3.97
626 920 4.980573 ACATTTTCTAGCTAACCACCACA 58.019 39.130 0.00 0.00 0.00 4.17
680 974 3.916172 CCAAATGCATGTCTTTGTTCGAG 59.084 43.478 0.00 2.97 31.83 4.04
821 1444 2.046023 TTGCCCTGCTCACATCCG 60.046 61.111 0.00 0.00 0.00 4.18
880 1504 3.190535 CACCTTGGTTATTTAAGCGCAGT 59.809 43.478 11.47 0.00 36.53 4.40
939 1563 2.757099 CTGCATTCACCCCCAGGC 60.757 66.667 0.00 0.00 36.11 4.85
1032 1656 2.223829 CCGTATCCTTTCAGTGATCGCT 60.224 50.000 2.02 2.02 0.00 4.93
1146 1770 0.796312 CCGGGTTCGAGACAAATGTG 59.204 55.000 0.00 0.00 39.00 3.21
1451 2079 2.839486 ACTGCAACGAGATTCAGGAA 57.161 45.000 0.00 0.00 0.00 3.36
1574 2202 1.376942 CTGCCCTGACCTGCTCAAG 60.377 63.158 0.00 0.00 0.00 3.02
1764 2392 4.891992 ACTTACAGCCTTGTGATGTACT 57.108 40.909 0.00 0.00 38.23 2.73
1765 2393 4.822026 ACTTACAGCCTTGTGATGTACTC 58.178 43.478 0.00 0.00 38.23 2.59
1766 2394 2.770164 ACAGCCTTGTGATGTACTCC 57.230 50.000 0.00 0.00 35.83 3.85
1767 2395 1.279271 ACAGCCTTGTGATGTACTCCC 59.721 52.381 0.00 0.00 35.83 4.30
1768 2396 1.556911 CAGCCTTGTGATGTACTCCCT 59.443 52.381 0.00 0.00 0.00 4.20
1769 2397 1.834263 AGCCTTGTGATGTACTCCCTC 59.166 52.381 0.00 0.00 0.00 4.30
1770 2398 1.134371 GCCTTGTGATGTACTCCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
1771 2399 1.137086 CCTTGTGATGTACTCCCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
1772 2400 1.825474 CTTGTGATGTACTCCCTCCGT 59.175 52.381 0.00 0.00 0.00 4.69
1773 2401 2.812836 TGTGATGTACTCCCTCCGTA 57.187 50.000 0.00 0.00 0.00 4.02
1774 2402 3.090210 TGTGATGTACTCCCTCCGTAA 57.910 47.619 0.00 0.00 0.00 3.18
1775 2403 3.433343 TGTGATGTACTCCCTCCGTAAA 58.567 45.455 0.00 0.00 0.00 2.01
1776 2404 3.194116 TGTGATGTACTCCCTCCGTAAAC 59.806 47.826 0.00 0.00 0.00 2.01
1777 2405 3.446516 GTGATGTACTCCCTCCGTAAACT 59.553 47.826 0.00 0.00 0.00 2.66
1778 2406 4.641989 GTGATGTACTCCCTCCGTAAACTA 59.358 45.833 0.00 0.00 0.00 2.24
1779 2407 5.126061 GTGATGTACTCCCTCCGTAAACTAA 59.874 44.000 0.00 0.00 0.00 2.24
1780 2408 5.895534 TGATGTACTCCCTCCGTAAACTAAT 59.104 40.000 0.00 0.00 0.00 1.73
1781 2409 7.013655 GTGATGTACTCCCTCCGTAAACTAATA 59.986 40.741 0.00 0.00 0.00 0.98
1782 2410 7.727186 TGATGTACTCCCTCCGTAAACTAATAT 59.273 37.037 0.00 0.00 0.00 1.28
1783 2411 9.236006 GATGTACTCCCTCCGTAAACTAATATA 57.764 37.037 0.00 0.00 0.00 0.86
1784 2412 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
1785 2413 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
1786 2414 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
1787 2415 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1788 2416 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1789 2417 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
1790 2418 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
1791 2419 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
1792 2420 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
1793 2421 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
1794 2422 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
1795 2423 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
1807 2435 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
1808 2436 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
1809 2437 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
1810 2438 8.954350 AGAGCGTTTAGATCACTACTTTAGTAA 58.046 33.333 0.00 0.00 37.82 2.24
1811 2439 9.733219 GAGCGTTTAGATCACTACTTTAGTAAT 57.267 33.333 0.00 0.00 37.23 1.89
1812 2440 9.733219 AGCGTTTAGATCACTACTTTAGTAATC 57.267 33.333 0.00 0.00 37.23 1.75
1813 2441 9.733219 GCGTTTAGATCACTACTTTAGTAATCT 57.267 33.333 4.72 4.72 37.23 2.40
1842 2470 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
1843 2471 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
1844 2472 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2136 2764 2.325661 TCAGATCTCCAACAGGTCCA 57.674 50.000 0.00 0.00 31.58 4.02
2376 3004 3.604582 GACATCCTTCTCCTCCACAAAG 58.395 50.000 0.00 0.00 0.00 2.77
2378 3006 3.008485 ACATCCTTCTCCTCCACAAAGAC 59.992 47.826 0.00 0.00 0.00 3.01
2502 3130 3.384532 CATGGTGCCCAGCCCAAC 61.385 66.667 0.41 0.00 36.75 3.77
2538 3166 2.670210 CGCACGCTGCATGTCTTCA 61.670 57.895 0.00 0.00 45.36 3.02
2556 3184 1.837439 TCATAGTAAGTGGCAGGGTGG 59.163 52.381 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.497161 AAGGTATCGGGAAGTGGGAG 58.503 55.000 0.00 0.00 0.00 4.30
108 141 2.357760 GTAAGCCCGCCGTTGACA 60.358 61.111 0.00 0.00 0.00 3.58
159 254 9.965902 AACTATGATCTCTTCTTTGTAATGGTT 57.034 29.630 0.00 0.00 0.00 3.67
166 261 9.512588 ACAATGAAACTATGATCTCTTCTTTGT 57.487 29.630 14.16 14.16 0.00 2.83
169 264 8.954350 CCAACAATGAAACTATGATCTCTTCTT 58.046 33.333 0.00 0.00 0.00 2.52
170 265 7.555554 CCCAACAATGAAACTATGATCTCTTCT 59.444 37.037 0.00 0.00 0.00 2.85
171 266 7.201767 CCCCAACAATGAAACTATGATCTCTTC 60.202 40.741 0.00 0.00 0.00 2.87
172 267 6.604795 CCCCAACAATGAAACTATGATCTCTT 59.395 38.462 0.00 0.00 0.00 2.85
173 268 6.125029 CCCCAACAATGAAACTATGATCTCT 58.875 40.000 0.00 0.00 0.00 3.10
174 269 5.221126 GCCCCAACAATGAAACTATGATCTC 60.221 44.000 0.00 0.00 0.00 2.75
175 270 4.646492 GCCCCAACAATGAAACTATGATCT 59.354 41.667 0.00 0.00 0.00 2.75
176 271 4.402155 TGCCCCAACAATGAAACTATGATC 59.598 41.667 0.00 0.00 0.00 2.92
177 272 4.352009 TGCCCCAACAATGAAACTATGAT 58.648 39.130 0.00 0.00 0.00 2.45
178 273 3.772387 TGCCCCAACAATGAAACTATGA 58.228 40.909 0.00 0.00 0.00 2.15
179 274 4.244862 GTTGCCCCAACAATGAAACTATG 58.755 43.478 3.40 0.00 43.09 2.23
180 275 3.056891 CGTTGCCCCAACAATGAAACTAT 60.057 43.478 8.59 0.00 43.70 2.12
181 276 2.294791 CGTTGCCCCAACAATGAAACTA 59.705 45.455 8.59 0.00 43.70 2.24
182 277 1.068434 CGTTGCCCCAACAATGAAACT 59.932 47.619 8.59 0.00 43.70 2.66
183 278 1.496934 CGTTGCCCCAACAATGAAAC 58.503 50.000 8.59 0.00 43.70 2.78
184 279 0.390860 CCGTTGCCCCAACAATGAAA 59.609 50.000 8.59 0.00 43.70 2.69
185 280 2.045280 CCGTTGCCCCAACAATGAA 58.955 52.632 8.59 0.00 43.70 2.57
186 281 2.569354 GCCGTTGCCCCAACAATGA 61.569 57.895 8.59 0.00 43.70 2.57
187 282 2.048316 GCCGTTGCCCCAACAATG 60.048 61.111 8.59 0.00 43.70 2.82
188 283 1.836604 AAGCCGTTGCCCCAACAAT 60.837 52.632 8.59 0.00 43.70 2.71
189 284 2.443016 AAGCCGTTGCCCCAACAA 60.443 55.556 8.59 0.00 43.70 2.83
190 285 3.222855 CAAGCCGTTGCCCCAACA 61.223 61.111 8.59 0.00 43.70 3.33
191 286 2.909965 TCAAGCCGTTGCCCCAAC 60.910 61.111 0.00 0.00 40.54 3.77
192 287 2.909965 GTCAAGCCGTTGCCCCAA 60.910 61.111 0.00 0.00 38.69 4.12
193 288 4.966787 GGTCAAGCCGTTGCCCCA 62.967 66.667 0.00 0.00 38.69 4.96
194 289 4.966787 TGGTCAAGCCGTTGCCCC 62.967 66.667 0.00 0.00 41.21 5.80
195 290 3.365265 CTGGTCAAGCCGTTGCCC 61.365 66.667 0.00 0.00 41.21 5.36
196 291 2.281484 TCTGGTCAAGCCGTTGCC 60.281 61.111 0.00 0.00 41.21 4.52
242 337 3.763557 ACCCAAGGAATCCACATCAAT 57.236 42.857 0.61 0.00 0.00 2.57
243 338 3.541242 AACCCAAGGAATCCACATCAA 57.459 42.857 0.61 0.00 0.00 2.57
288 383 3.179048 GCTGGAATATTTGGAAACGCAC 58.821 45.455 0.00 0.00 0.00 5.34
309 404 2.158871 TCCTCGGTTATTTTGGGATCCG 60.159 50.000 5.45 0.00 39.40 4.18
336 431 5.396362 CGTTTGTGAGCACTGACAAATAAAG 59.604 40.000 16.52 7.17 42.43 1.85
367 462 5.052481 AGGAAGCAATGTTTCTTTTGAAGC 58.948 37.500 9.57 0.00 39.88 3.86
376 471 5.645497 ACAGTATCTGAGGAAGCAATGTTTC 59.355 40.000 0.98 0.98 35.18 2.78
399 494 2.287909 CCAATACTCTCCTGCTCGCTAC 60.288 54.545 0.00 0.00 0.00 3.58
428 533 0.396435 AGTGATCGGCAGTGGAACAA 59.604 50.000 0.00 0.00 44.16 2.83
544 686 9.706691 CTGTCCCACAATATAAGACGTTAATAT 57.293 33.333 0.00 0.00 0.00 1.28
545 687 8.145767 CCTGTCCCACAATATAAGACGTTAATA 58.854 37.037 0.00 0.00 0.00 0.98
547 689 6.342906 CCTGTCCCACAATATAAGACGTTAA 58.657 40.000 0.00 0.00 0.00 2.01
548 690 5.163385 CCCTGTCCCACAATATAAGACGTTA 60.163 44.000 0.00 0.00 0.00 3.18
569 711 6.848562 AAAGTCTAATGACATATTCCCCCT 57.151 37.500 0.00 0.00 45.20 4.79
576 718 7.201145 ACTCGCGTAAAAGTCTAATGACATAT 58.799 34.615 5.77 0.00 45.20 1.78
626 920 4.382577 GCTCTGCTAGAAAAGGCTTCTAGT 60.383 45.833 19.43 1.93 45.96 2.57
680 974 4.443063 GCGTTTCATTGTTACCCTTGTTTC 59.557 41.667 0.00 0.00 0.00 2.78
821 1444 0.657840 GTTGCGCATGGATGTAGGAC 59.342 55.000 12.75 0.00 0.00 3.85
880 1504 0.676466 CGGTTTCTGCATGCCACCTA 60.676 55.000 16.68 0.00 0.00 3.08
1014 1638 3.430790 CCACAGCGATCACTGAAAGGATA 60.431 47.826 17.46 0.00 40.25 2.59
1032 1656 1.971167 GGCAAAGATGGCGACCACA 60.971 57.895 0.50 0.00 42.73 4.17
1146 1770 3.737355 GCTTACCCTTGATGTACTCGGTC 60.737 52.174 0.00 0.00 0.00 4.79
1574 2202 5.706916 TCATCAGTAGTAAGGTTGAACGTC 58.293 41.667 0.00 0.00 0.00 4.34
1764 2392 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
1765 2393 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
1766 2394 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
1767 2395 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1768 2396 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
1769 2397 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
1781 2409 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
1782 2410 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
1783 2411 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
1784 2412 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
1785 2413 9.733219 ATTACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
1786 2414 9.733219 GATTACTAAAGTAGTGATCTAAACGCT 57.267 33.333 11.11 0.00 44.10 5.07
1816 2444 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
1817 2445 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
1818 2446 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1822 2450 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
1823 2451 9.584008 CTGGTACTCCCTCTGTAAACTAATATA 57.416 37.037 0.00 0.00 0.00 0.86
1824 2452 8.287350 TCTGGTACTCCCTCTGTAAACTAATAT 58.713 37.037 0.00 0.00 0.00 1.28
1825 2453 7.645942 TCTGGTACTCCCTCTGTAAACTAATA 58.354 38.462 0.00 0.00 0.00 0.98
1826 2454 6.500336 TCTGGTACTCCCTCTGTAAACTAAT 58.500 40.000 0.00 0.00 0.00 1.73
1827 2455 5.895807 TCTGGTACTCCCTCTGTAAACTAA 58.104 41.667 0.00 0.00 0.00 2.24
1828 2456 5.525454 TCTGGTACTCCCTCTGTAAACTA 57.475 43.478 0.00 0.00 0.00 2.24
1829 2457 4.399483 TCTGGTACTCCCTCTGTAAACT 57.601 45.455 0.00 0.00 0.00 2.66
1830 2458 4.957327 AGATCTGGTACTCCCTCTGTAAAC 59.043 45.833 0.00 0.00 0.00 2.01
1831 2459 5.208294 AGATCTGGTACTCCCTCTGTAAA 57.792 43.478 0.00 0.00 0.00 2.01
1832 2460 4.883021 AGATCTGGTACTCCCTCTGTAA 57.117 45.455 0.00 0.00 0.00 2.41
1833 2461 4.537751 CAAGATCTGGTACTCCCTCTGTA 58.462 47.826 0.00 0.00 0.00 2.74
1834 2462 3.370104 CAAGATCTGGTACTCCCTCTGT 58.630 50.000 0.00 0.00 0.00 3.41
1835 2463 2.102252 GCAAGATCTGGTACTCCCTCTG 59.898 54.545 0.00 0.00 0.00 3.35
1836 2464 2.393646 GCAAGATCTGGTACTCCCTCT 58.606 52.381 0.00 0.00 0.00 3.69
1837 2465 1.414550 GGCAAGATCTGGTACTCCCTC 59.585 57.143 0.00 0.00 0.00 4.30
1838 2466 1.273838 TGGCAAGATCTGGTACTCCCT 60.274 52.381 0.00 0.00 0.00 4.20
1839 2467 1.204146 TGGCAAGATCTGGTACTCCC 58.796 55.000 0.00 0.00 0.00 4.30
1840 2468 2.546795 CGATGGCAAGATCTGGTACTCC 60.547 54.545 0.00 0.00 0.00 3.85
1841 2469 2.362397 TCGATGGCAAGATCTGGTACTC 59.638 50.000 0.00 0.00 0.00 2.59
1842 2470 2.388735 TCGATGGCAAGATCTGGTACT 58.611 47.619 0.00 0.00 0.00 2.73
1843 2471 2.890808 TCGATGGCAAGATCTGGTAC 57.109 50.000 0.00 0.00 0.00 3.34
1844 2472 3.643320 AGAATCGATGGCAAGATCTGGTA 59.357 43.478 0.00 0.00 0.00 3.25
1845 2473 2.437281 AGAATCGATGGCAAGATCTGGT 59.563 45.455 0.00 0.00 0.00 4.00
1846 2474 3.123157 AGAATCGATGGCAAGATCTGG 57.877 47.619 0.00 0.00 0.00 3.86
2136 2764 0.982704 AGCATCTCAACTGGACTGCT 59.017 50.000 0.00 0.00 35.26 4.24
2376 3004 2.497273 CCCATGGGAAGAAATTGGTGTC 59.503 50.000 28.27 0.00 37.50 3.67
2378 3006 2.818921 TCCCATGGGAAGAAATTGGTG 58.181 47.619 32.09 0.00 42.05 4.17
2502 3130 2.743928 GTCTTCTGCCTGTGCCCG 60.744 66.667 0.00 0.00 36.33 6.13
2538 3166 1.838077 GACCACCCTGCCACTTACTAT 59.162 52.381 0.00 0.00 0.00 2.12
2556 3184 2.875933 TCTGTTTGACATTTCCACCGAC 59.124 45.455 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.