Multiple sequence alignment - TraesCS2D01G286300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G286300 chr2D 100.000 3185 0 0 1 3185 365777377 365780561 0.000000e+00 5882
1 TraesCS2D01G286300 chr2B 96.625 2993 67 12 193 3167 434098820 434101796 0.000000e+00 4937
2 TraesCS2D01G286300 chr2B 91.860 86 7 0 110 195 434098706 434098791 1.550000e-23 121
3 TraesCS2D01G286300 chr2A 96.593 2994 62 16 193 3164 493831751 493834726 0.000000e+00 4927


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G286300 chr2D 365777377 365780561 3184 False 5882 5882 100.0000 1 3185 1 chr2D.!!$F1 3184
1 TraesCS2D01G286300 chr2B 434098706 434101796 3090 False 2529 4937 94.2425 110 3167 2 chr2B.!!$F1 3057
2 TraesCS2D01G286300 chr2A 493831751 493834726 2975 False 4927 4927 96.5930 193 3164 1 chr2A.!!$F1 2971

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.039618 ACCCACCGGAGCATTTGATT 59.960 50.0 9.46 0.0 0.0 2.57 F
102 103 0.166814 AAAGCTCGCGTTCATCAAGC 59.833 50.0 5.77 5.7 0.0 4.01 F
605 653 0.180406 AGCTCGTCTCCTCTCTCTCC 59.820 60.0 0.00 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1217 1265 2.024729 CGCGTGCTATGCTCTCGA 59.975 61.111 0.0 0.0 33.18 4.04 R
1271 1319 2.222508 CGACGTGTTTGGATGATTCGAC 60.223 50.000 0.0 0.0 0.00 4.20 R
2392 2447 1.614413 TCACCCATTACCCGCAAAAAC 59.386 47.619 0.0 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.048470 GGTCACCCCTCCCTTGGC 62.048 72.222 0.00 0.00 0.00 4.52
30 31 3.256960 GTCACCCCTCCCTTGGCA 61.257 66.667 0.00 0.00 0.00 4.92
31 32 2.935481 TCACCCCTCCCTTGGCAG 60.935 66.667 0.00 0.00 0.00 4.85
32 33 4.052518 CACCCCTCCCTTGGCAGG 62.053 72.222 0.00 0.00 40.45 4.85
33 34 4.285790 ACCCCTCCCTTGGCAGGA 62.286 66.667 0.00 0.00 44.19 3.86
37 38 3.004951 CTCCCTTGGCAGGAGCAT 58.995 61.111 9.59 0.00 44.30 3.79
38 39 1.153005 CTCCCTTGGCAGGAGCATC 60.153 63.158 9.59 0.00 44.30 3.91
50 51 2.472614 GAGCATCCATCCCATCCCT 58.527 57.895 0.00 0.00 0.00 4.20
51 52 0.327591 GAGCATCCATCCCATCCCTC 59.672 60.000 0.00 0.00 0.00 4.30
52 53 1.138863 AGCATCCATCCCATCCCTCC 61.139 60.000 0.00 0.00 0.00 4.30
53 54 1.681666 CATCCATCCCATCCCTCCG 59.318 63.158 0.00 0.00 0.00 4.63
54 55 1.539869 ATCCATCCCATCCCTCCGG 60.540 63.158 0.00 0.00 0.00 5.14
55 56 3.252284 CCATCCCATCCCTCCGGG 61.252 72.222 0.00 0.00 46.11 5.73
56 57 3.958860 CATCCCATCCCTCCGGGC 61.959 72.222 0.00 0.00 43.94 6.13
57 58 4.192997 ATCCCATCCCTCCGGGCT 62.193 66.667 0.00 0.00 43.94 5.19
61 62 4.864334 CATCCCTCCGGGCTGCAC 62.864 72.222 0.00 0.00 43.94 4.57
75 76 2.676471 GCACCCACCGGAGCATTT 60.676 61.111 9.46 0.00 44.53 2.32
76 77 2.993471 GCACCCACCGGAGCATTTG 61.993 63.158 9.46 0.00 44.53 2.32
77 78 1.303236 CACCCACCGGAGCATTTGA 60.303 57.895 9.46 0.00 0.00 2.69
78 79 0.680921 CACCCACCGGAGCATTTGAT 60.681 55.000 9.46 0.00 0.00 2.57
79 80 0.039618 ACCCACCGGAGCATTTGATT 59.960 50.000 9.46 0.00 0.00 2.57
80 81 1.185315 CCCACCGGAGCATTTGATTT 58.815 50.000 9.46 0.00 0.00 2.17
81 82 1.135024 CCCACCGGAGCATTTGATTTG 60.135 52.381 9.46 0.00 0.00 2.32
82 83 1.818060 CCACCGGAGCATTTGATTTGA 59.182 47.619 9.46 0.00 0.00 2.69
83 84 2.230992 CCACCGGAGCATTTGATTTGAA 59.769 45.455 9.46 0.00 0.00 2.69
84 85 3.305950 CCACCGGAGCATTTGATTTGAAA 60.306 43.478 9.46 0.00 0.00 2.69
85 86 4.305769 CACCGGAGCATTTGATTTGAAAA 58.694 39.130 9.46 0.00 0.00 2.29
86 87 4.386652 CACCGGAGCATTTGATTTGAAAAG 59.613 41.667 9.46 0.00 0.00 2.27
87 88 3.368843 CCGGAGCATTTGATTTGAAAAGC 59.631 43.478 0.00 0.00 0.00 3.51
88 89 4.240096 CGGAGCATTTGATTTGAAAAGCT 58.760 39.130 0.00 0.00 0.00 3.74
89 90 4.325472 CGGAGCATTTGATTTGAAAAGCTC 59.675 41.667 12.50 12.50 44.69 4.09
90 91 4.325472 GGAGCATTTGATTTGAAAAGCTCG 59.675 41.667 13.83 0.00 45.95 5.03
91 92 3.676646 AGCATTTGATTTGAAAAGCTCGC 59.323 39.130 0.00 0.00 0.00 5.03
92 93 3.480825 GCATTTGATTTGAAAAGCTCGCG 60.481 43.478 0.00 0.00 0.00 5.87
93 94 3.347958 TTTGATTTGAAAAGCTCGCGT 57.652 38.095 5.77 0.00 0.00 6.01
94 95 3.347958 TTGATTTGAAAAGCTCGCGTT 57.652 38.095 5.77 0.00 0.00 4.84
95 96 2.916111 TGATTTGAAAAGCTCGCGTTC 58.084 42.857 5.77 2.26 0.00 3.95
96 97 2.289274 TGATTTGAAAAGCTCGCGTTCA 59.711 40.909 5.77 5.38 0.00 3.18
97 98 3.058293 TGATTTGAAAAGCTCGCGTTCAT 60.058 39.130 5.77 0.00 0.00 2.57
98 99 2.594529 TTGAAAAGCTCGCGTTCATC 57.405 45.000 5.77 0.00 0.00 2.92
99 100 1.507562 TGAAAAGCTCGCGTTCATCA 58.492 45.000 5.77 1.94 0.00 3.07
100 101 1.870402 TGAAAAGCTCGCGTTCATCAA 59.130 42.857 5.77 0.00 0.00 2.57
101 102 2.096268 TGAAAAGCTCGCGTTCATCAAG 60.096 45.455 5.77 0.00 0.00 3.02
102 103 0.166814 AAAGCTCGCGTTCATCAAGC 59.833 50.000 5.77 5.70 0.00 4.01
103 104 0.671781 AAGCTCGCGTTCATCAAGCT 60.672 50.000 10.09 10.09 44.84 3.74
104 105 1.080995 AGCTCGCGTTCATCAAGCTC 61.081 55.000 10.09 0.00 38.96 4.09
105 106 2.002127 CTCGCGTTCATCAAGCTCC 58.998 57.895 5.77 0.00 0.00 4.70
106 107 0.737367 CTCGCGTTCATCAAGCTCCA 60.737 55.000 5.77 0.00 0.00 3.86
107 108 1.014044 TCGCGTTCATCAAGCTCCAC 61.014 55.000 5.77 0.00 0.00 4.02
108 109 1.796796 GCGTTCATCAAGCTCCACC 59.203 57.895 0.00 0.00 0.00 4.61
127 128 5.488919 TCCACCTTGGAGTTTATCTTCTCAT 59.511 40.000 0.00 0.00 42.67 2.90
128 129 5.587844 CCACCTTGGAGTTTATCTTCTCATG 59.412 44.000 0.00 0.00 40.96 3.07
163 164 4.322057 AGCCAACCAAATATCTTGACCT 57.678 40.909 0.84 0.00 0.00 3.85
165 166 4.016444 GCCAACCAAATATCTTGACCTGA 58.984 43.478 0.84 0.00 0.00 3.86
175 176 2.972348 TCTTGACCTGAAGTGGTACCT 58.028 47.619 14.36 0.00 41.00 3.08
182 183 3.165875 CCTGAAGTGGTACCTGAGAAGA 58.834 50.000 14.36 0.00 0.00 2.87
194 226 4.392940 ACCTGAGAAGACCAAATGTTGAG 58.607 43.478 0.00 0.00 0.00 3.02
423 466 5.047802 TCCAGACTCCAAAATGCTGAAATTC 60.048 40.000 0.00 0.00 0.00 2.17
483 531 3.241552 CGAAATACTCCGTACAAAGTGCG 60.242 47.826 7.26 0.62 41.00 5.34
554 602 5.540337 ACAACAGACTTCTCCTTCTATCACA 59.460 40.000 0.00 0.00 0.00 3.58
604 652 1.139058 AGAGCTCGTCTCCTCTCTCTC 59.861 57.143 8.37 0.00 42.90 3.20
605 653 0.180406 AGCTCGTCTCCTCTCTCTCC 59.820 60.000 0.00 0.00 0.00 3.71
606 654 0.818040 GCTCGTCTCCTCTCTCTCCC 60.818 65.000 0.00 0.00 0.00 4.30
607 655 0.837272 CTCGTCTCCTCTCTCTCCCT 59.163 60.000 0.00 0.00 0.00 4.20
869 917 1.671901 TATCACCACCTCATCGCGCA 61.672 55.000 8.75 0.00 0.00 6.09
1155 1203 7.626452 GCTGAGGAACAAGGTAATCAACAATAC 60.626 40.741 0.00 0.00 0.00 1.89
1171 1219 5.746990 ACAATACCTACTAGCATCCATCC 57.253 43.478 0.00 0.00 0.00 3.51
1271 1319 0.171007 ATCGCAGCCATTTGGAAACG 59.829 50.000 0.00 0.24 37.39 3.60
1420 1468 1.515519 TCGTGCACGAAGATACGCC 60.516 57.895 37.68 0.00 46.30 5.68
1827 1882 2.792674 CAGATTGCAGCAACAACAACAG 59.207 45.455 10.85 0.00 31.03 3.16
1829 1884 1.993542 TTGCAGCAACAACAACAGTG 58.006 45.000 2.83 0.00 0.00 3.66
2053 2108 2.044352 TCATCCGAGTGAGCCCGA 60.044 61.111 0.00 0.00 0.00 5.14
2294 2349 3.005367 GGTGGGTAAGTGTTGGTCAATTG 59.995 47.826 0.00 0.00 35.86 2.32
2343 2398 5.982890 TCTTCTGATCCCCAAATTTGTTC 57.017 39.130 16.73 8.59 0.00 3.18
2351 2406 8.378115 TGATCCCCAAATTTGTTCATCTAAAT 57.622 30.769 16.73 0.00 0.00 1.40
2502 2558 7.812669 CCTTTGTTCCTTGCTTAATCGTTTATT 59.187 33.333 0.00 0.00 0.00 1.40
2652 2708 9.424659 GAACATTGTTTGCAAAATTAAACTCAG 57.575 29.630 14.67 0.00 38.21 3.35
3002 3060 9.925545 TCCATGAGTACTGGTACTAATTACTAA 57.074 33.333 12.61 0.00 45.63 2.24
3003 3061 9.962783 CCATGAGTACTGGTACTAATTACTAAC 57.037 37.037 12.61 0.00 45.63 2.34
3004 3062 9.962783 CATGAGTACTGGTACTAATTACTAACC 57.037 37.037 12.61 0.00 45.63 2.85
3127 3189 6.640907 GTGATATATAGTGACACGAACATGCA 59.359 38.462 0.00 0.00 0.00 3.96
3156 3218 5.807520 ACACGTGCATATCTTCAGTTTCTAG 59.192 40.000 17.22 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.256960 TGCCAAGGGAGGGGTGAC 61.257 66.667 0.00 0.00 0.00 3.67
14 15 2.935481 CTGCCAAGGGAGGGGTGA 60.935 66.667 0.00 0.00 0.00 4.02
21 22 2.683465 GGATGCTCCTGCCAAGGGA 61.683 63.158 0.00 0.00 44.62 4.20
22 23 2.123982 GGATGCTCCTGCCAAGGG 60.124 66.667 0.00 0.00 44.62 3.95
23 24 0.822532 GATGGATGCTCCTGCCAAGG 60.823 60.000 0.00 0.00 46.06 3.61
24 25 0.822532 GGATGGATGCTCCTGCCAAG 60.823 60.000 0.00 0.00 37.46 3.61
25 26 1.228228 GGATGGATGCTCCTGCCAA 59.772 57.895 0.00 0.00 37.46 4.52
26 27 2.760378 GGGATGGATGCTCCTGCCA 61.760 63.158 12.30 0.00 37.46 4.92
27 28 2.077842 ATGGGATGGATGCTCCTGCC 62.078 60.000 4.21 5.11 37.46 4.85
28 29 0.608582 GATGGGATGGATGCTCCTGC 60.609 60.000 4.21 0.00 37.46 4.85
29 30 0.037877 GGATGGGATGGATGCTCCTG 59.962 60.000 4.21 0.00 37.46 3.86
30 31 1.138863 GGGATGGGATGGATGCTCCT 61.139 60.000 4.21 0.00 37.46 3.69
31 32 1.138863 AGGGATGGGATGGATGCTCC 61.139 60.000 0.00 0.00 36.96 4.70
32 33 0.327591 GAGGGATGGGATGGATGCTC 59.672 60.000 0.00 0.00 0.00 4.26
33 34 1.138863 GGAGGGATGGGATGGATGCT 61.139 60.000 0.00 0.00 0.00 3.79
34 35 1.381851 GGAGGGATGGGATGGATGC 59.618 63.158 0.00 0.00 0.00 3.91
35 36 1.681666 CGGAGGGATGGGATGGATG 59.318 63.158 0.00 0.00 0.00 3.51
36 37 4.239991 CGGAGGGATGGGATGGAT 57.760 61.111 0.00 0.00 0.00 3.41
59 60 0.680921 ATCAAATGCTCCGGTGGGTG 60.681 55.000 0.00 0.00 33.83 4.61
60 61 0.039618 AATCAAATGCTCCGGTGGGT 59.960 50.000 0.00 0.00 33.83 4.51
61 62 1.135024 CAAATCAAATGCTCCGGTGGG 60.135 52.381 0.00 0.00 0.00 4.61
62 63 1.818060 TCAAATCAAATGCTCCGGTGG 59.182 47.619 0.00 0.00 0.00 4.61
63 64 3.574284 TTCAAATCAAATGCTCCGGTG 57.426 42.857 0.00 0.00 0.00 4.94
64 65 4.559153 CTTTTCAAATCAAATGCTCCGGT 58.441 39.130 0.00 0.00 0.00 5.28
65 66 3.368843 GCTTTTCAAATCAAATGCTCCGG 59.631 43.478 0.00 0.00 34.90 5.14
66 67 4.240096 AGCTTTTCAAATCAAATGCTCCG 58.760 39.130 1.59 0.00 40.80 4.63
69 70 3.676646 GCGAGCTTTTCAAATCAAATGCT 59.323 39.130 6.13 6.13 44.94 3.79
70 71 3.480825 CGCGAGCTTTTCAAATCAAATGC 60.481 43.478 0.00 0.00 36.92 3.56
71 72 3.670055 ACGCGAGCTTTTCAAATCAAATG 59.330 39.130 15.93 0.00 0.00 2.32
72 73 3.900941 ACGCGAGCTTTTCAAATCAAAT 58.099 36.364 15.93 0.00 0.00 2.32
73 74 3.347958 ACGCGAGCTTTTCAAATCAAA 57.652 38.095 15.93 0.00 0.00 2.69
74 75 3.242903 TGAACGCGAGCTTTTCAAATCAA 60.243 39.130 15.93 0.00 0.00 2.57
75 76 2.289274 TGAACGCGAGCTTTTCAAATCA 59.711 40.909 15.93 0.00 0.00 2.57
76 77 2.916111 TGAACGCGAGCTTTTCAAATC 58.084 42.857 15.93 0.00 0.00 2.17
77 78 3.058293 TGATGAACGCGAGCTTTTCAAAT 60.058 39.130 15.93 0.00 33.13 2.32
78 79 2.289274 TGATGAACGCGAGCTTTTCAAA 59.711 40.909 15.93 2.08 33.13 2.69
79 80 1.870402 TGATGAACGCGAGCTTTTCAA 59.130 42.857 15.93 0.00 33.13 2.69
80 81 1.507562 TGATGAACGCGAGCTTTTCA 58.492 45.000 15.93 12.81 33.89 2.69
81 82 2.499896 CTTGATGAACGCGAGCTTTTC 58.500 47.619 15.93 6.24 0.00 2.29
82 83 1.400242 GCTTGATGAACGCGAGCTTTT 60.400 47.619 15.93 0.00 0.00 2.27
83 84 0.166814 GCTTGATGAACGCGAGCTTT 59.833 50.000 15.93 0.00 0.00 3.51
84 85 0.671781 AGCTTGATGAACGCGAGCTT 60.672 50.000 15.93 0.00 40.55 3.74
85 86 1.079543 AGCTTGATGAACGCGAGCT 60.080 52.632 15.93 12.37 38.76 4.09
86 87 1.346538 GAGCTTGATGAACGCGAGC 59.653 57.895 15.93 9.76 0.00 5.03
87 88 0.737367 TGGAGCTTGATGAACGCGAG 60.737 55.000 15.93 0.00 0.00 5.03
88 89 1.014044 GTGGAGCTTGATGAACGCGA 61.014 55.000 15.93 0.00 0.00 5.87
89 90 1.421485 GTGGAGCTTGATGAACGCG 59.579 57.895 3.53 3.53 0.00 6.01
90 91 0.674895 AGGTGGAGCTTGATGAACGC 60.675 55.000 0.00 0.00 0.00 4.84
91 92 1.466167 CAAGGTGGAGCTTGATGAACG 59.534 52.381 12.28 0.00 32.75 3.95
92 93 1.815003 CCAAGGTGGAGCTTGATGAAC 59.185 52.381 18.02 0.00 40.96 3.18
93 94 1.704628 TCCAAGGTGGAGCTTGATGAA 59.295 47.619 18.02 0.90 42.67 2.57
94 95 1.361204 TCCAAGGTGGAGCTTGATGA 58.639 50.000 18.02 6.76 42.67 2.92
95 96 3.963733 TCCAAGGTGGAGCTTGATG 57.036 52.632 18.02 4.72 42.67 3.07
103 104 4.844085 TGAGAAGATAAACTCCAAGGTGGA 59.156 41.667 0.00 0.00 45.98 4.02
104 105 5.165961 TGAGAAGATAAACTCCAAGGTGG 57.834 43.478 0.00 0.00 39.43 4.61
105 106 5.587844 CCATGAGAAGATAAACTCCAAGGTG 59.412 44.000 0.00 0.00 32.84 4.00
106 107 5.488919 TCCATGAGAAGATAAACTCCAAGGT 59.511 40.000 0.00 0.00 32.84 3.50
107 108 5.994250 TCCATGAGAAGATAAACTCCAAGG 58.006 41.667 0.00 0.00 32.84 3.61
108 109 7.772292 TCATTCCATGAGAAGATAAACTCCAAG 59.228 37.037 0.00 0.00 38.07 3.61
127 128 4.018506 TGGTTGGCTTCTATTCTCATTCCA 60.019 41.667 0.00 0.00 0.00 3.53
128 129 4.526970 TGGTTGGCTTCTATTCTCATTCC 58.473 43.478 0.00 0.00 0.00 3.01
163 164 2.897969 GGTCTTCTCAGGTACCACTTCA 59.102 50.000 15.94 0.00 32.04 3.02
165 166 2.972348 TGGTCTTCTCAGGTACCACTT 58.028 47.619 15.94 0.00 37.09 3.16
175 176 4.090761 AGCTCAACATTTGGTCTTCTCA 57.909 40.909 0.00 0.00 0.00 3.27
182 183 8.121305 TGACATATTTTAGCTCAACATTTGGT 57.879 30.769 0.00 0.00 0.00 3.67
483 531 0.523519 GTTCTAGCACCTTTGGCTGC 59.476 55.000 0.00 0.00 42.62 5.25
554 602 4.080863 CGCCTTTAATGATAGCTAGGGGAT 60.081 45.833 6.17 0.00 37.78 3.85
604 652 1.400530 ATAAGAACGCGGAGGGAGGG 61.401 60.000 12.47 0.00 46.37 4.30
605 653 0.032267 GATAAGAACGCGGAGGGAGG 59.968 60.000 12.47 0.00 46.37 4.30
606 654 0.744874 TGATAAGAACGCGGAGGGAG 59.255 55.000 12.47 0.00 46.37 4.30
607 655 0.744874 CTGATAAGAACGCGGAGGGA 59.255 55.000 12.47 0.00 46.37 4.20
820 868 3.052082 CACCTGCTCGTGCTTGGG 61.052 66.667 20.04 16.33 40.48 4.12
910 958 4.864334 GGCCACATCTGCTCCCGG 62.864 72.222 0.00 0.00 0.00 5.73
1155 1203 5.163364 GGATACATGGATGGATGCTAGTAGG 60.163 48.000 0.00 0.00 36.61 3.18
1217 1265 2.024729 CGCGTGCTATGCTCTCGA 59.975 61.111 0.00 0.00 33.18 4.04
1271 1319 2.222508 CGACGTGTTTGGATGATTCGAC 60.223 50.000 0.00 0.00 0.00 4.20
2070 2125 2.287608 CGTTGTGCCTGAGCTCGATATA 60.288 50.000 9.64 0.00 40.80 0.86
2294 2349 6.073602 GGAAAGAAATGTTCACCAGCAAAATC 60.074 38.462 0.00 0.00 0.00 2.17
2392 2447 1.614413 TCACCCATTACCCGCAAAAAC 59.386 47.619 0.00 0.00 0.00 2.43
2461 2516 3.049344 ACAAAGGTCTCCCTCTGTTCTT 58.951 45.455 0.00 0.00 39.03 2.52
2480 2535 7.209471 ACAATAAACGATTAAGCAAGGAACA 57.791 32.000 0.00 0.00 0.00 3.18
2502 2558 8.964476 ACACTTCATAAAAGAGAAGAGAAACA 57.036 30.769 8.95 0.00 42.95 2.83
3001 3059 3.003689 CGATGACTTCAGCAAACTTGGTT 59.996 43.478 0.00 0.00 36.65 3.67
3002 3060 2.549754 CGATGACTTCAGCAAACTTGGT 59.450 45.455 0.00 0.00 39.91 3.67
3003 3061 2.666619 GCGATGACTTCAGCAAACTTGG 60.667 50.000 0.00 0.00 31.58 3.61
3004 3062 2.225019 AGCGATGACTTCAGCAAACTTG 59.775 45.455 0.00 0.00 31.58 3.16
3108 3170 5.043248 CAGATGCATGTTCGTGTCACTATA 58.957 41.667 2.46 0.00 0.00 1.31
3109 3171 3.867493 CAGATGCATGTTCGTGTCACTAT 59.133 43.478 2.46 0.00 0.00 2.12
3110 3172 3.056891 TCAGATGCATGTTCGTGTCACTA 60.057 43.478 2.46 0.00 0.00 2.74
3111 3173 2.071540 CAGATGCATGTTCGTGTCACT 58.928 47.619 2.46 0.00 0.00 3.41
3112 3174 2.068519 TCAGATGCATGTTCGTGTCAC 58.931 47.619 2.46 0.00 0.00 3.67
3127 3189 4.142071 ACTGAAGATATGCACGTGTCAGAT 60.142 41.667 27.06 21.92 35.93 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.