Multiple sequence alignment - TraesCS2D01G286200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G286200 chr2D 100.000 8068 0 0 1 8068 365359978 365368045 0.000000e+00 14899.0
1 TraesCS2D01G286200 chr2D 100.000 65 0 0 7690 7754 365367603 365367667 3.950000e-23 121.0
2 TraesCS2D01G286200 chr2D 100.000 65 0 0 7626 7690 365367667 365367731 3.950000e-23 121.0
3 TraesCS2D01G286200 chr2B 98.098 7625 105 16 1 7601 433536103 433543711 0.000000e+00 13241.0
4 TraesCS2D01G286200 chr2A 97.101 5001 122 12 1365 6353 492513859 492518848 0.000000e+00 8410.0
5 TraesCS2D01G286200 chr2A 97.511 1366 26 5 1 1366 492512420 492513777 0.000000e+00 2327.0
6 TraesCS2D01G286200 chr2A 97.741 1151 19 2 6350 7500 492518890 492520033 0.000000e+00 1975.0
7 TraesCS2D01G286200 chr2A 83.056 360 42 13 7690 8038 492543051 492543402 7.860000e-80 309.0
8 TraesCS2D01G286200 chr3B 85.882 85 8 3 7761 7841 452278897 452278813 4.010000e-13 87.9
9 TraesCS2D01G286200 chr1A 84.810 79 9 2 7762 7837 460637048 460637126 8.680000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G286200 chr2D 365359978 365368045 8067 False 5047.000000 14899 100.000 1 8068 3 chr2D.!!$F1 8067
1 TraesCS2D01G286200 chr2B 433536103 433543711 7608 False 13241.000000 13241 98.098 1 7601 1 chr2B.!!$F1 7600
2 TraesCS2D01G286200 chr2A 492512420 492520033 7613 False 4237.333333 8410 97.451 1 7500 3 chr2A.!!$F2 7499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
878 887 2.030701 TGTGTTCGTTTTTACGGCTGAC 59.969 45.455 0.00 0.0 0.00 3.51 F
1707 1802 0.886563 CCAGCCAGCTGAAAAGGAAG 59.113 55.000 21.01 0.0 46.30 3.46 F
3140 3249 1.003003 GAAGCAAGAGACCTGAAGCCT 59.997 52.381 0.00 0.0 0.00 4.58 F
3695 3806 0.949397 ACAACAGTCTGACGACGCTA 59.051 50.000 6.91 0.0 44.93 4.26 F
3697 3808 0.949397 AACAGTCTGACGACGCTACA 59.051 50.000 6.91 0.0 44.93 2.74 F
4066 4177 1.078759 CGACTGTCGGTGAGAATGGC 61.079 60.000 21.78 0.0 36.00 4.40 F
4168 4279 1.351017 TCCCTTCCTGACTTTCGCAAT 59.649 47.619 0.00 0.0 0.00 3.56 F
6171 6285 1.280982 CATGATCGGTGAAGTCCACG 58.719 55.000 0.00 0.0 46.62 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 2074 0.399075 GGGTTCTCGAGGGGTTTTCA 59.601 55.000 13.56 0.00 0.00 2.69 R
3695 3806 1.207791 CCAACTCAGGAGGCCTATGT 58.792 55.000 4.42 0.00 29.64 2.29 R
4844 4956 2.636830 CCTGCATAACCAGTTCTCCTG 58.363 52.381 0.00 0.00 41.15 3.86 R
5296 5408 5.638657 GCAATAGAAACATCAAAACATGGCA 59.361 36.000 0.00 0.00 0.00 4.92 R
5766 5879 6.944096 ACCAGAAATGGTAAAGGTACTACTC 58.056 40.000 0.00 0.00 38.07 2.59 R
5866 5980 0.704076 TCTCCCACCTTTTCCCATGG 59.296 55.000 4.14 4.14 0.00 3.66 R
6438 6598 3.600388 AGGAAACAAGAACTATGAGCCG 58.400 45.455 0.00 0.00 0.00 5.52 R
7682 7845 0.106335 ATCTCGCTCCTGAATGGCTG 59.894 55.000 0.00 0.00 35.26 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
431 440 9.627123 AGGTTAATTCCTTCATCATTATCGAAA 57.373 29.630 0.00 0.00 33.52 3.46
653 662 4.141733 TGGGACAATTGATCGAGCAAGATA 60.142 41.667 21.77 0.00 31.92 1.98
806 815 5.716228 TGGATGTTGCCTACAATGATTCTTT 59.284 36.000 0.00 0.00 40.89 2.52
871 880 5.003121 GCTCAGTGTTTGTGTTCGTTTTTAC 59.997 40.000 0.00 0.00 0.00 2.01
878 887 2.030701 TGTGTTCGTTTTTACGGCTGAC 59.969 45.455 0.00 0.00 0.00 3.51
1707 1802 0.886563 CCAGCCAGCTGAAAAGGAAG 59.113 55.000 21.01 0.00 46.30 3.46
1787 1882 1.202746 GGCAATCTCCTCCCTGATGAC 60.203 57.143 0.00 0.00 0.00 3.06
1979 2074 3.371595 GGTTCAATGGCCTACTGTATGGT 60.372 47.826 3.32 0.00 0.00 3.55
2382 2478 6.838198 TGTGATATTACTACGATGTTTGCC 57.162 37.500 0.00 0.00 0.00 4.52
2436 2532 7.801716 TGGCACTGGAAATGTATTTATACTC 57.198 36.000 1.95 0.00 34.41 2.59
2707 2811 2.475519 CGGCCATCACAAATACGTTGAC 60.476 50.000 2.24 0.00 39.87 3.18
2923 3027 1.626321 TGTCGGCTACCCTTCATGAAA 59.374 47.619 9.88 0.00 0.00 2.69
2993 3097 3.763897 GGAAGGTACTGAAATGGCACAAT 59.236 43.478 0.00 0.00 41.29 2.71
3140 3249 1.003003 GAAGCAAGAGACCTGAAGCCT 59.997 52.381 0.00 0.00 0.00 4.58
3485 3594 2.029649 CAGGGAATTGTGCTTTGGAGTG 60.030 50.000 0.00 0.00 0.00 3.51
3695 3806 0.949397 ACAACAGTCTGACGACGCTA 59.051 50.000 6.91 0.00 44.93 4.26
3697 3808 0.949397 AACAGTCTGACGACGCTACA 59.051 50.000 6.91 0.00 44.93 2.74
3787 3898 4.797349 GTCAACTTACTACGGTATGCAGTC 59.203 45.833 0.00 0.00 0.00 3.51
4066 4177 1.078759 CGACTGTCGGTGAGAATGGC 61.079 60.000 21.78 0.00 36.00 4.40
4168 4279 1.351017 TCCCTTCCTGACTTTCGCAAT 59.649 47.619 0.00 0.00 0.00 3.56
4844 4956 4.201990 GCTGTCAATCCATCAATTCTGGAC 60.202 45.833 8.16 0.00 45.27 4.02
5296 5408 6.148480 GCAAGTGTCACTCTATTTGAAGTCAT 59.852 38.462 5.82 0.00 0.00 3.06
5325 5437 9.421806 CATGTTTTGATGTTTCTATTGCCTTAA 57.578 29.630 0.00 0.00 0.00 1.85
5766 5879 3.005791 TGGATATCGCATGTCAGGTAGTG 59.994 47.826 0.00 0.00 0.00 2.74
5866 5980 6.054295 ACATGCCTGTCTCTTTCAGATATTC 58.946 40.000 0.00 0.00 35.20 1.75
6171 6285 1.280982 CATGATCGGTGAAGTCCACG 58.719 55.000 0.00 0.00 46.62 4.94
6179 6293 2.480587 CGGTGAAGTCCACGCACATATA 60.481 50.000 0.00 0.00 46.62 0.86
6323 6438 7.606456 TCTTTCCTTTAGAATTGTATTGACGCT 59.394 33.333 0.00 0.00 33.44 5.07
6400 6560 8.566260 GGAACATGATCCTCAATTCATTCTAAG 58.434 37.037 14.49 0.00 36.50 2.18
6635 6795 8.364142 AGTTTGGAGTAGAGAATATAGTGCATC 58.636 37.037 0.00 0.00 0.00 3.91
7197 7359 7.226325 TCGGAGTCTGTAGCTATTTAGTACTTC 59.774 40.741 0.00 1.48 0.00 3.01
7553 7716 2.017049 GGGATCTCGATTTTGGGTGTG 58.983 52.381 0.00 0.00 0.00 3.82
7554 7717 2.618045 GGGATCTCGATTTTGGGTGTGT 60.618 50.000 0.00 0.00 0.00 3.72
7555 7718 3.370103 GGGATCTCGATTTTGGGTGTGTA 60.370 47.826 0.00 0.00 0.00 2.90
7558 7721 5.391629 GGATCTCGATTTTGGGTGTGTAAAC 60.392 44.000 0.00 0.00 0.00 2.01
7564 7727 0.938713 TTGGGTGTGTAAACGAAGCG 59.061 50.000 0.00 0.00 0.00 4.68
7569 7732 0.531090 TGTGTAAACGAAGCGCCTGT 60.531 50.000 2.29 0.00 0.00 4.00
7592 7755 2.202892 GCCACCGTAGCTACTGCC 60.203 66.667 21.20 0.34 40.80 4.85
7596 7759 0.801067 CACCGTAGCTACTGCCGTTC 60.801 60.000 21.20 0.00 40.80 3.95
7601 7764 3.043586 CGTAGCTACTGCCGTTCTTATG 58.956 50.000 21.20 0.00 40.80 1.90
7602 7765 3.488721 CGTAGCTACTGCCGTTCTTATGT 60.489 47.826 21.20 0.00 40.80 2.29
7603 7766 2.893637 AGCTACTGCCGTTCTTATGTG 58.106 47.619 0.00 0.00 40.80 3.21
7604 7767 1.933853 GCTACTGCCGTTCTTATGTGG 59.066 52.381 0.00 0.00 0.00 4.17
7609 7772 2.939460 GCCGTTCTTATGTGGCAAAT 57.061 45.000 0.00 0.00 46.76 2.32
7610 7773 2.797491 GCCGTTCTTATGTGGCAAATC 58.203 47.619 0.00 0.00 46.76 2.17
7611 7774 2.479560 GCCGTTCTTATGTGGCAAATCC 60.480 50.000 0.00 0.00 46.76 3.01
7612 7775 2.223249 CCGTTCTTATGTGGCAAATCCG 60.223 50.000 0.00 0.00 37.80 4.18
7613 7776 2.791158 CGTTCTTATGTGGCAAATCCGC 60.791 50.000 0.00 0.00 45.62 5.54
7621 7784 2.796651 GCAAATCCGCCAGCTCAG 59.203 61.111 0.00 0.00 0.00 3.35
7622 7785 2.768492 GCAAATCCGCCAGCTCAGG 61.768 63.158 0.00 0.00 0.00 3.86
7623 7786 1.078214 CAAATCCGCCAGCTCAGGA 60.078 57.895 4.07 4.07 38.56 3.86
7624 7787 1.078143 AAATCCGCCAGCTCAGGAC 60.078 57.895 3.70 0.00 36.81 3.85
7625 7788 1.557269 AAATCCGCCAGCTCAGGACT 61.557 55.000 3.70 0.00 36.81 3.85
7626 7789 1.965754 AATCCGCCAGCTCAGGACTC 61.966 60.000 3.70 0.00 36.81 3.36
7627 7790 3.385384 CCGCCAGCTCAGGACTCA 61.385 66.667 0.00 0.00 0.00 3.41
7628 7791 2.183811 CGCCAGCTCAGGACTCAG 59.816 66.667 0.00 0.00 0.00 3.35
7629 7792 2.583520 GCCAGCTCAGGACTCAGG 59.416 66.667 0.00 0.00 0.00 3.86
7630 7793 1.986757 GCCAGCTCAGGACTCAGGA 60.987 63.158 0.00 0.00 0.00 3.86
7631 7794 1.958902 GCCAGCTCAGGACTCAGGAG 61.959 65.000 0.00 0.00 0.00 3.69
7633 7796 2.493973 GCTCAGGACTCAGGAGCG 59.506 66.667 0.00 0.00 43.83 5.03
7634 7797 2.049185 GCTCAGGACTCAGGAGCGA 61.049 63.158 0.00 0.00 43.83 4.93
7635 7798 2.003658 GCTCAGGACTCAGGAGCGAG 62.004 65.000 0.00 0.00 43.83 5.03
7636 7799 0.393673 CTCAGGACTCAGGAGCGAGA 60.394 60.000 0.00 0.00 36.47 4.04
7637 7800 0.257328 TCAGGACTCAGGAGCGAGAT 59.743 55.000 0.00 0.00 36.47 2.75
7638 7801 0.385029 CAGGACTCAGGAGCGAGATG 59.615 60.000 0.00 0.00 36.47 2.90
7639 7802 1.067250 GGACTCAGGAGCGAGATGC 59.933 63.158 0.00 0.00 46.98 3.91
7649 7812 4.147449 CGAGATGCACCTCCGCCA 62.147 66.667 1.37 0.00 0.00 5.69
7650 7813 2.507944 GAGATGCACCTCCGCCAT 59.492 61.111 0.00 0.00 0.00 4.40
7651 7814 1.596477 GAGATGCACCTCCGCCATC 60.596 63.158 0.00 0.00 0.00 3.51
7652 7815 2.037620 GAGATGCACCTCCGCCATCT 62.038 60.000 0.00 2.32 34.56 2.90
7653 7816 1.153086 GATGCACCTCCGCCATCTT 60.153 57.895 0.00 0.00 0.00 2.40
7654 7817 0.749454 GATGCACCTCCGCCATCTTT 60.749 55.000 0.00 0.00 0.00 2.52
7655 7818 0.749454 ATGCACCTCCGCCATCTTTC 60.749 55.000 0.00 0.00 0.00 2.62
7656 7819 1.078143 GCACCTCCGCCATCTTTCT 60.078 57.895 0.00 0.00 0.00 2.52
7657 7820 1.372087 GCACCTCCGCCATCTTTCTG 61.372 60.000 0.00 0.00 0.00 3.02
7658 7821 1.078143 ACCTCCGCCATCTTTCTGC 60.078 57.895 0.00 0.00 0.00 4.26
7667 7830 3.836949 GCCATCTTTCTGCGAAAATTCA 58.163 40.909 5.49 0.00 0.00 2.57
7668 7831 4.236935 GCCATCTTTCTGCGAAAATTCAA 58.763 39.130 5.49 0.00 0.00 2.69
7669 7832 4.685628 GCCATCTTTCTGCGAAAATTCAAA 59.314 37.500 5.49 0.00 0.00 2.69
7670 7833 5.349543 GCCATCTTTCTGCGAAAATTCAAAT 59.650 36.000 5.49 0.00 0.00 2.32
7671 7834 6.128472 GCCATCTTTCTGCGAAAATTCAAATT 60.128 34.615 5.49 0.00 0.00 1.82
7672 7835 7.450627 CCATCTTTCTGCGAAAATTCAAATTC 58.549 34.615 5.49 0.00 0.00 2.17
7673 7836 7.412237 CCATCTTTCTGCGAAAATTCAAATTCC 60.412 37.037 5.49 0.00 0.00 3.01
7674 7837 6.748132 TCTTTCTGCGAAAATTCAAATTCCT 58.252 32.000 5.49 0.00 0.00 3.36
7675 7838 7.881142 TCTTTCTGCGAAAATTCAAATTCCTA 58.119 30.769 5.49 0.00 0.00 2.94
7676 7839 8.023128 TCTTTCTGCGAAAATTCAAATTCCTAG 58.977 33.333 5.49 0.00 0.00 3.02
7677 7840 7.447374 TTCTGCGAAAATTCAAATTCCTAGA 57.553 32.000 0.00 0.00 0.00 2.43
7678 7841 6.842163 TCTGCGAAAATTCAAATTCCTAGAC 58.158 36.000 0.00 0.00 0.00 2.59
7679 7842 6.655003 TCTGCGAAAATTCAAATTCCTAGACT 59.345 34.615 0.00 0.00 0.00 3.24
7680 7843 7.174946 TCTGCGAAAATTCAAATTCCTAGACTT 59.825 33.333 0.00 0.00 0.00 3.01
7681 7844 8.330466 TGCGAAAATTCAAATTCCTAGACTTA 57.670 30.769 0.00 0.00 0.00 2.24
7682 7845 8.234546 TGCGAAAATTCAAATTCCTAGACTTAC 58.765 33.333 0.00 0.00 0.00 2.34
7683 7846 8.234546 GCGAAAATTCAAATTCCTAGACTTACA 58.765 33.333 0.00 0.00 0.00 2.41
7684 7847 9.760660 CGAAAATTCAAATTCCTAGACTTACAG 57.239 33.333 0.00 0.00 0.00 2.74
7685 7848 9.561270 GAAAATTCAAATTCCTAGACTTACAGC 57.439 33.333 0.00 0.00 0.00 4.40
7686 7849 7.631717 AATTCAAATTCCTAGACTTACAGCC 57.368 36.000 0.00 0.00 0.00 4.85
7687 7850 5.755409 TCAAATTCCTAGACTTACAGCCA 57.245 39.130 0.00 0.00 0.00 4.75
7688 7851 6.313519 TCAAATTCCTAGACTTACAGCCAT 57.686 37.500 0.00 0.00 0.00 4.40
7689 7852 6.721318 TCAAATTCCTAGACTTACAGCCATT 58.279 36.000 0.00 0.00 0.00 3.16
7690 7853 6.823689 TCAAATTCCTAGACTTACAGCCATTC 59.176 38.462 0.00 0.00 0.00 2.67
7691 7854 5.957771 ATTCCTAGACTTACAGCCATTCA 57.042 39.130 0.00 0.00 0.00 2.57
7692 7855 5.344743 TTCCTAGACTTACAGCCATTCAG 57.655 43.478 0.00 0.00 0.00 3.02
7693 7856 3.706594 TCCTAGACTTACAGCCATTCAGG 59.293 47.826 0.00 0.00 41.84 3.86
7694 7857 3.706594 CCTAGACTTACAGCCATTCAGGA 59.293 47.826 0.00 0.00 41.22 3.86
7695 7858 3.902881 AGACTTACAGCCATTCAGGAG 57.097 47.619 0.00 0.00 41.22 3.69
7696 7859 2.093235 AGACTTACAGCCATTCAGGAGC 60.093 50.000 0.00 0.00 41.22 4.70
7697 7860 1.293924 CTTACAGCCATTCAGGAGCG 58.706 55.000 0.00 0.00 41.22 5.03
7698 7861 0.901827 TTACAGCCATTCAGGAGCGA 59.098 50.000 0.00 0.00 41.22 4.93
7699 7862 0.461548 TACAGCCATTCAGGAGCGAG 59.538 55.000 0.00 0.00 41.22 5.03
7700 7863 1.260538 ACAGCCATTCAGGAGCGAGA 61.261 55.000 0.00 0.00 41.22 4.04
7701 7864 0.106335 CAGCCATTCAGGAGCGAGAT 59.894 55.000 0.00 0.00 41.22 2.75
7702 7865 0.106335 AGCCATTCAGGAGCGAGATG 59.894 55.000 0.00 0.00 41.22 2.90
7703 7866 1.505477 GCCATTCAGGAGCGAGATGC 61.505 60.000 0.00 0.00 41.22 3.91
7713 7876 4.147449 CGAGATGCACCTCCGCCA 62.147 66.667 1.37 0.00 0.00 5.69
7714 7877 2.507944 GAGATGCACCTCCGCCAT 59.492 61.111 0.00 0.00 0.00 4.40
7715 7878 1.596477 GAGATGCACCTCCGCCATC 60.596 63.158 0.00 0.00 0.00 3.51
7716 7879 2.037620 GAGATGCACCTCCGCCATCT 62.038 60.000 0.00 2.32 34.56 2.90
7717 7880 1.153086 GATGCACCTCCGCCATCTT 60.153 57.895 0.00 0.00 0.00 2.40
7718 7881 0.749454 GATGCACCTCCGCCATCTTT 60.749 55.000 0.00 0.00 0.00 2.52
7719 7882 0.749454 ATGCACCTCCGCCATCTTTC 60.749 55.000 0.00 0.00 0.00 2.62
7720 7883 1.078143 GCACCTCCGCCATCTTTCT 60.078 57.895 0.00 0.00 0.00 2.52
7721 7884 1.372087 GCACCTCCGCCATCTTTCTG 61.372 60.000 0.00 0.00 0.00 3.02
7722 7885 1.078143 ACCTCCGCCATCTTTCTGC 60.078 57.895 0.00 0.00 0.00 4.26
7731 7894 3.836949 GCCATCTTTCTGCGAAAATTCA 58.163 40.909 5.49 0.00 0.00 2.57
7732 7895 4.236935 GCCATCTTTCTGCGAAAATTCAA 58.763 39.130 5.49 0.00 0.00 2.69
7733 7896 4.685628 GCCATCTTTCTGCGAAAATTCAAA 59.314 37.500 5.49 0.00 0.00 2.69
7734 7897 5.349543 GCCATCTTTCTGCGAAAATTCAAAT 59.650 36.000 5.49 0.00 0.00 2.32
7735 7898 6.128472 GCCATCTTTCTGCGAAAATTCAAATT 60.128 34.615 5.49 0.00 0.00 1.82
7736 7899 7.450627 CCATCTTTCTGCGAAAATTCAAATTC 58.549 34.615 5.49 0.00 0.00 2.17
7737 7900 7.412237 CCATCTTTCTGCGAAAATTCAAATTCC 60.412 37.037 5.49 0.00 0.00 3.01
7738 7901 6.748132 TCTTTCTGCGAAAATTCAAATTCCT 58.252 32.000 5.49 0.00 0.00 3.36
7739 7902 7.881142 TCTTTCTGCGAAAATTCAAATTCCTA 58.119 30.769 5.49 0.00 0.00 2.94
7740 7903 8.023128 TCTTTCTGCGAAAATTCAAATTCCTAG 58.977 33.333 5.49 0.00 0.00 3.02
7741 7904 7.447374 TTCTGCGAAAATTCAAATTCCTAGA 57.553 32.000 0.00 0.00 0.00 2.43
7742 7905 6.842163 TCTGCGAAAATTCAAATTCCTAGAC 58.158 36.000 0.00 0.00 0.00 2.59
7743 7906 6.655003 TCTGCGAAAATTCAAATTCCTAGACT 59.345 34.615 0.00 0.00 0.00 3.24
7744 7907 7.174946 TCTGCGAAAATTCAAATTCCTAGACTT 59.825 33.333 0.00 0.00 0.00 3.01
7745 7908 8.330466 TGCGAAAATTCAAATTCCTAGACTTA 57.670 30.769 0.00 0.00 0.00 2.24
7746 7909 8.234546 TGCGAAAATTCAAATTCCTAGACTTAC 58.765 33.333 0.00 0.00 0.00 2.34
7747 7910 8.234546 GCGAAAATTCAAATTCCTAGACTTACA 58.765 33.333 0.00 0.00 0.00 2.41
7748 7911 9.760660 CGAAAATTCAAATTCCTAGACTTACAG 57.239 33.333 0.00 0.00 0.00 2.74
7749 7912 9.561270 GAAAATTCAAATTCCTAGACTTACAGC 57.439 33.333 0.00 0.00 0.00 4.40
7750 7913 7.631717 AATTCAAATTCCTAGACTTACAGCC 57.368 36.000 0.00 0.00 0.00 4.85
7751 7914 5.755409 TCAAATTCCTAGACTTACAGCCA 57.245 39.130 0.00 0.00 0.00 4.75
7752 7915 6.313519 TCAAATTCCTAGACTTACAGCCAT 57.686 37.500 0.00 0.00 0.00 4.40
7753 7916 6.721318 TCAAATTCCTAGACTTACAGCCATT 58.279 36.000 0.00 0.00 0.00 3.16
7754 7917 7.175104 TCAAATTCCTAGACTTACAGCCATTT 58.825 34.615 0.00 0.00 0.00 2.32
7755 7918 7.669722 TCAAATTCCTAGACTTACAGCCATTTT 59.330 33.333 0.00 0.00 0.00 1.82
7756 7919 8.956426 CAAATTCCTAGACTTACAGCCATTTTA 58.044 33.333 0.00 0.00 0.00 1.52
7757 7920 8.507524 AATTCCTAGACTTACAGCCATTTTAC 57.492 34.615 0.00 0.00 0.00 2.01
7758 7921 6.869206 TCCTAGACTTACAGCCATTTTACT 57.131 37.500 0.00 0.00 0.00 2.24
7759 7922 6.640518 TCCTAGACTTACAGCCATTTTACTG 58.359 40.000 0.00 0.00 39.86 2.74
7760 7923 6.439375 TCCTAGACTTACAGCCATTTTACTGA 59.561 38.462 0.00 0.00 37.35 3.41
7761 7924 7.125811 TCCTAGACTTACAGCCATTTTACTGAT 59.874 37.037 0.00 0.00 37.35 2.90
7762 7925 7.770897 CCTAGACTTACAGCCATTTTACTGATT 59.229 37.037 0.00 0.00 37.35 2.57
7763 7926 9.167311 CTAGACTTACAGCCATTTTACTGATTT 57.833 33.333 0.00 0.00 37.35 2.17
7764 7927 8.409358 AGACTTACAGCCATTTTACTGATTTT 57.591 30.769 0.00 0.00 37.35 1.82
7765 7928 8.860088 AGACTTACAGCCATTTTACTGATTTTT 58.140 29.630 0.00 0.00 37.35 1.94
7787 7950 5.559694 TTTTACGTAGTACAGACGCAAAC 57.440 39.130 17.30 0.00 45.76 2.93
7788 7951 1.678360 ACGTAGTACAGACGCAAACG 58.322 50.000 17.30 6.42 44.14 3.60
7789 7952 0.361184 CGTAGTACAGACGCAAACGC 59.639 55.000 7.31 0.00 45.53 4.84
7790 7953 1.694639 GTAGTACAGACGCAAACGCT 58.305 50.000 0.00 0.00 45.53 5.07
7791 7954 1.647702 GTAGTACAGACGCAAACGCTC 59.352 52.381 0.00 0.00 45.53 5.03
7792 7955 0.031585 AGTACAGACGCAAACGCTCA 59.968 50.000 0.00 0.00 45.53 4.26
7793 7956 1.068474 GTACAGACGCAAACGCTCAT 58.932 50.000 0.00 0.00 45.53 2.90
7794 7957 2.094906 AGTACAGACGCAAACGCTCATA 60.095 45.455 0.00 0.00 45.53 2.15
7795 7958 2.010145 ACAGACGCAAACGCTCATAT 57.990 45.000 0.00 0.00 45.53 1.78
7796 7959 3.159353 ACAGACGCAAACGCTCATATA 57.841 42.857 0.00 0.00 45.53 0.86
7797 7960 3.717707 ACAGACGCAAACGCTCATATAT 58.282 40.909 0.00 0.00 45.53 0.86
7798 7961 4.866921 ACAGACGCAAACGCTCATATATA 58.133 39.130 0.00 0.00 45.53 0.86
7799 7962 5.470368 ACAGACGCAAACGCTCATATATAT 58.530 37.500 0.00 0.00 45.53 0.86
7800 7963 6.617879 ACAGACGCAAACGCTCATATATATA 58.382 36.000 0.00 0.00 45.53 0.86
7801 7964 6.527023 ACAGACGCAAACGCTCATATATATAC 59.473 38.462 0.00 0.00 45.53 1.47
7802 7965 5.737757 AGACGCAAACGCTCATATATATACG 59.262 40.000 9.29 9.29 45.53 3.06
7803 7966 4.264614 ACGCAAACGCTCATATATATACGC 59.735 41.667 10.31 8.05 45.53 4.42
7804 7967 4.264380 CGCAAACGCTCATATATATACGCA 59.736 41.667 12.98 0.00 0.00 5.24
7805 7968 5.051708 CGCAAACGCTCATATATATACGCAT 60.052 40.000 12.98 0.00 0.00 4.73
7806 7969 6.141685 CGCAAACGCTCATATATATACGCATA 59.858 38.462 12.98 0.00 0.00 3.14
7807 7970 7.274367 GCAAACGCTCATATATATACGCATAC 58.726 38.462 12.98 1.00 0.00 2.39
7808 7971 7.043656 GCAAACGCTCATATATATACGCATACA 60.044 37.037 12.98 0.00 0.00 2.29
7809 7972 8.968242 CAAACGCTCATATATATACGCATACAT 58.032 33.333 12.98 0.00 0.00 2.29
7810 7973 9.529325 AAACGCTCATATATATACGCATACATT 57.471 29.630 12.98 0.02 0.00 2.71
7811 7974 8.729529 ACGCTCATATATATACGCATACATTC 57.270 34.615 12.98 0.00 0.00 2.67
7812 7975 8.349983 ACGCTCATATATATACGCATACATTCA 58.650 33.333 12.98 0.00 0.00 2.57
7813 7976 9.346725 CGCTCATATATATACGCATACATTCAT 57.653 33.333 12.98 0.00 0.00 2.57
7826 7989 9.847706 ACGCATACATTCATTTTTATAAACACA 57.152 25.926 0.00 0.00 0.00 3.72
7832 7995 8.934825 ACATTCATTTTTATAAACACACCATGC 58.065 29.630 0.00 0.00 0.00 4.06
7833 7996 8.933807 CATTCATTTTTATAAACACACCATGCA 58.066 29.630 0.00 0.00 0.00 3.96
7834 7997 7.881643 TCATTTTTATAAACACACCATGCAC 57.118 32.000 0.00 0.00 0.00 4.57
7835 7998 7.436933 TCATTTTTATAAACACACCATGCACA 58.563 30.769 0.00 0.00 0.00 4.57
7836 7999 7.383572 TCATTTTTATAAACACACCATGCACAC 59.616 33.333 0.00 0.00 0.00 3.82
7837 8000 4.775058 TTATAAACACACCATGCACACC 57.225 40.909 0.00 0.00 0.00 4.16
7838 8001 2.058593 TAAACACACCATGCACACCA 57.941 45.000 0.00 0.00 0.00 4.17
7839 8002 1.412079 AAACACACCATGCACACCAT 58.588 45.000 0.00 0.00 33.39 3.55
7840 8003 2.284754 AACACACCATGCACACCATA 57.715 45.000 0.00 0.00 31.47 2.74
7841 8004 1.825090 ACACACCATGCACACCATAG 58.175 50.000 0.00 0.00 31.47 2.23
7842 8005 0.452987 CACACCATGCACACCATAGC 59.547 55.000 0.00 0.00 31.47 2.97
7843 8006 0.329261 ACACCATGCACACCATAGCT 59.671 50.000 0.00 0.00 31.47 3.32
7844 8007 0.736636 CACCATGCACACCATAGCTG 59.263 55.000 0.00 0.00 31.47 4.24
7858 8021 4.624015 CCATAGCTGGCACATTATTTTGG 58.376 43.478 0.00 0.00 38.20 3.28
7859 8022 4.501915 CCATAGCTGGCACATTATTTTGGG 60.502 45.833 0.00 0.00 38.20 4.12
7860 8023 2.818921 AGCTGGCACATTATTTTGGGA 58.181 42.857 0.00 0.00 38.20 4.37
7861 8024 3.377573 AGCTGGCACATTATTTTGGGAT 58.622 40.909 0.00 0.00 38.20 3.85
7862 8025 3.776417 AGCTGGCACATTATTTTGGGATT 59.224 39.130 0.00 0.00 38.20 3.01
7863 8026 4.961730 AGCTGGCACATTATTTTGGGATTA 59.038 37.500 0.00 0.00 38.20 1.75
7864 8027 5.603813 AGCTGGCACATTATTTTGGGATTAT 59.396 36.000 0.00 0.00 38.20 1.28
7865 8028 5.928264 GCTGGCACATTATTTTGGGATTATC 59.072 40.000 0.00 0.00 38.20 1.75
7866 8029 6.083098 TGGCACATTATTTTGGGATTATCG 57.917 37.500 0.00 0.00 0.00 2.92
7867 8030 5.830457 TGGCACATTATTTTGGGATTATCGA 59.170 36.000 0.00 0.00 0.00 3.59
7868 8031 6.322456 TGGCACATTATTTTGGGATTATCGAA 59.678 34.615 0.00 0.00 0.00 3.71
7869 8032 6.863126 GGCACATTATTTTGGGATTATCGAAG 59.137 38.462 0.00 0.00 0.00 3.79
7870 8033 7.425606 GCACATTATTTTGGGATTATCGAAGT 58.574 34.615 0.00 0.00 0.00 3.01
7871 8034 7.591426 GCACATTATTTTGGGATTATCGAAGTC 59.409 37.037 0.00 0.00 0.00 3.01
7872 8035 7.798516 CACATTATTTTGGGATTATCGAAGTCG 59.201 37.037 0.00 0.00 41.45 4.18
7873 8036 4.813296 ATTTTGGGATTATCGAAGTCGC 57.187 40.909 0.00 0.00 39.60 5.19
7874 8037 3.536956 TTTGGGATTATCGAAGTCGCT 57.463 42.857 11.43 0.00 39.60 4.93
7875 8038 4.659111 TTTGGGATTATCGAAGTCGCTA 57.341 40.909 11.43 3.96 39.60 4.26
7876 8039 3.637998 TGGGATTATCGAAGTCGCTAC 57.362 47.619 11.43 0.00 39.60 3.58
7877 8040 2.953648 TGGGATTATCGAAGTCGCTACA 59.046 45.455 11.43 0.00 39.60 2.74
7878 8041 3.243301 TGGGATTATCGAAGTCGCTACAC 60.243 47.826 11.43 0.00 39.60 2.90
7879 8042 3.243301 GGGATTATCGAAGTCGCTACACA 60.243 47.826 0.00 0.00 39.60 3.72
7880 8043 3.729716 GGATTATCGAAGTCGCTACACAC 59.270 47.826 0.00 0.00 39.60 3.82
7881 8044 2.447089 TATCGAAGTCGCTACACACG 57.553 50.000 0.00 0.00 39.60 4.49
7882 8045 0.520404 ATCGAAGTCGCTACACACGT 59.480 50.000 0.00 0.00 39.60 4.49
7883 8046 0.110509 TCGAAGTCGCTACACACGTC 60.111 55.000 0.00 0.00 39.60 4.34
7884 8047 0.110328 CGAAGTCGCTACACACGTCT 60.110 55.000 0.00 0.00 0.00 4.18
7885 8048 1.662309 CGAAGTCGCTACACACGTCTT 60.662 52.381 0.00 0.00 40.61 3.01
7886 8049 2.391879 GAAGTCGCTACACACGTCTTT 58.608 47.619 0.00 0.00 38.63 2.52
7887 8050 1.767289 AGTCGCTACACACGTCTTTG 58.233 50.000 0.00 0.00 0.00 2.77
7888 8051 0.161024 GTCGCTACACACGTCTTTGC 59.839 55.000 0.00 0.00 0.00 3.68
7889 8052 0.249114 TCGCTACACACGTCTTTGCA 60.249 50.000 0.00 0.00 0.00 4.08
7890 8053 0.790207 CGCTACACACGTCTTTGCAT 59.210 50.000 0.00 0.00 0.00 3.96
7891 8054 1.201812 CGCTACACACGTCTTTGCATC 60.202 52.381 0.00 0.00 0.00 3.91
7892 8055 1.201812 GCTACACACGTCTTTGCATCG 60.202 52.381 0.00 0.00 0.00 3.84
7893 8056 2.324860 CTACACACGTCTTTGCATCGA 58.675 47.619 7.79 0.00 0.00 3.59
7894 8057 1.795768 ACACACGTCTTTGCATCGAT 58.204 45.000 0.00 0.00 0.00 3.59
7895 8058 2.954316 ACACACGTCTTTGCATCGATA 58.046 42.857 0.00 0.00 0.00 2.92
7896 8059 2.923655 ACACACGTCTTTGCATCGATAG 59.076 45.455 0.00 0.00 0.00 2.08
7897 8060 2.923655 CACACGTCTTTGCATCGATAGT 59.076 45.455 0.00 1.28 37.40 2.12
7898 8061 4.102649 CACACGTCTTTGCATCGATAGTA 58.897 43.478 0.00 0.00 37.40 1.82
7899 8062 4.561213 CACACGTCTTTGCATCGATAGTAA 59.439 41.667 0.00 0.00 37.40 2.24
7900 8063 5.232202 CACACGTCTTTGCATCGATAGTAAT 59.768 40.000 0.00 0.00 37.40 1.89
7901 8064 5.232202 ACACGTCTTTGCATCGATAGTAATG 59.768 40.000 0.00 2.04 37.40 1.90
7902 8065 5.232202 CACGTCTTTGCATCGATAGTAATGT 59.768 40.000 0.00 0.00 37.40 2.71
7903 8066 5.459107 ACGTCTTTGCATCGATAGTAATGTC 59.541 40.000 0.00 0.00 37.40 3.06
7904 8067 5.687730 CGTCTTTGCATCGATAGTAATGTCT 59.312 40.000 0.00 0.00 37.40 3.41
7905 8068 6.129326 CGTCTTTGCATCGATAGTAATGTCTC 60.129 42.308 0.00 0.00 37.40 3.36
7906 8069 6.144724 GTCTTTGCATCGATAGTAATGTCTCC 59.855 42.308 0.00 0.00 37.40 3.71
7907 8070 5.791336 TTGCATCGATAGTAATGTCTCCT 57.209 39.130 0.00 0.00 37.40 3.69
7908 8071 5.378292 TGCATCGATAGTAATGTCTCCTC 57.622 43.478 0.00 0.00 37.40 3.71
7909 8072 5.073428 TGCATCGATAGTAATGTCTCCTCT 58.927 41.667 0.00 0.00 37.40 3.69
7910 8073 5.182190 TGCATCGATAGTAATGTCTCCTCTC 59.818 44.000 0.00 0.00 37.40 3.20
7911 8074 5.182190 GCATCGATAGTAATGTCTCCTCTCA 59.818 44.000 0.00 0.00 37.40 3.27
7912 8075 6.294231 GCATCGATAGTAATGTCTCCTCTCAA 60.294 42.308 0.00 0.00 37.40 3.02
7913 8076 7.576666 GCATCGATAGTAATGTCTCCTCTCAAT 60.577 40.741 0.00 0.00 37.40 2.57
7914 8077 7.208225 TCGATAGTAATGTCTCCTCTCAATG 57.792 40.000 0.00 0.00 37.40 2.82
7915 8078 6.998673 TCGATAGTAATGTCTCCTCTCAATGA 59.001 38.462 0.00 0.00 37.40 2.57
7916 8079 7.502561 TCGATAGTAATGTCTCCTCTCAATGAA 59.497 37.037 0.00 0.00 37.40 2.57
7917 8080 7.593273 CGATAGTAATGTCTCCTCTCAATGAAC 59.407 40.741 0.00 0.00 0.00 3.18
7918 8081 5.655488 AGTAATGTCTCCTCTCAATGAACG 58.345 41.667 0.00 0.00 0.00 3.95
7919 8082 2.370281 TGTCTCCTCTCAATGAACGC 57.630 50.000 0.00 0.00 0.00 4.84
7920 8083 1.618343 TGTCTCCTCTCAATGAACGCA 59.382 47.619 0.00 0.00 0.00 5.24
7921 8084 1.996191 GTCTCCTCTCAATGAACGCAC 59.004 52.381 0.00 0.00 0.00 5.34
7922 8085 1.618343 TCTCCTCTCAATGAACGCACA 59.382 47.619 0.00 0.00 0.00 4.57
7923 8086 2.234661 TCTCCTCTCAATGAACGCACAT 59.765 45.455 0.00 0.00 0.00 3.21
7924 8087 3.447229 TCTCCTCTCAATGAACGCACATA 59.553 43.478 0.00 0.00 0.00 2.29
7925 8088 3.521560 TCCTCTCAATGAACGCACATAC 58.478 45.455 0.00 0.00 0.00 2.39
7926 8089 3.195610 TCCTCTCAATGAACGCACATACT 59.804 43.478 0.00 0.00 0.00 2.12
7927 8090 3.553511 CCTCTCAATGAACGCACATACTC 59.446 47.826 0.00 0.00 0.00 2.59
7928 8091 3.179048 TCTCAATGAACGCACATACTCG 58.821 45.455 0.00 0.00 0.00 4.18
7929 8092 3.119637 TCTCAATGAACGCACATACTCGA 60.120 43.478 0.00 0.00 0.00 4.04
7930 8093 3.580731 TCAATGAACGCACATACTCGAA 58.419 40.909 0.00 0.00 0.00 3.71
7931 8094 3.991121 TCAATGAACGCACATACTCGAAA 59.009 39.130 0.00 0.00 0.00 3.46
7932 8095 4.091365 TCAATGAACGCACATACTCGAAAG 59.909 41.667 0.00 0.00 0.00 2.62
7933 8096 2.333926 TGAACGCACATACTCGAAAGG 58.666 47.619 0.00 0.00 0.00 3.11
7934 8097 2.288579 TGAACGCACATACTCGAAAGGT 60.289 45.455 0.00 0.00 0.00 3.50
7935 8098 1.992170 ACGCACATACTCGAAAGGTC 58.008 50.000 0.00 0.00 0.00 3.85
7936 8099 1.544691 ACGCACATACTCGAAAGGTCT 59.455 47.619 0.00 0.00 0.00 3.85
7937 8100 2.751259 ACGCACATACTCGAAAGGTCTA 59.249 45.455 0.00 0.00 0.00 2.59
7938 8101 3.192001 ACGCACATACTCGAAAGGTCTAA 59.808 43.478 0.00 0.00 0.00 2.10
7939 8102 4.171005 CGCACATACTCGAAAGGTCTAAA 58.829 43.478 0.00 0.00 0.00 1.85
7940 8103 4.624024 CGCACATACTCGAAAGGTCTAAAA 59.376 41.667 0.00 0.00 0.00 1.52
7941 8104 5.291128 CGCACATACTCGAAAGGTCTAAAAT 59.709 40.000 0.00 0.00 0.00 1.82
7942 8105 6.474427 CGCACATACTCGAAAGGTCTAAAATA 59.526 38.462 0.00 0.00 0.00 1.40
7943 8106 7.009815 CGCACATACTCGAAAGGTCTAAAATAA 59.990 37.037 0.00 0.00 0.00 1.40
7944 8107 8.662141 GCACATACTCGAAAGGTCTAAAATAAA 58.338 33.333 0.00 0.00 0.00 1.40
7950 8113 9.720769 ACTCGAAAGGTCTAAAATAAATTCAGA 57.279 29.630 0.00 0.00 0.00 3.27
7970 8133 9.878599 ATTCAGAAAAATACGACACTAACAAAG 57.121 29.630 0.00 0.00 0.00 2.77
7971 8134 8.428186 TCAGAAAAATACGACACTAACAAAGT 57.572 30.769 0.00 0.00 39.81 2.66
7972 8135 8.545420 TCAGAAAAATACGACACTAACAAAGTC 58.455 33.333 0.00 0.00 35.76 3.01
7973 8136 8.548721 CAGAAAAATACGACACTAACAAAGTCT 58.451 33.333 0.00 0.00 35.76 3.24
7974 8137 9.754382 AGAAAAATACGACACTAACAAAGTCTA 57.246 29.630 0.00 0.00 35.76 2.59
7977 8140 9.701098 AAAATACGACACTAACAAAGTCTATGA 57.299 29.630 0.00 0.00 35.76 2.15
7978 8141 8.684973 AATACGACACTAACAAAGTCTATGAC 57.315 34.615 0.00 0.00 35.76 3.06
7979 8142 6.328641 ACGACACTAACAAAGTCTATGACT 57.671 37.500 0.00 0.00 45.64 3.41
7991 8154 4.421131 AGTCTATGACTTGAACTCTGGGT 58.579 43.478 0.00 0.00 40.28 4.51
7992 8155 4.221703 AGTCTATGACTTGAACTCTGGGTG 59.778 45.833 0.00 0.00 40.28 4.61
7993 8156 2.867109 ATGACTTGAACTCTGGGTGG 57.133 50.000 0.00 0.00 0.00 4.61
7994 8157 0.764890 TGACTTGAACTCTGGGTGGG 59.235 55.000 0.00 0.00 0.00 4.61
7995 8158 1.056660 GACTTGAACTCTGGGTGGGA 58.943 55.000 0.00 0.00 0.00 4.37
7996 8159 1.630878 GACTTGAACTCTGGGTGGGAT 59.369 52.381 0.00 0.00 0.00 3.85
7997 8160 2.838202 GACTTGAACTCTGGGTGGGATA 59.162 50.000 0.00 0.00 0.00 2.59
7998 8161 2.840651 ACTTGAACTCTGGGTGGGATAG 59.159 50.000 0.00 0.00 0.00 2.08
7999 8162 1.879575 TGAACTCTGGGTGGGATAGG 58.120 55.000 0.00 0.00 0.00 2.57
8000 8163 1.132500 GAACTCTGGGTGGGATAGGG 58.868 60.000 0.00 0.00 0.00 3.53
8001 8164 0.722676 AACTCTGGGTGGGATAGGGA 59.277 55.000 0.00 0.00 0.00 4.20
8002 8165 0.952659 ACTCTGGGTGGGATAGGGAT 59.047 55.000 0.00 0.00 0.00 3.85
8003 8166 2.161624 ACTCTGGGTGGGATAGGGATA 58.838 52.381 0.00 0.00 0.00 2.59
8004 8167 2.735906 ACTCTGGGTGGGATAGGGATAT 59.264 50.000 0.00 0.00 0.00 1.63
8005 8168 3.246167 ACTCTGGGTGGGATAGGGATATC 60.246 52.174 0.00 0.00 0.00 1.63
8006 8169 2.733071 TCTGGGTGGGATAGGGATATCA 59.267 50.000 4.83 0.00 0.00 2.15
8007 8170 3.344071 TCTGGGTGGGATAGGGATATCAT 59.656 47.826 4.83 0.00 0.00 2.45
8008 8171 4.114597 CTGGGTGGGATAGGGATATCATT 58.885 47.826 4.83 0.00 0.00 2.57
8009 8172 3.851976 TGGGTGGGATAGGGATATCATTG 59.148 47.826 4.83 0.00 0.00 2.82
8010 8173 3.852578 GGGTGGGATAGGGATATCATTGT 59.147 47.826 4.83 0.00 0.00 2.71
8011 8174 4.080299 GGGTGGGATAGGGATATCATTGTC 60.080 50.000 4.83 0.00 0.00 3.18
8012 8175 4.785376 GGTGGGATAGGGATATCATTGTCT 59.215 45.833 4.83 0.00 0.00 3.41
8013 8176 5.251700 GGTGGGATAGGGATATCATTGTCTT 59.748 44.000 4.83 0.00 0.00 3.01
8014 8177 6.240292 GGTGGGATAGGGATATCATTGTCTTT 60.240 42.308 4.83 0.00 0.00 2.52
8015 8178 7.234355 GTGGGATAGGGATATCATTGTCTTTT 58.766 38.462 4.83 0.00 0.00 2.27
8016 8179 7.725844 GTGGGATAGGGATATCATTGTCTTTTT 59.274 37.037 4.83 0.00 0.00 1.94
8017 8180 8.954729 TGGGATAGGGATATCATTGTCTTTTTA 58.045 33.333 4.83 0.00 0.00 1.52
8018 8181 9.807921 GGGATAGGGATATCATTGTCTTTTTAA 57.192 33.333 4.83 0.00 0.00 1.52
8045 8208 9.515020 TCATCCAATCTTTTGTTAAATATTCGC 57.485 29.630 0.00 0.00 0.00 4.70
8046 8209 7.962934 TCCAATCTTTTGTTAAATATTCGCG 57.037 32.000 0.00 0.00 0.00 5.87
8047 8210 6.470877 TCCAATCTTTTGTTAAATATTCGCGC 59.529 34.615 0.00 0.00 0.00 6.86
8048 8211 6.472163 CCAATCTTTTGTTAAATATTCGCGCT 59.528 34.615 5.56 0.00 0.00 5.92
8049 8212 7.322260 CAATCTTTTGTTAAATATTCGCGCTG 58.678 34.615 5.56 0.00 0.00 5.18
8050 8213 5.328691 TCTTTTGTTAAATATTCGCGCTGG 58.671 37.500 5.56 0.00 0.00 4.85
8051 8214 3.684103 TTGTTAAATATTCGCGCTGGG 57.316 42.857 5.56 0.00 0.00 4.45
8052 8215 1.332375 TGTTAAATATTCGCGCTGGGC 59.668 47.619 5.56 6.64 38.69 5.36
8053 8216 1.602377 GTTAAATATTCGCGCTGGGCT 59.398 47.619 14.94 0.00 40.44 5.19
8054 8217 1.225855 TAAATATTCGCGCTGGGCTG 58.774 50.000 14.94 8.44 40.44 4.85
8055 8218 2.063541 AAATATTCGCGCTGGGCTGC 62.064 55.000 14.94 0.00 40.44 5.25
8056 8219 3.755526 ATATTCGCGCTGGGCTGCA 62.756 57.895 14.94 0.00 40.44 4.41
8057 8220 3.755526 TATTCGCGCTGGGCTGCAT 62.756 57.895 14.94 6.96 40.44 3.96
8060 8223 4.897357 CGCGCTGGGCTGCATCTA 62.897 66.667 14.94 0.00 40.44 1.98
8061 8224 2.281345 GCGCTGGGCTGCATCTAT 60.281 61.111 9.69 0.00 39.11 1.98
8062 8225 1.895707 GCGCTGGGCTGCATCTATT 60.896 57.895 9.69 0.00 39.11 1.73
8063 8226 1.947013 CGCTGGGCTGCATCTATTG 59.053 57.895 0.50 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
431 440 6.174049 GTCTAACAGGCCTCTACAAAAAGAT 58.826 40.000 0.00 0.00 0.00 2.40
653 662 4.504858 GAAACAACGATACACATCCTCCT 58.495 43.478 0.00 0.00 0.00 3.69
871 880 5.757886 TCAAAACAAGAAATAAGTCAGCCG 58.242 37.500 0.00 0.00 0.00 5.52
1707 1802 1.662629 CTCGTCATCTGCATGGTTGAC 59.337 52.381 6.96 6.96 36.09 3.18
1979 2074 0.399075 GGGTTCTCGAGGGGTTTTCA 59.601 55.000 13.56 0.00 0.00 2.69
2382 2478 7.771183 AGTACCAATACAACAAATAATGGCAG 58.229 34.615 0.00 0.00 33.30 4.85
2832 2936 3.383620 AAATGGACAGATGCGCAAAAA 57.616 38.095 17.11 0.00 0.00 1.94
2993 3097 5.344743 TTTTGGCTTTCATTGGTTGTACA 57.655 34.783 0.00 0.00 0.00 2.90
3140 3249 2.747467 GCCATATTCTGCTGCTTCCTGA 60.747 50.000 0.00 0.00 0.00 3.86
3464 3573 2.029649 CACTCCAAAGCACAATTCCCTG 60.030 50.000 0.00 0.00 0.00 4.45
3485 3594 3.434940 ACACCTACCCAATTTCCTCAC 57.565 47.619 0.00 0.00 0.00 3.51
3695 3806 1.207791 CCAACTCAGGAGGCCTATGT 58.792 55.000 4.42 0.00 29.64 2.29
4066 4177 3.194116 CACCCATCTTTCCAAGTGAATGG 59.806 47.826 0.00 0.00 42.12 3.16
4168 4279 5.337169 GCAAGAAATACCATTACTTTGGCCA 60.337 40.000 0.00 0.00 40.68 5.36
4475 4587 9.415008 TGCCAATTACCATTAAGCTATAAAAGA 57.585 29.630 0.00 0.00 0.00 2.52
4844 4956 2.636830 CCTGCATAACCAGTTCTCCTG 58.363 52.381 0.00 0.00 41.15 3.86
5296 5408 5.638657 GCAATAGAAACATCAAAACATGGCA 59.361 36.000 0.00 0.00 0.00 4.92
5766 5879 6.944096 ACCAGAAATGGTAAAGGTACTACTC 58.056 40.000 0.00 0.00 38.07 2.59
5866 5980 0.704076 TCTCCCACCTTTTCCCATGG 59.296 55.000 4.14 4.14 0.00 3.66
6438 6598 3.600388 AGGAAACAAGAACTATGAGCCG 58.400 45.455 0.00 0.00 0.00 5.52
6635 6795 1.396653 GAGGGGCAATCTTGTCATGG 58.603 55.000 0.00 0.00 33.59 3.66
7197 7359 0.389391 CTGGTAGCCCACGACATAGG 59.611 60.000 0.00 0.00 35.17 2.57
7224 7386 3.611530 GCGACAAAATTTGCAGCCTCTAA 60.612 43.478 5.52 0.00 32.50 2.10
7471 7633 4.799678 TCAAAACAGTTTCAAAAGACGCA 58.200 34.783 0.00 0.00 0.00 5.24
7553 7716 1.154469 GCACAGGCGCTTCGTTTAC 60.154 57.895 7.64 0.00 0.00 2.01
7554 7717 3.249999 GCACAGGCGCTTCGTTTA 58.750 55.556 7.64 0.00 0.00 2.01
7587 7750 2.854522 GCCACATAAGAACGGCAGT 58.145 52.632 0.00 0.00 44.25 4.40
7592 7755 2.791158 GCGGATTTGCCACATAAGAACG 60.791 50.000 0.00 0.00 35.94 3.95
7604 7767 2.768492 CCTGAGCTGGCGGATTTGC 61.768 63.158 0.00 0.00 0.00 3.68
7605 7768 1.078214 TCCTGAGCTGGCGGATTTG 60.078 57.895 0.00 0.00 0.00 2.32
7606 7769 1.078143 GTCCTGAGCTGGCGGATTT 60.078 57.895 0.00 0.00 0.00 2.17
7607 7770 1.965754 GAGTCCTGAGCTGGCGGATT 61.966 60.000 0.00 0.00 0.00 3.01
7608 7771 2.364842 AGTCCTGAGCTGGCGGAT 60.365 61.111 0.00 0.00 0.00 4.18
7609 7772 3.071206 GAGTCCTGAGCTGGCGGA 61.071 66.667 0.00 0.00 0.00 5.54
7610 7773 3.368190 CTGAGTCCTGAGCTGGCGG 62.368 68.421 0.00 0.00 0.00 6.13
7611 7774 2.183811 CTGAGTCCTGAGCTGGCG 59.816 66.667 0.00 0.00 0.00 5.69
7612 7775 1.958902 CTCCTGAGTCCTGAGCTGGC 61.959 65.000 0.00 0.00 0.00 4.85
7613 7776 1.958902 GCTCCTGAGTCCTGAGCTGG 61.959 65.000 18.76 0.00 46.19 4.85
7614 7777 1.516892 GCTCCTGAGTCCTGAGCTG 59.483 63.158 18.76 0.00 46.19 4.24
7615 7778 4.032653 GCTCCTGAGTCCTGAGCT 57.967 61.111 18.76 0.00 46.19 4.09
7616 7779 2.003658 CTCGCTCCTGAGTCCTGAGC 62.004 65.000 16.95 16.95 46.21 4.26
7617 7780 0.393673 TCTCGCTCCTGAGTCCTGAG 60.394 60.000 2.44 2.44 37.28 3.35
7618 7781 0.257328 ATCTCGCTCCTGAGTCCTGA 59.743 55.000 0.00 0.00 37.28 3.86
7619 7782 0.385029 CATCTCGCTCCTGAGTCCTG 59.615 60.000 0.00 0.00 37.28 3.86
7620 7783 1.391157 GCATCTCGCTCCTGAGTCCT 61.391 60.000 0.00 0.00 37.28 3.85
7621 7784 1.067250 GCATCTCGCTCCTGAGTCC 59.933 63.158 0.00 0.00 37.28 3.85
7622 7785 0.527385 GTGCATCTCGCTCCTGAGTC 60.527 60.000 0.00 0.00 43.06 3.36
7623 7786 1.515020 GTGCATCTCGCTCCTGAGT 59.485 57.895 0.00 0.00 43.06 3.41
7624 7787 4.416533 GTGCATCTCGCTCCTGAG 57.583 61.111 0.00 0.00 43.06 3.35
7629 7792 2.279120 CGGAGGTGCATCTCGCTC 60.279 66.667 20.52 6.28 43.06 5.03
7630 7793 4.521062 GCGGAGGTGCATCTCGCT 62.521 66.667 26.16 0.00 43.06 4.93
7632 7795 3.451556 ATGGCGGAGGTGCATCTCG 62.452 63.158 20.52 16.08 36.28 4.04
7633 7796 1.596477 GATGGCGGAGGTGCATCTC 60.596 63.158 19.20 19.20 36.28 2.75
7634 7797 1.630126 AAGATGGCGGAGGTGCATCT 61.630 55.000 0.00 0.00 35.61 2.90
7635 7798 0.749454 AAAGATGGCGGAGGTGCATC 60.749 55.000 0.00 0.00 36.28 3.91
7636 7799 0.749454 GAAAGATGGCGGAGGTGCAT 60.749 55.000 0.00 0.00 36.28 3.96
7637 7800 1.377202 GAAAGATGGCGGAGGTGCA 60.377 57.895 0.00 0.00 36.28 4.57
7638 7801 1.078143 AGAAAGATGGCGGAGGTGC 60.078 57.895 0.00 0.00 0.00 5.01
7639 7802 1.372087 GCAGAAAGATGGCGGAGGTG 61.372 60.000 0.00 0.00 0.00 4.00
7640 7803 1.078143 GCAGAAAGATGGCGGAGGT 60.078 57.895 0.00 0.00 0.00 3.85
7641 7804 2.176273 CGCAGAAAGATGGCGGAGG 61.176 63.158 0.00 0.00 46.46 4.30
7642 7805 3.403277 CGCAGAAAGATGGCGGAG 58.597 61.111 0.00 0.00 46.46 4.63
7646 7809 3.836949 TGAATTTTCGCAGAAAGATGGC 58.163 40.909 4.41 0.00 45.90 4.40
7647 7810 6.956299 ATTTGAATTTTCGCAGAAAGATGG 57.044 33.333 4.41 0.00 45.90 3.51
7648 7811 7.330208 AGGAATTTGAATTTTCGCAGAAAGATG 59.670 33.333 4.41 0.00 45.90 2.90
7649 7812 7.381323 AGGAATTTGAATTTTCGCAGAAAGAT 58.619 30.769 4.41 0.00 45.90 2.40
7650 7813 6.748132 AGGAATTTGAATTTTCGCAGAAAGA 58.252 32.000 4.41 0.00 45.90 2.52
7651 7814 8.023128 TCTAGGAATTTGAATTTTCGCAGAAAG 58.977 33.333 4.41 0.00 45.90 2.62
7652 7815 7.807907 GTCTAGGAATTTGAATTTTCGCAGAAA 59.192 33.333 0.00 0.55 45.90 2.52
7653 7816 7.174946 AGTCTAGGAATTTGAATTTTCGCAGAA 59.825 33.333 0.00 0.00 45.90 3.02
7654 7817 6.655003 AGTCTAGGAATTTGAATTTTCGCAGA 59.345 34.615 0.00 0.00 0.00 4.26
7655 7818 6.846350 AGTCTAGGAATTTGAATTTTCGCAG 58.154 36.000 0.00 0.00 0.00 5.18
7656 7819 6.817765 AGTCTAGGAATTTGAATTTTCGCA 57.182 33.333 0.00 0.00 0.00 5.10
7657 7820 8.234546 TGTAAGTCTAGGAATTTGAATTTTCGC 58.765 33.333 0.00 0.00 0.00 4.70
7658 7821 9.760660 CTGTAAGTCTAGGAATTTGAATTTTCG 57.239 33.333 0.00 0.00 0.00 3.46
7659 7822 9.561270 GCTGTAAGTCTAGGAATTTGAATTTTC 57.439 33.333 0.00 0.00 35.30 2.29
7660 7823 8.523658 GGCTGTAAGTCTAGGAATTTGAATTTT 58.476 33.333 0.00 0.00 34.11 1.82
7661 7824 7.669722 TGGCTGTAAGTCTAGGAATTTGAATTT 59.330 33.333 0.00 0.00 41.06 1.82
7662 7825 7.175104 TGGCTGTAAGTCTAGGAATTTGAATT 58.825 34.615 0.00 0.00 41.06 2.17
7663 7826 6.721318 TGGCTGTAAGTCTAGGAATTTGAAT 58.279 36.000 0.00 0.00 41.06 2.57
7664 7827 6.121776 TGGCTGTAAGTCTAGGAATTTGAA 57.878 37.500 0.00 0.00 41.06 2.69
7665 7828 5.755409 TGGCTGTAAGTCTAGGAATTTGA 57.245 39.130 0.00 0.00 41.06 2.69
7666 7829 6.599244 TGAATGGCTGTAAGTCTAGGAATTTG 59.401 38.462 0.00 0.00 41.06 2.32
7667 7830 6.721318 TGAATGGCTGTAAGTCTAGGAATTT 58.279 36.000 0.00 0.00 41.06 1.82
7668 7831 6.313519 TGAATGGCTGTAAGTCTAGGAATT 57.686 37.500 0.00 0.00 41.06 2.17
7669 7832 5.163258 CCTGAATGGCTGTAAGTCTAGGAAT 60.163 44.000 0.00 0.00 41.06 3.01
7670 7833 4.162320 CCTGAATGGCTGTAAGTCTAGGAA 59.838 45.833 0.00 0.00 41.06 3.36
7671 7834 3.706594 CCTGAATGGCTGTAAGTCTAGGA 59.293 47.826 0.00 0.00 41.06 2.94
7672 7835 3.706594 TCCTGAATGGCTGTAAGTCTAGG 59.293 47.826 0.00 0.00 41.06 3.02
7673 7836 4.739137 GCTCCTGAATGGCTGTAAGTCTAG 60.739 50.000 0.00 0.00 41.06 2.43
7674 7837 3.133003 GCTCCTGAATGGCTGTAAGTCTA 59.867 47.826 0.00 0.00 41.06 2.59
7675 7838 2.093235 GCTCCTGAATGGCTGTAAGTCT 60.093 50.000 0.00 0.00 41.06 3.24
7676 7839 2.284190 GCTCCTGAATGGCTGTAAGTC 58.716 52.381 0.00 0.00 40.66 3.01
7677 7840 1.406069 CGCTCCTGAATGGCTGTAAGT 60.406 52.381 0.00 0.00 35.30 2.24
7678 7841 1.134699 TCGCTCCTGAATGGCTGTAAG 60.135 52.381 0.00 0.00 35.26 2.34
7679 7842 0.901827 TCGCTCCTGAATGGCTGTAA 59.098 50.000 0.00 0.00 35.26 2.41
7680 7843 0.461548 CTCGCTCCTGAATGGCTGTA 59.538 55.000 0.00 0.00 35.26 2.74
7681 7844 1.220206 CTCGCTCCTGAATGGCTGT 59.780 57.895 0.00 0.00 35.26 4.40
7682 7845 0.106335 ATCTCGCTCCTGAATGGCTG 59.894 55.000 0.00 0.00 35.26 4.85
7683 7846 0.106335 CATCTCGCTCCTGAATGGCT 59.894 55.000 0.00 0.00 35.26 4.75
7684 7847 1.505477 GCATCTCGCTCCTGAATGGC 61.505 60.000 0.00 0.00 37.77 4.40
7685 7848 0.179065 TGCATCTCGCTCCTGAATGG 60.179 55.000 0.00 0.00 43.06 3.16
7686 7849 0.935898 GTGCATCTCGCTCCTGAATG 59.064 55.000 0.00 0.00 43.06 2.67
7687 7850 3.376218 GTGCATCTCGCTCCTGAAT 57.624 52.632 0.00 0.00 43.06 2.57
7688 7851 4.919653 GTGCATCTCGCTCCTGAA 57.080 55.556 0.00 0.00 43.06 3.02
7693 7856 2.279120 CGGAGGTGCATCTCGCTC 60.279 66.667 20.52 6.28 43.06 5.03
7694 7857 4.521062 GCGGAGGTGCATCTCGCT 62.521 66.667 26.16 0.00 43.06 4.93
7696 7859 3.451556 ATGGCGGAGGTGCATCTCG 62.452 63.158 20.52 16.08 36.28 4.04
7697 7860 1.596477 GATGGCGGAGGTGCATCTC 60.596 63.158 19.20 19.20 36.28 2.75
7698 7861 1.630126 AAGATGGCGGAGGTGCATCT 61.630 55.000 0.00 0.00 35.61 2.90
7699 7862 0.749454 AAAGATGGCGGAGGTGCATC 60.749 55.000 0.00 0.00 36.28 3.91
7700 7863 0.749454 GAAAGATGGCGGAGGTGCAT 60.749 55.000 0.00 0.00 36.28 3.96
7701 7864 1.377202 GAAAGATGGCGGAGGTGCA 60.377 57.895 0.00 0.00 36.28 4.57
7702 7865 1.078143 AGAAAGATGGCGGAGGTGC 60.078 57.895 0.00 0.00 0.00 5.01
7703 7866 1.372087 GCAGAAAGATGGCGGAGGTG 61.372 60.000 0.00 0.00 0.00 4.00
7704 7867 1.078143 GCAGAAAGATGGCGGAGGT 60.078 57.895 0.00 0.00 0.00 3.85
7705 7868 2.176273 CGCAGAAAGATGGCGGAGG 61.176 63.158 0.00 0.00 46.46 4.30
7706 7869 3.403277 CGCAGAAAGATGGCGGAG 58.597 61.111 0.00 0.00 46.46 4.63
7710 7873 3.836949 TGAATTTTCGCAGAAAGATGGC 58.163 40.909 4.41 0.00 45.90 4.40
7711 7874 6.956299 ATTTGAATTTTCGCAGAAAGATGG 57.044 33.333 4.41 0.00 45.90 3.51
7712 7875 7.330208 AGGAATTTGAATTTTCGCAGAAAGATG 59.670 33.333 4.41 0.00 45.90 2.90
7713 7876 7.381323 AGGAATTTGAATTTTCGCAGAAAGAT 58.619 30.769 4.41 0.00 45.90 2.40
7714 7877 6.748132 AGGAATTTGAATTTTCGCAGAAAGA 58.252 32.000 4.41 0.00 45.90 2.52
7715 7878 8.023128 TCTAGGAATTTGAATTTTCGCAGAAAG 58.977 33.333 4.41 0.00 45.90 2.62
7716 7879 7.807907 GTCTAGGAATTTGAATTTTCGCAGAAA 59.192 33.333 0.00 0.55 45.90 2.52
7717 7880 7.174946 AGTCTAGGAATTTGAATTTTCGCAGAA 59.825 33.333 0.00 0.00 45.90 3.02
7718 7881 6.655003 AGTCTAGGAATTTGAATTTTCGCAGA 59.345 34.615 0.00 0.00 0.00 4.26
7719 7882 6.846350 AGTCTAGGAATTTGAATTTTCGCAG 58.154 36.000 0.00 0.00 0.00 5.18
7720 7883 6.817765 AGTCTAGGAATTTGAATTTTCGCA 57.182 33.333 0.00 0.00 0.00 5.10
7721 7884 8.234546 TGTAAGTCTAGGAATTTGAATTTTCGC 58.765 33.333 0.00 0.00 0.00 4.70
7722 7885 9.760660 CTGTAAGTCTAGGAATTTGAATTTTCG 57.239 33.333 0.00 0.00 0.00 3.46
7723 7886 9.561270 GCTGTAAGTCTAGGAATTTGAATTTTC 57.439 33.333 0.00 0.00 35.30 2.29
7724 7887 8.523658 GGCTGTAAGTCTAGGAATTTGAATTTT 58.476 33.333 0.00 0.00 34.11 1.82
7725 7888 7.669722 TGGCTGTAAGTCTAGGAATTTGAATTT 59.330 33.333 0.00 0.00 41.06 1.82
7726 7889 7.175104 TGGCTGTAAGTCTAGGAATTTGAATT 58.825 34.615 0.00 0.00 41.06 2.17
7727 7890 6.721318 TGGCTGTAAGTCTAGGAATTTGAAT 58.279 36.000 0.00 0.00 41.06 2.57
7728 7891 6.121776 TGGCTGTAAGTCTAGGAATTTGAA 57.878 37.500 0.00 0.00 41.06 2.69
7729 7892 5.755409 TGGCTGTAAGTCTAGGAATTTGA 57.245 39.130 0.00 0.00 41.06 2.69
7730 7893 7.396540 AAATGGCTGTAAGTCTAGGAATTTG 57.603 36.000 0.00 0.00 41.06 2.32
7731 7894 8.957466 GTAAAATGGCTGTAAGTCTAGGAATTT 58.043 33.333 0.00 0.00 41.06 1.82
7732 7895 8.329502 AGTAAAATGGCTGTAAGTCTAGGAATT 58.670 33.333 0.00 0.00 41.06 2.17
7733 7896 7.770897 CAGTAAAATGGCTGTAAGTCTAGGAAT 59.229 37.037 0.00 0.00 41.06 3.01
7734 7897 7.038587 TCAGTAAAATGGCTGTAAGTCTAGGAA 60.039 37.037 0.00 0.00 41.06 3.36
7735 7898 6.439375 TCAGTAAAATGGCTGTAAGTCTAGGA 59.561 38.462 0.00 0.00 41.06 2.94
7736 7899 6.640518 TCAGTAAAATGGCTGTAAGTCTAGG 58.359 40.000 0.00 0.00 41.06 3.02
7737 7900 8.723942 AATCAGTAAAATGGCTGTAAGTCTAG 57.276 34.615 0.00 0.00 41.06 2.43
7738 7901 9.515226 AAAATCAGTAAAATGGCTGTAAGTCTA 57.485 29.630 0.00 0.00 41.06 2.59
7739 7902 8.409358 AAAATCAGTAAAATGGCTGTAAGTCT 57.591 30.769 0.00 0.00 41.06 3.24
7767 7930 3.225548 CGTTTGCGTCTGTACTACGTAA 58.774 45.455 16.33 16.33 41.95 3.18
7768 7931 2.838275 CGTTTGCGTCTGTACTACGTA 58.162 47.619 18.25 13.31 42.26 3.57
7769 7932 1.678360 CGTTTGCGTCTGTACTACGT 58.322 50.000 18.25 0.00 42.26 3.57
7770 7933 0.361184 GCGTTTGCGTCTGTACTACG 59.639 55.000 14.49 14.49 43.12 3.51
7782 7945 5.696260 TGCGTATATATATGAGCGTTTGC 57.304 39.130 14.94 0.00 43.24 3.68
7783 7946 8.335256 TGTATGCGTATATATATGAGCGTTTG 57.665 34.615 14.94 0.00 0.00 2.93
7784 7947 9.529325 AATGTATGCGTATATATATGAGCGTTT 57.471 29.630 14.94 8.85 0.00 3.60
7785 7948 9.181805 GAATGTATGCGTATATATATGAGCGTT 57.818 33.333 14.94 8.58 0.00 4.84
7786 7949 8.349983 TGAATGTATGCGTATATATATGAGCGT 58.650 33.333 14.94 17.36 0.00 5.07
7787 7950 8.728088 TGAATGTATGCGTATATATATGAGCG 57.272 34.615 14.94 6.20 0.00 5.03
7800 7963 9.847706 TGTGTTTATAAAAATGAATGTATGCGT 57.152 25.926 0.00 0.00 0.00 5.24
7806 7969 8.934825 GCATGGTGTGTTTATAAAAATGAATGT 58.065 29.630 0.00 0.00 0.00 2.71
7807 7970 8.933807 TGCATGGTGTGTTTATAAAAATGAATG 58.066 29.630 0.00 2.40 0.00 2.67
7808 7971 8.934825 GTGCATGGTGTGTTTATAAAAATGAAT 58.065 29.630 0.00 0.00 0.00 2.57
7809 7972 7.928167 TGTGCATGGTGTGTTTATAAAAATGAA 59.072 29.630 0.00 0.00 0.00 2.57
7810 7973 7.383572 GTGTGCATGGTGTGTTTATAAAAATGA 59.616 33.333 0.00 0.00 0.00 2.57
7811 7974 7.359933 GGTGTGCATGGTGTGTTTATAAAAATG 60.360 37.037 0.00 0.04 0.00 2.32
7812 7975 6.648725 GGTGTGCATGGTGTGTTTATAAAAAT 59.351 34.615 0.00 0.00 0.00 1.82
7813 7976 5.986135 GGTGTGCATGGTGTGTTTATAAAAA 59.014 36.000 0.00 0.00 0.00 1.94
7814 7977 5.069119 TGGTGTGCATGGTGTGTTTATAAAA 59.931 36.000 0.00 0.00 0.00 1.52
7815 7978 4.584743 TGGTGTGCATGGTGTGTTTATAAA 59.415 37.500 0.00 0.00 0.00 1.40
7816 7979 4.145052 TGGTGTGCATGGTGTGTTTATAA 58.855 39.130 0.00 0.00 0.00 0.98
7817 7980 3.756117 TGGTGTGCATGGTGTGTTTATA 58.244 40.909 0.00 0.00 0.00 0.98
7818 7981 2.591923 TGGTGTGCATGGTGTGTTTAT 58.408 42.857 0.00 0.00 0.00 1.40
7819 7982 2.058593 TGGTGTGCATGGTGTGTTTA 57.941 45.000 0.00 0.00 0.00 2.01
7820 7983 1.412079 ATGGTGTGCATGGTGTGTTT 58.588 45.000 0.00 0.00 0.00 2.83
7821 7984 2.161855 CTATGGTGTGCATGGTGTGTT 58.838 47.619 0.00 0.00 0.00 3.32
7822 7985 1.825090 CTATGGTGTGCATGGTGTGT 58.175 50.000 0.00 0.00 0.00 3.72
7823 7986 0.452987 GCTATGGTGTGCATGGTGTG 59.547 55.000 0.00 0.00 0.00 3.82
7824 7987 0.329261 AGCTATGGTGTGCATGGTGT 59.671 50.000 0.00 0.00 0.00 4.16
7825 7988 0.736636 CAGCTATGGTGTGCATGGTG 59.263 55.000 0.00 0.00 0.00 4.17
7826 7989 0.394762 CCAGCTATGGTGTGCATGGT 60.395 55.000 0.00 0.00 42.17 3.55
7827 7990 2.411535 CCAGCTATGGTGTGCATGG 58.588 57.895 0.00 0.00 42.17 3.66
7837 8000 4.341806 TCCCAAAATAATGTGCCAGCTATG 59.658 41.667 0.00 0.00 0.00 2.23
7838 8001 4.545678 TCCCAAAATAATGTGCCAGCTAT 58.454 39.130 0.00 0.00 0.00 2.97
7839 8002 3.974719 TCCCAAAATAATGTGCCAGCTA 58.025 40.909 0.00 0.00 0.00 3.32
7840 8003 2.818921 TCCCAAAATAATGTGCCAGCT 58.181 42.857 0.00 0.00 0.00 4.24
7841 8004 3.825143 ATCCCAAAATAATGTGCCAGC 57.175 42.857 0.00 0.00 0.00 4.85
7842 8005 6.016360 TCGATAATCCCAAAATAATGTGCCAG 60.016 38.462 0.00 0.00 0.00 4.85
7843 8006 5.830457 TCGATAATCCCAAAATAATGTGCCA 59.170 36.000 0.00 0.00 0.00 4.92
7844 8007 6.325919 TCGATAATCCCAAAATAATGTGCC 57.674 37.500 0.00 0.00 0.00 5.01
7845 8008 7.425606 ACTTCGATAATCCCAAAATAATGTGC 58.574 34.615 0.00 0.00 0.00 4.57
7846 8009 7.798516 CGACTTCGATAATCCCAAAATAATGTG 59.201 37.037 0.00 0.00 43.02 3.21
7847 8010 7.519970 GCGACTTCGATAATCCCAAAATAATGT 60.520 37.037 2.02 0.00 43.02 2.71
7848 8011 6.797033 GCGACTTCGATAATCCCAAAATAATG 59.203 38.462 2.02 0.00 43.02 1.90
7849 8012 6.710744 AGCGACTTCGATAATCCCAAAATAAT 59.289 34.615 2.02 0.00 43.02 1.28
7850 8013 6.053005 AGCGACTTCGATAATCCCAAAATAA 58.947 36.000 2.02 0.00 43.02 1.40
7851 8014 5.607477 AGCGACTTCGATAATCCCAAAATA 58.393 37.500 2.02 0.00 43.02 1.40
7852 8015 4.451900 AGCGACTTCGATAATCCCAAAAT 58.548 39.130 2.02 0.00 43.02 1.82
7853 8016 3.869065 AGCGACTTCGATAATCCCAAAA 58.131 40.909 2.02 0.00 43.02 2.44
7854 8017 3.536956 AGCGACTTCGATAATCCCAAA 57.463 42.857 2.02 0.00 43.02 3.28
7855 8018 3.382227 TGTAGCGACTTCGATAATCCCAA 59.618 43.478 2.02 0.00 42.06 4.12
7856 8019 2.953648 TGTAGCGACTTCGATAATCCCA 59.046 45.455 2.02 0.00 42.06 4.37
7857 8020 3.243301 TGTGTAGCGACTTCGATAATCCC 60.243 47.826 2.02 0.00 42.06 3.85
7858 8021 3.729716 GTGTGTAGCGACTTCGATAATCC 59.270 47.826 2.02 0.00 42.06 3.01
7859 8022 3.417969 CGTGTGTAGCGACTTCGATAATC 59.582 47.826 2.02 0.00 42.06 1.75
7860 8023 3.181503 ACGTGTGTAGCGACTTCGATAAT 60.182 43.478 2.02 0.00 42.06 1.28
7861 8024 2.160219 ACGTGTGTAGCGACTTCGATAA 59.840 45.455 2.02 0.00 42.06 1.75
7862 8025 1.733912 ACGTGTGTAGCGACTTCGATA 59.266 47.619 2.02 0.00 43.02 2.92
7863 8026 0.520404 ACGTGTGTAGCGACTTCGAT 59.480 50.000 2.02 0.00 43.02 3.59
7864 8027 0.110509 GACGTGTGTAGCGACTTCGA 60.111 55.000 2.02 0.00 43.02 3.71
7865 8028 0.110328 AGACGTGTGTAGCGACTTCG 60.110 55.000 0.00 3.40 43.27 3.79
7866 8029 2.047679 AAGACGTGTGTAGCGACTTC 57.952 50.000 0.00 0.00 39.28 3.01
7867 8030 2.124903 CAAAGACGTGTGTAGCGACTT 58.875 47.619 0.00 0.00 43.47 3.01
7868 8031 1.767289 CAAAGACGTGTGTAGCGACT 58.233 50.000 0.00 0.00 36.10 4.18
7869 8032 0.161024 GCAAAGACGTGTGTAGCGAC 59.839 55.000 0.00 0.00 0.00 5.19
7870 8033 0.249114 TGCAAAGACGTGTGTAGCGA 60.249 50.000 0.00 0.00 0.00 4.93
7871 8034 0.790207 ATGCAAAGACGTGTGTAGCG 59.210 50.000 0.00 0.00 0.00 4.26
7872 8035 1.201812 CGATGCAAAGACGTGTGTAGC 60.202 52.381 0.00 0.00 0.00 3.58
7873 8036 2.324860 TCGATGCAAAGACGTGTGTAG 58.675 47.619 0.00 0.00 0.00 2.74
7874 8037 2.425578 TCGATGCAAAGACGTGTGTA 57.574 45.000 0.00 0.00 0.00 2.90
7875 8038 1.795768 ATCGATGCAAAGACGTGTGT 58.204 45.000 0.00 0.00 0.00 3.72
7876 8039 2.923655 ACTATCGATGCAAAGACGTGTG 59.076 45.455 8.54 0.00 0.00 3.82
7877 8040 3.232213 ACTATCGATGCAAAGACGTGT 57.768 42.857 8.54 0.00 0.00 4.49
7878 8041 5.232202 ACATTACTATCGATGCAAAGACGTG 59.768 40.000 8.54 2.23 0.00 4.49
7879 8042 5.348986 ACATTACTATCGATGCAAAGACGT 58.651 37.500 8.54 0.00 0.00 4.34
7880 8043 5.687730 AGACATTACTATCGATGCAAAGACG 59.312 40.000 8.54 0.00 0.00 4.18
7881 8044 6.144724 GGAGACATTACTATCGATGCAAAGAC 59.855 42.308 8.54 0.00 0.00 3.01
7882 8045 6.040955 AGGAGACATTACTATCGATGCAAAGA 59.959 38.462 8.54 0.00 0.00 2.52
7883 8046 6.219473 AGGAGACATTACTATCGATGCAAAG 58.781 40.000 8.54 0.00 0.00 2.77
7884 8047 6.040955 AGAGGAGACATTACTATCGATGCAAA 59.959 38.462 8.54 0.00 0.00 3.68
7885 8048 5.536538 AGAGGAGACATTACTATCGATGCAA 59.463 40.000 8.54 0.00 0.00 4.08
7886 8049 5.073428 AGAGGAGACATTACTATCGATGCA 58.927 41.667 8.54 0.00 0.00 3.96
7887 8050 5.182190 TGAGAGGAGACATTACTATCGATGC 59.818 44.000 8.54 0.00 0.00 3.91
7888 8051 6.809630 TGAGAGGAGACATTACTATCGATG 57.190 41.667 8.54 0.52 0.00 3.84
7889 8052 7.667635 TCATTGAGAGGAGACATTACTATCGAT 59.332 37.037 2.16 2.16 29.15 3.59
7890 8053 6.998673 TCATTGAGAGGAGACATTACTATCGA 59.001 38.462 0.00 0.00 0.00 3.59
7891 8054 7.208225 TCATTGAGAGGAGACATTACTATCG 57.792 40.000 0.00 0.00 0.00 2.92
7892 8055 7.593273 CGTTCATTGAGAGGAGACATTACTATC 59.407 40.741 0.00 0.00 0.00 2.08
7893 8056 7.429633 CGTTCATTGAGAGGAGACATTACTAT 58.570 38.462 0.00 0.00 0.00 2.12
7894 8057 6.680625 GCGTTCATTGAGAGGAGACATTACTA 60.681 42.308 0.00 0.00 0.00 1.82
7895 8058 5.655488 CGTTCATTGAGAGGAGACATTACT 58.345 41.667 0.00 0.00 0.00 2.24
7896 8059 4.268884 GCGTTCATTGAGAGGAGACATTAC 59.731 45.833 0.00 0.00 0.00 1.89
7897 8060 4.081697 TGCGTTCATTGAGAGGAGACATTA 60.082 41.667 0.00 0.00 0.00 1.90
7898 8061 3.265791 GCGTTCATTGAGAGGAGACATT 58.734 45.455 0.00 0.00 0.00 2.71
7899 8062 2.234661 TGCGTTCATTGAGAGGAGACAT 59.765 45.455 0.00 0.00 0.00 3.06
7900 8063 1.618343 TGCGTTCATTGAGAGGAGACA 59.382 47.619 0.00 0.00 0.00 3.41
7901 8064 1.996191 GTGCGTTCATTGAGAGGAGAC 59.004 52.381 0.00 0.00 0.00 3.36
7902 8065 1.618343 TGTGCGTTCATTGAGAGGAGA 59.382 47.619 0.00 0.00 0.00 3.71
7903 8066 2.084610 TGTGCGTTCATTGAGAGGAG 57.915 50.000 0.00 0.00 0.00 3.69
7904 8067 2.768253 ATGTGCGTTCATTGAGAGGA 57.232 45.000 0.00 0.00 0.00 3.71
7905 8068 3.525537 AGTATGTGCGTTCATTGAGAGG 58.474 45.455 0.49 0.00 0.00 3.69
7906 8069 3.241553 CGAGTATGTGCGTTCATTGAGAG 59.758 47.826 0.49 0.00 0.00 3.20
7907 8070 3.119637 TCGAGTATGTGCGTTCATTGAGA 60.120 43.478 0.49 0.00 0.00 3.27
7908 8071 3.179048 TCGAGTATGTGCGTTCATTGAG 58.821 45.455 0.49 0.00 0.00 3.02
7909 8072 3.224884 TCGAGTATGTGCGTTCATTGA 57.775 42.857 0.49 0.00 0.00 2.57
7910 8073 3.989705 TTCGAGTATGTGCGTTCATTG 57.010 42.857 0.49 0.00 0.00 2.82
7911 8074 3.370978 CCTTTCGAGTATGTGCGTTCATT 59.629 43.478 0.49 0.00 0.00 2.57
7912 8075 2.930040 CCTTTCGAGTATGTGCGTTCAT 59.070 45.455 0.00 0.87 0.00 2.57
7913 8076 2.288579 ACCTTTCGAGTATGTGCGTTCA 60.289 45.455 0.00 0.00 0.00 3.18
7914 8077 2.334838 ACCTTTCGAGTATGTGCGTTC 58.665 47.619 0.00 0.00 0.00 3.95
7915 8078 2.029290 AGACCTTTCGAGTATGTGCGTT 60.029 45.455 0.00 0.00 0.00 4.84
7916 8079 1.544691 AGACCTTTCGAGTATGTGCGT 59.455 47.619 0.00 0.00 0.00 5.24
7917 8080 2.279582 AGACCTTTCGAGTATGTGCG 57.720 50.000 0.00 0.00 0.00 5.34
7918 8081 6.663944 ATTTTAGACCTTTCGAGTATGTGC 57.336 37.500 0.00 0.00 0.00 4.57
7924 8087 9.720769 TCTGAATTTATTTTAGACCTTTCGAGT 57.279 29.630 0.00 0.00 0.00 4.18
7944 8107 9.878599 CTTTGTTAGTGTCGTATTTTTCTGAAT 57.121 29.630 0.00 0.00 0.00 2.57
7945 8108 8.885722 ACTTTGTTAGTGTCGTATTTTTCTGAA 58.114 29.630 0.00 0.00 35.19 3.02
7946 8109 8.428186 ACTTTGTTAGTGTCGTATTTTTCTGA 57.572 30.769 0.00 0.00 35.19 3.27
7947 8110 8.548721 AGACTTTGTTAGTGTCGTATTTTTCTG 58.451 33.333 0.00 0.00 37.17 3.02
7948 8111 8.658499 AGACTTTGTTAGTGTCGTATTTTTCT 57.342 30.769 0.00 0.00 37.17 2.52
7951 8114 9.701098 TCATAGACTTTGTTAGTGTCGTATTTT 57.299 29.630 0.00 0.00 37.17 1.82
7952 8115 9.136952 GTCATAGACTTTGTTAGTGTCGTATTT 57.863 33.333 0.00 0.00 37.17 1.40
7953 8116 8.521176 AGTCATAGACTTTGTTAGTGTCGTATT 58.479 33.333 0.00 0.00 40.28 1.89
7954 8117 8.053026 AGTCATAGACTTTGTTAGTGTCGTAT 57.947 34.615 0.00 0.00 40.28 3.06
7955 8118 7.444629 AGTCATAGACTTTGTTAGTGTCGTA 57.555 36.000 0.00 0.00 40.28 3.43
7956 8119 6.328641 AGTCATAGACTTTGTTAGTGTCGT 57.671 37.500 0.00 0.00 40.28 4.34
7969 8132 4.221703 CACCCAGAGTTCAAGTCATAGACT 59.778 45.833 0.00 0.00 45.64 3.24
7970 8133 4.499183 CACCCAGAGTTCAAGTCATAGAC 58.501 47.826 0.00 0.00 0.00 2.59
7971 8134 3.515502 CCACCCAGAGTTCAAGTCATAGA 59.484 47.826 0.00 0.00 0.00 1.98
7972 8135 3.369892 CCCACCCAGAGTTCAAGTCATAG 60.370 52.174 0.00 0.00 0.00 2.23
7973 8136 2.571653 CCCACCCAGAGTTCAAGTCATA 59.428 50.000 0.00 0.00 0.00 2.15
7974 8137 1.352352 CCCACCCAGAGTTCAAGTCAT 59.648 52.381 0.00 0.00 0.00 3.06
7975 8138 0.764890 CCCACCCAGAGTTCAAGTCA 59.235 55.000 0.00 0.00 0.00 3.41
7976 8139 1.056660 TCCCACCCAGAGTTCAAGTC 58.943 55.000 0.00 0.00 0.00 3.01
7977 8140 1.747444 ATCCCACCCAGAGTTCAAGT 58.253 50.000 0.00 0.00 0.00 3.16
7978 8141 2.171448 CCTATCCCACCCAGAGTTCAAG 59.829 54.545 0.00 0.00 0.00 3.02
7979 8142 2.196595 CCTATCCCACCCAGAGTTCAA 58.803 52.381 0.00 0.00 0.00 2.69
7980 8143 1.625228 CCCTATCCCACCCAGAGTTCA 60.625 57.143 0.00 0.00 0.00 3.18
7981 8144 1.132500 CCCTATCCCACCCAGAGTTC 58.868 60.000 0.00 0.00 0.00 3.01
7982 8145 0.722676 TCCCTATCCCACCCAGAGTT 59.277 55.000 0.00 0.00 0.00 3.01
7983 8146 0.952659 ATCCCTATCCCACCCAGAGT 59.047 55.000 0.00 0.00 0.00 3.24
7984 8147 3.246130 TGATATCCCTATCCCACCCAGAG 60.246 52.174 0.00 0.00 34.03 3.35
7985 8148 2.733071 TGATATCCCTATCCCACCCAGA 59.267 50.000 0.00 0.00 34.03 3.86
7986 8149 3.205519 TGATATCCCTATCCCACCCAG 57.794 52.381 0.00 0.00 34.03 4.45
7987 8150 3.851976 CAATGATATCCCTATCCCACCCA 59.148 47.826 0.00 0.00 34.03 4.51
7988 8151 3.852578 ACAATGATATCCCTATCCCACCC 59.147 47.826 0.00 0.00 34.03 4.61
7989 8152 4.785376 AGACAATGATATCCCTATCCCACC 59.215 45.833 0.00 0.00 34.03 4.61
7990 8153 6.380079 AAGACAATGATATCCCTATCCCAC 57.620 41.667 0.00 0.00 34.03 4.61
7991 8154 7.406620 AAAAGACAATGATATCCCTATCCCA 57.593 36.000 0.00 0.00 34.03 4.37
7992 8155 9.807921 TTAAAAAGACAATGATATCCCTATCCC 57.192 33.333 0.00 0.00 34.03 3.85
8019 8182 9.515020 GCGAATATTTAACAAAAGATTGGATGA 57.485 29.630 4.96 0.00 41.01 2.92
8020 8183 8.471457 CGCGAATATTTAACAAAAGATTGGATG 58.529 33.333 0.00 0.00 41.01 3.51
8021 8184 7.167468 GCGCGAATATTTAACAAAAGATTGGAT 59.833 33.333 12.10 0.00 41.01 3.41
8022 8185 6.470877 GCGCGAATATTTAACAAAAGATTGGA 59.529 34.615 12.10 0.00 41.01 3.53
8023 8186 6.472163 AGCGCGAATATTTAACAAAAGATTGG 59.528 34.615 12.10 0.00 41.01 3.16
8024 8187 7.322260 CAGCGCGAATATTTAACAAAAGATTG 58.678 34.615 12.10 0.00 42.46 2.67
8025 8188 6.472163 CCAGCGCGAATATTTAACAAAAGATT 59.528 34.615 12.10 0.00 0.00 2.40
8026 8189 5.971202 CCAGCGCGAATATTTAACAAAAGAT 59.029 36.000 12.10 0.00 0.00 2.40
8027 8190 5.328691 CCAGCGCGAATATTTAACAAAAGA 58.671 37.500 12.10 0.00 0.00 2.52
8028 8191 4.499040 CCCAGCGCGAATATTTAACAAAAG 59.501 41.667 12.10 0.00 0.00 2.27
8029 8192 4.416620 CCCAGCGCGAATATTTAACAAAA 58.583 39.130 12.10 0.00 0.00 2.44
8030 8193 3.732471 GCCCAGCGCGAATATTTAACAAA 60.732 43.478 12.10 0.00 0.00 2.83
8031 8194 2.223386 GCCCAGCGCGAATATTTAACAA 60.223 45.455 12.10 0.00 0.00 2.83
8032 8195 1.332375 GCCCAGCGCGAATATTTAACA 59.668 47.619 12.10 0.00 0.00 2.41
8033 8196 1.602377 AGCCCAGCGCGAATATTTAAC 59.398 47.619 12.10 0.00 44.76 2.01
8034 8197 1.601903 CAGCCCAGCGCGAATATTTAA 59.398 47.619 12.10 0.00 44.76 1.52
8035 8198 1.225855 CAGCCCAGCGCGAATATTTA 58.774 50.000 12.10 0.00 44.76 1.40
8036 8199 2.024918 CAGCCCAGCGCGAATATTT 58.975 52.632 12.10 0.00 44.76 1.40
8037 8200 2.546494 GCAGCCCAGCGCGAATATT 61.546 57.895 12.10 0.00 44.76 1.28
8038 8201 2.974698 GCAGCCCAGCGCGAATAT 60.975 61.111 12.10 0.00 44.76 1.28
8039 8202 3.755526 ATGCAGCCCAGCGCGAATA 62.756 57.895 12.10 0.00 44.76 1.75
8043 8206 4.897357 TAGATGCAGCCCAGCGCG 62.897 66.667 0.00 0.00 44.76 6.86
8044 8207 1.895707 AATAGATGCAGCCCAGCGC 60.896 57.895 0.00 0.00 37.31 5.92
8045 8208 1.947013 CAATAGATGCAGCCCAGCG 59.053 57.895 0.00 0.00 37.31 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.