Multiple sequence alignment - TraesCS2D01G286000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G286000 chr2D 100.000 5170 0 0 1 5170 364170696 364165527 0.000000e+00 9548.0
1 TraesCS2D01G286000 chr2D 94.330 194 10 1 2848 3040 297457033 297456840 3.910000e-76 296.0
2 TraesCS2D01G286000 chr2B 95.748 2869 73 25 1 2852 432560262 432557426 0.000000e+00 4577.0
3 TraesCS2D01G286000 chr2B 94.977 2130 75 10 3047 5169 432557427 432555323 0.000000e+00 3312.0
4 TraesCS2D01G286000 chr2B 94.330 194 10 1 2848 3040 364490416 364490223 3.910000e-76 296.0
5 TraesCS2D01G286000 chr2B 85.019 267 27 5 3050 3316 296082133 296081880 5.140000e-65 259.0
6 TraesCS2D01G286000 chr2A 93.317 2843 85 45 54 2852 490666414 490663633 0.000000e+00 4100.0
7 TraesCS2D01G286000 chr2A 97.553 1839 36 6 3336 5169 490662984 490661150 0.000000e+00 3138.0
8 TraesCS2D01G286000 chr2A 93.023 301 11 3 3047 3347 490663634 490663344 1.030000e-116 431.0
9 TraesCS2D01G286000 chr4A 86.059 373 42 8 2480 2852 660476980 660476618 4.850000e-105 392.0
10 TraesCS2D01G286000 chr4A 85.791 373 40 9 2480 2852 621286700 621287059 2.920000e-102 383.0
11 TraesCS2D01G286000 chr4A 94.483 145 8 0 2196 2340 660477120 660476976 1.870000e-54 224.0
12 TraesCS2D01G286000 chr4A 88.462 182 19 2 3047 3227 350844258 350844438 8.720000e-53 219.0
13 TraesCS2D01G286000 chr4A 92.742 124 9 0 1995 2118 660477242 660477119 4.110000e-41 180.0
14 TraesCS2D01G286000 chr7A 86.059 373 39 10 2480 2852 221917930 221917571 6.280000e-104 388.0
15 TraesCS2D01G286000 chr7A 94.483 145 8 0 2196 2340 656726433 656726577 1.870000e-54 224.0
16 TraesCS2D01G286000 chr7A 93.151 146 9 1 2196 2340 221918071 221917926 4.060000e-51 213.0
17 TraesCS2D01G286000 chr7A 92.742 124 9 0 1995 2118 221918193 221918070 4.110000e-41 180.0
18 TraesCS2D01G286000 chr6B 85.561 374 43 9 2480 2852 174128457 174128094 1.050000e-101 381.0
19 TraesCS2D01G286000 chr6B 88.318 214 17 7 2480 2692 90027177 90026971 3.090000e-62 250.0
20 TraesCS2D01G286000 chr6B 94.483 145 8 0 2196 2340 174128597 174128453 1.870000e-54 224.0
21 TraesCS2D01G286000 chr6B 92.742 124 9 0 1995 2118 717023366 717023243 4.110000e-41 180.0
22 TraesCS2D01G286000 chr6B 92.742 124 9 0 1995 2118 717040004 717039881 4.110000e-41 180.0
23 TraesCS2D01G286000 chr6B 92.742 124 9 0 1995 2118 717056492 717056369 4.110000e-41 180.0
24 TraesCS2D01G286000 chr4B 85.333 375 41 11 2480 2852 552769258 552768896 4.890000e-100 375.0
25 TraesCS2D01G286000 chr4B 93.750 144 8 1 2197 2340 552769396 552769254 1.130000e-51 215.0
26 TraesCS2D01G286000 chr1B 84.718 373 46 9 2480 2852 119629929 119629568 3.810000e-96 363.0
27 TraesCS2D01G286000 chr1B 94.483 145 8 0 2196 2340 119630069 119629925 1.870000e-54 224.0
28 TraesCS2D01G286000 chr1B 92.742 124 9 0 1995 2118 119630191 119630068 4.110000e-41 180.0
29 TraesCS2D01G286000 chr3D 95.812 191 7 1 2851 3040 258296392 258296202 1.810000e-79 307.0
30 TraesCS2D01G286000 chr3D 86.667 270 29 1 3047 3316 405520686 405520948 5.060000e-75 292.0
31 TraesCS2D01G286000 chr3D 86.420 243 26 1 3072 3314 141471840 141472075 5.140000e-65 259.0
32 TraesCS2D01G286000 chr6D 94.872 195 8 2 2848 3040 96886980 96887174 2.340000e-78 303.0
33 TraesCS2D01G286000 chr6D 86.891 267 28 1 3050 3316 38567066 38566807 5.060000e-75 292.0
34 TraesCS2D01G286000 chr6D 93.846 195 11 1 2847 3040 238848697 238848503 5.060000e-75 292.0
35 TraesCS2D01G286000 chr6D 85.926 270 26 4 3047 3316 455465220 455465477 1.420000e-70 278.0
36 TraesCS2D01G286000 chr6D 95.413 109 5 0 2010 2118 38567686 38567578 1.910000e-39 174.0
37 TraesCS2D01G286000 chr7D 94.764 191 9 1 2851 3040 346795145 346794955 3.910000e-76 296.0
38 TraesCS2D01G286000 chr1D 93.909 197 10 2 2848 3043 277751159 277751354 3.910000e-76 296.0
39 TraesCS2D01G286000 chr1D 93.878 196 9 2 2848 3040 287169193 287169388 5.060000e-75 292.0
40 TraesCS2D01G286000 chr1D 90.698 43 2 1 49 91 461205422 461205462 7.230000e-04 56.5
41 TraesCS2D01G286000 chr5D 93.401 197 11 2 2848 3043 471374208 471374403 1.820000e-74 291.0
42 TraesCS2D01G286000 chr5D 81.419 296 40 12 1125 1416 498778624 498778340 1.450000e-55 228.0
43 TraesCS2D01G286000 chr5B 85.039 254 30 4 3058 3310 166649643 166649397 8.590000e-63 252.0
44 TraesCS2D01G286000 chr5B 82.206 281 35 12 1138 1416 618476541 618476274 1.450000e-55 228.0
45 TraesCS2D01G286000 chr5A 81.879 298 35 14 1125 1416 623215683 623215399 3.110000e-57 233.0
46 TraesCS2D01G286000 chr5A 83.012 259 36 4 3052 3310 109658008 109657758 1.450000e-55 228.0
47 TraesCS2D01G286000 chr7B 94.326 141 7 1 2200 2340 418199112 418198973 1.130000e-51 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G286000 chr2D 364165527 364170696 5169 True 9548.000000 9548 100.000000 1 5170 1 chr2D.!!$R2 5169
1 TraesCS2D01G286000 chr2B 432555323 432560262 4939 True 3944.500000 4577 95.362500 1 5169 2 chr2B.!!$R3 5168
2 TraesCS2D01G286000 chr2A 490661150 490666414 5264 True 2556.333333 4100 94.631000 54 5169 3 chr2A.!!$R1 5115
3 TraesCS2D01G286000 chr4A 660476618 660477242 624 True 265.333333 392 91.094667 1995 2852 3 chr4A.!!$R1 857
4 TraesCS2D01G286000 chr7A 221917571 221918193 622 True 260.333333 388 90.650667 1995 2852 3 chr7A.!!$R1 857
5 TraesCS2D01G286000 chr6B 174128094 174128597 503 True 302.500000 381 90.022000 2196 2852 2 chr6B.!!$R5 656
6 TraesCS2D01G286000 chr4B 552768896 552769396 500 True 295.000000 375 89.541500 2197 2852 2 chr4B.!!$R1 655
7 TraesCS2D01G286000 chr1B 119629568 119630191 623 True 255.666667 363 90.647667 1995 2852 3 chr1B.!!$R1 857
8 TraesCS2D01G286000 chr6D 38566807 38567686 879 True 233.000000 292 91.152000 2010 3316 2 chr6D.!!$R2 1306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 421 1.761198 GGATAACGTGAGGCCTTAGGT 59.239 52.381 16.47 16.47 0.0 3.08 F
1934 1968 0.313672 TTGGTGCTTGATTTGCCGTC 59.686 50.000 0.00 0.00 0.0 4.79 F
2903 2973 0.035317 TGGTGTGTCTGTCATCCTGC 59.965 55.000 0.00 0.00 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2006 0.528249 CAACATGCCCCTAATTGCGC 60.528 55.000 0.00 0.0 0.00 6.09 R
2909 2979 0.033011 AGATATAGATCGGGCGGCCT 60.033 55.000 27.04 8.2 37.15 5.19 R
4332 4777 3.675348 TGCATCTCCCATGAGGAAAAT 57.325 42.857 0.00 0.0 46.94 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 6.741358 GTCTACGAACATGGCTGTAATTTTTC 59.259 38.462 0.00 0.00 33.36 2.29
369 380 5.119694 AGAAATGGTTCGAAGAGGCTATTC 58.880 41.667 11.78 11.78 38.90 1.75
406 421 1.761198 GGATAACGTGAGGCCTTAGGT 59.239 52.381 16.47 16.47 0.00 3.08
538 553 6.183360 GCGACCCTTACAATTATTTCATCACA 60.183 38.462 0.00 0.00 0.00 3.58
564 585 4.708726 AAAAGCAGAGGATCCGAATTTG 57.291 40.909 5.98 3.08 33.66 2.32
742 769 4.541250 TGGAATTGCCCTCCATTAATCT 57.459 40.909 0.00 0.00 38.07 2.40
854 881 4.963628 ACCTAATTAAGACCACTCTCTCCC 59.036 45.833 0.00 0.00 0.00 4.30
942 969 2.552373 CCCTTCCCTCCACACTTGTTAC 60.552 54.545 0.00 0.00 0.00 2.50
1672 1699 2.094286 CCATATCCGTCTCCATCTCAGC 60.094 54.545 0.00 0.00 0.00 4.26
1673 1700 1.621992 TATCCGTCTCCATCTCAGCC 58.378 55.000 0.00 0.00 0.00 4.85
1678 1705 4.598894 CTCCATCTCAGCCGCCCG 62.599 72.222 0.00 0.00 0.00 6.13
1784 1818 2.666190 GTGCAGTTGAGCCGCTGA 60.666 61.111 0.00 0.00 34.87 4.26
1837 1871 4.575236 TGAGCTTCATCGGTAGTACAGTAG 59.425 45.833 2.06 0.00 0.00 2.57
1838 1872 3.315749 AGCTTCATCGGTAGTACAGTAGC 59.684 47.826 2.06 6.97 0.00 3.58
1840 1874 4.599047 CTTCATCGGTAGTACAGTAGCAC 58.401 47.826 2.06 0.00 0.00 4.40
1842 1876 4.011698 TCATCGGTAGTACAGTAGCACAA 58.988 43.478 2.06 0.00 0.00 3.33
1843 1877 4.095932 TCATCGGTAGTACAGTAGCACAAG 59.904 45.833 2.06 0.00 0.00 3.16
1844 1878 3.678289 TCGGTAGTACAGTAGCACAAGA 58.322 45.455 2.06 0.00 0.00 3.02
1845 1879 4.267536 TCGGTAGTACAGTAGCACAAGAT 58.732 43.478 2.06 0.00 0.00 2.40
1846 1880 4.703575 TCGGTAGTACAGTAGCACAAGATT 59.296 41.667 2.06 0.00 0.00 2.40
1847 1881 5.184479 TCGGTAGTACAGTAGCACAAGATTT 59.816 40.000 2.06 0.00 0.00 2.17
1848 1882 5.515626 CGGTAGTACAGTAGCACAAGATTTC 59.484 44.000 2.06 0.00 0.00 2.17
1849 1883 5.515626 GGTAGTACAGTAGCACAAGATTTCG 59.484 44.000 2.06 0.00 0.00 3.46
1850 1884 5.135508 AGTACAGTAGCACAAGATTTCGT 57.864 39.130 0.00 0.00 0.00 3.85
1853 1887 3.006967 ACAGTAGCACAAGATTTCGTCCT 59.993 43.478 0.00 0.00 0.00 3.85
1883 1917 1.327507 GCGCAAATTTCGTCTTGGAC 58.672 50.000 0.30 0.00 0.00 4.02
1884 1918 1.069227 GCGCAAATTTCGTCTTGGACT 60.069 47.619 0.30 0.00 0.00 3.85
1903 1937 2.887152 ACTTGTGACCTTTTCTGCATCC 59.113 45.455 0.00 0.00 0.00 3.51
1920 1954 5.239351 TGCATCCAAGAATTTGATTTGGTG 58.761 37.500 10.05 9.15 41.61 4.17
1925 1959 5.070180 TCCAAGAATTTGATTTGGTGCTTGA 59.930 36.000 0.00 0.00 41.61 3.02
1926 1960 5.935789 CCAAGAATTTGATTTGGTGCTTGAT 59.064 36.000 0.00 0.00 37.24 2.57
1927 1961 6.428771 CCAAGAATTTGATTTGGTGCTTGATT 59.571 34.615 0.00 0.00 37.24 2.57
1928 1962 7.040961 CCAAGAATTTGATTTGGTGCTTGATTT 60.041 33.333 0.00 0.00 37.24 2.17
1929 1963 7.429636 AGAATTTGATTTGGTGCTTGATTTG 57.570 32.000 0.00 0.00 0.00 2.32
1930 1964 5.616488 ATTTGATTTGGTGCTTGATTTGC 57.384 34.783 0.00 0.00 0.00 3.68
1931 1965 3.042871 TGATTTGGTGCTTGATTTGCC 57.957 42.857 0.00 0.00 0.00 4.52
1932 1966 1.994779 GATTTGGTGCTTGATTTGCCG 59.005 47.619 0.00 0.00 0.00 5.69
1933 1967 0.749649 TTTGGTGCTTGATTTGCCGT 59.250 45.000 0.00 0.00 0.00 5.68
1934 1968 0.313672 TTGGTGCTTGATTTGCCGTC 59.686 50.000 0.00 0.00 0.00 4.79
1935 1969 0.537143 TGGTGCTTGATTTGCCGTCT 60.537 50.000 0.00 0.00 0.00 4.18
1936 1970 0.598065 GGTGCTTGATTTGCCGTCTT 59.402 50.000 0.00 0.00 0.00 3.01
1937 1971 1.666888 GGTGCTTGATTTGCCGTCTTG 60.667 52.381 0.00 0.00 0.00 3.02
1950 1992 3.006430 TGCCGTCTTGATGTGTTCTTCTA 59.994 43.478 0.00 0.00 0.00 2.10
1964 2006 8.378172 TGTGTTCTTCTAATACACAAAAGAGG 57.622 34.615 4.94 0.00 46.42 3.69
1969 2011 4.320023 TCTAATACACAAAAGAGGCGCAA 58.680 39.130 10.83 0.00 0.00 4.85
1986 2031 2.735126 CGCAATTAGGGGCATGTTGAAC 60.735 50.000 0.00 0.00 0.00 3.18
2093 2138 0.328258 GGGGTGACAACTATGCCAGT 59.672 55.000 0.00 0.00 40.05 4.00
2279 2333 3.609853 TGATTCCTGGAGTTACATGTGC 58.390 45.455 9.11 1.02 0.00 4.57
2285 2339 3.261580 CTGGAGTTACATGTGCGATTGA 58.738 45.455 9.11 0.00 0.00 2.57
2474 2532 6.019108 AGATTTTCCCTTCCATACTTTTGCT 58.981 36.000 0.00 0.00 0.00 3.91
2750 2817 7.581213 TGCCTCAGTTTCATTAAGAAGAAAA 57.419 32.000 0.00 0.00 37.57 2.29
2751 2818 8.006298 TGCCTCAGTTTCATTAAGAAGAAAAA 57.994 30.769 0.00 0.00 37.57 1.94
2820 2888 3.119193 CCGCAGGCAACAAACACT 58.881 55.556 0.00 0.00 46.14 3.55
2852 2922 6.183360 CGGCCTGTTTTCAGTTGACAATATAT 60.183 38.462 0.00 0.00 45.68 0.86
2853 2923 7.196331 GGCCTGTTTTCAGTTGACAATATATC 58.804 38.462 0.00 0.00 45.68 1.63
2854 2924 7.067494 GGCCTGTTTTCAGTTGACAATATATCT 59.933 37.037 0.00 0.00 45.68 1.98
2855 2925 9.109393 GCCTGTTTTCAGTTGACAATATATCTA 57.891 33.333 0.00 0.00 45.68 1.98
2876 2946 7.715265 TCTACTCTTACAAAAAGCAGAGTTG 57.285 36.000 6.03 4.91 42.79 3.16
2877 2947 5.757850 ACTCTTACAAAAAGCAGAGTTGG 57.242 39.130 0.00 0.00 42.79 3.77
2878 2948 5.193679 ACTCTTACAAAAAGCAGAGTTGGT 58.806 37.500 0.00 0.00 42.79 3.67
2879 2949 5.066505 ACTCTTACAAAAAGCAGAGTTGGTG 59.933 40.000 0.00 0.00 42.79 4.17
2880 2950 5.189928 TCTTACAAAAAGCAGAGTTGGTGA 58.810 37.500 0.00 0.00 34.72 4.02
2881 2951 5.827797 TCTTACAAAAAGCAGAGTTGGTGAT 59.172 36.000 0.00 0.00 34.72 3.06
2882 2952 4.311816 ACAAAAAGCAGAGTTGGTGATG 57.688 40.909 0.00 0.00 34.72 3.07
2883 2953 3.953612 ACAAAAAGCAGAGTTGGTGATGA 59.046 39.130 0.00 0.00 34.72 2.92
2884 2954 4.586001 ACAAAAAGCAGAGTTGGTGATGAT 59.414 37.500 0.00 0.00 34.72 2.45
2885 2955 4.778534 AAAAGCAGAGTTGGTGATGATG 57.221 40.909 0.00 0.00 34.72 3.07
2886 2956 2.414994 AGCAGAGTTGGTGATGATGG 57.585 50.000 0.00 0.00 32.86 3.51
2887 2957 1.632409 AGCAGAGTTGGTGATGATGGT 59.368 47.619 0.00 0.00 32.86 3.55
2888 2958 1.741706 GCAGAGTTGGTGATGATGGTG 59.258 52.381 0.00 0.00 0.00 4.17
2889 2959 2.877300 GCAGAGTTGGTGATGATGGTGT 60.877 50.000 0.00 0.00 0.00 4.16
2890 2960 2.745821 CAGAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 0.00 3.82
2891 2961 2.373169 AGAGTTGGTGATGATGGTGTGT 59.627 45.455 0.00 0.00 0.00 3.72
2892 2962 2.744202 GAGTTGGTGATGATGGTGTGTC 59.256 50.000 0.00 0.00 0.00 3.67
2893 2963 2.373169 AGTTGGTGATGATGGTGTGTCT 59.627 45.455 0.00 0.00 0.00 3.41
2894 2964 2.477845 TGGTGATGATGGTGTGTCTG 57.522 50.000 0.00 0.00 0.00 3.51
2895 2965 1.699083 TGGTGATGATGGTGTGTCTGT 59.301 47.619 0.00 0.00 0.00 3.41
2896 2966 2.289631 TGGTGATGATGGTGTGTCTGTC 60.290 50.000 0.00 0.00 0.00 3.51
2897 2967 2.289631 GGTGATGATGGTGTGTCTGTCA 60.290 50.000 0.00 0.00 0.00 3.58
2898 2968 3.603532 GTGATGATGGTGTGTCTGTCAT 58.396 45.455 0.00 0.00 32.59 3.06
2899 2969 3.620374 GTGATGATGGTGTGTCTGTCATC 59.380 47.826 6.69 6.69 43.29 2.92
2900 2970 2.768253 TGATGGTGTGTCTGTCATCC 57.232 50.000 0.00 0.00 36.21 3.51
2901 2971 2.259917 TGATGGTGTGTCTGTCATCCT 58.740 47.619 0.00 0.00 36.21 3.24
2902 2972 2.027837 TGATGGTGTGTCTGTCATCCTG 60.028 50.000 0.00 0.00 36.21 3.86
2903 2973 0.035317 TGGTGTGTCTGTCATCCTGC 59.965 55.000 0.00 0.00 0.00 4.85
2904 2974 0.035317 GGTGTGTCTGTCATCCTGCA 59.965 55.000 0.00 0.00 0.00 4.41
2905 2975 1.543208 GGTGTGTCTGTCATCCTGCAA 60.543 52.381 0.00 0.00 0.00 4.08
2906 2976 2.430465 GTGTGTCTGTCATCCTGCAAT 58.570 47.619 0.00 0.00 0.00 3.56
2907 2977 3.599343 GTGTGTCTGTCATCCTGCAATA 58.401 45.455 0.00 0.00 0.00 1.90
2908 2978 4.194640 GTGTGTCTGTCATCCTGCAATAT 58.805 43.478 0.00 0.00 0.00 1.28
2909 2979 5.359756 GTGTGTCTGTCATCCTGCAATATA 58.640 41.667 0.00 0.00 0.00 0.86
2910 2980 5.464722 GTGTGTCTGTCATCCTGCAATATAG 59.535 44.000 0.00 0.00 0.00 1.31
2911 2981 4.993584 GTGTCTGTCATCCTGCAATATAGG 59.006 45.833 0.00 0.00 36.63 2.57
2912 2982 3.999663 GTCTGTCATCCTGCAATATAGGC 59.000 47.826 0.00 0.00 35.23 3.93
2913 2983 3.008375 TCTGTCATCCTGCAATATAGGCC 59.992 47.826 0.00 0.00 35.23 5.19
2914 2984 2.289631 TGTCATCCTGCAATATAGGCCG 60.290 50.000 0.00 0.00 35.23 6.13
2915 2985 1.089920 CATCCTGCAATATAGGCCGC 58.910 55.000 0.00 0.00 35.23 6.53
2916 2986 0.035056 ATCCTGCAATATAGGCCGCC 60.035 55.000 0.00 0.00 35.23 6.13
2917 2987 1.675641 CCTGCAATATAGGCCGCCC 60.676 63.158 5.55 0.00 0.00 6.13
2918 2988 2.031919 TGCAATATAGGCCGCCCG 59.968 61.111 5.55 0.00 35.76 6.13
2919 2989 2.345991 GCAATATAGGCCGCCCGA 59.654 61.111 5.55 0.00 35.76 5.14
2920 2990 1.078426 GCAATATAGGCCGCCCGAT 60.078 57.895 5.55 2.48 35.76 4.18
2921 2991 1.090052 GCAATATAGGCCGCCCGATC 61.090 60.000 5.55 0.00 35.76 3.69
2922 2992 0.537188 CAATATAGGCCGCCCGATCT 59.463 55.000 5.55 0.00 35.76 2.75
2923 2993 1.754803 CAATATAGGCCGCCCGATCTA 59.245 52.381 5.55 0.00 35.76 1.98
2924 2994 2.365617 CAATATAGGCCGCCCGATCTAT 59.634 50.000 5.55 0.00 35.76 1.98
2925 2995 3.520691 ATATAGGCCGCCCGATCTATA 57.479 47.619 5.55 1.78 35.76 1.31
2926 2996 2.383442 ATAGGCCGCCCGATCTATAT 57.617 50.000 5.55 0.00 35.76 0.86
2927 2997 1.688772 TAGGCCGCCCGATCTATATC 58.311 55.000 5.55 0.00 35.76 1.63
2928 2998 0.033011 AGGCCGCCCGATCTATATCT 60.033 55.000 5.55 0.00 35.76 1.98
2929 2999 1.214673 AGGCCGCCCGATCTATATCTA 59.785 52.381 5.55 0.00 35.76 1.98
2930 3000 2.029623 GGCCGCCCGATCTATATCTAA 58.970 52.381 0.00 0.00 0.00 2.10
2931 3001 2.223758 GGCCGCCCGATCTATATCTAAC 60.224 54.545 0.00 0.00 0.00 2.34
2932 3002 2.541178 GCCGCCCGATCTATATCTAACG 60.541 54.545 0.00 0.00 0.00 3.18
2933 3003 2.033049 CCGCCCGATCTATATCTAACGG 59.967 54.545 0.00 0.00 40.03 4.44
2934 3004 2.941064 CGCCCGATCTATATCTAACGGA 59.059 50.000 0.00 0.00 42.40 4.69
2935 3005 3.564644 CGCCCGATCTATATCTAACGGAT 59.435 47.826 0.00 0.00 42.40 4.18
2936 3006 4.753610 CGCCCGATCTATATCTAACGGATA 59.246 45.833 0.00 0.00 42.40 2.59
2937 3007 5.107026 CGCCCGATCTATATCTAACGGATAG 60.107 48.000 0.00 0.00 42.40 2.08
2938 3008 5.181622 GCCCGATCTATATCTAACGGATAGG 59.818 48.000 0.00 0.00 42.40 2.57
2939 3009 6.531923 CCCGATCTATATCTAACGGATAGGA 58.468 44.000 0.00 0.00 42.40 2.94
2940 3010 6.996879 CCCGATCTATATCTAACGGATAGGAA 59.003 42.308 0.00 0.00 42.40 3.36
2941 3011 7.173562 CCCGATCTATATCTAACGGATAGGAAG 59.826 44.444 0.00 0.00 42.40 3.46
2942 3012 7.932491 CCGATCTATATCTAACGGATAGGAAGA 59.068 40.741 0.00 0.00 42.40 2.87
2943 3013 9.327628 CGATCTATATCTAACGGATAGGAAGAA 57.672 37.037 0.00 0.00 39.89 2.52
2951 3021 8.529424 TCTAACGGATAGGAAGAAAACTATGA 57.471 34.615 0.00 0.00 30.43 2.15
2952 3022 8.411683 TCTAACGGATAGGAAGAAAACTATGAC 58.588 37.037 0.00 0.00 30.43 3.06
2953 3023 6.540438 ACGGATAGGAAGAAAACTATGACA 57.460 37.500 0.00 0.00 30.43 3.58
2954 3024 6.942976 ACGGATAGGAAGAAAACTATGACAA 58.057 36.000 0.00 0.00 30.43 3.18
2955 3025 7.565680 ACGGATAGGAAGAAAACTATGACAAT 58.434 34.615 0.00 0.00 30.43 2.71
2956 3026 8.047310 ACGGATAGGAAGAAAACTATGACAATT 58.953 33.333 0.00 0.00 30.43 2.32
2957 3027 9.542462 CGGATAGGAAGAAAACTATGACAATTA 57.458 33.333 0.00 0.00 30.43 1.40
2960 3030 7.939784 AGGAAGAAAACTATGACAATTACCC 57.060 36.000 0.00 0.00 0.00 3.69
2961 3031 6.598064 AGGAAGAAAACTATGACAATTACCCG 59.402 38.462 0.00 0.00 0.00 5.28
2962 3032 5.813080 AGAAAACTATGACAATTACCCGC 57.187 39.130 0.00 0.00 0.00 6.13
2963 3033 5.250200 AGAAAACTATGACAATTACCCGCA 58.750 37.500 0.00 0.00 0.00 5.69
2964 3034 4.957759 AAACTATGACAATTACCCGCAC 57.042 40.909 0.00 0.00 0.00 5.34
2965 3035 3.906720 ACTATGACAATTACCCGCACT 57.093 42.857 0.00 0.00 0.00 4.40
2966 3036 3.793559 ACTATGACAATTACCCGCACTC 58.206 45.455 0.00 0.00 0.00 3.51
2967 3037 2.038387 ATGACAATTACCCGCACTCC 57.962 50.000 0.00 0.00 0.00 3.85
2968 3038 0.981183 TGACAATTACCCGCACTCCT 59.019 50.000 0.00 0.00 0.00 3.69
2969 3039 1.066430 TGACAATTACCCGCACTCCTC 60.066 52.381 0.00 0.00 0.00 3.71
2970 3040 1.207329 GACAATTACCCGCACTCCTCT 59.793 52.381 0.00 0.00 0.00 3.69
2971 3041 1.207329 ACAATTACCCGCACTCCTCTC 59.793 52.381 0.00 0.00 0.00 3.20
2972 3042 0.831307 AATTACCCGCACTCCTCTCC 59.169 55.000 0.00 0.00 0.00 3.71
2973 3043 0.325296 ATTACCCGCACTCCTCTCCA 60.325 55.000 0.00 0.00 0.00 3.86
2974 3044 1.255667 TTACCCGCACTCCTCTCCAC 61.256 60.000 0.00 0.00 0.00 4.02
2975 3045 2.435120 TACCCGCACTCCTCTCCACA 62.435 60.000 0.00 0.00 0.00 4.17
2976 3046 2.362369 CCCGCACTCCTCTCCACAT 61.362 63.158 0.00 0.00 0.00 3.21
2977 3047 1.599047 CCGCACTCCTCTCCACATT 59.401 57.895 0.00 0.00 0.00 2.71
2978 3048 0.036010 CCGCACTCCTCTCCACATTT 60.036 55.000 0.00 0.00 0.00 2.32
2979 3049 1.207089 CCGCACTCCTCTCCACATTTA 59.793 52.381 0.00 0.00 0.00 1.40
2980 3050 2.271800 CGCACTCCTCTCCACATTTAC 58.728 52.381 0.00 0.00 0.00 2.01
2981 3051 2.353704 CGCACTCCTCTCCACATTTACA 60.354 50.000 0.00 0.00 0.00 2.41
2982 3052 3.674997 GCACTCCTCTCCACATTTACAA 58.325 45.455 0.00 0.00 0.00 2.41
2983 3053 4.072131 GCACTCCTCTCCACATTTACAAA 58.928 43.478 0.00 0.00 0.00 2.83
2984 3054 4.702131 GCACTCCTCTCCACATTTACAAAT 59.298 41.667 0.00 0.00 0.00 2.32
2985 3055 5.880332 GCACTCCTCTCCACATTTACAAATA 59.120 40.000 0.00 0.00 0.00 1.40
2986 3056 6.374333 GCACTCCTCTCCACATTTACAAATAA 59.626 38.462 0.00 0.00 0.00 1.40
2987 3057 7.414540 GCACTCCTCTCCACATTTACAAATAAG 60.415 40.741 0.00 0.00 0.00 1.73
2988 3058 7.066284 CACTCCTCTCCACATTTACAAATAAGG 59.934 40.741 0.00 0.00 0.00 2.69
2989 3059 5.885912 TCCTCTCCACATTTACAAATAAGGC 59.114 40.000 0.00 0.00 0.00 4.35
2990 3060 5.067805 CCTCTCCACATTTACAAATAAGGCC 59.932 44.000 0.00 0.00 0.00 5.19
2991 3061 5.826643 TCTCCACATTTACAAATAAGGCCT 58.173 37.500 0.00 0.00 0.00 5.19
2992 3062 6.252995 TCTCCACATTTACAAATAAGGCCTT 58.747 36.000 24.18 24.18 0.00 4.35
2993 3063 6.377146 TCTCCACATTTACAAATAAGGCCTTC 59.623 38.462 24.49 0.00 0.00 3.46
2994 3064 5.420739 TCCACATTTACAAATAAGGCCTTCC 59.579 40.000 24.49 0.00 0.00 3.46
2995 3065 5.395214 CCACATTTACAAATAAGGCCTTCCC 60.395 44.000 24.49 0.00 0.00 3.97
2997 3067 5.656859 ACATTTACAAATAAGGCCTTCCCTC 59.343 40.000 24.49 0.00 45.62 4.30
2998 3068 2.420058 ACAAATAAGGCCTTCCCTCG 57.580 50.000 24.49 10.68 45.62 4.63
2999 3069 1.633945 ACAAATAAGGCCTTCCCTCGT 59.366 47.619 24.49 11.37 45.62 4.18
3000 3070 2.041216 ACAAATAAGGCCTTCCCTCGTT 59.959 45.455 24.49 5.37 45.62 3.85
3001 3071 3.089284 CAAATAAGGCCTTCCCTCGTTT 58.911 45.455 24.49 11.47 45.62 3.60
3002 3072 4.263594 ACAAATAAGGCCTTCCCTCGTTTA 60.264 41.667 24.49 0.18 45.62 2.01
3003 3073 4.790718 AATAAGGCCTTCCCTCGTTTAT 57.209 40.909 24.49 3.14 45.62 1.40
3004 3074 2.711978 AAGGCCTTCCCTCGTTTATC 57.288 50.000 13.78 0.00 45.62 1.75
3005 3075 0.837940 AGGCCTTCCCTCGTTTATCC 59.162 55.000 0.00 0.00 41.21 2.59
3006 3076 0.837940 GGCCTTCCCTCGTTTATCCT 59.162 55.000 0.00 0.00 0.00 3.24
3007 3077 1.212195 GGCCTTCCCTCGTTTATCCTT 59.788 52.381 0.00 0.00 0.00 3.36
3008 3078 2.356844 GGCCTTCCCTCGTTTATCCTTT 60.357 50.000 0.00 0.00 0.00 3.11
3009 3079 3.353557 GCCTTCCCTCGTTTATCCTTTT 58.646 45.455 0.00 0.00 0.00 2.27
3010 3080 3.377485 GCCTTCCCTCGTTTATCCTTTTC 59.623 47.826 0.00 0.00 0.00 2.29
3011 3081 4.844884 CCTTCCCTCGTTTATCCTTTTCT 58.155 43.478 0.00 0.00 0.00 2.52
3012 3082 4.876679 CCTTCCCTCGTTTATCCTTTTCTC 59.123 45.833 0.00 0.00 0.00 2.87
3013 3083 4.482952 TCCCTCGTTTATCCTTTTCTCC 57.517 45.455 0.00 0.00 0.00 3.71
3014 3084 3.199289 TCCCTCGTTTATCCTTTTCTCCC 59.801 47.826 0.00 0.00 0.00 4.30
3015 3085 3.054655 CCCTCGTTTATCCTTTTCTCCCA 60.055 47.826 0.00 0.00 0.00 4.37
3016 3086 3.939592 CCTCGTTTATCCTTTTCTCCCAC 59.060 47.826 0.00 0.00 0.00 4.61
3017 3087 4.564821 CCTCGTTTATCCTTTTCTCCCACA 60.565 45.833 0.00 0.00 0.00 4.17
3018 3088 4.975631 TCGTTTATCCTTTTCTCCCACAA 58.024 39.130 0.00 0.00 0.00 3.33
3019 3089 5.001232 TCGTTTATCCTTTTCTCCCACAAG 58.999 41.667 0.00 0.00 0.00 3.16
3020 3090 5.001232 CGTTTATCCTTTTCTCCCACAAGA 58.999 41.667 0.00 0.00 0.00 3.02
3021 3091 5.648092 CGTTTATCCTTTTCTCCCACAAGAT 59.352 40.000 0.00 0.00 0.00 2.40
3022 3092 6.183360 CGTTTATCCTTTTCTCCCACAAGATC 60.183 42.308 0.00 0.00 0.00 2.75
3023 3093 6.642733 TTATCCTTTTCTCCCACAAGATCT 57.357 37.500 0.00 0.00 0.00 2.75
3024 3094 5.527026 ATCCTTTTCTCCCACAAGATCTT 57.473 39.130 0.88 0.88 0.00 2.40
3025 3095 4.655963 TCCTTTTCTCCCACAAGATCTTG 58.344 43.478 29.74 29.74 45.58 3.02
3026 3096 4.350816 TCCTTTTCTCCCACAAGATCTTGA 59.649 41.667 36.15 16.73 42.93 3.02
3027 3097 5.014544 TCCTTTTCTCCCACAAGATCTTGAT 59.985 40.000 36.15 20.22 42.93 2.57
3028 3098 5.125097 CCTTTTCTCCCACAAGATCTTGATG 59.875 44.000 36.15 27.70 42.93 3.07
3029 3099 4.916041 TTCTCCCACAAGATCTTGATGT 57.084 40.909 36.15 16.75 42.93 3.06
3030 3100 4.916041 TCTCCCACAAGATCTTGATGTT 57.084 40.909 36.15 15.47 42.93 2.71
3031 3101 4.836825 TCTCCCACAAGATCTTGATGTTC 58.163 43.478 36.15 0.00 42.93 3.18
3032 3102 3.944015 CTCCCACAAGATCTTGATGTTCC 59.056 47.826 36.15 0.00 42.93 3.62
3033 3103 2.679837 CCCACAAGATCTTGATGTTCCG 59.320 50.000 36.15 18.22 42.93 4.30
3034 3104 3.338249 CCACAAGATCTTGATGTTCCGT 58.662 45.455 36.15 13.01 42.93 4.69
3035 3105 3.125829 CCACAAGATCTTGATGTTCCGTG 59.874 47.826 36.15 22.22 42.93 4.94
3036 3106 2.744202 ACAAGATCTTGATGTTCCGTGC 59.256 45.455 36.15 0.00 42.93 5.34
3037 3107 2.743664 CAAGATCTTGATGTTCCGTGCA 59.256 45.455 28.13 0.00 42.93 4.57
3038 3108 3.057969 AGATCTTGATGTTCCGTGCAA 57.942 42.857 0.00 0.00 0.00 4.08
3039 3109 2.744202 AGATCTTGATGTTCCGTGCAAC 59.256 45.455 0.00 0.00 0.00 4.17
3040 3110 2.254546 TCTTGATGTTCCGTGCAACT 57.745 45.000 0.00 0.00 31.75 3.16
3041 3111 1.872952 TCTTGATGTTCCGTGCAACTG 59.127 47.619 0.00 0.00 31.75 3.16
3042 3112 0.310543 TTGATGTTCCGTGCAACTGC 59.689 50.000 0.00 0.00 42.50 4.40
3043 3113 0.534877 TGATGTTCCGTGCAACTGCT 60.535 50.000 2.95 0.00 42.66 4.24
3044 3114 1.270571 TGATGTTCCGTGCAACTGCTA 60.271 47.619 2.95 0.00 42.66 3.49
3045 3115 1.394917 GATGTTCCGTGCAACTGCTAG 59.605 52.381 2.95 0.00 42.66 3.42
3046 3116 0.105964 TGTTCCGTGCAACTGCTAGT 59.894 50.000 2.95 0.00 42.66 2.57
3047 3117 1.341852 TGTTCCGTGCAACTGCTAGTA 59.658 47.619 2.95 0.00 42.66 1.82
3084 3154 5.325494 CAGTTAACAAGTACACAAAACGCA 58.675 37.500 8.61 0.00 0.00 5.24
3090 3160 6.126568 ACAAGTACACAAAACGCACTTAAT 57.873 33.333 0.00 0.00 0.00 1.40
3182 3252 2.134789 ATCCACCAGGTTTGAGATGC 57.865 50.000 0.00 0.00 35.89 3.91
3187 3257 1.081892 CCAGGTTTGAGATGCTCACG 58.918 55.000 0.00 0.00 40.46 4.35
3237 3307 6.756299 AATTCAAAATTGTTTGCCACACTT 57.244 29.167 0.00 0.00 43.30 3.16
3275 3345 2.609350 CCAATTCAGAAACATTGCCCG 58.391 47.619 0.00 0.00 0.00 6.13
3320 3390 5.069383 GGGTCCTTTTCTAGCTACTTCTAGG 59.931 48.000 0.00 0.00 37.30 3.02
3443 3884 7.388437 ACCAAAAGTATTCGTGGTATTCACTA 58.612 34.615 0.00 0.00 42.59 2.74
3464 3905 7.981789 TCACTATATTCACTTCACTGACAATCC 59.018 37.037 0.00 0.00 0.00 3.01
3637 4078 4.391830 TGAACTGCCAAATCGTCTTACATC 59.608 41.667 0.00 0.00 0.00 3.06
3648 4089 5.048153 TCGTCTTACATCAGTGAACAGAG 57.952 43.478 0.00 0.00 0.00 3.35
3649 4090 4.760204 TCGTCTTACATCAGTGAACAGAGA 59.240 41.667 0.00 0.00 0.00 3.10
3650 4091 5.416013 TCGTCTTACATCAGTGAACAGAGAT 59.584 40.000 0.00 0.00 0.00 2.75
3651 4092 5.514559 CGTCTTACATCAGTGAACAGAGATG 59.485 44.000 0.00 11.95 42.61 2.90
3654 4095 4.199432 ACATCAGTGAACAGAGATGGTC 57.801 45.455 15.60 0.00 41.55 4.02
3673 4114 4.036262 TGGTCTAACATGCAACTCACAAAC 59.964 41.667 0.00 0.00 0.00 2.93
3704 4148 3.507622 AGCATAAGAACAGAGCCCAAAAC 59.492 43.478 0.00 0.00 0.00 2.43
3716 4160 2.492088 AGCCCAAAACTTTAGATTCGCC 59.508 45.455 0.00 0.00 0.00 5.54
3744 4188 6.536582 TGAGAGTTGAGAAGAAACAAGAGTTG 59.463 38.462 0.00 0.00 38.17 3.16
3793 4237 5.901552 TGAAGTTCTCCCAAATCAACAAAC 58.098 37.500 4.17 0.00 0.00 2.93
4175 4619 1.876156 GCTGACAAGCTGTAGTTTGCT 59.124 47.619 8.16 0.00 46.60 3.91
4192 4637 2.766313 TGCTGCTGTAAACGTCTTGAT 58.234 42.857 0.00 0.00 0.00 2.57
4332 4777 2.270434 AACCTGAAGGAGATGGCCTA 57.730 50.000 3.32 0.00 37.26 3.93
4360 4805 3.949754 CTCATGGGAGATGCAAAAGCTTA 59.050 43.478 0.00 0.00 44.26 3.09
4363 4808 4.724074 TGGGAGATGCAAAAGCTTAATG 57.276 40.909 0.00 3.36 0.00 1.90
4416 4861 6.118170 CCTTGTGTATTCTGGTGAATCTGAT 58.882 40.000 0.00 0.00 41.55 2.90
4632 5082 3.703556 TCCCAGCACAAGAAATTCAAACA 59.296 39.130 0.00 0.00 0.00 2.83
5140 5593 1.696336 TCTGCAAGAGCTCTCCTGTTT 59.304 47.619 18.55 0.00 38.67 2.83
5169 5622 3.010696 TCAGTACTCTCTGGTGTCTCCAT 59.989 47.826 0.00 0.00 46.12 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.591792 TTCGATCTATTTATCATATGCCAGAAG 57.408 33.333 0.00 0.00 0.00 2.85
369 380 2.060326 TCCGCGTACAACTTGAGAAG 57.940 50.000 4.92 0.00 0.00 2.85
564 585 0.248702 TCGTTTTCTGTTTTGGCCGC 60.249 50.000 0.00 0.00 0.00 6.53
742 769 5.488919 AGAGTGGTTGGAATGATTAGAGGAA 59.511 40.000 0.00 0.00 0.00 3.36
854 881 1.029947 AACCCTTAAGCCGCGGATTG 61.030 55.000 36.99 22.94 0.00 2.67
1467 1494 4.649705 TCCTCCCCAACCTCCGCA 62.650 66.667 0.00 0.00 0.00 5.69
1660 1687 3.157252 GGGCGGCTGAGATGGAGA 61.157 66.667 9.56 0.00 0.00 3.71
1784 1818 2.353011 CCGCCAAGAATCAGCAACAAAT 60.353 45.455 0.00 0.00 0.00 2.32
1829 1863 4.326548 GGACGAAATCTTGTGCTACTGTAC 59.673 45.833 0.00 0.00 0.00 2.90
1865 1899 2.969443 AGTCCAAGACGAAATTTGCG 57.031 45.000 0.00 1.90 37.67 4.85
1883 1917 2.886523 TGGATGCAGAAAAGGTCACAAG 59.113 45.455 0.00 0.00 0.00 3.16
1884 1918 2.942804 TGGATGCAGAAAAGGTCACAA 58.057 42.857 0.00 0.00 0.00 3.33
1903 1937 7.429636 AATCAAGCACCAAATCAAATTCTTG 57.570 32.000 0.00 0.00 0.00 3.02
1920 1954 2.095059 ACATCAAGACGGCAAATCAAGC 60.095 45.455 0.00 0.00 0.00 4.01
1925 1959 3.149196 AGAACACATCAAGACGGCAAAT 58.851 40.909 0.00 0.00 0.00 2.32
1926 1960 2.571212 AGAACACATCAAGACGGCAAA 58.429 42.857 0.00 0.00 0.00 3.68
1927 1961 2.254546 AGAACACATCAAGACGGCAA 57.745 45.000 0.00 0.00 0.00 4.52
1928 1962 2.143122 GAAGAACACATCAAGACGGCA 58.857 47.619 0.00 0.00 0.00 5.69
1929 1963 2.417719 AGAAGAACACATCAAGACGGC 58.582 47.619 0.00 0.00 0.00 5.68
1930 1964 6.811665 TGTATTAGAAGAACACATCAAGACGG 59.188 38.462 0.00 0.00 0.00 4.79
1931 1965 7.328493 TGTGTATTAGAAGAACACATCAAGACG 59.672 37.037 3.55 0.00 46.25 4.18
1932 1966 8.534333 TGTGTATTAGAAGAACACATCAAGAC 57.466 34.615 3.55 0.00 46.25 3.01
1950 1992 4.519540 AATTGCGCCTCTTTTGTGTATT 57.480 36.364 4.18 0.00 0.00 1.89
1963 2005 1.675720 AACATGCCCCTAATTGCGCC 61.676 55.000 4.18 0.00 0.00 6.53
1964 2006 0.528249 CAACATGCCCCTAATTGCGC 60.528 55.000 0.00 0.00 0.00 6.09
1969 2011 5.559148 TTTTTGTTCAACATGCCCCTAAT 57.441 34.783 0.00 0.00 0.00 1.73
2093 2138 6.763135 CAGCTCCTACATTCAGCAGTATAAAA 59.237 38.462 0.00 0.00 35.46 1.52
2415 2470 9.967451 TGATAGGAACCATGTAAAATTCAGTTA 57.033 29.630 0.00 0.00 0.00 2.24
2474 2532 3.057736 CGAGGACCGTAAGAAACTTGAGA 60.058 47.826 0.00 0.00 43.02 3.27
2820 2888 1.879380 CTGAAAACAGGCCGAACATCA 59.121 47.619 0.00 0.00 0.00 3.07
2852 2922 6.706270 CCAACTCTGCTTTTTGTAAGAGTAGA 59.294 38.462 4.72 0.00 46.64 2.59
2853 2923 6.483640 ACCAACTCTGCTTTTTGTAAGAGTAG 59.516 38.462 4.72 3.17 46.64 2.57
2854 2924 6.260050 CACCAACTCTGCTTTTTGTAAGAGTA 59.740 38.462 4.72 0.00 46.64 2.59
2856 2926 5.296780 TCACCAACTCTGCTTTTTGTAAGAG 59.703 40.000 0.00 0.00 41.59 2.85
2857 2927 5.189928 TCACCAACTCTGCTTTTTGTAAGA 58.810 37.500 0.00 0.00 0.00 2.10
2858 2928 5.499139 TCACCAACTCTGCTTTTTGTAAG 57.501 39.130 0.00 0.00 0.00 2.34
2859 2929 5.592282 TCATCACCAACTCTGCTTTTTGTAA 59.408 36.000 0.00 0.00 0.00 2.41
2860 2930 5.129634 TCATCACCAACTCTGCTTTTTGTA 58.870 37.500 0.00 0.00 0.00 2.41
2861 2931 3.953612 TCATCACCAACTCTGCTTTTTGT 59.046 39.130 0.00 0.00 0.00 2.83
2862 2932 4.572985 TCATCACCAACTCTGCTTTTTG 57.427 40.909 0.00 0.00 0.00 2.44
2863 2933 4.021719 CCATCATCACCAACTCTGCTTTTT 60.022 41.667 0.00 0.00 0.00 1.94
2864 2934 3.508793 CCATCATCACCAACTCTGCTTTT 59.491 43.478 0.00 0.00 0.00 2.27
2865 2935 3.087031 CCATCATCACCAACTCTGCTTT 58.913 45.455 0.00 0.00 0.00 3.51
2866 2936 2.040813 ACCATCATCACCAACTCTGCTT 59.959 45.455 0.00 0.00 0.00 3.91
2867 2937 1.632409 ACCATCATCACCAACTCTGCT 59.368 47.619 0.00 0.00 0.00 4.24
2868 2938 1.741706 CACCATCATCACCAACTCTGC 59.258 52.381 0.00 0.00 0.00 4.26
2869 2939 2.745821 CACACCATCATCACCAACTCTG 59.254 50.000 0.00 0.00 0.00 3.35
2870 2940 2.373169 ACACACCATCATCACCAACTCT 59.627 45.455 0.00 0.00 0.00 3.24
2871 2941 2.744202 GACACACCATCATCACCAACTC 59.256 50.000 0.00 0.00 0.00 3.01
2872 2942 2.373169 AGACACACCATCATCACCAACT 59.627 45.455 0.00 0.00 0.00 3.16
2873 2943 2.485426 CAGACACACCATCATCACCAAC 59.515 50.000 0.00 0.00 0.00 3.77
2874 2944 2.106338 ACAGACACACCATCATCACCAA 59.894 45.455 0.00 0.00 0.00 3.67
2875 2945 1.699083 ACAGACACACCATCATCACCA 59.301 47.619 0.00 0.00 0.00 4.17
2876 2946 2.289631 TGACAGACACACCATCATCACC 60.290 50.000 0.00 0.00 0.00 4.02
2877 2947 3.044235 TGACAGACACACCATCATCAC 57.956 47.619 0.00 0.00 0.00 3.06
2878 2948 3.369787 GGATGACAGACACACCATCATCA 60.370 47.826 13.00 0.00 44.89 3.07
2879 2949 3.118482 AGGATGACAGACACACCATCATC 60.118 47.826 0.00 4.33 43.20 2.92
2880 2950 2.842496 AGGATGACAGACACACCATCAT 59.158 45.455 0.00 0.00 37.67 2.45
2881 2951 2.027837 CAGGATGACAGACACACCATCA 60.028 50.000 0.00 0.00 39.69 3.07
2882 2952 2.625737 CAGGATGACAGACACACCATC 58.374 52.381 0.00 0.00 39.69 3.51
2883 2953 1.339438 GCAGGATGACAGACACACCAT 60.339 52.381 0.00 0.00 39.69 3.55
2884 2954 0.035317 GCAGGATGACAGACACACCA 59.965 55.000 0.00 0.00 39.69 4.17
2885 2955 0.035317 TGCAGGATGACAGACACACC 59.965 55.000 0.00 0.00 39.69 4.16
2886 2956 1.882912 TTGCAGGATGACAGACACAC 58.117 50.000 0.00 0.00 39.69 3.82
2887 2957 2.865119 ATTGCAGGATGACAGACACA 57.135 45.000 0.00 0.00 39.69 3.72
2888 2958 4.993584 CCTATATTGCAGGATGACAGACAC 59.006 45.833 0.00 0.00 39.69 3.67
2889 2959 4.503817 GCCTATATTGCAGGATGACAGACA 60.504 45.833 0.00 0.00 39.69 3.41
2890 2960 3.999663 GCCTATATTGCAGGATGACAGAC 59.000 47.826 0.00 0.00 39.69 3.51
2891 2961 3.008375 GGCCTATATTGCAGGATGACAGA 59.992 47.826 0.00 0.00 39.69 3.41
2892 2962 3.341823 GGCCTATATTGCAGGATGACAG 58.658 50.000 0.00 0.00 39.69 3.51
2893 2963 2.289631 CGGCCTATATTGCAGGATGACA 60.290 50.000 0.00 0.00 39.69 3.58
2894 2964 2.350522 CGGCCTATATTGCAGGATGAC 58.649 52.381 0.00 0.00 39.69 3.06
2895 2965 1.339055 GCGGCCTATATTGCAGGATGA 60.339 52.381 0.00 0.00 39.69 2.92
2896 2966 1.089920 GCGGCCTATATTGCAGGATG 58.910 55.000 0.00 0.00 34.91 3.51
2897 2967 0.035056 GGCGGCCTATATTGCAGGAT 60.035 55.000 12.87 0.00 34.91 3.24
2898 2968 1.374947 GGCGGCCTATATTGCAGGA 59.625 57.895 12.87 0.00 34.91 3.86
2899 2969 1.675641 GGGCGGCCTATATTGCAGG 60.676 63.158 22.87 0.00 36.16 4.85
2900 2970 2.034879 CGGGCGGCCTATATTGCAG 61.035 63.158 27.04 2.56 0.00 4.41
2901 2971 1.836999 ATCGGGCGGCCTATATTGCA 61.837 55.000 27.04 0.00 0.00 4.08
2902 2972 1.078426 ATCGGGCGGCCTATATTGC 60.078 57.895 27.04 0.00 0.00 3.56
2903 2973 0.537188 AGATCGGGCGGCCTATATTG 59.463 55.000 27.04 9.35 0.00 1.90
2904 2974 2.154567 TAGATCGGGCGGCCTATATT 57.845 50.000 27.04 14.31 0.00 1.28
2905 2975 2.383442 ATAGATCGGGCGGCCTATAT 57.617 50.000 27.04 20.17 0.00 0.86
2906 2976 3.074094 AGATATAGATCGGGCGGCCTATA 59.926 47.826 27.04 19.80 37.15 1.31
2907 2977 2.158445 AGATATAGATCGGGCGGCCTAT 60.158 50.000 27.04 21.33 37.15 2.57
2908 2978 1.214673 AGATATAGATCGGGCGGCCTA 59.785 52.381 27.04 16.72 37.15 3.93
2909 2979 0.033011 AGATATAGATCGGGCGGCCT 60.033 55.000 27.04 8.20 37.15 5.19
2910 2980 1.688772 TAGATATAGATCGGGCGGCC 58.311 55.000 20.04 20.04 37.15 6.13
2911 2981 2.541178 CGTTAGATATAGATCGGGCGGC 60.541 54.545 0.00 0.00 37.15 6.53
2912 2982 2.033049 CCGTTAGATATAGATCGGGCGG 59.967 54.545 12.42 12.42 37.64 6.13
2913 2983 2.941064 TCCGTTAGATATAGATCGGGCG 59.059 50.000 0.00 0.00 38.70 6.13
2914 2984 5.181622 CCTATCCGTTAGATATAGATCGGGC 59.818 48.000 0.00 0.00 36.84 6.13
2915 2985 6.531923 TCCTATCCGTTAGATATAGATCGGG 58.468 44.000 0.00 0.00 36.84 5.14
2916 2986 7.932491 TCTTCCTATCCGTTAGATATAGATCGG 59.068 40.741 0.00 0.00 36.84 4.18
2917 2987 8.890124 TCTTCCTATCCGTTAGATATAGATCG 57.110 38.462 0.00 0.00 36.84 3.69
2925 2995 9.144298 TCATAGTTTTCTTCCTATCCGTTAGAT 57.856 33.333 0.00 0.00 39.15 1.98
2926 2996 8.411683 GTCATAGTTTTCTTCCTATCCGTTAGA 58.588 37.037 0.00 0.00 0.00 2.10
2927 2997 8.195436 TGTCATAGTTTTCTTCCTATCCGTTAG 58.805 37.037 0.00 0.00 0.00 2.34
2928 2998 8.070034 TGTCATAGTTTTCTTCCTATCCGTTA 57.930 34.615 0.00 0.00 0.00 3.18
2929 2999 6.942976 TGTCATAGTTTTCTTCCTATCCGTT 58.057 36.000 0.00 0.00 0.00 4.44
2930 3000 6.540438 TGTCATAGTTTTCTTCCTATCCGT 57.460 37.500 0.00 0.00 0.00 4.69
2931 3001 8.438676 AATTGTCATAGTTTTCTTCCTATCCG 57.561 34.615 0.00 0.00 0.00 4.18
2934 3004 9.628500 GGGTAATTGTCATAGTTTTCTTCCTAT 57.372 33.333 0.00 0.00 0.00 2.57
2935 3005 7.767198 CGGGTAATTGTCATAGTTTTCTTCCTA 59.233 37.037 0.00 0.00 0.00 2.94
2936 3006 6.598064 CGGGTAATTGTCATAGTTTTCTTCCT 59.402 38.462 0.00 0.00 0.00 3.36
2937 3007 6.677187 GCGGGTAATTGTCATAGTTTTCTTCC 60.677 42.308 0.00 0.00 0.00 3.46
2938 3008 6.128117 TGCGGGTAATTGTCATAGTTTTCTTC 60.128 38.462 0.00 0.00 0.00 2.87
2939 3009 5.708230 TGCGGGTAATTGTCATAGTTTTCTT 59.292 36.000 0.00 0.00 0.00 2.52
2940 3010 5.123344 GTGCGGGTAATTGTCATAGTTTTCT 59.877 40.000 0.00 0.00 0.00 2.52
2941 3011 5.123344 AGTGCGGGTAATTGTCATAGTTTTC 59.877 40.000 0.00 0.00 0.00 2.29
2942 3012 5.007682 AGTGCGGGTAATTGTCATAGTTTT 58.992 37.500 0.00 0.00 0.00 2.43
2943 3013 4.585879 AGTGCGGGTAATTGTCATAGTTT 58.414 39.130 0.00 0.00 0.00 2.66
2944 3014 4.189231 GAGTGCGGGTAATTGTCATAGTT 58.811 43.478 0.00 0.00 0.00 2.24
2945 3015 3.431766 GGAGTGCGGGTAATTGTCATAGT 60.432 47.826 0.00 0.00 0.00 2.12
2946 3016 3.131396 GGAGTGCGGGTAATTGTCATAG 58.869 50.000 0.00 0.00 0.00 2.23
2947 3017 2.769663 AGGAGTGCGGGTAATTGTCATA 59.230 45.455 0.00 0.00 0.00 2.15
2948 3018 1.559682 AGGAGTGCGGGTAATTGTCAT 59.440 47.619 0.00 0.00 0.00 3.06
2949 3019 0.981183 AGGAGTGCGGGTAATTGTCA 59.019 50.000 0.00 0.00 0.00 3.58
2950 3020 1.207329 AGAGGAGTGCGGGTAATTGTC 59.793 52.381 0.00 0.00 0.00 3.18
2951 3021 1.207329 GAGAGGAGTGCGGGTAATTGT 59.793 52.381 0.00 0.00 0.00 2.71
2952 3022 1.473434 GGAGAGGAGTGCGGGTAATTG 60.473 57.143 0.00 0.00 0.00 2.32
2953 3023 0.831307 GGAGAGGAGTGCGGGTAATT 59.169 55.000 0.00 0.00 0.00 1.40
2954 3024 0.325296 TGGAGAGGAGTGCGGGTAAT 60.325 55.000 0.00 0.00 0.00 1.89
2955 3025 1.077805 TGGAGAGGAGTGCGGGTAA 59.922 57.895 0.00 0.00 0.00 2.85
2956 3026 1.681327 GTGGAGAGGAGTGCGGGTA 60.681 63.158 0.00 0.00 0.00 3.69
2957 3027 2.997897 GTGGAGAGGAGTGCGGGT 60.998 66.667 0.00 0.00 0.00 5.28
2958 3028 1.903877 AATGTGGAGAGGAGTGCGGG 61.904 60.000 0.00 0.00 0.00 6.13
2959 3029 0.036010 AAATGTGGAGAGGAGTGCGG 60.036 55.000 0.00 0.00 0.00 5.69
2960 3030 2.271800 GTAAATGTGGAGAGGAGTGCG 58.728 52.381 0.00 0.00 0.00 5.34
2961 3031 3.334583 TGTAAATGTGGAGAGGAGTGC 57.665 47.619 0.00 0.00 0.00 4.40
2962 3032 7.066284 CCTTATTTGTAAATGTGGAGAGGAGTG 59.934 40.741 0.27 0.00 0.00 3.51
2963 3033 7.112779 CCTTATTTGTAAATGTGGAGAGGAGT 58.887 38.462 0.27 0.00 0.00 3.85
2964 3034 6.038714 GCCTTATTTGTAAATGTGGAGAGGAG 59.961 42.308 11.79 0.00 0.00 3.69
2965 3035 5.885912 GCCTTATTTGTAAATGTGGAGAGGA 59.114 40.000 11.79 0.00 0.00 3.71
2966 3036 5.067805 GGCCTTATTTGTAAATGTGGAGAGG 59.932 44.000 0.00 0.00 0.00 3.69
2967 3037 5.888161 AGGCCTTATTTGTAAATGTGGAGAG 59.112 40.000 0.00 0.00 0.00 3.20
2968 3038 5.826643 AGGCCTTATTTGTAAATGTGGAGA 58.173 37.500 0.00 0.00 0.00 3.71
2969 3039 6.405842 GGAAGGCCTTATTTGTAAATGTGGAG 60.406 42.308 20.54 2.08 0.00 3.86
2970 3040 5.420739 GGAAGGCCTTATTTGTAAATGTGGA 59.579 40.000 20.54 0.00 0.00 4.02
2971 3041 5.395214 GGGAAGGCCTTATTTGTAAATGTGG 60.395 44.000 20.54 3.84 0.00 4.17
2972 3042 5.422012 AGGGAAGGCCTTATTTGTAAATGTG 59.578 40.000 20.54 0.00 0.00 3.21
2973 3043 5.589831 AGGGAAGGCCTTATTTGTAAATGT 58.410 37.500 20.54 0.00 0.00 2.71
2974 3044 5.221048 CGAGGGAAGGCCTTATTTGTAAATG 60.221 44.000 20.54 0.00 0.00 2.32
2975 3045 4.887655 CGAGGGAAGGCCTTATTTGTAAAT 59.112 41.667 20.54 0.00 0.00 1.40
2976 3046 4.263594 ACGAGGGAAGGCCTTATTTGTAAA 60.264 41.667 20.54 0.00 0.00 2.01
2977 3047 3.264964 ACGAGGGAAGGCCTTATTTGTAA 59.735 43.478 20.54 0.00 0.00 2.41
2978 3048 2.841881 ACGAGGGAAGGCCTTATTTGTA 59.158 45.455 20.54 0.00 0.00 2.41
2979 3049 1.633945 ACGAGGGAAGGCCTTATTTGT 59.366 47.619 20.54 13.59 0.00 2.83
2980 3050 2.420058 ACGAGGGAAGGCCTTATTTG 57.580 50.000 20.54 12.94 0.00 2.32
2981 3051 3.451402 AAACGAGGGAAGGCCTTATTT 57.549 42.857 20.54 6.38 0.00 1.40
2982 3052 4.445879 GGATAAACGAGGGAAGGCCTTATT 60.446 45.833 20.54 6.79 0.00 1.40
2983 3053 3.072622 GGATAAACGAGGGAAGGCCTTAT 59.927 47.826 20.54 7.60 0.00 1.73
2984 3054 2.436911 GGATAAACGAGGGAAGGCCTTA 59.563 50.000 20.54 0.00 0.00 2.69
2985 3055 1.212195 GGATAAACGAGGGAAGGCCTT 59.788 52.381 20.65 20.65 0.00 4.35
2986 3056 0.837940 GGATAAACGAGGGAAGGCCT 59.162 55.000 0.00 0.00 0.00 5.19
2987 3057 0.837940 AGGATAAACGAGGGAAGGCC 59.162 55.000 0.00 0.00 0.00 5.19
2988 3058 2.711978 AAGGATAAACGAGGGAAGGC 57.288 50.000 0.00 0.00 0.00 4.35
2989 3059 4.844884 AGAAAAGGATAAACGAGGGAAGG 58.155 43.478 0.00 0.00 0.00 3.46
2990 3060 4.876679 GGAGAAAAGGATAAACGAGGGAAG 59.123 45.833 0.00 0.00 0.00 3.46
2991 3061 4.324022 GGGAGAAAAGGATAAACGAGGGAA 60.324 45.833 0.00 0.00 0.00 3.97
2992 3062 3.199289 GGGAGAAAAGGATAAACGAGGGA 59.801 47.826 0.00 0.00 0.00 4.20
2993 3063 3.054655 TGGGAGAAAAGGATAAACGAGGG 60.055 47.826 0.00 0.00 0.00 4.30
2994 3064 3.939592 GTGGGAGAAAAGGATAAACGAGG 59.060 47.826 0.00 0.00 0.00 4.63
2995 3065 4.575885 TGTGGGAGAAAAGGATAAACGAG 58.424 43.478 0.00 0.00 0.00 4.18
2996 3066 4.627284 TGTGGGAGAAAAGGATAAACGA 57.373 40.909 0.00 0.00 0.00 3.85
2997 3067 5.001232 TCTTGTGGGAGAAAAGGATAAACG 58.999 41.667 0.00 0.00 0.00 3.60
2998 3068 6.887002 AGATCTTGTGGGAGAAAAGGATAAAC 59.113 38.462 0.00 0.00 0.00 2.01
2999 3069 7.032598 AGATCTTGTGGGAGAAAAGGATAAA 57.967 36.000 0.00 0.00 0.00 1.40
3000 3070 6.642733 AGATCTTGTGGGAGAAAAGGATAA 57.357 37.500 0.00 0.00 0.00 1.75
3001 3071 6.215431 TCAAGATCTTGTGGGAGAAAAGGATA 59.785 38.462 29.80 6.77 41.16 2.59
3002 3072 5.014544 TCAAGATCTTGTGGGAGAAAAGGAT 59.985 40.000 29.80 0.00 41.16 3.24
3003 3073 4.350816 TCAAGATCTTGTGGGAGAAAAGGA 59.649 41.667 29.80 7.78 41.16 3.36
3004 3074 4.655963 TCAAGATCTTGTGGGAGAAAAGG 58.344 43.478 29.80 4.99 41.16 3.11
3005 3075 5.709164 ACATCAAGATCTTGTGGGAGAAAAG 59.291 40.000 29.80 11.54 41.16 2.27
3006 3076 5.634118 ACATCAAGATCTTGTGGGAGAAAA 58.366 37.500 29.80 11.86 41.16 2.29
3007 3077 5.246981 ACATCAAGATCTTGTGGGAGAAA 57.753 39.130 29.80 12.52 41.16 2.52
3008 3078 4.916041 ACATCAAGATCTTGTGGGAGAA 57.084 40.909 29.80 13.20 41.16 2.87
3009 3079 4.323792 GGAACATCAAGATCTTGTGGGAGA 60.324 45.833 29.80 13.87 41.16 3.71
3010 3080 3.944015 GGAACATCAAGATCTTGTGGGAG 59.056 47.826 29.80 19.24 41.16 4.30
3011 3081 3.619733 CGGAACATCAAGATCTTGTGGGA 60.620 47.826 29.80 14.89 41.16 4.37
3012 3082 2.679837 CGGAACATCAAGATCTTGTGGG 59.320 50.000 29.80 22.43 41.16 4.61
3013 3083 3.125829 CACGGAACATCAAGATCTTGTGG 59.874 47.826 29.80 24.46 41.16 4.17
3014 3084 3.425359 GCACGGAACATCAAGATCTTGTG 60.425 47.826 29.80 26.67 41.16 3.33
3015 3085 2.744202 GCACGGAACATCAAGATCTTGT 59.256 45.455 29.80 17.26 41.16 3.16
3016 3086 2.743664 TGCACGGAACATCAAGATCTTG 59.256 45.455 26.56 26.56 41.71 3.02
3017 3087 3.057969 TGCACGGAACATCAAGATCTT 57.942 42.857 0.88 0.88 0.00 2.40
3018 3088 2.744202 GTTGCACGGAACATCAAGATCT 59.256 45.455 0.00 0.00 0.00 2.75
3019 3089 2.744202 AGTTGCACGGAACATCAAGATC 59.256 45.455 4.20 0.00 0.00 2.75
3020 3090 2.485426 CAGTTGCACGGAACATCAAGAT 59.515 45.455 4.20 0.00 0.00 2.40
3021 3091 1.872952 CAGTTGCACGGAACATCAAGA 59.127 47.619 4.20 0.00 0.00 3.02
3022 3092 1.664016 GCAGTTGCACGGAACATCAAG 60.664 52.381 4.20 0.00 41.59 3.02
3023 3093 0.310543 GCAGTTGCACGGAACATCAA 59.689 50.000 4.20 0.00 41.59 2.57
3024 3094 0.534877 AGCAGTTGCACGGAACATCA 60.535 50.000 6.90 0.00 45.16 3.07
3025 3095 1.394917 CTAGCAGTTGCACGGAACATC 59.605 52.381 6.90 0.00 45.16 3.06
3026 3096 1.270839 ACTAGCAGTTGCACGGAACAT 60.271 47.619 6.90 0.00 45.16 2.71
3027 3097 0.105964 ACTAGCAGTTGCACGGAACA 59.894 50.000 6.90 0.00 45.16 3.18
3028 3098 1.993370 CTACTAGCAGTTGCACGGAAC 59.007 52.381 6.90 0.00 45.16 3.62
3029 3099 1.616865 ACTACTAGCAGTTGCACGGAA 59.383 47.619 6.90 0.00 45.16 4.30
3030 3100 1.067846 CACTACTAGCAGTTGCACGGA 60.068 52.381 6.90 0.00 45.16 4.69
3031 3101 1.067846 TCACTACTAGCAGTTGCACGG 60.068 52.381 6.90 0.00 45.16 4.94
3032 3102 2.347697 TCACTACTAGCAGTTGCACG 57.652 50.000 6.90 0.00 45.16 5.34
3033 3103 6.910536 ATTATTCACTACTAGCAGTTGCAC 57.089 37.500 6.90 0.00 45.16 4.57
3034 3104 7.148255 CCAAATTATTCACTACTAGCAGTTGCA 60.148 37.037 6.90 0.00 45.16 4.08
3035 3105 7.189512 CCAAATTATTCACTACTAGCAGTTGC 58.810 38.462 0.00 0.00 42.49 4.17
3036 3106 7.148255 TGCCAAATTATTCACTACTAGCAGTTG 60.148 37.037 0.00 0.00 0.00 3.16
3037 3107 6.884295 TGCCAAATTATTCACTACTAGCAGTT 59.116 34.615 0.00 0.00 0.00 3.16
3038 3108 6.414732 TGCCAAATTATTCACTACTAGCAGT 58.585 36.000 0.00 0.00 0.00 4.40
3039 3109 6.540189 ACTGCCAAATTATTCACTACTAGCAG 59.460 38.462 0.00 0.00 46.20 4.24
3040 3110 6.414732 ACTGCCAAATTATTCACTACTAGCA 58.585 36.000 0.00 0.00 0.00 3.49
3041 3111 6.927294 ACTGCCAAATTATTCACTACTAGC 57.073 37.500 0.00 0.00 0.00 3.42
3043 3113 9.727859 TGTTAACTGCCAAATTATTCACTACTA 57.272 29.630 7.22 0.00 0.00 1.82
3044 3114 8.630054 TGTTAACTGCCAAATTATTCACTACT 57.370 30.769 7.22 0.00 0.00 2.57
3045 3115 9.341899 CTTGTTAACTGCCAAATTATTCACTAC 57.658 33.333 7.22 0.00 0.00 2.73
3046 3116 9.073475 ACTTGTTAACTGCCAAATTATTCACTA 57.927 29.630 7.22 0.00 0.00 2.74
3047 3117 7.951591 ACTTGTTAACTGCCAAATTATTCACT 58.048 30.769 7.22 0.00 0.00 3.41
3084 3154 8.665685 CAGGTTCAAAACTATCGCTTATTAAGT 58.334 33.333 5.38 0.00 0.00 2.24
3090 3160 7.681939 AATTCAGGTTCAAAACTATCGCTTA 57.318 32.000 0.00 0.00 0.00 3.09
3132 3202 6.969473 GCCTAAGATACTTTCAGCACAATTTC 59.031 38.462 0.00 0.00 0.00 2.17
3182 3252 0.036952 AACTGACATGCTCCCGTGAG 60.037 55.000 0.00 0.00 41.84 3.51
3187 3257 1.457346 CCTGAAACTGACATGCTCCC 58.543 55.000 0.00 0.00 0.00 4.30
3237 3307 1.572447 GCGCTGCCTGAAACGTTAA 59.428 52.632 0.00 0.00 0.00 2.01
3275 3345 6.407202 ACCCTAGTCAACAGATTAACATCAC 58.593 40.000 0.00 0.00 0.00 3.06
3443 3884 5.587844 GCTGGATTGTCAGTGAAGTGAATAT 59.412 40.000 0.00 0.00 37.12 1.28
3552 3993 2.625790 GTGGGCAGAGGTAGTAGATGAG 59.374 54.545 0.00 0.00 0.00 2.90
3637 4078 5.139435 TGTTAGACCATCTCTGTTCACTG 57.861 43.478 0.00 0.00 0.00 3.66
3648 4089 4.002982 TGTGAGTTGCATGTTAGACCATC 58.997 43.478 0.00 0.00 0.00 3.51
3649 4090 4.019792 TGTGAGTTGCATGTTAGACCAT 57.980 40.909 0.00 0.00 0.00 3.55
3650 4091 3.483808 TGTGAGTTGCATGTTAGACCA 57.516 42.857 0.00 0.00 0.00 4.02
3651 4092 4.036262 TGTTTGTGAGTTGCATGTTAGACC 59.964 41.667 0.00 0.00 0.00 3.85
3654 4095 6.696583 TGATTTGTTTGTGAGTTGCATGTTAG 59.303 34.615 0.00 0.00 0.00 2.34
3673 4114 6.309737 GGCTCTGTTCTTATGCTTTTGATTTG 59.690 38.462 0.00 0.00 0.00 2.32
3704 4148 6.507900 TCAACTCTCATAGGCGAATCTAAAG 58.492 40.000 0.00 0.00 0.00 1.85
3716 4160 8.087750 ACTCTTGTTTCTTCTCAACTCTCATAG 58.912 37.037 0.00 0.00 0.00 2.23
3749 4193 8.515414 ACTTCATCTTGCTGAAATAAGGTAAAC 58.485 33.333 0.00 0.00 34.86 2.01
3750 4194 8.635765 ACTTCATCTTGCTGAAATAAGGTAAA 57.364 30.769 0.00 0.00 34.86 2.01
3793 4237 5.398169 TCATGCTTAAATTTAGGCGTTGTG 58.602 37.500 20.81 17.31 38.44 3.33
4175 4619 4.814234 ACTTTGATCAAGACGTTTACAGCA 59.186 37.500 8.41 0.00 36.21 4.41
4275 4720 7.279615 TCAGAACCAGTCTACAAGAAAAATCA 58.720 34.615 0.00 0.00 33.56 2.57
4332 4777 3.675348 TGCATCTCCCATGAGGAAAAT 57.325 42.857 0.00 0.00 46.94 1.82
4360 4805 7.656948 CCCTTTTGATGTACAACAAATGTCATT 59.343 33.333 25.94 0.00 42.70 2.57
4363 4808 5.405269 GCCCTTTTGATGTACAACAAATGTC 59.595 40.000 25.94 18.37 42.70 3.06
4569 5019 7.550906 AGTTGCACTCCTAGAATTCAATAAGTC 59.449 37.037 8.44 2.24 0.00 3.01
5140 5593 3.440522 CACCAGAGAGTACTGACGAATCA 59.559 47.826 0.00 0.00 39.94 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.