Multiple sequence alignment - TraesCS2D01G285300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G285300 chr2D 100.000 4180 0 0 1 4180 361391854 361396033 0.000000e+00 7720.0
1 TraesCS2D01G285300 chr2D 88.122 362 25 4 1 344 606519862 606519501 8.360000e-112 414.0
2 TraesCS2D01G285300 chr2D 87.187 359 30 5 1 346 138692756 138693111 1.090000e-105 394.0
3 TraesCS2D01G285300 chr2D 82.553 235 36 4 1588 1820 7095246 7095477 7.090000e-48 202.0
4 TraesCS2D01G285300 chr2D 82.353 119 17 4 3875 3991 639966353 639966469 2.660000e-17 100.0
5 TraesCS2D01G285300 chr2B 91.593 1356 65 15 373 1691 430219234 430220577 0.000000e+00 1827.0
6 TraesCS2D01G285300 chr2B 91.352 821 44 9 2510 3321 430224630 430225432 0.000000e+00 1098.0
7 TraesCS2D01G285300 chr2B 92.833 586 23 5 1941 2513 430223959 430224538 0.000000e+00 832.0
8 TraesCS2D01G285300 chr2B 91.722 302 22 3 3510 3809 430227025 430227325 2.320000e-112 416.0
9 TraesCS2D01G285300 chr2B 89.222 167 6 4 3341 3499 430225416 430225578 9.170000e-47 198.0
10 TraesCS2D01G285300 chr2B 84.177 158 13 8 201 348 430750502 430750347 4.360000e-30 143.0
11 TraesCS2D01G285300 chr2B 91.860 86 5 1 4010 4095 430227432 430227515 7.340000e-23 119.0
12 TraesCS2D01G285300 chr2A 94.042 1091 32 11 375 1440 486469569 486470651 0.000000e+00 1624.0
13 TraesCS2D01G285300 chr2A 91.602 774 35 9 2560 3321 486472754 486473509 0.000000e+00 1042.0
14 TraesCS2D01G285300 chr2A 95.611 319 13 1 1951 2268 486470710 486471028 1.040000e-140 510.0
15 TraesCS2D01G285300 chr2A 87.052 363 29 5 1 345 653675593 653675231 1.090000e-105 394.0
16 TraesCS2D01G285300 chr2A 92.075 265 7 3 2261 2513 486472059 486472321 1.100000e-95 361.0
17 TraesCS2D01G285300 chr2A 90.789 228 17 2 3650 3876 486477196 486477420 6.790000e-78 302.0
18 TraesCS2D01G285300 chr2A 92.090 177 12 2 3479 3655 486473676 486473850 8.970000e-62 248.0
19 TraesCS2D01G285300 chr2A 90.798 163 4 2 3341 3492 486473493 486473655 1.520000e-49 207.0
20 TraesCS2D01G285300 chr2A 95.604 91 3 1 4091 4180 486492672 486492762 1.210000e-30 145.0
21 TraesCS2D01G285300 chr5D 88.920 361 22 8 1 343 403558681 403558321 2.990000e-116 429.0
22 TraesCS2D01G285300 chr5D 85.070 355 39 8 1 343 104143702 104143350 2.390000e-92 350.0
23 TraesCS2D01G285300 chr5D 84.890 364 30 17 1 346 464040136 464040492 1.110000e-90 344.0
24 TraesCS2D01G285300 chr5D 81.373 102 15 3 3879 3977 126251531 126251631 3.460000e-11 80.5
25 TraesCS2D01G285300 chr3A 88.493 365 20 9 1 346 168844198 168844559 5.000000e-114 422.0
26 TraesCS2D01G285300 chr3A 81.000 200 31 3 1598 1790 738218304 738218105 7.240000e-33 152.0
27 TraesCS2D01G285300 chr1D 88.122 362 21 9 1 343 400033713 400034071 1.080000e-110 411.0
28 TraesCS2D01G285300 chr3D 86.427 361 29 13 1 343 252338228 252337870 1.100000e-100 377.0
29 TraesCS2D01G285300 chr6A 84.831 356 34 16 1 343 446897479 446897827 1.440000e-89 340.0
30 TraesCS2D01G285300 chr4D 82.105 285 46 5 1536 1818 102002523 102002804 5.400000e-59 239.0
31 TraesCS2D01G285300 chr4D 83.406 229 32 2 1491 1719 100563508 100563730 1.520000e-49 207.0
32 TraesCS2D01G285300 chr4B 79.217 332 56 7 1491 1820 142915275 142915595 7.040000e-53 219.0
33 TraesCS2D01G285300 chr4B 81.897 116 18 3 3878 3991 638159314 638159428 1.240000e-15 95.3
34 TraesCS2D01G285300 chr5B 84.906 212 30 2 1610 1820 118626394 118626604 3.270000e-51 213.0
35 TraesCS2D01G285300 chr5B 79.412 102 19 2 3878 3977 636909961 636910062 2.080000e-08 71.3
36 TraesCS2D01G285300 chr5B 91.111 45 4 0 3916 3960 13440575 13440619 1.250000e-05 62.1
37 TraesCS2D01G285300 chr4A 81.659 229 33 5 1491 1719 475917770 475917551 9.230000e-42 182.0
38 TraesCS2D01G285300 chr7B 79.902 204 28 4 1618 1820 505470059 505470250 2.030000e-28 137.0
39 TraesCS2D01G285300 chr7B 78.986 138 23 4 1488 1620 731047742 731047878 5.760000e-14 89.8
40 TraesCS2D01G285300 chr1B 79.355 155 24 4 1492 1640 357227379 357227531 7.390000e-18 102.0
41 TraesCS2D01G285300 chr1B 81.188 101 16 3 3893 3991 279915500 279915599 1.250000e-10 78.7
42 TraesCS2D01G285300 chr1B 79.439 107 16 5 244 346 317571719 317571823 2.080000e-08 71.3
43 TraesCS2D01G285300 chr3B 78.431 153 21 7 201 343 602243748 602243598 5.760000e-14 89.8
44 TraesCS2D01G285300 chr7D 78.621 145 20 8 1512 1646 620129684 620129541 7.450000e-13 86.1
45 TraesCS2D01G285300 chr6D 83.696 92 11 4 3892 3981 34086246 34086335 2.680000e-12 84.2
46 TraesCS2D01G285300 chr1A 82.609 92 15 1 3901 3991 399486406 399486315 3.460000e-11 80.5
47 TraesCS2D01G285300 chr5A 80.392 102 16 4 3882 3980 622762873 622762773 1.610000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G285300 chr2D 361391854 361396033 4179 False 7720.000000 7720 100.000000 1 4180 1 chr2D.!!$F3 4179
1 TraesCS2D01G285300 chr2B 430219234 430227515 8281 False 748.333333 1827 91.430333 373 4095 6 chr2B.!!$F1 3722
2 TraesCS2D01G285300 chr2A 486469569 486477420 7851 False 613.428571 1624 92.429571 375 3876 7 chr2A.!!$F2 3501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.034863 TTTTACGGACAGGATGGGGC 60.035 55.0 0.00 0.0 43.62 5.80 F
335 336 0.036164 TTTGGGATCACGTGGTGGAG 59.964 55.0 17.00 0.0 33.87 3.86 F
345 346 0.250553 CGTGGTGGAGTTGGCCTAAA 60.251 55.0 3.32 0.0 0.00 1.85 F
1673 1730 0.615331 AGCGTGATTGGTGAGGTGAT 59.385 50.0 0.00 0.0 0.00 3.06 F
2681 7353 0.417437 TCCACATGGAGAGAGGGGAA 59.583 55.0 0.00 0.0 39.78 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1087 1115 0.323542 GACGACAAGGAGGAGGAGGA 60.324 60.0 0.00 0.00 0.00 3.71 R
1497 1548 0.578683 CAGCAATGCACGGAGTATCG 59.421 55.0 8.35 0.00 41.61 2.92 R
2192 5401 1.448985 GCCTTTCTGCCATCGTTACA 58.551 50.0 0.00 0.00 0.00 2.41 R
2924 7596 0.384230 GCATGCACACGTACACACAC 60.384 55.0 14.21 0.00 0.00 3.82 R
4150 13710 0.028770 TTGCTTGTTCCGCGAAACAG 59.971 50.0 11.62 7.13 40.08 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.820590 TTGGTTGAGCACGTGTGG 58.179 55.556 18.38 0.00 0.00 4.17
18 19 1.821759 TTGGTTGAGCACGTGTGGG 60.822 57.895 18.38 0.00 0.00 4.61
19 20 2.110213 GGTTGAGCACGTGTGGGA 59.890 61.111 18.38 0.00 0.00 4.37
20 21 1.302511 GGTTGAGCACGTGTGGGAT 60.303 57.895 18.38 0.00 0.00 3.85
21 22 1.298859 GGTTGAGCACGTGTGGGATC 61.299 60.000 18.38 8.42 0.00 3.36
22 23 0.602638 GTTGAGCACGTGTGGGATCA 60.603 55.000 18.38 10.83 0.00 2.92
23 24 0.602638 TTGAGCACGTGTGGGATCAC 60.603 55.000 18.38 0.00 43.87 3.06
33 34 2.877043 GTGGGATCACATTGGCAATC 57.123 50.000 10.36 0.00 43.13 2.67
34 35 2.101783 GTGGGATCACATTGGCAATCA 58.898 47.619 10.36 0.30 43.13 2.57
35 36 2.496871 GTGGGATCACATTGGCAATCAA 59.503 45.455 10.36 0.00 43.13 2.57
36 37 3.133362 GTGGGATCACATTGGCAATCAAT 59.867 43.478 10.36 4.04 46.24 2.57
37 38 4.341806 GTGGGATCACATTGGCAATCAATA 59.658 41.667 10.36 0.00 43.70 1.90
38 39 4.585581 TGGGATCACATTGGCAATCAATAG 59.414 41.667 10.36 1.08 43.70 1.73
39 40 4.828939 GGGATCACATTGGCAATCAATAGA 59.171 41.667 10.36 4.58 43.70 1.98
40 41 5.479375 GGGATCACATTGGCAATCAATAGAT 59.521 40.000 10.36 9.05 43.70 1.98
41 42 6.387465 GGATCACATTGGCAATCAATAGATG 58.613 40.000 10.36 0.33 43.70 2.90
42 43 6.015688 GGATCACATTGGCAATCAATAGATGT 60.016 38.462 10.36 1.03 43.70 3.06
43 44 7.175467 GGATCACATTGGCAATCAATAGATGTA 59.825 37.037 10.36 0.00 43.70 2.29
44 45 8.645814 ATCACATTGGCAATCAATAGATGTAT 57.354 30.769 10.36 0.00 43.70 2.29
45 46 8.467963 TCACATTGGCAATCAATAGATGTATT 57.532 30.769 10.36 0.00 43.70 1.89
46 47 8.354426 TCACATTGGCAATCAATAGATGTATTG 58.646 33.333 10.36 14.85 43.70 1.90
47 48 7.597369 CACATTGGCAATCAATAGATGTATTGG 59.403 37.037 19.37 7.60 43.70 3.16
48 49 7.288389 ACATTGGCAATCAATAGATGTATTGGT 59.712 33.333 19.37 11.93 43.70 3.67
49 50 7.658525 TTGGCAATCAATAGATGTATTGGTT 57.341 32.000 19.37 16.67 46.61 3.67
50 51 7.275888 TGGCAATCAATAGATGTATTGGTTC 57.724 36.000 16.11 11.63 43.65 3.62
51 52 6.832900 TGGCAATCAATAGATGTATTGGTTCA 59.167 34.615 16.11 10.70 43.65 3.18
52 53 7.506599 TGGCAATCAATAGATGTATTGGTTCAT 59.493 33.333 16.11 4.00 43.65 2.57
53 54 8.362639 GGCAATCAATAGATGTATTGGTTCATT 58.637 33.333 16.11 9.01 43.65 2.57
54 55 9.403110 GCAATCAATAGATGTATTGGTTCATTC 57.597 33.333 16.11 5.09 43.65 2.67
63 64 9.857656 AGATGTATTGGTTCATTCTATGTTCAT 57.142 29.630 0.00 0.00 0.00 2.57
66 67 9.460019 TGTATTGGTTCATTCTATGTTCATTCA 57.540 29.630 0.00 0.00 0.00 2.57
69 70 8.634335 TTGGTTCATTCTATGTTCATTCAAGA 57.366 30.769 0.00 0.00 0.00 3.02
70 71 8.044060 TGGTTCATTCTATGTTCATTCAAGAC 57.956 34.615 0.00 0.00 0.00 3.01
71 72 7.665145 TGGTTCATTCTATGTTCATTCAAGACA 59.335 33.333 0.00 0.00 0.00 3.41
72 73 8.514594 GGTTCATTCTATGTTCATTCAAGACAA 58.485 33.333 0.00 0.00 0.00 3.18
83 84 8.828644 TGTTCATTCAAGACAATTTTGATTTGG 58.171 29.630 0.00 0.00 34.76 3.28
84 85 8.829612 GTTCATTCAAGACAATTTTGATTTGGT 58.170 29.630 0.00 0.00 34.76 3.67
85 86 8.961294 TCATTCAAGACAATTTTGATTTGGTT 57.039 26.923 0.00 0.00 34.76 3.67
86 87 8.828644 TCATTCAAGACAATTTTGATTTGGTTG 58.171 29.630 0.00 3.96 34.76 3.77
87 88 8.614346 CATTCAAGACAATTTTGATTTGGTTGT 58.386 29.630 0.00 0.00 34.76 3.32
88 89 9.829507 ATTCAAGACAATTTTGATTTGGTTGTA 57.170 25.926 0.00 0.00 34.76 2.41
89 90 9.658799 TTCAAGACAATTTTGATTTGGTTGTAA 57.341 25.926 0.00 0.00 34.76 2.41
90 91 9.658799 TCAAGACAATTTTGATTTGGTTGTAAA 57.341 25.926 0.00 0.00 33.55 2.01
91 92 9.919348 CAAGACAATTTTGATTTGGTTGTAAAG 57.081 29.630 0.00 0.00 33.55 1.85
92 93 8.141835 AGACAATTTTGATTTGGTTGTAAAGC 57.858 30.769 0.00 0.00 46.39 3.51
93 94 7.986889 AGACAATTTTGATTTGGTTGTAAAGCT 59.013 29.630 0.00 0.00 46.34 3.74
94 95 9.255304 GACAATTTTGATTTGGTTGTAAAGCTA 57.745 29.630 0.00 0.00 46.34 3.32
95 96 9.777297 ACAATTTTGATTTGGTTGTAAAGCTAT 57.223 25.926 0.00 0.00 46.34 2.97
123 124 9.632807 TTATTAGAAACAATTTCGATTGGGTTG 57.367 29.630 3.94 0.25 44.29 3.77
124 125 5.529581 AGAAACAATTTCGATTGGGTTGT 57.470 34.783 3.94 0.80 44.29 3.32
125 126 6.642707 AGAAACAATTTCGATTGGGTTGTA 57.357 33.333 3.94 0.00 44.29 2.41
126 127 7.045126 AGAAACAATTTCGATTGGGTTGTAA 57.955 32.000 3.94 0.00 44.29 2.41
127 128 7.493367 AGAAACAATTTCGATTGGGTTGTAAA 58.507 30.769 3.94 0.00 44.29 2.01
128 129 8.147704 AGAAACAATTTCGATTGGGTTGTAAAT 58.852 29.630 3.94 0.00 44.29 1.40
129 130 8.669946 AAACAATTTCGATTGGGTTGTAAATT 57.330 26.923 3.94 0.00 35.93 1.82
130 131 8.669946 AACAATTTCGATTGGGTTGTAAATTT 57.330 26.923 3.94 0.00 35.93 1.82
131 132 8.669946 ACAATTTCGATTGGGTTGTAAATTTT 57.330 26.923 0.00 0.00 35.93 1.82
132 133 9.114952 ACAATTTCGATTGGGTTGTAAATTTTT 57.885 25.926 0.00 0.00 35.93 1.94
162 163 9.619316 TTTTCAGACAATTAATATTTGGACGTG 57.381 29.630 0.00 0.00 0.00 4.49
163 164 6.781138 TCAGACAATTAATATTTGGACGTGC 58.219 36.000 0.00 0.00 0.00 5.34
164 165 6.372937 TCAGACAATTAATATTTGGACGTGCA 59.627 34.615 5.33 5.33 0.00 4.57
165 166 7.026562 CAGACAATTAATATTTGGACGTGCAA 58.973 34.615 19.24 19.24 0.00 4.08
166 167 7.540400 CAGACAATTAATATTTGGACGTGCAAA 59.460 33.333 32.70 32.70 0.00 3.68
167 168 7.540745 AGACAATTAATATTTGGACGTGCAAAC 59.459 33.333 33.15 18.04 0.00 2.93
168 169 7.375053 ACAATTAATATTTGGACGTGCAAACT 58.625 30.769 33.15 23.69 0.00 2.66
169 170 8.516234 ACAATTAATATTTGGACGTGCAAACTA 58.484 29.630 33.15 24.77 0.00 2.24
170 171 9.009327 CAATTAATATTTGGACGTGCAAACTAG 57.991 33.333 33.15 15.40 0.00 2.57
171 172 7.675962 TTAATATTTGGACGTGCAAACTAGT 57.324 32.000 33.15 24.88 0.00 2.57
172 173 6.569179 AATATTTGGACGTGCAAACTAGTT 57.431 33.333 33.15 20.98 0.00 2.24
173 174 4.911514 ATTTGGACGTGCAAACTAGTTT 57.088 36.364 33.15 16.48 0.00 2.66
174 175 4.705337 TTTGGACGTGCAAACTAGTTTT 57.295 36.364 28.37 3.60 0.00 2.43
175 176 3.684103 TGGACGTGCAAACTAGTTTTG 57.316 42.857 18.25 14.09 46.57 2.44
176 177 3.271729 TGGACGTGCAAACTAGTTTTGA 58.728 40.909 18.25 5.12 46.76 2.69
177 178 3.880490 TGGACGTGCAAACTAGTTTTGAT 59.120 39.130 18.25 2.92 46.76 2.57
178 179 5.057819 TGGACGTGCAAACTAGTTTTGATA 58.942 37.500 18.25 2.72 46.76 2.15
179 180 5.703592 TGGACGTGCAAACTAGTTTTGATAT 59.296 36.000 18.25 4.66 46.76 1.63
180 181 6.874664 TGGACGTGCAAACTAGTTTTGATATA 59.125 34.615 18.25 0.00 46.76 0.86
181 182 7.388224 TGGACGTGCAAACTAGTTTTGATATAA 59.612 33.333 18.25 0.00 46.76 0.98
182 183 8.231837 GGACGTGCAAACTAGTTTTGATATAAA 58.768 33.333 18.25 0.00 46.76 1.40
183 184 9.601971 GACGTGCAAACTAGTTTTGATATAAAA 57.398 29.630 18.25 0.00 46.76 1.52
184 185 9.953697 ACGTGCAAACTAGTTTTGATATAAAAA 57.046 25.926 18.25 0.00 46.76 1.94
213 214 2.500392 TTTTTACGGACAGGATGGGG 57.500 50.000 0.00 0.00 43.62 4.96
214 215 0.034863 TTTTACGGACAGGATGGGGC 60.035 55.000 0.00 0.00 43.62 5.80
215 216 1.202099 TTTACGGACAGGATGGGGCA 61.202 55.000 0.00 0.00 43.62 5.36
216 217 1.202099 TTACGGACAGGATGGGGCAA 61.202 55.000 0.00 0.00 43.62 4.52
217 218 1.202099 TACGGACAGGATGGGGCAAA 61.202 55.000 0.00 0.00 43.62 3.68
218 219 2.046285 CGGACAGGATGGGGCAAAC 61.046 63.158 0.00 0.00 43.62 2.93
219 220 2.046285 GGACAGGATGGGGCAAACG 61.046 63.158 0.00 0.00 43.62 3.60
220 221 2.035626 ACAGGATGGGGCAAACGG 59.964 61.111 0.00 0.00 43.62 4.44
221 222 2.354729 CAGGATGGGGCAAACGGA 59.645 61.111 0.00 0.00 0.00 4.69
222 223 1.076777 CAGGATGGGGCAAACGGAT 60.077 57.895 0.00 0.00 0.00 4.18
223 224 1.076777 AGGATGGGGCAAACGGATG 60.077 57.895 0.00 0.00 0.00 3.51
224 225 2.785425 GGATGGGGCAAACGGATGC 61.785 63.158 6.17 6.17 45.67 3.91
263 264 3.716195 CCACCGCATCCCAGGACA 61.716 66.667 0.00 0.00 0.00 4.02
264 265 2.124983 CACCGCATCCCAGGACAG 60.125 66.667 0.00 0.00 0.00 3.51
265 266 3.402681 ACCGCATCCCAGGACAGG 61.403 66.667 0.00 0.00 0.00 4.00
266 267 4.864334 CCGCATCCCAGGACAGGC 62.864 72.222 0.00 0.00 0.00 4.85
267 268 4.864334 CGCATCCCAGGACAGGCC 62.864 72.222 0.00 0.00 0.00 5.19
268 269 4.512914 GCATCCCAGGACAGGCCC 62.513 72.222 0.00 0.00 37.37 5.80
269 270 4.181010 CATCCCAGGACAGGCCCG 62.181 72.222 0.00 0.00 37.37 6.13
274 275 4.394712 CAGGACAGGCCCGGACAC 62.395 72.222 0.73 0.00 37.37 3.67
277 278 3.771160 GACAGGCCCGGACACGAT 61.771 66.667 0.73 0.00 44.60 3.73
278 279 3.718210 GACAGGCCCGGACACGATC 62.718 68.421 0.73 0.00 44.60 3.69
279 280 4.530857 CAGGCCCGGACACGATCC 62.531 72.222 0.73 0.00 44.60 3.36
282 283 3.861797 GCCCGGACACGATCCCAT 61.862 66.667 0.73 0.00 46.04 4.00
283 284 2.421739 CCCGGACACGATCCCATC 59.578 66.667 0.73 0.00 46.04 3.51
284 285 2.431454 CCCGGACACGATCCCATCA 61.431 63.158 0.73 0.00 46.04 3.07
285 286 1.748403 CCGGACACGATCCCATCAT 59.252 57.895 0.00 0.00 46.04 2.45
286 287 0.319900 CCGGACACGATCCCATCATC 60.320 60.000 0.00 0.00 46.04 2.92
287 288 0.319900 CGGACACGATCCCATCATCC 60.320 60.000 5.12 0.00 46.04 3.51
288 289 1.051812 GGACACGATCCCATCATCCT 58.948 55.000 0.00 0.00 42.46 3.24
289 290 2.248248 GGACACGATCCCATCATCCTA 58.752 52.381 0.00 0.00 42.46 2.94
290 291 2.632996 GGACACGATCCCATCATCCTAA 59.367 50.000 0.00 0.00 42.46 2.69
291 292 3.555168 GGACACGATCCCATCATCCTAAC 60.555 52.174 0.00 0.00 42.46 2.34
292 293 3.038280 ACACGATCCCATCATCCTAACA 58.962 45.455 0.00 0.00 0.00 2.41
293 294 3.454447 ACACGATCCCATCATCCTAACAA 59.546 43.478 0.00 0.00 0.00 2.83
294 295 4.080582 ACACGATCCCATCATCCTAACAAA 60.081 41.667 0.00 0.00 0.00 2.83
295 296 4.881273 CACGATCCCATCATCCTAACAAAA 59.119 41.667 0.00 0.00 0.00 2.44
296 297 5.532406 CACGATCCCATCATCCTAACAAAAT 59.468 40.000 0.00 0.00 0.00 1.82
297 298 5.765182 ACGATCCCATCATCCTAACAAAATC 59.235 40.000 0.00 0.00 0.00 2.17
298 299 5.182001 CGATCCCATCATCCTAACAAAATCC 59.818 44.000 0.00 0.00 0.00 3.01
299 300 4.460263 TCCCATCATCCTAACAAAATCCG 58.540 43.478 0.00 0.00 0.00 4.18
300 301 3.569701 CCCATCATCCTAACAAAATCCGG 59.430 47.826 0.00 0.00 0.00 5.14
301 302 3.004734 CCATCATCCTAACAAAATCCGGC 59.995 47.826 0.00 0.00 0.00 6.13
302 303 3.644966 TCATCCTAACAAAATCCGGCT 57.355 42.857 0.00 0.00 0.00 5.52
303 304 4.764050 TCATCCTAACAAAATCCGGCTA 57.236 40.909 0.00 0.00 0.00 3.93
304 305 5.105567 TCATCCTAACAAAATCCGGCTAA 57.894 39.130 0.00 0.00 0.00 3.09
305 306 4.879545 TCATCCTAACAAAATCCGGCTAAC 59.120 41.667 0.00 0.00 0.00 2.34
306 307 3.613030 TCCTAACAAAATCCGGCTAACC 58.387 45.455 0.00 0.00 0.00 2.85
329 330 4.685447 TCCGTTTGGGATCACGTG 57.315 55.556 9.94 9.94 40.94 4.49
330 331 1.004320 TCCGTTTGGGATCACGTGG 60.004 57.895 17.00 0.00 40.94 4.94
331 332 1.302192 CCGTTTGGGATCACGTGGT 60.302 57.895 17.00 8.94 38.47 4.16
332 333 1.573829 CCGTTTGGGATCACGTGGTG 61.574 60.000 17.00 0.00 38.47 4.17
333 334 1.573829 CGTTTGGGATCACGTGGTGG 61.574 60.000 17.00 0.00 33.87 4.61
334 335 0.250553 GTTTGGGATCACGTGGTGGA 60.251 55.000 17.00 0.00 33.87 4.02
335 336 0.036164 TTTGGGATCACGTGGTGGAG 59.964 55.000 17.00 0.00 33.87 3.86
336 337 1.125093 TTGGGATCACGTGGTGGAGT 61.125 55.000 17.00 0.00 33.87 3.85
337 338 1.125093 TGGGATCACGTGGTGGAGTT 61.125 55.000 17.00 0.00 33.87 3.01
338 339 0.673644 GGGATCACGTGGTGGAGTTG 60.674 60.000 17.00 0.00 33.87 3.16
339 340 0.673644 GGATCACGTGGTGGAGTTGG 60.674 60.000 17.00 0.00 33.87 3.77
340 341 1.298859 GATCACGTGGTGGAGTTGGC 61.299 60.000 17.00 0.00 33.87 4.52
341 342 2.748058 ATCACGTGGTGGAGTTGGCC 62.748 60.000 17.00 0.00 33.87 5.36
342 343 3.168528 ACGTGGTGGAGTTGGCCT 61.169 61.111 3.32 0.00 0.00 5.19
343 344 1.839747 ACGTGGTGGAGTTGGCCTA 60.840 57.895 3.32 0.00 0.00 3.93
344 345 1.373435 CGTGGTGGAGTTGGCCTAA 59.627 57.895 3.32 0.00 0.00 2.69
345 346 0.250553 CGTGGTGGAGTTGGCCTAAA 60.251 55.000 3.32 0.00 0.00 1.85
346 347 1.816183 CGTGGTGGAGTTGGCCTAAAA 60.816 52.381 3.32 0.00 0.00 1.52
347 348 2.312390 GTGGTGGAGTTGGCCTAAAAA 58.688 47.619 3.32 0.00 0.00 1.94
348 349 2.296190 GTGGTGGAGTTGGCCTAAAAAG 59.704 50.000 3.32 0.00 0.00 2.27
349 350 1.893137 GGTGGAGTTGGCCTAAAAAGG 59.107 52.381 3.32 0.00 0.00 3.11
350 351 2.594131 GTGGAGTTGGCCTAAAAAGGT 58.406 47.619 3.32 0.00 0.00 3.50
351 352 3.499021 GGTGGAGTTGGCCTAAAAAGGTA 60.499 47.826 3.32 0.00 0.00 3.08
352 353 4.146564 GTGGAGTTGGCCTAAAAAGGTAA 58.853 43.478 3.32 0.00 0.00 2.85
353 354 4.585581 GTGGAGTTGGCCTAAAAAGGTAAA 59.414 41.667 3.32 0.00 0.00 2.01
354 355 4.830600 TGGAGTTGGCCTAAAAAGGTAAAG 59.169 41.667 3.32 0.00 0.00 1.85
355 356 5.074804 GGAGTTGGCCTAAAAAGGTAAAGA 58.925 41.667 3.32 0.00 0.00 2.52
356 357 5.537295 GGAGTTGGCCTAAAAAGGTAAAGAA 59.463 40.000 3.32 0.00 0.00 2.52
357 358 6.041182 GGAGTTGGCCTAAAAAGGTAAAGAAA 59.959 38.462 3.32 0.00 0.00 2.52
358 359 7.050970 AGTTGGCCTAAAAAGGTAAAGAAAG 57.949 36.000 3.32 0.00 0.00 2.62
359 360 6.041637 AGTTGGCCTAAAAAGGTAAAGAAAGG 59.958 38.462 3.32 0.00 0.00 3.11
360 361 4.836175 TGGCCTAAAAAGGTAAAGAAAGGG 59.164 41.667 3.32 0.00 0.00 3.95
361 362 5.081728 GGCCTAAAAAGGTAAAGAAAGGGA 58.918 41.667 0.00 0.00 0.00 4.20
362 363 5.047519 GGCCTAAAAAGGTAAAGAAAGGGAC 60.048 44.000 0.00 0.00 0.00 4.46
364 365 6.072064 GCCTAAAAAGGTAAAGAAAGGGACTC 60.072 42.308 0.00 0.00 38.49 3.36
365 366 6.148976 CCTAAAAAGGTAAAGAAAGGGACTCG 59.851 42.308 0.00 0.00 38.49 4.18
366 367 4.701651 AAAGGTAAAGAAAGGGACTCGT 57.298 40.909 0.00 0.00 38.49 4.18
367 368 3.957591 AGGTAAAGAAAGGGACTCGTC 57.042 47.619 0.00 0.00 38.49 4.20
497 498 2.156098 TCCGCTCGTGGCTTAATTTTT 58.844 42.857 0.00 0.00 39.13 1.94
670 679 6.073314 CCATCTCATTATTTCCTCCAACCAT 58.927 40.000 0.00 0.00 0.00 3.55
688 697 7.893302 TCCAACCATCTAGTAAATCAAATTGGT 59.107 33.333 0.00 0.00 36.55 3.67
880 896 3.172919 GCCAGCAGCTCTCGTTTC 58.827 61.111 0.00 0.00 38.99 2.78
1127 1167 1.134818 CATCCGAGGTCCGAATGTCAA 60.135 52.381 0.00 0.00 41.76 3.18
1162 1203 2.248248 TCCCTACCTCTTGTGTGTCTG 58.752 52.381 0.00 0.00 0.00 3.51
1163 1204 1.971357 CCCTACCTCTTGTGTGTCTGT 59.029 52.381 0.00 0.00 0.00 3.41
1422 1467 7.530010 TGCAGTTTCATTTGCTTATTACTCTC 58.470 34.615 0.00 0.00 40.87 3.20
1509 1560 4.542662 TTAACTAGACGATACTCCGTGC 57.457 45.455 0.00 0.00 43.49 5.34
1527 1578 2.053865 CATTGCTGCGGGGATTGGT 61.054 57.895 0.00 0.00 0.00 3.67
1530 1581 2.676471 GCTGCGGGGATTGGTTGT 60.676 61.111 0.00 0.00 0.00 3.32
1539 1590 5.047188 GCGGGGATTGGTTGTAATATTTTG 58.953 41.667 0.00 0.00 0.00 2.44
1588 1645 9.681062 AGGTATAATAACTTGTATGTGCTTGTT 57.319 29.630 0.00 0.00 0.00 2.83
1637 1694 6.544931 ACATAAGTAGCATTTCTCATGCATGT 59.455 34.615 25.43 6.98 46.77 3.21
1641 1698 7.024340 AGTAGCATTTCTCATGCATGTTAAG 57.976 36.000 25.43 16.00 46.77 1.85
1656 1713 9.868277 ATGCATGTTAAGAGAGATATAAGTAGC 57.132 33.333 0.00 0.00 0.00 3.58
1668 1725 6.682746 AGATATAAGTAGCGTGATTGGTGAG 58.317 40.000 0.00 0.00 0.00 3.51
1673 1730 0.615331 AGCGTGATTGGTGAGGTGAT 59.385 50.000 0.00 0.00 0.00 3.06
1676 1733 2.545526 GCGTGATTGGTGAGGTGATATG 59.454 50.000 0.00 0.00 0.00 1.78
1678 1735 3.557185 CGTGATTGGTGAGGTGATATGTG 59.443 47.826 0.00 0.00 0.00 3.21
1681 1738 3.348647 TTGGTGAGGTGATATGTGTGG 57.651 47.619 0.00 0.00 0.00 4.17
1687 2010 3.582647 TGAGGTGATATGTGTGGTGAGTT 59.417 43.478 0.00 0.00 0.00 3.01
1694 2017 5.425217 TGATATGTGTGGTGAGTTAGGATGT 59.575 40.000 0.00 0.00 0.00 3.06
1696 2019 2.703536 TGTGTGGTGAGTTAGGATGTGT 59.296 45.455 0.00 0.00 0.00 3.72
1697 2020 3.067106 GTGTGGTGAGTTAGGATGTGTG 58.933 50.000 0.00 0.00 0.00 3.82
1703 2026 3.753272 GTGAGTTAGGATGTGTGCATGTT 59.247 43.478 0.00 0.00 35.07 2.71
1711 2034 1.596603 TGTGTGCATGTTGAGTGAGG 58.403 50.000 0.00 0.00 0.00 3.86
1713 2036 2.224597 TGTGTGCATGTTGAGTGAGGAT 60.225 45.455 0.00 0.00 0.00 3.24
1721 2044 9.224267 GTGCATGTTGAGTGAGGATATAAATAT 57.776 33.333 0.00 0.00 0.00 1.28
1791 2307 8.499162 GGTGACATATATGCATGTTAAGAGAAC 58.501 37.037 10.16 0.00 39.25 3.01
1793 2309 9.264719 TGACATATATGCATGTTAAGAGAACTG 57.735 33.333 10.16 0.00 39.25 3.16
1797 2313 9.703892 ATATATGCATGTTAAGAGAACTGAGAC 57.296 33.333 10.16 0.00 0.00 3.36
1798 2314 5.213891 TGCATGTTAAGAGAACTGAGACA 57.786 39.130 0.00 0.00 0.00 3.41
1799 2315 5.233225 TGCATGTTAAGAGAACTGAGACAG 58.767 41.667 0.00 0.00 37.52 3.51
1804 2320 5.477291 TGTTAAGAGAACTGAGACAGTAGGG 59.523 44.000 4.84 0.00 44.62 3.53
1820 2336 7.288158 AGACAGTAGGGATCAACTATTTAGGTC 59.712 40.741 0.00 0.00 0.00 3.85
1821 2337 6.901300 ACAGTAGGGATCAACTATTTAGGTCA 59.099 38.462 0.00 0.00 0.00 4.02
1822 2338 7.147707 ACAGTAGGGATCAACTATTTAGGTCAC 60.148 40.741 0.00 0.00 0.00 3.67
1826 2360 8.568617 AGGGATCAACTATTTAGGTCACTTAT 57.431 34.615 0.00 0.00 0.00 1.73
1838 2372 7.843490 TTAGGTCACTTATAATTGCAGTGTC 57.157 36.000 11.24 7.40 39.24 3.67
1845 2379 9.409312 TCACTTATAATTGCAGTGTCAAAAATG 57.591 29.630 11.24 0.00 39.24 2.32
1851 2385 4.314740 TGCAGTGTCAAAAATGGGTAAC 57.685 40.909 0.00 0.00 0.00 2.50
1865 2399 9.945904 AAAAATGGGTAACTTTAAAACACTTCA 57.054 25.926 0.00 0.00 0.00 3.02
1866 2400 8.936070 AAATGGGTAACTTTAAAACACTTCAC 57.064 30.769 0.00 0.00 0.00 3.18
1867 2401 7.891498 ATGGGTAACTTTAAAACACTTCACT 57.109 32.000 0.00 0.00 0.00 3.41
1868 2402 7.090953 TGGGTAACTTTAAAACACTTCACTG 57.909 36.000 0.00 0.00 0.00 3.66
1869 2403 5.975344 GGGTAACTTTAAAACACTTCACTGC 59.025 40.000 0.00 0.00 0.00 4.40
1870 2404 6.404954 GGGTAACTTTAAAACACTTCACTGCA 60.405 38.462 0.00 0.00 0.00 4.41
1871 2405 6.691388 GGTAACTTTAAAACACTTCACTGCAG 59.309 38.462 13.48 13.48 0.00 4.41
1873 2407 6.699575 ACTTTAAAACACTTCACTGCAGAT 57.300 33.333 23.35 1.19 0.00 2.90
1880 2414 6.699575 AACACTTCACTGCAGATTTTAGTT 57.300 33.333 23.35 14.54 0.00 2.24
1881 2415 7.801716 AACACTTCACTGCAGATTTTAGTTA 57.198 32.000 23.35 0.00 0.00 2.24
1893 2427 6.430000 GCAGATTTTAGTTAGTTGAAGTGGGA 59.570 38.462 0.00 0.00 0.00 4.37
1897 2431 8.934023 ATTTTAGTTAGTTGAAGTGGGAATCA 57.066 30.769 0.00 0.00 0.00 2.57
1916 2450 5.712152 ATCAGATGGTTGTCTTGAAAACC 57.288 39.130 14.18 14.18 45.11 3.27
1939 5084 5.051774 CCACTTACATTTGACTGCAAAAACG 60.052 40.000 0.00 0.00 46.19 3.60
1941 5086 6.689241 CACTTACATTTGACTGCAAAAACGTA 59.311 34.615 0.00 0.00 46.19 3.57
1942 5087 6.910433 ACTTACATTTGACTGCAAAAACGTAG 59.090 34.615 0.00 0.00 46.19 3.51
2010 5219 7.446769 TGTCTGATGTACCTTAAAGCACTTAA 58.553 34.615 0.00 0.00 0.00 1.85
2036 5245 6.032094 CCGATGTCAGATTTCCAAAAATGAG 58.968 40.000 0.00 0.00 35.21 2.90
2355 6606 7.129622 CACTTGATAAAGTCGTTGCTTACAAA 58.870 34.615 0.00 0.00 37.58 2.83
2667 7339 3.819368 TGCTCTCTTTGAACATTCCACA 58.181 40.909 0.00 0.00 0.00 4.17
2677 7349 3.054875 TGAACATTCCACATGGAGAGAGG 60.055 47.826 0.00 0.00 46.36 3.69
2678 7350 1.842562 ACATTCCACATGGAGAGAGGG 59.157 52.381 0.00 0.00 46.36 4.30
2679 7351 1.142465 CATTCCACATGGAGAGAGGGG 59.858 57.143 0.00 0.00 46.36 4.79
2681 7353 0.417437 TCCACATGGAGAGAGGGGAA 59.583 55.000 0.00 0.00 39.78 3.97
2682 7354 0.835941 CCACATGGAGAGAGGGGAAG 59.164 60.000 0.00 0.00 37.39 3.46
2812 7484 1.133216 ACTGACGGTGACATCTCGATG 59.867 52.381 5.40 5.40 44.15 3.84
2819 7491 2.101415 GGTGACATCTCGATGGACATCA 59.899 50.000 12.33 3.46 42.91 3.07
2842 7514 0.459585 ACCGATTTGATGGACCGACG 60.460 55.000 0.00 0.00 0.00 5.12
2883 7555 2.096496 CGATTGATCTGCTCACCCAAAC 59.904 50.000 0.00 0.00 32.17 2.93
2921 7593 1.717645 GGTTCGATCGTGTGTGTGTAC 59.282 52.381 15.94 0.00 0.00 2.90
2924 7596 0.700764 CGATCGTGTGTGTGTACGTG 59.299 55.000 7.03 0.00 40.87 4.49
2925 7597 1.762419 GATCGTGTGTGTGTACGTGT 58.238 50.000 0.00 0.00 40.87 4.49
2926 7598 1.450533 GATCGTGTGTGTGTACGTGTG 59.549 52.381 0.00 0.00 40.87 3.82
2927 7599 0.170784 TCGTGTGTGTGTACGTGTGT 59.829 50.000 0.00 0.00 40.87 3.72
2928 7600 0.296349 CGTGTGTGTGTACGTGTGTG 59.704 55.000 0.00 0.00 35.70 3.82
2929 7601 1.352114 GTGTGTGTGTACGTGTGTGT 58.648 50.000 0.00 0.00 0.00 3.72
2930 7602 1.059979 GTGTGTGTGTACGTGTGTGTG 59.940 52.381 0.00 0.00 0.00 3.82
2931 7603 1.336980 TGTGTGTGTACGTGTGTGTGT 60.337 47.619 0.00 0.00 0.00 3.72
2932 7604 2.094854 TGTGTGTGTACGTGTGTGTGTA 60.095 45.455 0.00 0.00 0.00 2.90
2933 7605 2.279659 GTGTGTGTACGTGTGTGTGTAC 59.720 50.000 0.00 0.00 41.00 2.90
2934 7606 1.513994 GTGTGTACGTGTGTGTGTACG 59.486 52.381 0.00 0.00 42.99 3.67
2993 7665 4.595116 CTCAGAACAAGTCAAAAGCTGTG 58.405 43.478 0.00 0.00 0.00 3.66
2998 7673 5.414454 AGAACAAGTCAAAAGCTGTGTTACA 59.586 36.000 0.00 0.00 29.75 2.41
3002 7677 6.542370 ACAAGTCAAAAGCTGTGTTACATACT 59.458 34.615 0.00 0.00 0.00 2.12
3020 7695 5.652452 ACATACTACTCCAAATCTTTTGGGC 59.348 40.000 16.72 0.00 39.96 5.36
3232 7907 9.513906 TTGATGTTCATTTGGTACTCTTGATTA 57.486 29.630 0.00 0.00 0.00 1.75
3321 8005 8.624367 CTAGTGGTTGCACTAGTATAGATACT 57.376 38.462 2.53 7.34 45.74 2.12
3322 8006 7.899648 AGTGGTTGCACTAGTATAGATACTT 57.100 36.000 7.48 0.00 42.77 2.24
3323 8007 7.942990 AGTGGTTGCACTAGTATAGATACTTC 58.057 38.462 7.48 0.00 42.77 3.01
3324 8008 7.780745 AGTGGTTGCACTAGTATAGATACTTCT 59.219 37.037 7.48 0.00 42.77 2.85
3325 8009 8.414778 GTGGTTGCACTAGTATAGATACTTCTT 58.585 37.037 7.48 0.00 42.77 2.52
3326 8010 8.630917 TGGTTGCACTAGTATAGATACTTCTTC 58.369 37.037 7.48 0.00 42.77 2.87
3327 8011 8.852135 GGTTGCACTAGTATAGATACTTCTTCT 58.148 37.037 7.48 0.00 42.77 2.85
3352 8036 3.728076 TGCGGGAAAGCACTAGTATAG 57.272 47.619 0.00 0.00 42.92 1.31
3353 8037 3.293337 TGCGGGAAAGCACTAGTATAGA 58.707 45.455 0.00 0.00 41.14 1.98
3354 8038 3.895656 TGCGGGAAAGCACTAGTATAGAT 59.104 43.478 0.00 0.00 41.14 1.98
3355 8039 5.074804 TGCGGGAAAGCACTAGTATAGATA 58.925 41.667 0.00 0.00 41.14 1.98
3356 8040 5.048224 TGCGGGAAAGCACTAGTATAGATAC 60.048 44.000 0.00 0.00 41.14 2.24
3363 8047 5.759963 AGCACTAGTATAGATACGTGCAAC 58.240 41.667 23.15 5.97 45.13 4.17
3406 8090 2.742774 AGTTTGGTCAATGCGCTTTTC 58.257 42.857 9.73 4.27 0.00 2.29
3535 9706 2.568509 CCATTTCTTCAGGGGTTGCAAT 59.431 45.455 0.59 0.00 0.00 3.56
3572 9743 3.821600 TGAGCGATATCCTCTACTTGTCC 59.178 47.826 17.05 0.00 0.00 4.02
3614 9786 9.691362 GTTAAAGGAATTTCATTGCTCAAACTA 57.309 29.630 0.00 0.00 40.23 2.24
3660 13182 2.290960 GGGGTATATTAGCAAGGCCAGG 60.291 54.545 5.01 0.00 0.00 4.45
3676 13198 3.154710 GCCAGGTTTTAGCCAAACTACT 58.845 45.455 8.58 0.00 43.95 2.57
3688 13210 3.863041 CCAAACTACTGTCCTAGCTTCC 58.137 50.000 0.00 0.00 0.00 3.46
3730 13252 5.051891 ACTTGTGACTGATAGCATTTTGC 57.948 39.130 0.00 0.00 45.46 3.68
3791 13351 3.124297 CCAAGAAGCGACTTCACTTCATC 59.876 47.826 17.76 0.00 43.84 2.92
3794 13354 4.739195 AGAAGCGACTTCACTTCATCTAC 58.261 43.478 17.76 0.00 43.84 2.59
3825 13385 1.360551 CAGCGACCTATCCTCCACG 59.639 63.158 0.00 0.00 0.00 4.94
3878 13438 7.711339 CAGACCTCTACTTGTCTTTTGTTAACT 59.289 37.037 7.22 0.00 39.76 2.24
3879 13439 8.921205 AGACCTCTACTTGTCTTTTGTTAACTA 58.079 33.333 7.22 0.00 38.67 2.24
3880 13440 9.708092 GACCTCTACTTGTCTTTTGTTAACTAT 57.292 33.333 7.22 0.00 0.00 2.12
3884 13444 9.498176 TCTACTTGTCTTTTGTTAACTATTCCC 57.502 33.333 7.22 0.00 0.00 3.97
3885 13445 9.503399 CTACTTGTCTTTTGTTAACTATTCCCT 57.497 33.333 7.22 0.00 0.00 4.20
3886 13446 8.392372 ACTTGTCTTTTGTTAACTATTCCCTC 57.608 34.615 7.22 0.00 0.00 4.30
3887 13447 7.447545 ACTTGTCTTTTGTTAACTATTCCCTCC 59.552 37.037 7.22 0.00 0.00 4.30
3888 13448 5.935789 TGTCTTTTGTTAACTATTCCCTCCG 59.064 40.000 7.22 0.00 0.00 4.63
3889 13449 5.936372 GTCTTTTGTTAACTATTCCCTCCGT 59.064 40.000 7.22 0.00 0.00 4.69
3890 13450 7.099120 GTCTTTTGTTAACTATTCCCTCCGTA 58.901 38.462 7.22 0.00 0.00 4.02
3891 13451 7.063898 GTCTTTTGTTAACTATTCCCTCCGTAC 59.936 40.741 7.22 0.00 0.00 3.67
3892 13452 5.343307 TTGTTAACTATTCCCTCCGTACC 57.657 43.478 7.22 0.00 0.00 3.34
3893 13453 4.613437 TGTTAACTATTCCCTCCGTACCT 58.387 43.478 7.22 0.00 0.00 3.08
3894 13454 5.765510 TGTTAACTATTCCCTCCGTACCTA 58.234 41.667 7.22 0.00 0.00 3.08
3895 13455 6.194235 TGTTAACTATTCCCTCCGTACCTAA 58.806 40.000 7.22 0.00 0.00 2.69
3896 13456 6.667414 TGTTAACTATTCCCTCCGTACCTAAA 59.333 38.462 7.22 0.00 0.00 1.85
3897 13457 7.345392 TGTTAACTATTCCCTCCGTACCTAAAT 59.655 37.037 7.22 0.00 0.00 1.40
3898 13458 8.860088 GTTAACTATTCCCTCCGTACCTAAATA 58.140 37.037 0.00 0.00 0.00 1.40
3899 13459 6.907853 ACTATTCCCTCCGTACCTAAATAC 57.092 41.667 0.00 0.00 0.00 1.89
3900 13460 6.376248 ACTATTCCCTCCGTACCTAAATACA 58.624 40.000 0.00 0.00 0.00 2.29
3901 13461 6.840705 ACTATTCCCTCCGTACCTAAATACAA 59.159 38.462 0.00 0.00 0.00 2.41
3902 13462 5.603170 TTCCCTCCGTACCTAAATACAAG 57.397 43.478 0.00 0.00 0.00 3.16
3903 13463 4.613437 TCCCTCCGTACCTAAATACAAGT 58.387 43.478 0.00 0.00 0.00 3.16
3904 13464 4.646492 TCCCTCCGTACCTAAATACAAGTC 59.354 45.833 0.00 0.00 0.00 3.01
3905 13465 4.403432 CCCTCCGTACCTAAATACAAGTCA 59.597 45.833 0.00 0.00 0.00 3.41
3906 13466 5.070047 CCCTCCGTACCTAAATACAAGTCAT 59.930 44.000 0.00 0.00 0.00 3.06
3907 13467 6.407752 CCCTCCGTACCTAAATACAAGTCATT 60.408 42.308 0.00 0.00 0.00 2.57
3908 13468 7.046033 CCTCCGTACCTAAATACAAGTCATTT 58.954 38.462 0.00 0.00 0.00 2.32
3909 13469 7.551617 CCTCCGTACCTAAATACAAGTCATTTT 59.448 37.037 0.00 0.00 0.00 1.82
3910 13470 9.590451 CTCCGTACCTAAATACAAGTCATTTTA 57.410 33.333 0.00 0.00 0.00 1.52
3911 13471 9.941325 TCCGTACCTAAATACAAGTCATTTTAA 57.059 29.630 0.00 0.00 0.00 1.52
3993 13553 9.434420 AGCTTATATAGATTCGTACGTAGTTCT 57.566 33.333 16.05 14.37 37.78 3.01
3998 13558 9.935241 ATATAGATTCGTACGTAGTTCTTAGGA 57.065 33.333 16.05 0.00 37.78 2.94
3999 13559 6.992063 AGATTCGTACGTAGTTCTTAGGAA 57.008 37.500 16.05 0.00 37.78 3.36
4008 13568 2.963548 GTTCTTAGGAACGGAGGGAG 57.036 55.000 1.56 0.00 41.70 4.30
4031 13591 1.494824 AAAGAACGAACGAACGAGGG 58.505 50.000 11.97 0.00 37.03 4.30
4032 13592 0.319297 AAGAACGAACGAACGAGGGG 60.319 55.000 11.97 0.00 37.03 4.79
4033 13593 1.006922 GAACGAACGAACGAGGGGT 60.007 57.895 11.97 0.00 37.03 4.95
4034 13594 1.280206 GAACGAACGAACGAGGGGTG 61.280 60.000 11.97 0.00 37.03 4.61
4064 13624 3.120321 TCATATATTGCCCGGTGACAC 57.880 47.619 0.00 0.00 0.00 3.67
4073 13633 3.337889 CGGTGACACGGTGTGCTG 61.338 66.667 20.06 12.09 36.98 4.41
4082 13642 2.111878 GGTGTGCTGGTCTGTGCT 59.888 61.111 0.00 0.00 0.00 4.40
4095 13655 4.021368 TGGTCTGTGCTTTAACTAGAGTCC 60.021 45.833 0.00 0.00 0.00 3.85
4096 13656 4.221041 GGTCTGTGCTTTAACTAGAGTCCT 59.779 45.833 0.00 0.00 0.00 3.85
4097 13657 5.418209 GGTCTGTGCTTTAACTAGAGTCCTA 59.582 44.000 0.00 0.00 0.00 2.94
4098 13658 6.404954 GGTCTGTGCTTTAACTAGAGTCCTAG 60.405 46.154 0.00 0.00 46.10 3.02
4099 13659 6.374894 GTCTGTGCTTTAACTAGAGTCCTAGA 59.625 42.308 0.00 0.00 44.00 2.43
4100 13660 6.600032 TCTGTGCTTTAACTAGAGTCCTAGAG 59.400 42.308 0.00 0.00 44.00 2.43
4101 13661 6.246919 TGTGCTTTAACTAGAGTCCTAGAGT 58.753 40.000 0.00 0.00 44.00 3.24
4102 13662 6.374894 TGTGCTTTAACTAGAGTCCTAGAGTC 59.625 42.308 0.00 0.00 44.00 3.36
4103 13663 6.600427 GTGCTTTAACTAGAGTCCTAGAGTCT 59.400 42.308 7.11 7.11 44.00 3.24
4104 13664 6.600032 TGCTTTAACTAGAGTCCTAGAGTCTG 59.400 42.308 11.39 5.22 44.00 3.51
4105 13665 6.824704 GCTTTAACTAGAGTCCTAGAGTCTGA 59.175 42.308 11.39 0.00 44.00 3.27
4106 13666 7.012044 GCTTTAACTAGAGTCCTAGAGTCTGAG 59.988 44.444 11.39 7.80 44.00 3.35
4107 13667 5.367945 AACTAGAGTCCTAGAGTCTGAGG 57.632 47.826 11.39 6.15 44.00 3.86
4108 13668 4.368067 ACTAGAGTCCTAGAGTCTGAGGT 58.632 47.826 11.39 5.76 44.00 3.85
4109 13669 3.644966 AGAGTCCTAGAGTCTGAGGTG 57.355 52.381 1.86 0.00 40.39 4.00
4110 13670 2.021457 GAGTCCTAGAGTCTGAGGTGC 58.979 57.143 1.86 4.50 34.20 5.01
4111 13671 1.107945 GTCCTAGAGTCTGAGGTGCC 58.892 60.000 1.86 0.00 34.20 5.01
4112 13672 1.003646 TCCTAGAGTCTGAGGTGCCT 58.996 55.000 1.86 0.00 34.20 4.75
4113 13673 2.092321 GTCCTAGAGTCTGAGGTGCCTA 60.092 54.545 1.86 0.00 34.20 3.93
4114 13674 2.581246 TCCTAGAGTCTGAGGTGCCTAA 59.419 50.000 1.86 0.00 34.20 2.69
4115 13675 3.011369 TCCTAGAGTCTGAGGTGCCTAAA 59.989 47.826 1.86 0.00 34.20 1.85
4116 13676 3.131400 CCTAGAGTCTGAGGTGCCTAAAC 59.869 52.174 1.86 0.00 0.00 2.01
4117 13677 2.609747 AGAGTCTGAGGTGCCTAAACA 58.390 47.619 0.00 0.00 0.00 2.83
4118 13678 2.972713 AGAGTCTGAGGTGCCTAAACAA 59.027 45.455 0.00 0.00 0.00 2.83
4119 13679 3.007398 AGAGTCTGAGGTGCCTAAACAAG 59.993 47.826 0.00 0.00 0.00 3.16
4120 13680 1.807142 GTCTGAGGTGCCTAAACAAGC 59.193 52.381 0.00 0.00 0.00 4.01
4121 13681 1.419762 TCTGAGGTGCCTAAACAAGCA 59.580 47.619 0.00 0.00 36.44 3.91
4122 13682 2.158682 TCTGAGGTGCCTAAACAAGCAA 60.159 45.455 0.00 0.00 41.48 3.91
4123 13683 2.622942 CTGAGGTGCCTAAACAAGCAAA 59.377 45.455 0.00 0.00 41.48 3.68
4124 13684 2.360801 TGAGGTGCCTAAACAAGCAAAC 59.639 45.455 0.00 0.00 41.48 2.93
4125 13685 1.336755 AGGTGCCTAAACAAGCAAACG 59.663 47.619 0.00 0.00 41.48 3.60
4126 13686 1.128513 GTGCCTAAACAAGCAAACGC 58.871 50.000 0.00 0.00 41.48 4.84
4127 13687 0.317436 TGCCTAAACAAGCAAACGCG 60.317 50.000 3.53 3.53 35.69 6.01
4128 13688 1.001745 GCCTAAACAAGCAAACGCGG 61.002 55.000 12.47 0.00 0.00 6.46
4129 13689 1.001745 CCTAAACAAGCAAACGCGGC 61.002 55.000 12.47 3.95 0.00 6.53
4130 13690 0.040425 CTAAACAAGCAAACGCGGCT 60.040 50.000 12.47 6.83 45.15 5.52
4131 13691 0.317436 TAAACAAGCAAACGCGGCTG 60.317 50.000 12.47 8.34 41.66 4.85
4132 13692 2.952291 AAACAAGCAAACGCGGCTGG 62.952 55.000 12.47 10.09 41.66 4.85
4144 13704 2.361610 GGCTGGCCTGCAAAGCTA 60.362 61.111 32.41 1.60 37.12 3.32
4145 13705 2.704808 GGCTGGCCTGCAAAGCTAC 61.705 63.158 32.41 12.34 37.12 3.58
4146 13706 2.704808 GCTGGCCTGCAAAGCTACC 61.705 63.158 27.96 0.00 34.05 3.18
4147 13707 1.303561 CTGGCCTGCAAAGCTACCA 60.304 57.895 3.32 0.00 0.00 3.25
4148 13708 0.682209 CTGGCCTGCAAAGCTACCAT 60.682 55.000 3.32 0.00 0.00 3.55
4149 13709 0.966875 TGGCCTGCAAAGCTACCATG 60.967 55.000 3.32 0.00 0.00 3.66
4150 13710 1.140375 GCCTGCAAAGCTACCATGC 59.860 57.895 1.17 6.73 40.45 4.06
4151 13711 1.318158 GCCTGCAAAGCTACCATGCT 61.318 55.000 12.88 0.00 46.40 3.79
4152 13712 0.454600 CCTGCAAAGCTACCATGCTG 59.545 55.000 12.88 12.02 43.24 4.41
4153 13713 1.171308 CTGCAAAGCTACCATGCTGT 58.829 50.000 12.88 0.00 43.24 4.40
4154 13714 1.542915 CTGCAAAGCTACCATGCTGTT 59.457 47.619 12.88 0.00 43.24 3.16
4155 13715 1.962807 TGCAAAGCTACCATGCTGTTT 59.037 42.857 12.88 0.00 43.24 2.83
4156 13716 2.030007 TGCAAAGCTACCATGCTGTTTC 60.030 45.455 12.88 0.00 43.24 2.78
4157 13717 2.855180 CAAAGCTACCATGCTGTTTCG 58.145 47.619 0.00 0.00 43.24 3.46
4158 13718 0.804989 AAGCTACCATGCTGTTTCGC 59.195 50.000 0.00 0.00 43.24 4.70
4159 13719 1.060937 GCTACCATGCTGTTTCGCG 59.939 57.895 0.00 0.00 0.00 5.87
4160 13720 1.715585 CTACCATGCTGTTTCGCGG 59.284 57.895 6.13 0.00 0.00 6.46
4161 13721 0.739462 CTACCATGCTGTTTCGCGGA 60.739 55.000 6.13 0.00 0.00 5.54
4162 13722 0.320858 TACCATGCTGTTTCGCGGAA 60.321 50.000 6.13 0.00 0.00 4.30
4163 13723 1.154225 CCATGCTGTTTCGCGGAAC 60.154 57.895 23.52 23.52 0.00 3.62
4164 13724 1.573932 CATGCTGTTTCGCGGAACA 59.426 52.632 29.97 29.97 37.87 3.18
4165 13725 0.040514 CATGCTGTTTCGCGGAACAA 60.041 50.000 31.22 19.64 38.90 2.83
4166 13726 0.238289 ATGCTGTTTCGCGGAACAAG 59.762 50.000 31.22 24.44 38.90 3.16
4167 13727 1.725973 GCTGTTTCGCGGAACAAGC 60.726 57.895 31.22 28.85 38.90 4.01
4168 13728 1.646540 CTGTTTCGCGGAACAAGCA 59.353 52.632 31.22 13.71 38.90 3.91
4169 13729 0.028770 CTGTTTCGCGGAACAAGCAA 59.971 50.000 31.22 10.57 38.90 3.91
4170 13730 0.452184 TGTTTCGCGGAACAAGCAAA 59.548 45.000 30.03 6.03 36.64 3.68
4171 13731 1.066303 TGTTTCGCGGAACAAGCAAAT 59.934 42.857 30.03 0.00 36.64 2.32
4172 13732 2.290916 TGTTTCGCGGAACAAGCAAATA 59.709 40.909 30.03 4.41 36.64 1.40
4173 13733 3.243101 TGTTTCGCGGAACAAGCAAATAA 60.243 39.130 30.03 3.61 36.64 1.40
4174 13734 2.892373 TCGCGGAACAAGCAAATAAG 57.108 45.000 6.13 0.00 34.19 1.73
4175 13735 1.135803 TCGCGGAACAAGCAAATAAGC 60.136 47.619 6.13 0.00 34.19 3.09
4176 13736 1.259316 GCGGAACAAGCAAATAAGCG 58.741 50.000 0.00 0.00 40.15 4.68
4177 13737 1.259316 CGGAACAAGCAAATAAGCGC 58.741 50.000 0.00 0.00 40.15 5.92
4178 13738 1.259316 GGAACAAGCAAATAAGCGCG 58.741 50.000 0.00 0.00 40.15 6.86
4179 13739 0.635231 GAACAAGCAAATAAGCGCGC 59.365 50.000 26.66 26.66 40.15 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.821759 CCCACACGTGCTCAACCAA 60.822 57.895 17.22 0.00 0.00 3.67
1 2 2.050836 ATCCCACACGTGCTCAACCA 62.051 55.000 17.22 0.00 0.00 3.67
2 3 1.298859 GATCCCACACGTGCTCAACC 61.299 60.000 17.22 0.00 0.00 3.77
3 4 0.602638 TGATCCCACACGTGCTCAAC 60.603 55.000 17.22 3.93 0.00 3.18
4 5 0.602638 GTGATCCCACACGTGCTCAA 60.603 55.000 17.22 0.00 42.72 3.02
5 6 1.005037 GTGATCCCACACGTGCTCA 60.005 57.895 17.22 8.26 42.72 4.26
6 7 3.876300 GTGATCCCACACGTGCTC 58.124 61.111 17.22 5.64 42.72 4.26
14 15 2.101783 TGATTGCCAATGTGATCCCAC 58.898 47.619 0.00 0.00 43.46 4.61
15 16 2.528673 TGATTGCCAATGTGATCCCA 57.471 45.000 0.00 0.00 0.00 4.37
16 17 4.828939 TCTATTGATTGCCAATGTGATCCC 59.171 41.667 0.00 0.00 44.67 3.85
17 18 6.015688 ACATCTATTGATTGCCAATGTGATCC 60.016 38.462 0.00 0.00 44.67 3.36
18 19 6.978338 ACATCTATTGATTGCCAATGTGATC 58.022 36.000 0.00 0.00 44.67 2.92
19 20 6.971726 ACATCTATTGATTGCCAATGTGAT 57.028 33.333 0.00 0.00 44.67 3.06
20 21 8.354426 CAATACATCTATTGATTGCCAATGTGA 58.646 33.333 0.00 0.00 44.67 3.58
21 22 7.597369 CCAATACATCTATTGATTGCCAATGTG 59.403 37.037 0.00 0.00 44.67 3.21
22 23 7.288389 ACCAATACATCTATTGATTGCCAATGT 59.712 33.333 0.00 0.00 44.67 2.71
23 24 7.663827 ACCAATACATCTATTGATTGCCAATG 58.336 34.615 0.00 0.00 44.67 2.82
24 25 7.844493 ACCAATACATCTATTGATTGCCAAT 57.156 32.000 2.56 0.00 46.52 3.16
25 26 7.341512 TGAACCAATACATCTATTGATTGCCAA 59.658 33.333 2.56 0.00 41.31 4.52
26 27 6.832900 TGAACCAATACATCTATTGATTGCCA 59.167 34.615 2.56 0.00 41.31 4.92
27 28 7.275888 TGAACCAATACATCTATTGATTGCC 57.724 36.000 2.56 0.00 41.31 4.52
28 29 9.403110 GAATGAACCAATACATCTATTGATTGC 57.597 33.333 2.56 0.00 41.31 3.56
37 38 9.857656 ATGAACATAGAATGAACCAATACATCT 57.142 29.630 0.00 0.00 0.00 2.90
40 41 9.460019 TGAATGAACATAGAATGAACCAATACA 57.540 29.630 0.00 0.00 0.00 2.29
43 44 9.246670 TCTTGAATGAACATAGAATGAACCAAT 57.753 29.630 0.00 0.00 0.00 3.16
44 45 8.514594 GTCTTGAATGAACATAGAATGAACCAA 58.485 33.333 0.00 0.00 0.00 3.67
45 46 7.665145 TGTCTTGAATGAACATAGAATGAACCA 59.335 33.333 0.00 0.00 0.00 3.67
46 47 8.044060 TGTCTTGAATGAACATAGAATGAACC 57.956 34.615 0.00 0.00 0.00 3.62
57 58 8.828644 CCAAATCAAAATTGTCTTGAATGAACA 58.171 29.630 9.82 0.00 36.43 3.18
58 59 8.829612 ACCAAATCAAAATTGTCTTGAATGAAC 58.170 29.630 9.82 0.00 36.43 3.18
59 60 8.961294 ACCAAATCAAAATTGTCTTGAATGAA 57.039 26.923 9.82 0.00 36.43 2.57
60 61 8.828644 CAACCAAATCAAAATTGTCTTGAATGA 58.171 29.630 9.82 0.00 36.43 2.57
61 62 8.614346 ACAACCAAATCAAAATTGTCTTGAATG 58.386 29.630 9.82 0.00 36.43 2.67
62 63 8.735692 ACAACCAAATCAAAATTGTCTTGAAT 57.264 26.923 9.82 0.00 36.43 2.57
63 64 9.658799 TTACAACCAAATCAAAATTGTCTTGAA 57.341 25.926 9.82 0.00 36.43 2.69
64 65 9.658799 TTTACAACCAAATCAAAATTGTCTTGA 57.341 25.926 9.82 0.00 37.22 3.02
65 66 9.919348 CTTTACAACCAAATCAAAATTGTCTTG 57.081 29.630 0.00 0.00 35.26 3.02
66 67 8.611757 GCTTTACAACCAAATCAAAATTGTCTT 58.388 29.630 0.00 0.00 35.26 3.01
67 68 7.986889 AGCTTTACAACCAAATCAAAATTGTCT 59.013 29.630 0.00 0.00 35.26 3.41
68 69 8.141835 AGCTTTACAACCAAATCAAAATTGTC 57.858 30.769 0.00 0.00 35.26 3.18
69 70 9.777297 ATAGCTTTACAACCAAATCAAAATTGT 57.223 25.926 0.00 0.00 37.30 2.71
97 98 9.632807 CAACCCAATCGAAATTGTTTCTAATAA 57.367 29.630 0.00 0.00 40.63 1.40
98 99 8.798402 ACAACCCAATCGAAATTGTTTCTAATA 58.202 29.630 0.00 0.00 40.63 0.98
99 100 7.666623 ACAACCCAATCGAAATTGTTTCTAAT 58.333 30.769 0.00 0.00 40.63 1.73
100 101 7.045126 ACAACCCAATCGAAATTGTTTCTAA 57.955 32.000 0.00 0.00 40.63 2.10
101 102 6.642707 ACAACCCAATCGAAATTGTTTCTA 57.357 33.333 0.00 0.00 40.63 2.10
102 103 5.529581 ACAACCCAATCGAAATTGTTTCT 57.470 34.783 0.00 0.00 40.63 2.52
103 104 7.701809 TTTACAACCCAATCGAAATTGTTTC 57.298 32.000 7.96 0.00 40.63 2.78
104 105 8.669946 AATTTACAACCCAATCGAAATTGTTT 57.330 26.923 7.96 0.00 40.63 2.83
105 106 8.669946 AAATTTACAACCCAATCGAAATTGTT 57.330 26.923 7.96 0.00 40.63 2.83
106 107 8.669946 AAAATTTACAACCCAATCGAAATTGT 57.330 26.923 0.00 0.00 40.63 2.71
136 137 9.619316 CACGTCCAAATATTAATTGTCTGAAAA 57.381 29.630 0.00 0.00 0.00 2.29
137 138 7.753132 GCACGTCCAAATATTAATTGTCTGAAA 59.247 33.333 0.00 0.00 0.00 2.69
138 139 7.094592 TGCACGTCCAAATATTAATTGTCTGAA 60.095 33.333 0.00 0.00 0.00 3.02
139 140 6.372937 TGCACGTCCAAATATTAATTGTCTGA 59.627 34.615 0.00 0.00 0.00 3.27
140 141 6.550843 TGCACGTCCAAATATTAATTGTCTG 58.449 36.000 0.00 0.00 0.00 3.51
141 142 6.751514 TGCACGTCCAAATATTAATTGTCT 57.248 33.333 0.00 0.00 0.00 3.41
142 143 7.540745 AGTTTGCACGTCCAAATATTAATTGTC 59.459 33.333 8.09 0.00 37.09 3.18
143 144 7.375053 AGTTTGCACGTCCAAATATTAATTGT 58.625 30.769 8.09 0.00 37.09 2.71
144 145 7.810766 AGTTTGCACGTCCAAATATTAATTG 57.189 32.000 8.09 0.00 37.09 2.32
145 146 8.736244 ACTAGTTTGCACGTCCAAATATTAATT 58.264 29.630 8.09 0.00 37.09 1.40
146 147 8.276252 ACTAGTTTGCACGTCCAAATATTAAT 57.724 30.769 8.09 0.00 37.09 1.40
147 148 7.675962 ACTAGTTTGCACGTCCAAATATTAA 57.324 32.000 8.09 0.00 37.09 1.40
148 149 7.675962 AACTAGTTTGCACGTCCAAATATTA 57.324 32.000 8.09 1.46 37.09 0.98
149 150 6.569179 AACTAGTTTGCACGTCCAAATATT 57.431 33.333 8.09 0.31 37.09 1.28
150 151 6.569179 AAACTAGTTTGCACGTCCAAATAT 57.431 33.333 19.94 3.07 37.09 1.28
151 152 6.038382 TCAAAACTAGTTTGCACGTCCAAATA 59.962 34.615 21.22 1.63 45.38 1.40
152 153 4.911514 AAACTAGTTTGCACGTCCAAAT 57.088 36.364 19.94 0.50 37.09 2.32
153 154 4.156190 TCAAAACTAGTTTGCACGTCCAAA 59.844 37.500 21.22 0.00 45.38 3.28
154 155 3.690139 TCAAAACTAGTTTGCACGTCCAA 59.310 39.130 21.22 0.00 45.38 3.53
155 156 3.271729 TCAAAACTAGTTTGCACGTCCA 58.728 40.909 21.22 0.00 45.38 4.02
156 157 3.955771 TCAAAACTAGTTTGCACGTCC 57.044 42.857 21.22 0.00 45.38 4.79
157 158 9.601971 TTTTATATCAAAACTAGTTTGCACGTC 57.398 29.630 21.22 0.00 45.38 4.34
158 159 9.953697 TTTTTATATCAAAACTAGTTTGCACGT 57.046 25.926 21.22 10.48 45.38 4.49
194 195 1.614850 GCCCCATCCTGTCCGTAAAAA 60.615 52.381 0.00 0.00 0.00 1.94
195 196 0.034863 GCCCCATCCTGTCCGTAAAA 60.035 55.000 0.00 0.00 0.00 1.52
196 197 1.202099 TGCCCCATCCTGTCCGTAAA 61.202 55.000 0.00 0.00 0.00 2.01
197 198 1.202099 TTGCCCCATCCTGTCCGTAA 61.202 55.000 0.00 0.00 0.00 3.18
198 199 1.202099 TTTGCCCCATCCTGTCCGTA 61.202 55.000 0.00 0.00 0.00 4.02
199 200 2.534396 TTTGCCCCATCCTGTCCGT 61.534 57.895 0.00 0.00 0.00 4.69
200 201 2.046285 GTTTGCCCCATCCTGTCCG 61.046 63.158 0.00 0.00 0.00 4.79
201 202 2.046285 CGTTTGCCCCATCCTGTCC 61.046 63.158 0.00 0.00 0.00 4.02
202 203 2.046285 CCGTTTGCCCCATCCTGTC 61.046 63.158 0.00 0.00 0.00 3.51
203 204 1.863155 ATCCGTTTGCCCCATCCTGT 61.863 55.000 0.00 0.00 0.00 4.00
204 205 1.076777 ATCCGTTTGCCCCATCCTG 60.077 57.895 0.00 0.00 0.00 3.86
205 206 1.076777 CATCCGTTTGCCCCATCCT 60.077 57.895 0.00 0.00 0.00 3.24
206 207 2.785425 GCATCCGTTTGCCCCATCC 61.785 63.158 0.00 0.00 36.60 3.51
207 208 2.807622 GCATCCGTTTGCCCCATC 59.192 61.111 0.00 0.00 36.60 3.51
208 209 3.140141 CGCATCCGTTTGCCCCAT 61.140 61.111 1.70 0.00 39.52 4.00
246 247 3.687321 CTGTCCTGGGATGCGGTGG 62.687 68.421 0.00 0.00 0.00 4.61
247 248 2.124983 CTGTCCTGGGATGCGGTG 60.125 66.667 0.00 0.00 0.00 4.94
248 249 3.402681 CCTGTCCTGGGATGCGGT 61.403 66.667 0.00 0.00 0.00 5.68
249 250 4.864334 GCCTGTCCTGGGATGCGG 62.864 72.222 0.00 0.00 0.00 5.69
250 251 4.864334 GGCCTGTCCTGGGATGCG 62.864 72.222 0.00 0.00 0.00 4.73
251 252 4.512914 GGGCCTGTCCTGGGATGC 62.513 72.222 0.84 0.00 34.39 3.91
252 253 4.181010 CGGGCCTGTCCTGGGATG 62.181 72.222 2.29 0.00 37.58 3.51
257 258 4.394712 GTGTCCGGGCCTGTCCTG 62.395 72.222 11.58 0.00 41.11 3.86
260 261 3.718210 GATCGTGTCCGGGCCTGTC 62.718 68.421 11.58 3.86 33.95 3.51
261 262 3.771160 GATCGTGTCCGGGCCTGT 61.771 66.667 11.58 0.00 33.95 4.00
262 263 4.530857 GGATCGTGTCCGGGCCTG 62.531 72.222 2.12 3.88 37.23 4.85
270 271 3.069586 TGTTAGGATGATGGGATCGTGTC 59.930 47.826 0.00 0.00 0.00 3.67
271 272 3.038280 TGTTAGGATGATGGGATCGTGT 58.962 45.455 0.00 0.00 0.00 4.49
272 273 3.751479 TGTTAGGATGATGGGATCGTG 57.249 47.619 0.00 0.00 0.00 4.35
273 274 4.771114 TTTGTTAGGATGATGGGATCGT 57.229 40.909 0.00 0.00 0.00 3.73
274 275 5.182001 GGATTTTGTTAGGATGATGGGATCG 59.818 44.000 0.00 0.00 0.00 3.69
275 276 5.182001 CGGATTTTGTTAGGATGATGGGATC 59.818 44.000 0.00 0.00 0.00 3.36
276 277 5.072741 CGGATTTTGTTAGGATGATGGGAT 58.927 41.667 0.00 0.00 0.00 3.85
277 278 4.460263 CGGATTTTGTTAGGATGATGGGA 58.540 43.478 0.00 0.00 0.00 4.37
278 279 3.569701 CCGGATTTTGTTAGGATGATGGG 59.430 47.826 0.00 0.00 0.00 4.00
279 280 3.004734 GCCGGATTTTGTTAGGATGATGG 59.995 47.826 5.05 0.00 0.00 3.51
280 281 3.885297 AGCCGGATTTTGTTAGGATGATG 59.115 43.478 5.05 0.00 0.00 3.07
281 282 4.170468 AGCCGGATTTTGTTAGGATGAT 57.830 40.909 5.05 0.00 0.00 2.45
282 283 3.644966 AGCCGGATTTTGTTAGGATGA 57.355 42.857 5.05 0.00 0.00 2.92
283 284 4.036380 GGTTAGCCGGATTTTGTTAGGATG 59.964 45.833 5.05 0.00 0.00 3.51
284 285 4.204799 GGTTAGCCGGATTTTGTTAGGAT 58.795 43.478 5.05 0.00 0.00 3.24
285 286 3.613030 GGTTAGCCGGATTTTGTTAGGA 58.387 45.455 5.05 0.00 0.00 2.94
313 314 1.302192 ACCACGTGATCCCAAACGG 60.302 57.895 19.30 0.00 43.96 4.44
314 315 1.573829 CCACCACGTGATCCCAAACG 61.574 60.000 19.30 0.00 45.15 3.60
315 316 0.250553 TCCACCACGTGATCCCAAAC 60.251 55.000 19.30 0.00 35.23 2.93
316 317 0.036164 CTCCACCACGTGATCCCAAA 59.964 55.000 19.30 0.00 35.23 3.28
317 318 1.125093 ACTCCACCACGTGATCCCAA 61.125 55.000 19.30 0.00 35.23 4.12
318 319 1.125093 AACTCCACCACGTGATCCCA 61.125 55.000 19.30 0.00 35.23 4.37
319 320 0.673644 CAACTCCACCACGTGATCCC 60.674 60.000 19.30 0.00 35.23 3.85
320 321 0.673644 CCAACTCCACCACGTGATCC 60.674 60.000 19.30 0.00 35.23 3.36
321 322 1.298859 GCCAACTCCACCACGTGATC 61.299 60.000 19.30 0.00 35.23 2.92
322 323 1.302511 GCCAACTCCACCACGTGAT 60.303 57.895 19.30 0.00 35.23 3.06
323 324 2.110213 GCCAACTCCACCACGTGA 59.890 61.111 19.30 0.00 35.23 4.35
324 325 2.107041 TAGGCCAACTCCACCACGTG 62.107 60.000 9.08 9.08 0.00 4.49
325 326 1.412453 TTAGGCCAACTCCACCACGT 61.412 55.000 5.01 0.00 0.00 4.49
326 327 0.250553 TTTAGGCCAACTCCACCACG 60.251 55.000 5.01 0.00 0.00 4.94
327 328 1.989706 TTTTAGGCCAACTCCACCAC 58.010 50.000 5.01 0.00 0.00 4.16
328 329 2.593026 CTTTTTAGGCCAACTCCACCA 58.407 47.619 5.01 0.00 0.00 4.17
329 330 1.893137 CCTTTTTAGGCCAACTCCACC 59.107 52.381 5.01 0.00 0.00 4.61
330 331 2.594131 ACCTTTTTAGGCCAACTCCAC 58.406 47.619 5.01 0.00 0.00 4.02
331 332 4.456662 TTACCTTTTTAGGCCAACTCCA 57.543 40.909 5.01 0.00 0.00 3.86
332 333 5.074804 TCTTTACCTTTTTAGGCCAACTCC 58.925 41.667 5.01 0.00 0.00 3.85
333 334 6.644248 TTCTTTACCTTTTTAGGCCAACTC 57.356 37.500 5.01 0.00 0.00 3.01
334 335 6.041637 CCTTTCTTTACCTTTTTAGGCCAACT 59.958 38.462 5.01 0.00 0.00 3.16
335 336 6.220930 CCTTTCTTTACCTTTTTAGGCCAAC 58.779 40.000 5.01 0.00 0.00 3.77
336 337 5.305902 CCCTTTCTTTACCTTTTTAGGCCAA 59.694 40.000 5.01 0.00 0.00 4.52
337 338 4.836175 CCCTTTCTTTACCTTTTTAGGCCA 59.164 41.667 5.01 0.00 0.00 5.36
338 339 5.047519 GTCCCTTTCTTTACCTTTTTAGGCC 60.048 44.000 0.00 0.00 0.00 5.19
339 340 5.773680 AGTCCCTTTCTTTACCTTTTTAGGC 59.226 40.000 0.00 0.00 0.00 3.93
340 341 6.148976 CGAGTCCCTTTCTTTACCTTTTTAGG 59.851 42.308 0.00 0.00 0.00 2.69
341 342 6.709397 ACGAGTCCCTTTCTTTACCTTTTTAG 59.291 38.462 0.00 0.00 0.00 1.85
342 343 6.594744 ACGAGTCCCTTTCTTTACCTTTTTA 58.405 36.000 0.00 0.00 0.00 1.52
343 344 5.443283 ACGAGTCCCTTTCTTTACCTTTTT 58.557 37.500 0.00 0.00 0.00 1.94
344 345 5.045012 ACGAGTCCCTTTCTTTACCTTTT 57.955 39.130 0.00 0.00 0.00 2.27
345 346 4.504514 GGACGAGTCCCTTTCTTTACCTTT 60.505 45.833 11.07 0.00 43.94 3.11
346 347 3.007723 GGACGAGTCCCTTTCTTTACCTT 59.992 47.826 11.07 0.00 43.94 3.50
347 348 2.566279 GGACGAGTCCCTTTCTTTACCT 59.434 50.000 11.07 0.00 43.94 3.08
348 349 2.969990 GGACGAGTCCCTTTCTTTACC 58.030 52.381 11.07 0.00 43.94 2.85
360 361 1.001406 GGATGGATGGATGGACGAGTC 59.999 57.143 0.00 0.00 0.00 3.36
361 362 1.051812 GGATGGATGGATGGACGAGT 58.948 55.000 0.00 0.00 0.00 4.18
362 363 1.051008 TGGATGGATGGATGGACGAG 58.949 55.000 0.00 0.00 0.00 4.18
363 364 1.348696 CATGGATGGATGGATGGACGA 59.651 52.381 0.00 0.00 0.00 4.20
364 365 1.817357 CATGGATGGATGGATGGACG 58.183 55.000 0.00 0.00 0.00 4.79
365 366 1.542492 GCATGGATGGATGGATGGAC 58.458 55.000 0.00 0.00 0.00 4.02
366 367 0.406750 GGCATGGATGGATGGATGGA 59.593 55.000 0.00 0.00 0.00 3.41
367 368 0.613853 GGGCATGGATGGATGGATGG 60.614 60.000 0.00 0.00 0.00 3.51
368 369 0.963856 CGGGCATGGATGGATGGATG 60.964 60.000 0.00 0.00 0.00 3.51
369 370 1.381463 CGGGCATGGATGGATGGAT 59.619 57.895 0.00 0.00 0.00 3.41
370 371 2.078044 ACGGGCATGGATGGATGGA 61.078 57.895 0.00 0.00 0.00 3.41
371 372 1.900016 CACGGGCATGGATGGATGG 60.900 63.158 0.00 0.00 0.00 3.51
497 498 3.278574 CTGATGGGACGCAAAGGAAATA 58.721 45.455 0.00 0.00 0.00 1.40
663 672 8.066612 ACCAATTTGATTTACTAGATGGTTGG 57.933 34.615 0.00 0.00 35.20 3.77
670 679 9.802039 ACCACTAAACCAATTTGATTTACTAGA 57.198 29.630 0.00 0.00 0.00 2.43
688 697 1.180456 TCTCCGTCGGCACCACTAAA 61.180 55.000 6.34 0.00 0.00 1.85
842 858 4.124351 TGGTCGCCGGTGTCGATC 62.124 66.667 16.01 10.63 38.29 3.69
843 859 4.129737 CTGGTCGCCGGTGTCGAT 62.130 66.667 16.01 0.00 38.29 3.59
845 861 3.678717 CTACTGGTCGCCGGTGTCG 62.679 68.421 16.01 3.95 43.80 4.35
846 862 2.181021 CTACTGGTCGCCGGTGTC 59.819 66.667 16.01 9.60 43.80 3.67
866 882 8.194104 CCTAATATATATGAAACGAGAGCTGCT 58.806 37.037 0.00 0.00 0.00 4.24
880 896 4.230657 GAGCGCGAGGCCTAATATATATG 58.769 47.826 12.10 0.00 45.17 1.78
1086 1114 0.323908 ACGACAAGGAGGAGGAGGAG 60.324 60.000 0.00 0.00 0.00 3.69
1087 1115 0.323542 GACGACAAGGAGGAGGAGGA 60.324 60.000 0.00 0.00 0.00 3.71
1088 1116 1.324005 GGACGACAAGGAGGAGGAGG 61.324 65.000 0.00 0.00 0.00 4.30
1162 1203 2.291508 ATTCACGCGCGCATACACAC 62.292 55.000 32.58 0.00 0.00 3.82
1163 1204 2.097635 ATTCACGCGCGCATACACA 61.098 52.632 32.58 9.64 0.00 3.72
1352 1397 0.895530 TGGTGGGAGACATCGAAGAC 59.104 55.000 0.00 0.00 42.51 3.01
1422 1467 2.352342 GGTCGAGAGTCTAACGAAGAGG 59.648 54.545 5.59 0.00 37.77 3.69
1497 1548 0.578683 CAGCAATGCACGGAGTATCG 59.421 55.000 8.35 0.00 41.61 2.92
1507 1558 2.362760 AATCCCCGCAGCAATGCA 60.363 55.556 8.35 0.00 34.41 3.96
1509 1560 1.606885 AACCAATCCCCGCAGCAATG 61.607 55.000 0.00 0.00 0.00 2.82
1517 1568 6.458232 TCAAAATATTACAACCAATCCCCG 57.542 37.500 0.00 0.00 0.00 5.73
1518 1569 9.679661 AATTTCAAAATATTACAACCAATCCCC 57.320 29.630 0.00 0.00 0.00 4.81
1572 1629 9.667107 ACAACTATATAACAAGCACATACAAGT 57.333 29.630 0.00 0.00 0.00 3.16
1614 1671 7.578310 AACATGCATGAGAAATGCTACTTAT 57.422 32.000 32.75 1.36 44.79 1.73
1630 1687 9.868277 GCTACTTATATCTCTCTTAACATGCAT 57.132 33.333 0.00 0.00 0.00 3.96
1641 1698 6.804295 CACCAATCACGCTACTTATATCTCTC 59.196 42.308 0.00 0.00 0.00 3.20
1656 1713 3.557185 CACATATCACCTCACCAATCACG 59.443 47.826 0.00 0.00 0.00 4.35
1668 1725 4.161565 TCCTAACTCACCACACATATCACC 59.838 45.833 0.00 0.00 0.00 4.02
1673 1730 4.530553 ACACATCCTAACTCACCACACATA 59.469 41.667 0.00 0.00 0.00 2.29
1676 1733 3.067106 CACACATCCTAACTCACCACAC 58.933 50.000 0.00 0.00 0.00 3.82
1678 1735 2.076863 GCACACATCCTAACTCACCAC 58.923 52.381 0.00 0.00 0.00 4.16
1681 1738 3.338249 ACATGCACACATCCTAACTCAC 58.662 45.455 0.00 0.00 32.87 3.51
1687 2010 3.007831 TCACTCAACATGCACACATCCTA 59.992 43.478 0.00 0.00 32.87 2.94
1694 2017 2.865119 ATCCTCACTCAACATGCACA 57.135 45.000 0.00 0.00 0.00 4.57
1696 2019 9.440773 GATATTTATATCCTCACTCAACATGCA 57.559 33.333 0.00 0.00 34.46 3.96
1697 2020 9.440773 TGATATTTATATCCTCACTCAACATGC 57.559 33.333 7.16 0.00 38.66 4.06
1756 2272 8.546322 ACATGCATATATGTCACCTTATCATCT 58.454 33.333 14.14 0.00 36.60 2.90
1757 2273 8.728337 ACATGCATATATGTCACCTTATCATC 57.272 34.615 14.14 0.00 36.60 2.92
1763 2279 8.432013 TCTCTTAACATGCATATATGTCACCTT 58.568 33.333 14.14 9.32 40.24 3.50
1766 2282 9.265901 AGTTCTCTTAACATGCATATATGTCAC 57.734 33.333 14.14 0.00 40.24 3.67
1769 2285 9.486497 CTCAGTTCTCTTAACATGCATATATGT 57.514 33.333 14.14 0.00 42.82 2.29
1775 2291 5.798132 TGTCTCAGTTCTCTTAACATGCAT 58.202 37.500 0.00 0.00 0.00 3.96
1791 2307 6.723298 AATAGTTGATCCCTACTGTCTCAG 57.277 41.667 0.00 0.00 37.52 3.35
1793 2309 7.288158 ACCTAAATAGTTGATCCCTACTGTCTC 59.712 40.741 0.00 0.00 31.18 3.36
1797 2313 7.070074 AGTGACCTAAATAGTTGATCCCTACTG 59.930 40.741 0.00 0.00 31.18 2.74
1798 2314 7.133483 AGTGACCTAAATAGTTGATCCCTACT 58.867 38.462 0.00 0.00 33.20 2.57
1799 2315 7.362802 AGTGACCTAAATAGTTGATCCCTAC 57.637 40.000 0.00 0.00 0.00 3.18
1820 2336 8.649841 CCATTTTTGACACTGCAATTATAAGTG 58.350 33.333 8.54 8.54 45.46 3.16
1821 2337 7.818930 CCCATTTTTGACACTGCAATTATAAGT 59.181 33.333 0.00 0.00 0.00 2.24
1822 2338 7.818930 ACCCATTTTTGACACTGCAATTATAAG 59.181 33.333 0.00 0.00 0.00 1.73
1826 2360 5.543507 ACCCATTTTTGACACTGCAATTA 57.456 34.783 0.00 0.00 0.00 1.40
1845 2379 5.975344 GCAGTGAAGTGTTTTAAAGTTACCC 59.025 40.000 0.00 0.00 0.00 3.69
1851 2385 7.992180 AAATCTGCAGTGAAGTGTTTTAAAG 57.008 32.000 14.67 0.00 0.00 1.85
1864 2398 7.800380 CACTTCAACTAACTAAAATCTGCAGTG 59.200 37.037 14.67 0.00 0.00 3.66
1865 2399 7.041098 CCACTTCAACTAACTAAAATCTGCAGT 60.041 37.037 14.67 0.00 0.00 4.40
1866 2400 7.301054 CCACTTCAACTAACTAAAATCTGCAG 58.699 38.462 7.63 7.63 0.00 4.41
1867 2401 6.206634 CCCACTTCAACTAACTAAAATCTGCA 59.793 38.462 0.00 0.00 0.00 4.41
1868 2402 6.430000 TCCCACTTCAACTAACTAAAATCTGC 59.570 38.462 0.00 0.00 0.00 4.26
1869 2403 7.979444 TCCCACTTCAACTAACTAAAATCTG 57.021 36.000 0.00 0.00 0.00 2.90
1870 2404 9.232473 GATTCCCACTTCAACTAACTAAAATCT 57.768 33.333 0.00 0.00 0.00 2.40
1871 2405 9.010029 TGATTCCCACTTCAACTAACTAAAATC 57.990 33.333 0.00 0.00 0.00 2.17
1873 2407 8.215050 TCTGATTCCCACTTCAACTAACTAAAA 58.785 33.333 0.00 0.00 0.00 1.52
1880 2414 4.536090 ACCATCTGATTCCCACTTCAACTA 59.464 41.667 0.00 0.00 0.00 2.24
1881 2415 3.331889 ACCATCTGATTCCCACTTCAACT 59.668 43.478 0.00 0.00 0.00 3.16
1893 2427 5.598005 TGGTTTTCAAGACAACCATCTGATT 59.402 36.000 14.94 0.00 46.16 2.57
1916 2450 5.514914 ACGTTTTTGCAGTCAAATGTAAGTG 59.485 36.000 9.88 0.00 41.37 3.16
1942 5087 9.976255 TGAACAGTTTACATGCGTAAAATATAC 57.024 29.630 0.00 0.00 46.46 1.47
2010 5219 6.377996 TCATTTTTGGAAATCTGACATCGGAT 59.622 34.615 0.00 0.00 43.43 4.18
2087 5296 8.624776 TGATAATATACATCTCCTACATCTGCG 58.375 37.037 0.45 0.00 0.00 5.18
2192 5401 1.448985 GCCTTTCTGCCATCGTTACA 58.551 50.000 0.00 0.00 0.00 2.41
2355 6606 7.997773 ATGTCTGCAAGCATGAATATTAGAT 57.002 32.000 0.00 0.00 31.23 1.98
2557 7220 6.019801 CGTACGAAAAGATATATGCCATAGCC 60.020 42.308 10.44 0.00 38.69 3.93
2621 7293 6.792424 ACTAGTCCTGATATCCTACCTAACC 58.208 44.000 0.00 0.00 0.00 2.85
2622 7294 7.309316 GCAACTAGTCCTGATATCCTACCTAAC 60.309 44.444 0.00 0.00 0.00 2.34
2667 7339 2.776536 CAACATCTTCCCCTCTCTCCAT 59.223 50.000 0.00 0.00 0.00 3.41
2677 7349 2.031157 CACACGGTTTCAACATCTTCCC 60.031 50.000 0.00 0.00 0.00 3.97
2678 7350 2.031157 CCACACGGTTTCAACATCTTCC 60.031 50.000 0.00 0.00 0.00 3.46
2679 7351 2.031157 CCCACACGGTTTCAACATCTTC 60.031 50.000 0.00 0.00 0.00 2.87
2681 7353 1.133915 ACCCACACGGTTTCAACATCT 60.134 47.619 0.00 0.00 45.36 2.90
2682 7354 1.314730 ACCCACACGGTTTCAACATC 58.685 50.000 0.00 0.00 45.36 3.06
2766 7438 1.206072 GTATGCGCATGCTGCTAGC 59.794 57.895 32.48 18.40 42.25 3.42
2812 7484 2.343101 TCAAATCGGTCGTTGATGTCC 58.657 47.619 0.00 0.00 0.00 4.02
2819 7491 1.734163 GGTCCATCAAATCGGTCGTT 58.266 50.000 0.00 0.00 0.00 3.85
2842 7514 2.351350 CGTGGTGTTTGATTTGGTAGGC 60.351 50.000 0.00 0.00 0.00 3.93
2883 7555 1.098050 CCAAATCCTGCTTTCCTCGG 58.902 55.000 0.00 0.00 0.00 4.63
2921 7593 1.271549 GCACACGTACACACACACG 59.728 57.895 0.00 0.00 43.63 4.49
2924 7596 0.384230 GCATGCACACGTACACACAC 60.384 55.000 14.21 0.00 0.00 3.82
2925 7597 0.811616 TGCATGCACACGTACACACA 60.812 50.000 18.46 0.00 0.00 3.72
2926 7598 0.384230 GTGCATGCACACGTACACAC 60.384 55.000 39.12 13.39 45.53 3.82
2927 7599 1.938125 GTGCATGCACACGTACACA 59.062 52.632 39.12 4.32 45.53 3.72
2928 7600 4.818417 GTGCATGCACACGTACAC 57.182 55.556 39.12 14.86 45.53 2.90
2934 7606 2.267426 TGATACTACGTGCATGCACAC 58.733 47.619 40.95 22.45 46.47 3.82
2935 7607 2.663826 TGATACTACGTGCATGCACA 57.336 45.000 40.95 26.68 46.47 4.57
2936 7608 3.384668 AGATGATACTACGTGCATGCAC 58.615 45.455 35.76 35.76 43.01 4.57
2993 7665 8.674607 CCCAAAAGATTTGGAGTAGTATGTAAC 58.325 37.037 20.56 0.00 42.06 2.50
2998 7673 5.888161 CAGCCCAAAAGATTTGGAGTAGTAT 59.112 40.000 20.56 0.00 42.06 2.12
3002 7677 4.112634 ACAGCCCAAAAGATTTGGAGTA 57.887 40.909 20.56 0.00 42.06 2.59
3126 7801 4.030452 GTTGCTGCTGACGGTGGC 62.030 66.667 0.00 0.00 0.00 5.01
3232 7907 9.851686 TCACCAGAACAATTAGCTATAATCAAT 57.148 29.630 0.00 0.00 31.02 2.57
3241 7916 7.281774 CACTGATAATCACCAGAACAATTAGCT 59.718 37.037 0.00 0.00 34.65 3.32
3253 7935 9.492973 CACATGAATATACACTGATAATCACCA 57.507 33.333 0.00 0.00 26.80 4.17
3301 7985 8.852135 AGAAGAAGTATCTATACTAGTGCAACC 58.148 37.037 5.39 0.00 42.47 3.77
3328 8012 2.303175 ACTAGTGCTTTCCCGCAAAAA 58.697 42.857 0.00 0.00 42.32 1.94
3329 8013 1.975660 ACTAGTGCTTTCCCGCAAAA 58.024 45.000 0.00 0.00 42.32 2.44
3330 8014 2.843401 TACTAGTGCTTTCCCGCAAA 57.157 45.000 5.39 0.00 42.32 3.68
3331 8015 3.702548 TCTATACTAGTGCTTTCCCGCAA 59.297 43.478 5.39 0.00 42.32 4.85
3332 8016 3.293337 TCTATACTAGTGCTTTCCCGCA 58.707 45.455 5.39 0.00 37.62 5.69
3333 8017 4.522722 ATCTATACTAGTGCTTTCCCGC 57.477 45.455 5.39 0.00 0.00 6.13
3334 8018 5.180868 ACGTATCTATACTAGTGCTTTCCCG 59.819 44.000 5.39 3.38 0.00 5.14
3335 8019 6.380190 CACGTATCTATACTAGTGCTTTCCC 58.620 44.000 5.39 0.00 0.00 3.97
3336 8020 5.857517 GCACGTATCTATACTAGTGCTTTCC 59.142 44.000 18.22 0.00 42.31 3.13
3337 8021 6.436261 TGCACGTATCTATACTAGTGCTTTC 58.564 40.000 22.41 6.01 44.10 2.62
3338 8022 6.387041 TGCACGTATCTATACTAGTGCTTT 57.613 37.500 22.41 0.00 44.10 3.51
3339 8023 6.183360 TGTTGCACGTATCTATACTAGTGCTT 60.183 38.462 22.41 0.00 44.10 3.91
3340 8024 5.298527 TGTTGCACGTATCTATACTAGTGCT 59.701 40.000 22.41 0.00 44.10 4.40
3341 8025 5.516996 TGTTGCACGTATCTATACTAGTGC 58.483 41.667 18.47 18.47 44.06 4.40
3342 8026 6.956047 TCTGTTGCACGTATCTATACTAGTG 58.044 40.000 5.39 2.28 31.81 2.74
3343 8027 7.563888 TTCTGTTGCACGTATCTATACTAGT 57.436 36.000 0.00 0.00 0.00 2.57
3344 8028 9.464714 AAATTCTGTTGCACGTATCTATACTAG 57.535 33.333 0.00 0.00 0.00 2.57
3345 8029 9.244799 CAAATTCTGTTGCACGTATCTATACTA 57.755 33.333 0.00 0.00 0.00 1.82
3346 8030 7.224753 CCAAATTCTGTTGCACGTATCTATACT 59.775 37.037 0.00 0.00 0.00 2.12
3347 8031 7.011109 ACCAAATTCTGTTGCACGTATCTATAC 59.989 37.037 0.00 0.00 0.00 1.47
3348 8032 7.045416 ACCAAATTCTGTTGCACGTATCTATA 58.955 34.615 0.00 0.00 0.00 1.31
3349 8033 5.880332 ACCAAATTCTGTTGCACGTATCTAT 59.120 36.000 0.00 0.00 0.00 1.98
3350 8034 5.242434 ACCAAATTCTGTTGCACGTATCTA 58.758 37.500 0.00 0.00 0.00 1.98
3351 8035 4.072131 ACCAAATTCTGTTGCACGTATCT 58.928 39.130 0.00 0.00 0.00 1.98
3352 8036 4.419522 ACCAAATTCTGTTGCACGTATC 57.580 40.909 0.00 0.00 0.00 2.24
3353 8037 4.142687 GCTACCAAATTCTGTTGCACGTAT 60.143 41.667 8.23 0.00 34.15 3.06
3354 8038 3.187637 GCTACCAAATTCTGTTGCACGTA 59.812 43.478 8.23 0.00 34.15 3.57
3355 8039 2.031157 GCTACCAAATTCTGTTGCACGT 60.031 45.455 8.23 0.00 34.15 4.49
3356 8040 2.584791 GCTACCAAATTCTGTTGCACG 58.415 47.619 8.23 0.00 34.15 5.34
3363 8047 0.451783 GCCACCGCTACCAAATTCTG 59.548 55.000 0.00 0.00 0.00 3.02
3406 8090 7.919091 AGTGCATGCAAAATTAATCATCTGTAG 59.081 33.333 24.58 0.00 0.00 2.74
3535 9706 1.605058 GCTCAACGGCTGTAGAGGGA 61.605 60.000 0.00 0.00 0.00 4.20
3579 9751 6.339587 TGAAATTCCTTTAACCTCGCAAAT 57.660 33.333 0.00 0.00 0.00 2.32
3586 9758 6.916360 TGAGCAATGAAATTCCTTTAACCT 57.084 33.333 0.00 0.00 31.22 3.50
3632 9804 5.362717 GCCTTGCTAATATACCCCAACTTTT 59.637 40.000 0.00 0.00 0.00 2.27
3645 9817 3.951680 GCTAAAACCTGGCCTTGCTAATA 59.048 43.478 3.32 0.00 0.00 0.98
3651 13173 1.337118 TTGGCTAAAACCTGGCCTTG 58.663 50.000 3.32 0.00 45.45 3.61
3676 13198 2.047061 AGTTGTGTGGAAGCTAGGACA 58.953 47.619 0.00 0.00 0.00 4.02
3791 13351 1.529865 CGCTGCATGTGATGATGGTAG 59.470 52.381 0.00 0.00 0.00 3.18
3794 13354 0.306840 GTCGCTGCATGTGATGATGG 59.693 55.000 0.00 0.00 37.53 3.51
3840 13400 2.282462 GGTCTGGTTGCTGTGGGG 60.282 66.667 0.00 0.00 0.00 4.96
3878 13438 6.840705 ACTTGTATTTAGGTACGGAGGGAATA 59.159 38.462 0.00 0.00 0.00 1.75
3879 13439 5.664457 ACTTGTATTTAGGTACGGAGGGAAT 59.336 40.000 0.00 0.00 0.00 3.01
3880 13440 5.025453 ACTTGTATTTAGGTACGGAGGGAA 58.975 41.667 0.00 0.00 0.00 3.97
3881 13441 4.613437 ACTTGTATTTAGGTACGGAGGGA 58.387 43.478 0.00 0.00 0.00 4.20
3882 13442 4.403432 TGACTTGTATTTAGGTACGGAGGG 59.597 45.833 0.00 0.00 0.00 4.30
3883 13443 5.587388 TGACTTGTATTTAGGTACGGAGG 57.413 43.478 0.00 0.00 0.00 4.30
3884 13444 8.488651 AAAATGACTTGTATTTAGGTACGGAG 57.511 34.615 0.00 0.00 0.00 4.63
3885 13445 9.941325 TTAAAATGACTTGTATTTAGGTACGGA 57.059 29.630 0.00 0.00 0.00 4.69
3967 13527 9.434420 AGAACTACGTACGAATCTATATAAGCT 57.566 33.333 24.41 0.00 0.00 3.74
3972 13532 9.935241 TCCTAAGAACTACGTACGAATCTATAT 57.065 33.333 24.41 7.15 0.00 0.86
3973 13533 9.764363 TTCCTAAGAACTACGTACGAATCTATA 57.236 33.333 24.41 1.19 0.00 1.31
3974 13534 8.668510 TTCCTAAGAACTACGTACGAATCTAT 57.331 34.615 24.41 0.00 0.00 1.98
3976 13536 6.992063 TTCCTAAGAACTACGTACGAATCT 57.008 37.500 24.41 15.35 0.00 2.40
3990 13550 2.617840 ACTCCCTCCGTTCCTAAGAA 57.382 50.000 0.00 0.00 0.00 2.52
3991 13551 3.967467 ATACTCCCTCCGTTCCTAAGA 57.033 47.619 0.00 0.00 0.00 2.10
3992 13552 5.832060 TCTTTATACTCCCTCCGTTCCTAAG 59.168 44.000 0.00 0.00 0.00 2.18
3993 13553 5.769835 TCTTTATACTCCCTCCGTTCCTAA 58.230 41.667 0.00 0.00 0.00 2.69
3994 13554 5.393068 TCTTTATACTCCCTCCGTTCCTA 57.607 43.478 0.00 0.00 0.00 2.94
3995 13555 4.261411 TCTTTATACTCCCTCCGTTCCT 57.739 45.455 0.00 0.00 0.00 3.36
3996 13556 4.691175 GTTCTTTATACTCCCTCCGTTCC 58.309 47.826 0.00 0.00 0.00 3.62
3997 13557 4.096984 TCGTTCTTTATACTCCCTCCGTTC 59.903 45.833 0.00 0.00 0.00 3.95
3998 13558 4.019174 TCGTTCTTTATACTCCCTCCGTT 58.981 43.478 0.00 0.00 0.00 4.44
3999 13559 3.624777 TCGTTCTTTATACTCCCTCCGT 58.375 45.455 0.00 0.00 0.00 4.69
4000 13560 4.357996 GTTCGTTCTTTATACTCCCTCCG 58.642 47.826 0.00 0.00 0.00 4.63
4001 13561 4.096984 TCGTTCGTTCTTTATACTCCCTCC 59.903 45.833 0.00 0.00 0.00 4.30
4002 13562 5.240713 TCGTTCGTTCTTTATACTCCCTC 57.759 43.478 0.00 0.00 0.00 4.30
4003 13563 5.405797 GTTCGTTCGTTCTTTATACTCCCT 58.594 41.667 0.00 0.00 0.00 4.20
4004 13564 4.263911 CGTTCGTTCGTTCTTTATACTCCC 59.736 45.833 0.00 0.00 0.00 4.30
4005 13565 5.088739 TCGTTCGTTCGTTCTTTATACTCC 58.911 41.667 2.67 0.00 0.00 3.85
4006 13566 5.226772 CCTCGTTCGTTCGTTCTTTATACTC 59.773 44.000 2.67 0.00 0.00 2.59
4007 13567 5.091431 CCTCGTTCGTTCGTTCTTTATACT 58.909 41.667 2.67 0.00 0.00 2.12
4008 13568 4.263911 CCCTCGTTCGTTCGTTCTTTATAC 59.736 45.833 2.67 0.00 0.00 1.47
4031 13591 7.042335 GGGCAATATATGATAGAGTACACACC 58.958 42.308 0.00 0.00 0.00 4.16
4032 13592 6.752351 CGGGCAATATATGATAGAGTACACAC 59.248 42.308 0.00 0.00 0.00 3.82
4033 13593 6.127451 CCGGGCAATATATGATAGAGTACACA 60.127 42.308 0.00 0.00 0.00 3.72
4034 13594 6.127423 ACCGGGCAATATATGATAGAGTACAC 60.127 42.308 6.32 0.00 0.00 2.90
4064 13624 3.349006 GCACAGACCAGCACACCG 61.349 66.667 0.00 0.00 0.00 4.94
4072 13632 4.021368 GGACTCTAGTTAAAGCACAGACCA 60.021 45.833 0.00 0.00 0.00 4.02
4073 13633 4.221041 AGGACTCTAGTTAAAGCACAGACC 59.779 45.833 0.00 0.00 0.00 3.85
4082 13642 7.037442 ACCTCAGACTCTAGGACTCTAGTTAAA 60.037 40.741 7.28 0.00 42.66 1.52
4095 13655 3.764434 TGTTTAGGCACCTCAGACTCTAG 59.236 47.826 0.00 0.00 0.00 2.43
4096 13656 3.774734 TGTTTAGGCACCTCAGACTCTA 58.225 45.455 0.00 0.00 0.00 2.43
4097 13657 2.609747 TGTTTAGGCACCTCAGACTCT 58.390 47.619 0.00 0.00 0.00 3.24
4098 13658 3.330267 CTTGTTTAGGCACCTCAGACTC 58.670 50.000 0.00 0.00 0.00 3.36
4099 13659 2.551071 GCTTGTTTAGGCACCTCAGACT 60.551 50.000 0.00 0.00 0.00 3.24
4100 13660 1.807142 GCTTGTTTAGGCACCTCAGAC 59.193 52.381 0.00 0.00 0.00 3.51
4101 13661 1.419762 TGCTTGTTTAGGCACCTCAGA 59.580 47.619 0.00 0.00 33.23 3.27
4102 13662 1.896220 TGCTTGTTTAGGCACCTCAG 58.104 50.000 0.00 0.00 33.23 3.35
4103 13663 2.356665 TTGCTTGTTTAGGCACCTCA 57.643 45.000 0.00 0.00 38.23 3.86
4104 13664 2.604614 CGTTTGCTTGTTTAGGCACCTC 60.605 50.000 0.00 0.00 38.23 3.85
4105 13665 1.336755 CGTTTGCTTGTTTAGGCACCT 59.663 47.619 0.00 0.00 38.23 4.00
4106 13666 1.766069 CGTTTGCTTGTTTAGGCACC 58.234 50.000 0.00 0.00 38.23 5.01
4107 13667 1.128513 GCGTTTGCTTGTTTAGGCAC 58.871 50.000 0.00 0.00 38.23 5.01
4108 13668 0.317436 CGCGTTTGCTTGTTTAGGCA 60.317 50.000 0.00 0.00 39.65 4.75
4109 13669 1.001745 CCGCGTTTGCTTGTTTAGGC 61.002 55.000 4.92 0.00 39.65 3.93
4110 13670 1.001745 GCCGCGTTTGCTTGTTTAGG 61.002 55.000 4.92 0.00 39.65 2.69
4111 13671 0.040425 AGCCGCGTTTGCTTGTTTAG 60.040 50.000 4.92 0.00 39.65 1.85
4112 13672 0.317436 CAGCCGCGTTTGCTTGTTTA 60.317 50.000 4.92 0.00 36.81 2.01
4113 13673 1.588667 CAGCCGCGTTTGCTTGTTT 60.589 52.632 4.92 0.00 36.81 2.83
4114 13674 2.026014 CAGCCGCGTTTGCTTGTT 59.974 55.556 4.92 0.00 36.81 2.83
4115 13675 3.964875 CCAGCCGCGTTTGCTTGT 61.965 61.111 4.92 0.00 36.81 3.16
4127 13687 2.361610 TAGCTTTGCAGGCCAGCC 60.362 61.111 18.54 0.00 33.73 4.85
4128 13688 2.704808 GGTAGCTTTGCAGGCCAGC 61.705 63.158 14.22 14.22 0.00 4.85
4129 13689 0.682209 ATGGTAGCTTTGCAGGCCAG 60.682 55.000 5.01 0.00 31.99 4.85
4130 13690 0.966875 CATGGTAGCTTTGCAGGCCA 60.967 55.000 5.01 3.43 32.68 5.36
4131 13691 1.811860 CATGGTAGCTTTGCAGGCC 59.188 57.895 0.00 0.00 0.00 5.19
4132 13692 1.140375 GCATGGTAGCTTTGCAGGC 59.860 57.895 13.28 5.73 36.40 4.85
4133 13693 0.454600 CAGCATGGTAGCTTTGCAGG 59.545 55.000 18.25 9.26 43.70 4.85
4134 13694 1.171308 ACAGCATGGTAGCTTTGCAG 58.829 50.000 18.25 14.08 43.70 4.41
4135 13695 1.619654 AACAGCATGGTAGCTTTGCA 58.380 45.000 18.25 0.00 43.70 4.08
4136 13696 2.599659 GAAACAGCATGGTAGCTTTGC 58.400 47.619 11.05 11.05 43.70 3.68
4137 13697 2.855180 CGAAACAGCATGGTAGCTTTG 58.145 47.619 0.00 0.00 43.70 2.77
4138 13698 1.200020 GCGAAACAGCATGGTAGCTTT 59.800 47.619 0.00 0.00 43.70 3.51
4139 13699 0.804989 GCGAAACAGCATGGTAGCTT 59.195 50.000 0.00 0.00 43.70 3.74
4141 13701 1.060937 CGCGAAACAGCATGGTAGC 59.939 57.895 0.00 0.00 27.21 3.58
4142 13702 0.739462 TCCGCGAAACAGCATGGTAG 60.739 55.000 8.23 0.00 27.21 3.18
4143 13703 0.320858 TTCCGCGAAACAGCATGGTA 60.321 50.000 8.23 0.00 27.21 3.25
4144 13704 1.599518 TTCCGCGAAACAGCATGGT 60.600 52.632 8.23 0.00 38.54 3.55
4145 13705 1.154225 GTTCCGCGAAACAGCATGG 60.154 57.895 8.23 0.00 43.62 3.66
4146 13706 0.040514 TTGTTCCGCGAAACAGCATG 60.041 50.000 11.62 0.00 40.08 4.06
4147 13707 0.238289 CTTGTTCCGCGAAACAGCAT 59.762 50.000 11.62 0.00 40.08 3.79
4148 13708 1.646540 CTTGTTCCGCGAAACAGCA 59.353 52.632 11.62 0.00 40.08 4.41
4149 13709 1.725973 GCTTGTTCCGCGAAACAGC 60.726 57.895 11.62 13.27 40.08 4.40
4150 13710 0.028770 TTGCTTGTTCCGCGAAACAG 59.971 50.000 11.62 7.13 40.08 3.16
4151 13711 0.452184 TTTGCTTGTTCCGCGAAACA 59.548 45.000 6.87 6.87 37.37 2.83
4152 13712 1.766069 ATTTGCTTGTTCCGCGAAAC 58.234 45.000 8.23 3.56 34.67 2.78
4153 13713 3.560503 CTTATTTGCTTGTTCCGCGAAA 58.439 40.909 8.23 0.00 34.67 3.46
4154 13714 2.667171 GCTTATTTGCTTGTTCCGCGAA 60.667 45.455 8.23 0.00 35.41 4.70
4155 13715 1.135803 GCTTATTTGCTTGTTCCGCGA 60.136 47.619 8.23 0.00 0.00 5.87
4156 13716 1.259316 GCTTATTTGCTTGTTCCGCG 58.741 50.000 0.00 0.00 0.00 6.46
4157 13717 1.259316 CGCTTATTTGCTTGTTCCGC 58.741 50.000 0.00 0.00 0.00 5.54
4158 13718 1.259316 GCGCTTATTTGCTTGTTCCG 58.741 50.000 0.00 0.00 0.00 4.30
4159 13719 1.259316 CGCGCTTATTTGCTTGTTCC 58.741 50.000 5.56 0.00 0.00 3.62
4160 13720 0.635231 GCGCGCTTATTTGCTTGTTC 59.365 50.000 26.67 0.00 0.00 3.18
4161 13721 2.724403 GCGCGCTTATTTGCTTGTT 58.276 47.368 26.67 0.00 0.00 2.83
4162 13722 4.458164 GCGCGCTTATTTGCTTGT 57.542 50.000 26.67 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.