Multiple sequence alignment - TraesCS2D01G285000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G285000 chr2D 100.000 6473 0 0 1 6473 360492647 360486175 0.000000e+00 11954.0
1 TraesCS2D01G285000 chr2D 96.717 731 21 2 5743 6473 418068301 418069028 0.000000e+00 1214.0
2 TraesCS2D01G285000 chr2D 88.043 92 9 2 659 749 603594543 603594633 2.470000e-19 108.0
3 TraesCS2D01G285000 chr2B 95.635 4926 132 31 734 5629 429143863 429148735 0.000000e+00 7829.0
4 TraesCS2D01G285000 chr2B 89.796 49 3 2 5661 5709 154903586 154903632 1.950000e-05 62.1
5 TraesCS2D01G285000 chr2A 95.944 4832 141 30 733 5528 485794779 485789967 0.000000e+00 7786.0
6 TraesCS2D01G285000 chr2A 83.077 65 5 2 5676 5734 672300106 672300042 3.000000e-03 54.7
7 TraesCS2D01G285000 chr6A 96.730 734 24 0 5740 6473 574651165 574650432 0.000000e+00 1223.0
8 TraesCS2D01G285000 chr6A 96.717 731 23 1 5743 6473 222651779 222651050 0.000000e+00 1216.0
9 TraesCS2D01G285000 chr6A 92.000 75 5 1 657 731 170758040 170758113 3.190000e-18 104.0
10 TraesCS2D01G285000 chr6A 84.404 109 12 3 375 483 85564346 85564449 1.150000e-17 102.0
11 TraesCS2D01G285000 chr6A 85.455 55 2 5 5659 5709 423274260 423274312 1.200000e-02 52.8
12 TraesCS2D01G285000 chr4A 96.854 731 22 1 5743 6473 624981638 624980909 0.000000e+00 1221.0
13 TraesCS2D01G285000 chr7B 96.717 731 23 1 5743 6473 443304080 443304809 0.000000e+00 1216.0
14 TraesCS2D01G285000 chr5A 96.717 731 23 1 5743 6473 82313251 82312522 0.000000e+00 1216.0
15 TraesCS2D01G285000 chr5A 96.580 731 24 1 5743 6473 257362857 257362128 0.000000e+00 1210.0
16 TraesCS2D01G285000 chr5A 96.580 731 24 1 5743 6473 367140685 367139956 0.000000e+00 1210.0
17 TraesCS2D01G285000 chr6B 96.580 731 24 1 5743 6473 522330622 522329893 0.000000e+00 1210.0
18 TraesCS2D01G285000 chr6B 87.931 58 2 2 5682 5734 613615645 613615702 5.420000e-06 63.9
19 TraesCS2D01G285000 chr6B 87.931 58 2 2 5682 5734 613615703 613615646 5.420000e-06 63.9
20 TraesCS2D01G285000 chr3A 94.275 524 28 2 1 522 345563959 345563436 0.000000e+00 800.0
21 TraesCS2D01G285000 chr3A 95.935 246 8 2 278 522 41525844 41525600 1.310000e-106 398.0
22 TraesCS2D01G285000 chr3A 89.796 49 1 3 5663 5709 209641958 209641912 7.010000e-05 60.2
23 TraesCS2D01G285000 chr3A 86.538 52 4 3 5660 5709 93335569 93335519 3.000000e-03 54.7
24 TraesCS2D01G285000 chr7D 92.737 537 36 3 1 536 272299767 272300301 0.000000e+00 773.0
25 TraesCS2D01G285000 chr7D 87.640 89 6 5 670 757 196964858 196964774 1.490000e-16 99.0
26 TraesCS2D01G285000 chr4D 89.971 339 31 2 198 533 496287149 496287487 9.970000e-118 435.0
27 TraesCS2D01G285000 chr4D 97.143 70 1 1 667 735 112587600 112587669 4.100000e-22 117.0
28 TraesCS2D01G285000 chr4D 92.424 66 4 1 670 734 278297327 278297262 6.910000e-15 93.5
29 TraesCS2D01G285000 chr4D 87.273 55 5 1 5682 5734 13239067 13239013 1.950000e-05 62.1
30 TraesCS2D01G285000 chr4D 89.583 48 4 1 5662 5709 15801003 15801049 7.010000e-05 60.2
31 TraesCS2D01G285000 chr1D 93.827 81 3 2 657 736 468520970 468520891 3.170000e-23 121.0
32 TraesCS2D01G285000 chr1D 91.139 79 4 3 657 734 223409109 223409033 3.190000e-18 104.0
33 TraesCS2D01G285000 chr1D 89.873 79 7 1 657 734 90623812 90623734 4.130000e-17 100.0
34 TraesCS2D01G285000 chr1D 89.062 64 6 1 672 734 76792893 76792830 1.940000e-10 78.7
35 TraesCS2D01G285000 chr1B 97.101 69 1 1 670 737 447513095 447513163 1.470000e-21 115.0
36 TraesCS2D01G285000 chr1B 97.101 69 1 1 670 738 600485805 600485872 1.470000e-21 115.0
37 TraesCS2D01G285000 chr7A 97.059 68 0 2 671 736 648675284 648675351 5.300000e-21 113.0
38 TraesCS2D01G285000 chr7A 93.421 76 3 2 671 745 648669147 648669221 1.910000e-20 111.0
39 TraesCS2D01G285000 chr7A 93.421 76 3 2 671 745 648672203 648672277 1.910000e-20 111.0
40 TraesCS2D01G285000 chr7A 94.643 56 2 1 5680 5735 690800821 690800767 1.160000e-12 86.1
41 TraesCS2D01G285000 chr7A 100.000 30 0 0 5680 5709 454049087 454049058 1.000000e-03 56.5
42 TraesCS2D01G285000 chr5D 92.593 81 3 3 657 735 324703778 324703699 5.300000e-21 113.0
43 TraesCS2D01G285000 chr5D 92.208 77 3 3 659 733 429590255 429590180 8.880000e-19 106.0
44 TraesCS2D01G285000 chr1A 97.015 67 1 1 670 735 82663379 82663313 1.910000e-20 111.0
45 TraesCS2D01G285000 chr1A 95.522 67 1 2 670 734 586368657 586368591 8.880000e-19 106.0
46 TraesCS2D01G285000 chr6D 98.333 60 1 0 675 734 119191814 119191873 8.880000e-19 106.0
47 TraesCS2D01G285000 chr6D 91.139 79 6 1 657 735 175508257 175508334 8.880000e-19 106.0
48 TraesCS2D01G285000 chr6D 93.846 65 3 1 671 734 454303549 454303613 5.340000e-16 97.1
49 TraesCS2D01G285000 chr5B 92.000 50 0 3 5663 5709 472118295 472118247 4.190000e-07 67.6
50 TraesCS2D01G285000 chrUn 86.275 51 3 4 5661 5709 71058279 71058327 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G285000 chr2D 360486175 360492647 6472 True 11954 11954 100.000 1 6473 1 chr2D.!!$R1 6472
1 TraesCS2D01G285000 chr2D 418068301 418069028 727 False 1214 1214 96.717 5743 6473 1 chr2D.!!$F1 730
2 TraesCS2D01G285000 chr2B 429143863 429148735 4872 False 7829 7829 95.635 734 5629 1 chr2B.!!$F2 4895
3 TraesCS2D01G285000 chr2A 485789967 485794779 4812 True 7786 7786 95.944 733 5528 1 chr2A.!!$R1 4795
4 TraesCS2D01G285000 chr6A 574650432 574651165 733 True 1223 1223 96.730 5740 6473 1 chr6A.!!$R2 733
5 TraesCS2D01G285000 chr6A 222651050 222651779 729 True 1216 1216 96.717 5743 6473 1 chr6A.!!$R1 730
6 TraesCS2D01G285000 chr4A 624980909 624981638 729 True 1221 1221 96.854 5743 6473 1 chr4A.!!$R1 730
7 TraesCS2D01G285000 chr7B 443304080 443304809 729 False 1216 1216 96.717 5743 6473 1 chr7B.!!$F1 730
8 TraesCS2D01G285000 chr5A 82312522 82313251 729 True 1216 1216 96.717 5743 6473 1 chr5A.!!$R1 730
9 TraesCS2D01G285000 chr5A 257362128 257362857 729 True 1210 1210 96.580 5743 6473 1 chr5A.!!$R2 730
10 TraesCS2D01G285000 chr5A 367139956 367140685 729 True 1210 1210 96.580 5743 6473 1 chr5A.!!$R3 730
11 TraesCS2D01G285000 chr6B 522329893 522330622 729 True 1210 1210 96.580 5743 6473 1 chr6B.!!$R1 730
12 TraesCS2D01G285000 chr3A 345563436 345563959 523 True 800 800 94.275 1 522 1 chr3A.!!$R4 521
13 TraesCS2D01G285000 chr7D 272299767 272300301 534 False 773 773 92.737 1 536 1 chr7D.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 556 0.179142 GGCGTTTAGTCGAGGAGGTC 60.179 60.000 0.00 0.0 0.00 3.85 F
618 622 0.249657 GATCGAGAGGAGCGGCATTT 60.250 55.000 1.45 0.0 0.00 2.32 F
619 623 0.531532 ATCGAGAGGAGCGGCATTTG 60.532 55.000 1.45 0.0 0.00 2.32 F
2462 2518 0.107017 CATTCCCACGATTCAGGGCT 60.107 55.000 6.35 0.0 45.07 5.19 F
3717 3773 1.606531 GGTGAGATCCCTTGCTGCT 59.393 57.895 0.00 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 1982 0.808125 ACTAGACGCAGAGAGCACAG 59.192 55.000 0.0 0.0 46.13 3.66 R
2297 2353 1.340889 GGCACAAGGTTGAAATCAGCA 59.659 47.619 0.0 0.0 0.00 4.41 R
2565 2621 3.973657 ACAGCAGCAAATCAGAAAACTG 58.026 40.909 0.0 0.0 0.00 3.16 R
4125 4182 0.393808 TTGACAATCGCCTTAGCCCC 60.394 55.000 0.0 0.0 34.57 5.80 R
5678 5741 0.042131 TGGGACGGAGGGAGTATGTT 59.958 55.000 0.0 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 2.165030 GTCAAGATTTGGCAGGGATGTG 59.835 50.000 0.00 0.00 34.79 3.21
89 91 2.656646 CACTCTAGCACACCGCCA 59.343 61.111 0.00 0.00 44.04 5.69
273 276 1.014352 GTCGGCGATAATGGCAAAGT 58.986 50.000 14.79 0.00 0.00 2.66
281 284 0.250945 TAATGGCAAAGTGGTCGGCA 60.251 50.000 0.00 0.00 39.74 5.69
527 531 4.078516 GGAGGTCCGTGGGGTTCG 62.079 72.222 0.00 0.00 33.83 3.95
550 554 4.808649 GGCGTTTAGTCGAGGAGG 57.191 61.111 0.00 0.00 0.00 4.30
551 555 1.888736 GGCGTTTAGTCGAGGAGGT 59.111 57.895 0.00 0.00 0.00 3.85
552 556 0.179142 GGCGTTTAGTCGAGGAGGTC 60.179 60.000 0.00 0.00 0.00 3.85
553 557 0.810016 GCGTTTAGTCGAGGAGGTCT 59.190 55.000 0.00 0.00 0.00 3.85
554 558 1.467713 GCGTTTAGTCGAGGAGGTCTG 60.468 57.143 0.00 0.00 0.00 3.51
555 559 1.132643 CGTTTAGTCGAGGAGGTCTGG 59.867 57.143 0.00 0.00 0.00 3.86
556 560 1.135053 GTTTAGTCGAGGAGGTCTGGC 60.135 57.143 0.00 0.00 0.00 4.85
557 561 1.030488 TTAGTCGAGGAGGTCTGGCG 61.030 60.000 0.00 0.00 0.00 5.69
558 562 2.888464 TAGTCGAGGAGGTCTGGCGG 62.888 65.000 0.00 0.00 0.00 6.13
564 568 4.070552 GAGGTCTGGCGGCGTCTT 62.071 66.667 14.51 0.00 0.00 3.01
565 569 3.991536 GAGGTCTGGCGGCGTCTTC 62.992 68.421 14.51 2.68 0.00 2.87
566 570 4.070552 GGTCTGGCGGCGTCTTCT 62.071 66.667 14.51 0.00 0.00 2.85
567 571 2.507324 GTCTGGCGGCGTCTTCTC 60.507 66.667 14.51 0.00 0.00 2.87
568 572 4.116328 TCTGGCGGCGTCTTCTCG 62.116 66.667 14.51 0.00 0.00 4.04
571 575 4.856607 GGCGGCGTCTTCTCGGAG 62.857 72.222 9.37 0.00 0.00 4.63
572 576 3.812019 GCGGCGTCTTCTCGGAGA 61.812 66.667 9.37 2.97 0.00 3.71
601 605 3.148279 GCGTGTCCTCGAGGGGAT 61.148 66.667 30.80 0.00 37.73 3.85
602 606 3.121019 CGTGTCCTCGAGGGGATC 58.879 66.667 30.80 18.16 37.73 3.36
611 615 3.771978 GAGGGGATCGAGAGGAGC 58.228 66.667 0.00 0.00 0.00 4.70
612 616 2.203422 AGGGGATCGAGAGGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
613 617 3.299190 GGGGATCGAGAGGAGCGG 61.299 72.222 0.00 0.00 0.00 5.52
614 618 3.984749 GGGATCGAGAGGAGCGGC 61.985 72.222 0.00 0.00 0.00 6.53
615 619 3.219928 GGATCGAGAGGAGCGGCA 61.220 66.667 1.45 0.00 0.00 5.69
616 620 2.569354 GGATCGAGAGGAGCGGCAT 61.569 63.158 1.45 0.00 0.00 4.40
617 621 1.365633 GATCGAGAGGAGCGGCATT 59.634 57.895 1.45 0.00 0.00 3.56
618 622 0.249657 GATCGAGAGGAGCGGCATTT 60.250 55.000 1.45 0.00 0.00 2.32
619 623 0.531532 ATCGAGAGGAGCGGCATTTG 60.532 55.000 1.45 0.00 0.00 2.32
620 624 1.448540 CGAGAGGAGCGGCATTTGT 60.449 57.895 1.45 0.00 0.00 2.83
621 625 1.699656 CGAGAGGAGCGGCATTTGTG 61.700 60.000 1.45 0.00 0.00 3.33
622 626 1.986575 GAGAGGAGCGGCATTTGTGC 61.987 60.000 1.45 0.00 0.00 4.57
623 627 3.386867 GAGGAGCGGCATTTGTGCG 62.387 63.158 1.45 0.00 35.24 5.34
624 628 3.430862 GGAGCGGCATTTGTGCGA 61.431 61.111 1.45 0.00 35.24 5.10
625 629 2.099062 GAGCGGCATTTGTGCGAG 59.901 61.111 1.45 0.00 35.24 5.03
626 630 4.107051 AGCGGCATTTGTGCGAGC 62.107 61.111 1.45 10.16 38.66 5.03
628 632 3.434319 CGGCATTTGTGCGAGCCT 61.434 61.111 0.00 0.00 44.85 4.58
629 633 2.180017 GGCATTTGTGCGAGCCTG 59.820 61.111 0.00 0.00 43.70 4.85
630 634 2.505557 GCATTTGTGCGAGCCTGC 60.506 61.111 0.00 0.00 0.00 4.85
631 635 2.202388 CATTTGTGCGAGCCTGCG 60.202 61.111 0.00 0.00 37.81 5.18
632 636 3.434319 ATTTGTGCGAGCCTGCGG 61.434 61.111 0.00 0.00 37.81 5.69
640 644 4.660938 GAGCCTGCGGGGTGGTTT 62.661 66.667 23.83 0.00 44.22 3.27
641 645 4.218686 AGCCTGCGGGGTGGTTTT 62.219 61.111 17.39 0.00 42.37 2.43
642 646 3.230990 GCCTGCGGGGTGGTTTTT 61.231 61.111 15.02 0.00 37.43 1.94
657 661 2.023318 TTTTTGGGTGTACGTGCGG 58.977 52.632 0.00 0.00 0.00 5.69
658 662 1.445716 TTTTTGGGTGTACGTGCGGG 61.446 55.000 0.00 0.00 0.00 6.13
659 663 3.828694 TTTGGGTGTACGTGCGGGG 62.829 63.158 0.00 0.00 0.00 5.73
663 667 3.993584 GTGTACGTGCGGGGTGGA 61.994 66.667 0.00 0.00 0.00 4.02
664 668 3.687102 TGTACGTGCGGGGTGGAG 61.687 66.667 0.00 0.00 0.00 3.86
665 669 3.376078 GTACGTGCGGGGTGGAGA 61.376 66.667 0.00 0.00 0.00 3.71
666 670 2.601067 TACGTGCGGGGTGGAGAA 60.601 61.111 0.00 0.00 0.00 2.87
667 671 2.642254 TACGTGCGGGGTGGAGAAG 61.642 63.158 0.00 0.00 0.00 2.85
668 672 4.760047 CGTGCGGGGTGGAGAAGG 62.760 72.222 0.00 0.00 0.00 3.46
669 673 3.319198 GTGCGGGGTGGAGAAGGA 61.319 66.667 0.00 0.00 0.00 3.36
670 674 3.003173 TGCGGGGTGGAGAAGGAG 61.003 66.667 0.00 0.00 0.00 3.69
671 675 2.683933 GCGGGGTGGAGAAGGAGA 60.684 66.667 0.00 0.00 0.00 3.71
672 676 3.020237 GCGGGGTGGAGAAGGAGAC 62.020 68.421 0.00 0.00 0.00 3.36
673 677 2.711922 CGGGGTGGAGAAGGAGACG 61.712 68.421 0.00 0.00 0.00 4.18
674 678 1.305046 GGGGTGGAGAAGGAGACGA 60.305 63.158 0.00 0.00 0.00 4.20
675 679 0.903454 GGGGTGGAGAAGGAGACGAA 60.903 60.000 0.00 0.00 0.00 3.85
676 680 0.974383 GGGTGGAGAAGGAGACGAAA 59.026 55.000 0.00 0.00 0.00 3.46
677 681 1.346722 GGGTGGAGAAGGAGACGAAAA 59.653 52.381 0.00 0.00 0.00 2.29
678 682 2.224450 GGGTGGAGAAGGAGACGAAAAA 60.224 50.000 0.00 0.00 0.00 1.94
705 709 3.329929 ACGAAAGTGGTGGGACTATTC 57.670 47.619 0.00 0.00 46.97 1.75
706 710 2.635915 ACGAAAGTGGTGGGACTATTCA 59.364 45.455 0.00 0.00 46.97 2.57
707 711 3.071892 ACGAAAGTGGTGGGACTATTCAA 59.928 43.478 0.00 0.00 46.97 2.69
708 712 3.435671 CGAAAGTGGTGGGACTATTCAAC 59.564 47.826 0.00 0.00 0.00 3.18
709 713 3.434940 AAGTGGTGGGACTATTCAACC 57.565 47.619 0.00 0.00 32.80 3.77
710 714 2.344592 AGTGGTGGGACTATTCAACCA 58.655 47.619 3.57 3.57 37.57 3.67
711 715 2.714250 AGTGGTGGGACTATTCAACCAA 59.286 45.455 8.03 0.00 40.12 3.67
712 716 2.817844 GTGGTGGGACTATTCAACCAAC 59.182 50.000 8.03 0.00 40.12 3.77
713 717 2.714250 TGGTGGGACTATTCAACCAACT 59.286 45.455 0.00 0.00 41.27 3.16
714 718 3.139397 TGGTGGGACTATTCAACCAACTT 59.861 43.478 0.00 0.00 41.27 2.66
715 719 3.506067 GGTGGGACTATTCAACCAACTTG 59.494 47.826 0.00 0.00 37.71 3.16
716 720 4.142038 GTGGGACTATTCAACCAACTTGT 58.858 43.478 0.00 0.00 34.26 3.16
717 721 4.215613 GTGGGACTATTCAACCAACTTGTC 59.784 45.833 0.00 0.00 34.26 3.18
718 722 3.756963 GGGACTATTCAACCAACTTGTCC 59.243 47.826 0.00 0.00 41.19 4.02
719 723 4.394729 GGACTATTCAACCAACTTGTCCA 58.605 43.478 0.00 0.00 41.45 4.02
720 724 5.010282 GGACTATTCAACCAACTTGTCCAT 58.990 41.667 0.00 0.00 41.45 3.41
721 725 5.476945 GGACTATTCAACCAACTTGTCCATT 59.523 40.000 0.00 0.00 41.45 3.16
722 726 6.657541 GGACTATTCAACCAACTTGTCCATTA 59.342 38.462 0.00 0.00 41.45 1.90
723 727 7.148239 GGACTATTCAACCAACTTGTCCATTAG 60.148 40.741 0.00 0.00 41.45 1.73
724 728 5.982890 ATTCAACCAACTTGTCCATTAGG 57.017 39.130 0.00 0.00 0.00 2.69
725 729 4.715534 TCAACCAACTTGTCCATTAGGA 57.284 40.909 0.00 0.00 43.21 2.94
726 730 4.651778 TCAACCAACTTGTCCATTAGGAG 58.348 43.478 0.00 0.00 46.92 3.69
727 731 4.104102 TCAACCAACTTGTCCATTAGGAGT 59.896 41.667 0.00 0.00 46.92 3.85
728 732 5.308497 TCAACCAACTTGTCCATTAGGAGTA 59.692 40.000 0.00 0.00 46.92 2.59
729 733 5.422214 ACCAACTTGTCCATTAGGAGTAG 57.578 43.478 0.00 0.00 46.92 2.57
730 734 5.091552 ACCAACTTGTCCATTAGGAGTAGA 58.908 41.667 0.00 0.00 46.92 2.59
731 735 5.187967 ACCAACTTGTCCATTAGGAGTAGAG 59.812 44.000 0.00 0.00 46.92 2.43
735 739 8.356657 CAACTTGTCCATTAGGAGTAGAGATAG 58.643 40.741 0.00 0.00 46.92 2.08
743 747 9.967451 CCATTAGGAGTAGAGATAGTTCTCATA 57.033 37.037 5.84 0.00 43.66 2.15
765 769 9.725019 TCATATTTTACGATTCTCTTATGCCAT 57.275 29.630 0.00 0.00 0.00 4.40
848 859 3.127425 ACAAACTTGCTCTACCTCCAC 57.873 47.619 0.00 0.00 0.00 4.02
868 879 8.122952 CCTCCACGTTTATTTATCAAGTGATTC 58.877 37.037 0.00 0.00 36.05 2.52
880 891 9.850198 TTTATCAAGTGATTCATACCATCATCA 57.150 29.630 0.00 0.00 36.05 3.07
881 892 7.981102 ATCAAGTGATTCATACCATCATCAG 57.019 36.000 0.00 0.00 33.22 2.90
888 899 6.206048 TGATTCATACCATCATCAGCATCAAC 59.794 38.462 0.00 0.00 0.00 3.18
895 906 4.628766 CCATCATCAGCATCAACTATACCG 59.371 45.833 0.00 0.00 0.00 4.02
896 907 4.937201 TCATCAGCATCAACTATACCGT 57.063 40.909 0.00 0.00 0.00 4.83
897 908 4.871513 TCATCAGCATCAACTATACCGTC 58.128 43.478 0.00 0.00 0.00 4.79
903 916 7.324935 TCAGCATCAACTATACCGTCTAAAAA 58.675 34.615 0.00 0.00 0.00 1.94
941 957 1.219664 CCTTGGTGGCCAATGCATG 59.780 57.895 7.24 0.00 43.07 4.06
1023 1040 5.160607 TCGTACCTCACCTTTTGATCATT 57.839 39.130 0.00 0.00 32.17 2.57
1024 1041 4.935205 TCGTACCTCACCTTTTGATCATTG 59.065 41.667 0.00 0.00 32.17 2.82
1143 1168 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
1144 1169 3.378512 AGAGAGAGAGAGAGAGAGAGCA 58.621 50.000 0.00 0.00 0.00 4.26
1145 1170 3.972638 AGAGAGAGAGAGAGAGAGAGCAT 59.027 47.826 0.00 0.00 0.00 3.79
1146 1171 4.411540 AGAGAGAGAGAGAGAGAGAGCATT 59.588 45.833 0.00 0.00 0.00 3.56
1147 1172 4.712476 AGAGAGAGAGAGAGAGAGCATTC 58.288 47.826 0.00 0.00 0.00 2.67
1148 1173 3.817647 GAGAGAGAGAGAGAGAGCATTCC 59.182 52.174 0.00 0.00 0.00 3.01
1150 1175 1.963515 GAGAGAGAGAGAGCATTCCCC 59.036 57.143 0.00 0.00 0.00 4.81
1152 1177 1.963515 GAGAGAGAGAGCATTCCCCTC 59.036 57.143 0.00 0.00 0.00 4.30
1154 1179 0.641601 AGAGAGAGCATTCCCCTCCT 59.358 55.000 0.00 0.00 0.00 3.69
1155 1180 0.758123 GAGAGAGCATTCCCCTCCTG 59.242 60.000 0.00 0.00 0.00 3.86
1156 1181 0.693767 AGAGAGCATTCCCCTCCTGG 60.694 60.000 0.00 0.00 0.00 4.45
1449 1474 1.070786 TTTGGTGCGGAGTCTGGAC 59.929 57.895 14.87 14.87 0.00 4.02
1454 1479 1.681327 TGCGGAGTCTGGACTACCC 60.681 63.158 7.32 3.46 42.66 3.69
1513 1538 1.208052 TGGATCTGAGCTGTTGGTAGC 59.792 52.381 0.00 0.00 44.01 3.58
1728 1754 6.740401 GCGTGTTCTAAATAGGGTATGGATGA 60.740 42.308 0.00 0.00 0.00 2.92
1837 1865 0.617413 CAGATGAGGTGAACCAGGCT 59.383 55.000 1.62 0.00 38.89 4.58
1926 1982 2.421424 CTGTCCAAGCCAGCATTAGTTC 59.579 50.000 0.00 0.00 0.00 3.01
1943 1999 1.200252 GTTCTGTGCTCTCTGCGTCTA 59.800 52.381 0.00 0.00 46.63 2.59
1981 2037 5.555069 GCAGCTTCTTTTTGTTGATTTCGTG 60.555 40.000 0.00 0.00 0.00 4.35
2462 2518 0.107017 CATTCCCACGATTCAGGGCT 60.107 55.000 6.35 0.00 45.07 5.19
2565 2621 3.641437 TGCAGTTTGTTAAGGCATCAC 57.359 42.857 0.00 0.00 0.00 3.06
2595 2651 4.136796 TGATTTGCTGCTGTAGTTTCTGT 58.863 39.130 0.00 0.00 0.00 3.41
2614 2670 6.966534 TCTGTGTGCATCTAGATCTTATGA 57.033 37.500 17.54 8.13 0.00 2.15
2688 2744 4.657436 TTAGCTACTAGCCTTCTTGCTC 57.343 45.455 4.32 0.00 43.77 4.26
2718 2774 5.302360 TGCCAGTTATTACTCGTTTGAAGT 58.698 37.500 0.00 0.00 30.26 3.01
2835 2891 5.349817 CGAATTGCATGAGTACTCTTTCAGT 59.650 40.000 23.01 11.69 39.41 3.41
3420 3476 5.805728 TCTGTGTCAGTAGATACACTCTCA 58.194 41.667 7.09 0.00 44.99 3.27
3717 3773 1.606531 GGTGAGATCCCTTGCTGCT 59.393 57.895 0.00 0.00 0.00 4.24
3782 3839 3.076032 ACAGGGTTTGAGCCTTTATCCTT 59.924 43.478 0.00 0.00 45.25 3.36
3790 3847 5.499004 TGAGCCTTTATCCTTTACACTGT 57.501 39.130 0.00 0.00 0.00 3.55
3936 3993 5.437060 GAGGGACTTGTTGCAATATCCTTA 58.563 41.667 13.56 0.00 41.55 2.69
4125 4182 3.848019 GTGCTATTGTTCGTGAATGCAAG 59.152 43.478 0.00 0.00 0.00 4.01
4615 4672 7.556635 GGTATCTCCTTGCTGTAAAAGGTAATT 59.443 37.037 2.35 0.00 43.97 1.40
4699 4756 7.818930 TCTTGAAGTTGCATTCTTTTGTTTCTT 59.181 29.630 6.20 0.00 0.00 2.52
4730 4787 9.664332 GCTCATATGATCCTCTAAATATGTTGT 57.336 33.333 5.72 0.00 35.45 3.32
4732 4789 9.440773 TCATATGATCCTCTAAATATGTTGTGC 57.559 33.333 0.00 0.00 35.45 4.57
4733 4790 9.223099 CATATGATCCTCTAAATATGTTGTGCA 57.777 33.333 0.00 0.00 31.32 4.57
4830 4887 6.254281 ACCAACTTTATTCGTCCAAATCTG 57.746 37.500 0.00 0.00 0.00 2.90
5188 5247 4.141505 CCAACCAACCAATCCTTCCTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
5239 5298 3.817148 GCCATTTGCTTTTGACATTGG 57.183 42.857 0.00 0.00 36.87 3.16
5281 5340 0.658536 GTCGCTGTTGCTCTTGTTGC 60.659 55.000 0.00 0.00 36.97 4.17
5312 5371 2.804697 TGAATCTGACCGAAACGACA 57.195 45.000 0.00 0.00 0.00 4.35
5324 5383 2.595386 GAAACGACAATGGCCAATGAC 58.405 47.619 27.62 19.77 0.00 3.06
5367 5426 3.089573 GCAGAGGCTGGAATAATTTGC 57.910 47.619 0.00 0.00 36.96 3.68
5450 5509 1.003839 ATGTTGTGTGCGTCCGGAT 60.004 52.632 7.81 0.00 0.00 4.18
5485 5546 3.476552 CTGTGCCCTTGTTTTCTCTGTA 58.523 45.455 0.00 0.00 0.00 2.74
5528 5589 3.444029 AGCCACATCTTGCCCTTTTATT 58.556 40.909 0.00 0.00 0.00 1.40
5529 5590 4.609301 AGCCACATCTTGCCCTTTTATTA 58.391 39.130 0.00 0.00 0.00 0.98
5530 5591 5.211201 AGCCACATCTTGCCCTTTTATTAT 58.789 37.500 0.00 0.00 0.00 1.28
5549 5610 6.885952 ATTATGTGTGCTCTATACGACTCT 57.114 37.500 0.00 0.00 0.00 3.24
5552 5613 2.033550 GTGTGCTCTATACGACTCTGGG 59.966 54.545 0.00 0.00 0.00 4.45
5556 5617 1.082038 CTATACGACTCTGGGCGCG 60.082 63.158 0.00 0.00 0.00 6.86
5581 5644 2.647297 GCAGTGCCTGGACAAAGC 59.353 61.111 2.85 0.00 31.21 3.51
5582 5645 1.900498 GCAGTGCCTGGACAAAGCT 60.900 57.895 2.85 0.00 31.21 3.74
5594 5657 3.243501 TGGACAAAGCTCATTTTGCTCAC 60.244 43.478 0.00 0.00 40.80 3.51
5629 5692 2.846206 ACCCCATATGGACGCATCATAT 59.154 45.455 24.00 0.00 38.06 1.78
5630 5693 3.266772 ACCCCATATGGACGCATCATATT 59.733 43.478 24.00 0.00 36.12 1.28
5631 5694 4.263905 ACCCCATATGGACGCATCATATTT 60.264 41.667 24.00 0.00 36.12 1.40
5632 5695 4.706476 CCCCATATGGACGCATCATATTTT 59.294 41.667 24.00 0.00 36.12 1.82
5633 5696 5.885352 CCCCATATGGACGCATCATATTTTA 59.115 40.000 24.00 0.00 36.12 1.52
5634 5697 6.547141 CCCCATATGGACGCATCATATTTTAT 59.453 38.462 24.00 0.00 36.12 1.40
5635 5698 7.719193 CCCCATATGGACGCATCATATTTTATA 59.281 37.037 24.00 0.00 36.12 0.98
5636 5699 8.559536 CCCATATGGACGCATCATATTTTATAC 58.440 37.037 24.00 0.00 36.12 1.47
5637 5700 9.108284 CCATATGGACGCATCATATTTTATACA 57.892 33.333 17.49 0.00 36.12 2.29
5641 5704 8.214721 TGGACGCATCATATTTTATACAAACA 57.785 30.769 0.00 0.00 0.00 2.83
5642 5705 8.126074 TGGACGCATCATATTTTATACAAACAC 58.874 33.333 0.00 0.00 0.00 3.32
5643 5706 8.126074 GGACGCATCATATTTTATACAAACACA 58.874 33.333 0.00 0.00 0.00 3.72
5644 5707 9.663904 GACGCATCATATTTTATACAAACACAT 57.336 29.630 0.00 0.00 0.00 3.21
5645 5708 9.449550 ACGCATCATATTTTATACAAACACATG 57.550 29.630 0.00 0.00 0.00 3.21
5646 5709 8.419435 CGCATCATATTTTATACAAACACATGC 58.581 33.333 0.00 0.00 0.00 4.06
5647 5710 9.247126 GCATCATATTTTATACAAACACATGCA 57.753 29.630 0.00 0.00 0.00 3.96
5650 5713 9.747293 TCATATTTTATACAAACACATGCATGG 57.253 29.630 29.41 20.05 0.00 3.66
5651 5714 9.531942 CATATTTTATACAAACACATGCATGGT 57.468 29.630 29.41 20.67 0.00 3.55
5653 5716 8.925161 ATTTTATACAAACACATGCATGGTAC 57.075 30.769 29.41 0.00 0.00 3.34
5654 5717 2.987413 ACAAACACATGCATGGTACG 57.013 45.000 29.41 18.72 0.00 3.67
5655 5718 2.226330 ACAAACACATGCATGGTACGT 58.774 42.857 29.41 19.25 0.00 3.57
5656 5719 2.621055 ACAAACACATGCATGGTACGTT 59.379 40.909 29.41 21.64 0.00 3.99
5657 5720 2.979151 CAAACACATGCATGGTACGTTG 59.021 45.455 29.41 19.25 0.00 4.10
5658 5721 1.164411 ACACATGCATGGTACGTTGG 58.836 50.000 29.41 10.95 0.00 3.77
5659 5722 1.164411 CACATGCATGGTACGTTGGT 58.836 50.000 29.41 3.16 0.00 3.67
5660 5723 1.130373 CACATGCATGGTACGTTGGTC 59.870 52.381 29.41 0.00 0.00 4.02
5661 5724 1.271108 ACATGCATGGTACGTTGGTCA 60.271 47.619 29.41 0.00 0.00 4.02
5662 5725 2.016318 CATGCATGGTACGTTGGTCAT 58.984 47.619 19.40 0.00 0.00 3.06
5663 5726 3.202097 CATGCATGGTACGTTGGTCATA 58.798 45.455 19.40 0.00 0.00 2.15
5664 5727 2.623535 TGCATGGTACGTTGGTCATAC 58.376 47.619 0.00 0.00 0.00 2.39
5665 5728 1.937899 GCATGGTACGTTGGTCATACC 59.062 52.381 0.00 0.00 39.12 2.73
5680 5743 7.801716 TGGTCATACCAGATAGCATAAAAAC 57.198 36.000 0.00 0.00 44.79 2.43
5681 5744 7.342581 TGGTCATACCAGATAGCATAAAAACA 58.657 34.615 0.00 0.00 44.79 2.83
5682 5745 7.998383 TGGTCATACCAGATAGCATAAAAACAT 59.002 33.333 0.00 0.00 44.79 2.71
5683 5746 9.502091 GGTCATACCAGATAGCATAAAAACATA 57.498 33.333 0.00 0.00 38.42 2.29
5687 5750 9.726438 ATACCAGATAGCATAAAAACATACTCC 57.274 33.333 0.00 0.00 0.00 3.85
5688 5751 6.998673 ACCAGATAGCATAAAAACATACTCCC 59.001 38.462 0.00 0.00 0.00 4.30
5689 5752 7.147302 ACCAGATAGCATAAAAACATACTCCCT 60.147 37.037 0.00 0.00 0.00 4.20
5690 5753 7.389053 CCAGATAGCATAAAAACATACTCCCTC 59.611 40.741 0.00 0.00 0.00 4.30
5691 5754 7.389053 CAGATAGCATAAAAACATACTCCCTCC 59.611 40.741 0.00 0.00 0.00 4.30
5692 5755 4.451900 AGCATAAAAACATACTCCCTCCG 58.548 43.478 0.00 0.00 0.00 4.63
5693 5756 4.080526 AGCATAAAAACATACTCCCTCCGT 60.081 41.667 0.00 0.00 0.00 4.69
5694 5757 4.272748 GCATAAAAACATACTCCCTCCGTC 59.727 45.833 0.00 0.00 0.00 4.79
5695 5758 3.345508 AAAAACATACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
5696 5759 1.201424 AAACATACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
5697 5760 0.042131 AACATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
5698 5761 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
5699 5762 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
5700 5763 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
5701 5764 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5702 5765 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
5703 5766 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
5704 5767 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
5705 5768 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
5706 5769 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
5707 5770 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
5708 5771 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
5709 5772 2.147958 TCCGTCCCAAAATTCTTGTCG 58.852 47.619 0.00 0.00 0.00 4.35
5710 5773 2.147958 CCGTCCCAAAATTCTTGTCGA 58.852 47.619 0.00 0.00 0.00 4.20
5711 5774 2.747446 CCGTCCCAAAATTCTTGTCGAT 59.253 45.455 0.00 0.00 0.00 3.59
5712 5775 3.426159 CCGTCCCAAAATTCTTGTCGATG 60.426 47.826 0.00 0.00 0.00 3.84
5713 5776 3.435327 CGTCCCAAAATTCTTGTCGATGA 59.565 43.478 0.00 0.00 0.00 2.92
5714 5777 4.083537 CGTCCCAAAATTCTTGTCGATGAA 60.084 41.667 0.00 0.00 0.00 2.57
5715 5778 5.391950 CGTCCCAAAATTCTTGTCGATGAAT 60.392 40.000 0.00 0.00 34.75 2.57
5716 5779 6.389906 GTCCCAAAATTCTTGTCGATGAATT 58.610 36.000 14.15 14.15 42.52 2.17
5722 5785 6.588719 AATTCTTGTCGATGAATTTTGGGA 57.411 33.333 14.15 0.00 39.10 4.37
5723 5786 5.371115 TTCTTGTCGATGAATTTTGGGAC 57.629 39.130 0.00 0.00 0.00 4.46
5724 5787 4.393834 TCTTGTCGATGAATTTTGGGACA 58.606 39.130 0.00 0.00 33.05 4.02
5725 5788 4.455533 TCTTGTCGATGAATTTTGGGACAG 59.544 41.667 0.00 0.00 42.39 3.51
5726 5789 4.014569 TGTCGATGAATTTTGGGACAGA 57.985 40.909 0.00 0.00 42.39 3.41
5727 5790 4.002982 TGTCGATGAATTTTGGGACAGAG 58.997 43.478 0.00 0.00 42.39 3.35
5728 5791 3.375299 GTCGATGAATTTTGGGACAGAGG 59.625 47.826 0.00 0.00 42.39 3.69
5729 5792 2.684881 CGATGAATTTTGGGACAGAGGG 59.315 50.000 0.00 0.00 42.39 4.30
5730 5793 3.622206 CGATGAATTTTGGGACAGAGGGA 60.622 47.826 0.00 0.00 42.39 4.20
5731 5794 3.439857 TGAATTTTGGGACAGAGGGAG 57.560 47.619 0.00 0.00 42.39 4.30
5732 5795 2.716424 TGAATTTTGGGACAGAGGGAGT 59.284 45.455 0.00 0.00 42.39 3.85
5733 5796 3.913799 TGAATTTTGGGACAGAGGGAGTA 59.086 43.478 0.00 0.00 42.39 2.59
5734 5797 4.262617 GAATTTTGGGACAGAGGGAGTAC 58.737 47.826 0.00 0.00 42.39 2.73
5735 5798 1.652947 TTTGGGACAGAGGGAGTACC 58.347 55.000 0.00 0.00 42.39 3.34
5737 5800 0.490017 TGGGACAGAGGGAGTACCAA 59.510 55.000 0.00 0.00 46.79 3.67
5738 5801 1.132657 TGGGACAGAGGGAGTACCAAA 60.133 52.381 0.00 0.00 46.79 3.28
5739 5802 2.197465 GGGACAGAGGGAGTACCAAAT 58.803 52.381 0.00 0.00 43.89 2.32
5740 5803 2.576648 GGGACAGAGGGAGTACCAAATT 59.423 50.000 0.00 0.00 43.89 1.82
5741 5804 3.610911 GGACAGAGGGAGTACCAAATTG 58.389 50.000 0.00 0.00 43.89 2.32
5742 5805 3.010420 GACAGAGGGAGTACCAAATTGC 58.990 50.000 0.00 0.00 43.89 3.56
5743 5806 2.290960 ACAGAGGGAGTACCAAATTGCC 60.291 50.000 0.00 0.00 43.89 4.52
5744 5807 1.065418 AGAGGGAGTACCAAATTGCCG 60.065 52.381 0.00 0.00 43.89 5.69
5745 5808 0.679960 AGGGAGTACCAAATTGCCGC 60.680 55.000 0.00 0.00 43.89 6.53
5837 5900 3.066203 CCAACGTAAAAACTCAGCCACTT 59.934 43.478 0.00 0.00 0.00 3.16
5969 6032 1.142314 GGTGGTGCGCCGTATCTTA 59.858 57.895 12.58 0.00 37.67 2.10
5979 6042 3.490419 GCGCCGTATCTTAATCCGGATAT 60.490 47.826 19.48 10.12 43.01 1.63
6019 6082 1.591863 GGGTCGTCGCATCCTTAGC 60.592 63.158 0.00 0.00 0.00 3.09
6152 6217 1.823610 GTAGCTGGAACGTAGGGTCTT 59.176 52.381 0.00 0.00 0.00 3.01
6234 6299 2.035321 GCGTCCAAGAAACCAAATGGAA 59.965 45.455 6.42 0.00 43.21 3.53
6315 6380 1.406898 TGCAAACAGAAATGGCGTTGA 59.593 42.857 0.00 0.00 0.00 3.18
6388 6453 1.202770 GGGGAACGGATTATCCTGGTG 60.203 57.143 9.78 0.00 35.95 4.17
6459 6524 1.740025 GCAAGTAGGCCACAATGAGAC 59.260 52.381 5.01 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 4.083862 GAGAGGTGGCGGTGTCCC 62.084 72.222 0.00 0.00 0.00 4.46
89 91 1.348064 TGACAACAGGAACGGGATCT 58.652 50.000 0.00 0.00 0.00 2.75
273 276 1.040646 GATGATCTAGGTGCCGACCA 58.959 55.000 0.00 0.00 45.98 4.02
281 284 4.418526 TCTCCCTGAGAAGATGATCTAGGT 59.581 45.833 7.91 0.00 35.59 3.08
422 426 4.148825 GGTGCCGCCGATCTCAGT 62.149 66.667 0.00 0.00 0.00 3.41
536 540 1.135053 GCCAGACCTCCTCGACTAAAC 60.135 57.143 0.00 0.00 0.00 2.01
537 541 1.183549 GCCAGACCTCCTCGACTAAA 58.816 55.000 0.00 0.00 0.00 1.85
538 542 1.030488 CGCCAGACCTCCTCGACTAA 61.030 60.000 0.00 0.00 0.00 2.24
539 543 1.451567 CGCCAGACCTCCTCGACTA 60.452 63.158 0.00 0.00 0.00 2.59
540 544 2.752238 CGCCAGACCTCCTCGACT 60.752 66.667 0.00 0.00 0.00 4.18
541 545 3.827898 CCGCCAGACCTCCTCGAC 61.828 72.222 0.00 0.00 0.00 4.20
547 551 3.991536 GAAGACGCCGCCAGACCTC 62.992 68.421 0.00 0.00 0.00 3.85
548 552 4.070552 GAAGACGCCGCCAGACCT 62.071 66.667 0.00 0.00 0.00 3.85
549 553 3.991536 GAGAAGACGCCGCCAGACC 62.992 68.421 0.00 0.00 0.00 3.85
550 554 2.507324 GAGAAGACGCCGCCAGAC 60.507 66.667 0.00 0.00 0.00 3.51
551 555 4.116328 CGAGAAGACGCCGCCAGA 62.116 66.667 0.00 0.00 0.00 3.86
554 558 4.856607 CTCCGAGAAGACGCCGCC 62.857 72.222 0.00 0.00 0.00 6.13
555 559 3.743091 CTCTCCGAGAAGACGCCGC 62.743 68.421 0.00 0.00 0.00 6.53
556 560 2.405594 CTCTCCGAGAAGACGCCG 59.594 66.667 0.00 0.00 0.00 6.46
557 561 1.749638 TCCTCTCCGAGAAGACGCC 60.750 63.158 0.00 0.00 0.00 5.68
558 562 1.430228 GTCCTCTCCGAGAAGACGC 59.570 63.158 10.69 0.00 0.00 5.19
559 563 1.707239 CCGTCCTCTCCGAGAAGACG 61.707 65.000 30.33 30.33 40.92 4.18
560 564 1.995646 GCCGTCCTCTCCGAGAAGAC 61.996 65.000 14.83 14.83 0.00 3.01
561 565 1.749638 GCCGTCCTCTCCGAGAAGA 60.750 63.158 0.00 0.00 0.00 2.87
562 566 2.802106 GCCGTCCTCTCCGAGAAG 59.198 66.667 0.00 0.00 0.00 2.85
563 567 3.132139 CGCCGTCCTCTCCGAGAA 61.132 66.667 0.00 0.00 0.00 2.87
584 588 3.140225 GATCCCCTCGAGGACACGC 62.140 68.421 33.39 13.62 39.24 5.34
585 589 3.121019 GATCCCCTCGAGGACACG 58.879 66.667 33.39 15.60 39.24 4.49
594 598 2.265182 CGCTCCTCTCGATCCCCTC 61.265 68.421 0.00 0.00 0.00 4.30
595 599 2.203422 CGCTCCTCTCGATCCCCT 60.203 66.667 0.00 0.00 0.00 4.79
596 600 3.299190 CCGCTCCTCTCGATCCCC 61.299 72.222 0.00 0.00 0.00 4.81
597 601 3.984749 GCCGCTCCTCTCGATCCC 61.985 72.222 0.00 0.00 0.00 3.85
598 602 2.093537 AATGCCGCTCCTCTCGATCC 62.094 60.000 0.00 0.00 0.00 3.36
599 603 0.249657 AAATGCCGCTCCTCTCGATC 60.250 55.000 0.00 0.00 0.00 3.69
600 604 0.531532 CAAATGCCGCTCCTCTCGAT 60.532 55.000 0.00 0.00 0.00 3.59
601 605 1.153568 CAAATGCCGCTCCTCTCGA 60.154 57.895 0.00 0.00 0.00 4.04
602 606 1.448540 ACAAATGCCGCTCCTCTCG 60.449 57.895 0.00 0.00 0.00 4.04
603 607 1.986575 GCACAAATGCCGCTCCTCTC 61.987 60.000 0.00 0.00 46.97 3.20
604 608 2.042831 GCACAAATGCCGCTCCTCT 61.043 57.895 0.00 0.00 46.97 3.69
605 609 2.486966 GCACAAATGCCGCTCCTC 59.513 61.111 0.00 0.00 46.97 3.71
614 618 2.202388 CGCAGGCTCGCACAAATG 60.202 61.111 9.10 0.00 0.00 2.32
615 619 3.434319 CCGCAGGCTCGCACAAAT 61.434 61.111 9.10 0.00 46.14 2.32
639 643 1.445716 CCCGCACGTACACCCAAAAA 61.446 55.000 0.00 0.00 0.00 1.94
640 644 1.892862 CCCGCACGTACACCCAAAA 60.893 57.895 0.00 0.00 0.00 2.44
641 645 2.280933 CCCGCACGTACACCCAAA 60.281 61.111 0.00 0.00 0.00 3.28
642 646 4.317444 CCCCGCACGTACACCCAA 62.317 66.667 0.00 0.00 0.00 4.12
646 650 3.927163 CTCCACCCCGCACGTACAC 62.927 68.421 0.00 0.00 0.00 2.90
647 651 3.687102 CTCCACCCCGCACGTACA 61.687 66.667 0.00 0.00 0.00 2.90
648 652 2.830704 CTTCTCCACCCCGCACGTAC 62.831 65.000 0.00 0.00 0.00 3.67
649 653 2.601067 TTCTCCACCCCGCACGTA 60.601 61.111 0.00 0.00 0.00 3.57
650 654 4.003788 CTTCTCCACCCCGCACGT 62.004 66.667 0.00 0.00 0.00 4.49
651 655 4.760047 CCTTCTCCACCCCGCACG 62.760 72.222 0.00 0.00 0.00 5.34
652 656 3.316573 CTCCTTCTCCACCCCGCAC 62.317 68.421 0.00 0.00 0.00 5.34
653 657 3.003173 CTCCTTCTCCACCCCGCA 61.003 66.667 0.00 0.00 0.00 5.69
654 658 2.683933 TCTCCTTCTCCACCCCGC 60.684 66.667 0.00 0.00 0.00 6.13
655 659 2.711922 CGTCTCCTTCTCCACCCCG 61.712 68.421 0.00 0.00 0.00 5.73
656 660 0.903454 TTCGTCTCCTTCTCCACCCC 60.903 60.000 0.00 0.00 0.00 4.95
657 661 0.974383 TTTCGTCTCCTTCTCCACCC 59.026 55.000 0.00 0.00 0.00 4.61
658 662 2.833631 TTTTCGTCTCCTTCTCCACC 57.166 50.000 0.00 0.00 0.00 4.61
677 681 2.425668 CCCACCACTTTCGTCTGTTTTT 59.574 45.455 0.00 0.00 0.00 1.94
678 682 2.021457 CCCACCACTTTCGTCTGTTTT 58.979 47.619 0.00 0.00 0.00 2.43
679 683 1.210967 TCCCACCACTTTCGTCTGTTT 59.789 47.619 0.00 0.00 0.00 2.83
680 684 0.834612 TCCCACCACTTTCGTCTGTT 59.165 50.000 0.00 0.00 0.00 3.16
681 685 0.106149 GTCCCACCACTTTCGTCTGT 59.894 55.000 0.00 0.00 0.00 3.41
682 686 0.393077 AGTCCCACCACTTTCGTCTG 59.607 55.000 0.00 0.00 0.00 3.51
683 687 2.005370 TAGTCCCACCACTTTCGTCT 57.995 50.000 0.00 0.00 0.00 4.18
684 688 3.259902 GAATAGTCCCACCACTTTCGTC 58.740 50.000 0.00 0.00 0.00 4.20
685 689 2.635915 TGAATAGTCCCACCACTTTCGT 59.364 45.455 0.00 0.00 0.00 3.85
686 690 3.328382 TGAATAGTCCCACCACTTTCG 57.672 47.619 0.00 0.00 0.00 3.46
687 691 3.756963 GGTTGAATAGTCCCACCACTTTC 59.243 47.826 4.24 0.00 0.00 2.62
688 692 3.139397 TGGTTGAATAGTCCCACCACTTT 59.861 43.478 7.13 0.00 33.23 2.66
689 693 2.714250 TGGTTGAATAGTCCCACCACTT 59.286 45.455 7.13 0.00 33.23 3.16
690 694 2.344592 TGGTTGAATAGTCCCACCACT 58.655 47.619 7.13 0.00 33.23 4.00
691 695 2.817844 GTTGGTTGAATAGTCCCACCAC 59.182 50.000 10.10 4.11 36.35 4.16
692 696 2.714250 AGTTGGTTGAATAGTCCCACCA 59.286 45.455 7.13 7.13 35.33 4.17
693 697 3.434940 AGTTGGTTGAATAGTCCCACC 57.565 47.619 2.42 2.42 0.00 4.61
694 698 4.142038 ACAAGTTGGTTGAATAGTCCCAC 58.858 43.478 7.96 0.00 38.60 4.61
695 699 4.394729 GACAAGTTGGTTGAATAGTCCCA 58.605 43.478 7.96 0.00 38.60 4.37
696 700 3.756963 GGACAAGTTGGTTGAATAGTCCC 59.243 47.826 7.96 0.00 38.60 4.46
697 701 4.394729 TGGACAAGTTGGTTGAATAGTCC 58.605 43.478 7.96 0.00 43.41 3.85
698 702 6.575162 AATGGACAAGTTGGTTGAATAGTC 57.425 37.500 7.96 0.00 38.60 2.59
699 703 6.659242 CCTAATGGACAAGTTGGTTGAATAGT 59.341 38.462 7.96 0.00 39.71 2.12
700 704 6.884295 TCCTAATGGACAAGTTGGTTGAATAG 59.116 38.462 7.96 2.96 39.71 1.73
701 705 6.785076 TCCTAATGGACAAGTTGGTTGAATA 58.215 36.000 7.96 0.00 39.71 1.75
702 706 5.640147 TCCTAATGGACAAGTTGGTTGAAT 58.360 37.500 7.96 0.00 39.71 2.57
703 707 5.055265 TCCTAATGGACAAGTTGGTTGAA 57.945 39.130 7.96 0.00 39.71 2.69
704 708 4.104102 ACTCCTAATGGACAAGTTGGTTGA 59.896 41.667 7.96 0.00 39.71 3.18
705 709 4.398319 ACTCCTAATGGACAAGTTGGTTG 58.602 43.478 7.96 0.00 42.48 3.77
706 710 4.724279 ACTCCTAATGGACAAGTTGGTT 57.276 40.909 7.96 0.00 37.46 3.67
707 711 5.091552 TCTACTCCTAATGGACAAGTTGGT 58.908 41.667 7.96 0.00 37.46 3.67
708 712 5.422331 TCTCTACTCCTAATGGACAAGTTGG 59.578 44.000 7.96 0.00 37.46 3.77
709 713 6.531503 TCTCTACTCCTAATGGACAAGTTG 57.468 41.667 0.00 0.00 37.46 3.16
710 714 8.062536 ACTATCTCTACTCCTAATGGACAAGTT 58.937 37.037 0.00 0.00 37.46 2.66
711 715 7.588169 ACTATCTCTACTCCTAATGGACAAGT 58.412 38.462 0.00 0.00 37.46 3.16
712 716 8.472007 AACTATCTCTACTCCTAATGGACAAG 57.528 38.462 0.00 0.00 37.46 3.16
713 717 8.282982 AGAACTATCTCTACTCCTAATGGACAA 58.717 37.037 0.00 0.00 37.46 3.18
714 718 7.817440 AGAACTATCTCTACTCCTAATGGACA 58.183 38.462 0.00 0.00 37.46 4.02
743 747 6.262944 TGCATGGCATAAGAGAATCGTAAAAT 59.737 34.615 0.00 0.00 34.47 1.82
747 751 4.335400 TGCATGGCATAAGAGAATCGTA 57.665 40.909 0.00 0.00 34.47 3.43
797 808 5.458779 GCGAGCAAATGTTCCAAATATTACC 59.541 40.000 0.00 0.00 0.00 2.85
802 813 4.511617 TTGCGAGCAAATGTTCCAAATA 57.488 36.364 8.17 0.00 32.44 1.40
868 879 7.279536 GGTATAGTTGATGCTGATGATGGTATG 59.720 40.741 0.00 0.00 0.00 2.39
872 883 4.628766 CGGTATAGTTGATGCTGATGATGG 59.371 45.833 0.00 0.00 0.00 3.51
878 889 6.459670 TTTAGACGGTATAGTTGATGCTGA 57.540 37.500 0.00 0.00 31.31 4.26
879 890 7.534085 TTTTTAGACGGTATAGTTGATGCTG 57.466 36.000 0.00 0.00 32.98 4.41
880 891 8.732746 AATTTTTAGACGGTATAGTTGATGCT 57.267 30.769 0.00 0.00 0.00 3.79
881 892 8.609176 TGAATTTTTAGACGGTATAGTTGATGC 58.391 33.333 0.00 0.00 0.00 3.91
941 957 4.455606 AGAGTATATTCTGGTTGCCAAGC 58.544 43.478 0.00 0.00 30.80 4.01
1143 1168 2.761465 GGAGGCCAGGAGGGGAATG 61.761 68.421 5.01 0.00 37.04 2.67
1144 1169 2.368878 GGAGGCCAGGAGGGGAAT 60.369 66.667 5.01 0.00 37.04 3.01
1145 1170 3.626596 AGGAGGCCAGGAGGGGAA 61.627 66.667 5.01 0.00 37.04 3.97
1146 1171 4.095400 GAGGAGGCCAGGAGGGGA 62.095 72.222 5.01 0.00 37.04 4.81
1148 1173 3.950861 TTGGAGGAGGCCAGGAGGG 62.951 68.421 5.01 0.00 39.52 4.30
1150 1175 2.674220 GGTTGGAGGAGGCCAGGAG 61.674 68.421 5.01 0.00 39.52 3.69
1152 1177 2.612115 AGGTTGGAGGAGGCCAGG 60.612 66.667 5.01 0.00 39.52 4.45
1154 1179 2.610859 GGAGGTTGGAGGAGGCCA 60.611 66.667 5.01 0.00 35.78 5.36
1155 1180 3.412408 GGGAGGTTGGAGGAGGCC 61.412 72.222 0.00 0.00 0.00 5.19
1156 1181 3.412408 GGGGAGGTTGGAGGAGGC 61.412 72.222 0.00 0.00 0.00 4.70
1339 1364 3.798954 GAGCCGCCGGAGAGAATGG 62.799 68.421 7.68 0.00 0.00 3.16
1449 1474 3.553437 CTATGGACGCCGCGGGTAG 62.553 68.421 29.38 12.83 0.00 3.18
1454 1479 1.660575 CTAACCTATGGACGCCGCG 60.661 63.158 12.14 12.14 0.00 6.46
1526 1551 2.267961 CGGGGAGAAGGAAACGGG 59.732 66.667 0.00 0.00 0.00 5.28
1527 1552 1.079336 GACGGGGAGAAGGAAACGG 60.079 63.158 0.00 0.00 0.00 4.44
1728 1754 8.215050 AGAGATACTAGTAGTTACTGCATCTGT 58.785 37.037 8.40 5.36 37.10 3.41
1764 1790 2.008329 GGTTTCAGATCTGCAGCTGAG 58.992 52.381 20.43 12.20 41.67 3.35
1837 1865 0.881159 GCAACAAGCAATGGCAAGCA 60.881 50.000 16.10 0.00 44.61 3.91
1926 1982 0.808125 ACTAGACGCAGAGAGCACAG 59.192 55.000 0.00 0.00 46.13 3.66
1965 2021 3.810310 AGCCCACGAAATCAACAAAAA 57.190 38.095 0.00 0.00 0.00 1.94
1981 2037 5.644977 ATCAAAGCTACTAAACAAAGCCC 57.355 39.130 0.00 0.00 36.92 5.19
2197 2253 3.380320 GCAGTTACCCACAAAGACAGTTT 59.620 43.478 0.00 0.00 0.00 2.66
2297 2353 1.340889 GGCACAAGGTTGAAATCAGCA 59.659 47.619 0.00 0.00 0.00 4.41
2462 2518 4.646945 CCCTCACAGCTGATAAGAACTAGA 59.353 45.833 23.35 1.51 0.00 2.43
2565 2621 3.973657 ACAGCAGCAAATCAGAAAACTG 58.026 40.909 0.00 0.00 0.00 3.16
2583 2639 5.714047 TCTAGATGCACACAGAAACTACAG 58.286 41.667 0.00 0.00 0.00 2.74
2718 2774 3.173151 TGGAACAAGTGCTGGATCTAGA 58.827 45.455 10.75 0.00 31.92 2.43
2776 2832 3.487042 GCTACAGAATTGTGCAGCAGATG 60.487 47.826 19.99 0.00 38.31 2.90
2835 2891 1.069978 TGCAACTGGATCGTTCAGACA 59.930 47.619 4.68 0.00 36.22 3.41
2843 2899 2.543012 GACATCAGATGCAACTGGATCG 59.457 50.000 22.19 11.43 45.88 3.69
2919 2975 5.639506 CACGAATCTAACACAAGAATGGTCT 59.360 40.000 0.00 0.00 34.72 3.85
3420 3476 1.539827 GGGGCGCGCATTAATATCTTT 59.460 47.619 34.42 0.00 0.00 2.52
3782 3839 4.528987 TGCAATCCAGTACCTACAGTGTAA 59.471 41.667 4.21 0.00 0.00 2.41
3790 3847 1.269569 CGCGATGCAATCCAGTACCTA 60.270 52.381 0.00 0.00 41.39 3.08
3936 3993 2.225467 GAGCTCAGTTTTTGACAGCCT 58.775 47.619 9.40 0.00 29.81 4.58
4125 4182 0.393808 TTGACAATCGCCTTAGCCCC 60.394 55.000 0.00 0.00 34.57 5.80
4497 4554 5.352016 TGTGCGGTAAACATATAACTTGTCC 59.648 40.000 0.00 0.00 0.00 4.02
4673 4730 7.322664 AGAAACAAAAGAATGCAACTTCAAGA 58.677 30.769 9.38 0.00 0.00 3.02
4674 4731 7.529880 AGAAACAAAAGAATGCAACTTCAAG 57.470 32.000 9.38 6.09 0.00 3.02
4699 4756 2.523245 AGAGGATCATATGAGCTGCGA 58.477 47.619 19.70 0.00 37.82 5.10
4830 4887 9.887406 GCTACAATCTAGTGAGAAAGTAGATAC 57.113 37.037 15.60 0.00 46.59 2.24
4840 4898 7.775561 TGATTGAGTAGCTACAATCTAGTGAGA 59.224 37.037 25.58 10.56 46.88 3.27
4884 4942 8.658499 TCATATCATGCAATATATCAGCAGAC 57.342 34.615 15.36 0.00 42.14 3.51
5027 5086 1.674322 GTGGCTTTTCCTGGCGCTA 60.674 57.895 7.64 0.00 37.48 4.26
5188 5247 8.135382 AGTACAGCATAGTAGAGGAAAAAGAA 57.865 34.615 0.00 0.00 0.00 2.52
5189 5248 7.147880 GGAGTACAGCATAGTAGAGGAAAAAGA 60.148 40.741 0.00 0.00 0.00 2.52
5297 5356 1.790755 CCATTGTCGTTTCGGTCAGA 58.209 50.000 0.00 0.00 0.00 3.27
5312 5371 1.188863 GAGCAAGGTCATTGGCCATT 58.811 50.000 6.09 0.00 39.47 3.16
5324 5383 1.402968 CATGATTTCACGGGAGCAAGG 59.597 52.381 0.00 0.00 0.00 3.61
5434 5493 1.626654 CTCATCCGGACGCACACAAC 61.627 60.000 6.12 0.00 0.00 3.32
5485 5546 2.764637 ATTTCGTTGGCTTCCCGGCT 62.765 55.000 0.00 0.00 39.32 5.52
5528 5589 4.515567 CCAGAGTCGTATAGAGCACACATA 59.484 45.833 0.00 0.00 0.00 2.29
5529 5590 3.316588 CCAGAGTCGTATAGAGCACACAT 59.683 47.826 0.00 0.00 0.00 3.21
5530 5591 2.683362 CCAGAGTCGTATAGAGCACACA 59.317 50.000 0.00 0.00 0.00 3.72
5581 5644 3.304928 GGTTGTGGAGTGAGCAAAATGAG 60.305 47.826 0.00 0.00 0.00 2.90
5582 5645 2.622942 GGTTGTGGAGTGAGCAAAATGA 59.377 45.455 0.00 0.00 0.00 2.57
5594 5657 0.396417 TGGGGTTTGTGGTTGTGGAG 60.396 55.000 0.00 0.00 0.00 3.86
5629 5692 7.024171 CGTACCATGCATGTGTTTGTATAAAA 58.976 34.615 24.58 2.47 0.00 1.52
5630 5693 6.149640 ACGTACCATGCATGTGTTTGTATAAA 59.850 34.615 24.58 3.11 0.00 1.40
5631 5694 5.644206 ACGTACCATGCATGTGTTTGTATAA 59.356 36.000 24.58 3.76 0.00 0.98
5632 5695 5.179533 ACGTACCATGCATGTGTTTGTATA 58.820 37.500 24.58 4.40 0.00 1.47
5633 5696 4.006989 ACGTACCATGCATGTGTTTGTAT 58.993 39.130 24.58 3.62 0.00 2.29
5634 5697 3.403968 ACGTACCATGCATGTGTTTGTA 58.596 40.909 24.58 15.69 0.00 2.41
5635 5698 2.226330 ACGTACCATGCATGTGTTTGT 58.774 42.857 24.58 16.67 0.00 2.83
5636 5699 2.979151 CAACGTACCATGCATGTGTTTG 59.021 45.455 24.58 17.24 0.00 2.93
5637 5700 2.030363 CCAACGTACCATGCATGTGTTT 60.030 45.455 24.58 10.82 0.00 2.83
5638 5701 1.539388 CCAACGTACCATGCATGTGTT 59.461 47.619 24.58 18.69 0.00 3.32
5639 5702 1.164411 CCAACGTACCATGCATGTGT 58.836 50.000 24.58 21.97 0.00 3.72
5640 5703 1.130373 GACCAACGTACCATGCATGTG 59.870 52.381 24.58 17.76 0.00 3.21
5641 5704 1.271108 TGACCAACGTACCATGCATGT 60.271 47.619 24.58 15.01 0.00 3.21
5642 5705 1.447945 TGACCAACGTACCATGCATG 58.552 50.000 20.19 20.19 0.00 4.06
5643 5706 2.418368 ATGACCAACGTACCATGCAT 57.582 45.000 0.00 0.00 0.00 3.96
5644 5707 2.623535 GTATGACCAACGTACCATGCA 58.376 47.619 0.00 0.00 35.59 3.96
5657 5720 7.801716 TGTTTTTATGCTATCTGGTATGACC 57.198 36.000 0.00 0.00 39.22 4.02
5661 5724 9.726438 GGAGTATGTTTTTATGCTATCTGGTAT 57.274 33.333 0.00 0.00 0.00 2.73
5662 5725 8.154856 GGGAGTATGTTTTTATGCTATCTGGTA 58.845 37.037 0.00 0.00 0.00 3.25
5663 5726 6.998673 GGGAGTATGTTTTTATGCTATCTGGT 59.001 38.462 0.00 0.00 0.00 4.00
5664 5727 7.227156 AGGGAGTATGTTTTTATGCTATCTGG 58.773 38.462 0.00 0.00 0.00 3.86
5665 5728 7.389053 GGAGGGAGTATGTTTTTATGCTATCTG 59.611 40.741 0.00 0.00 0.00 2.90
5666 5729 7.454225 GGAGGGAGTATGTTTTTATGCTATCT 58.546 38.462 0.00 0.00 0.00 1.98
5667 5730 6.369065 CGGAGGGAGTATGTTTTTATGCTATC 59.631 42.308 0.00 0.00 0.00 2.08
5668 5731 6.183361 ACGGAGGGAGTATGTTTTTATGCTAT 60.183 38.462 0.00 0.00 0.00 2.97
5669 5732 5.129815 ACGGAGGGAGTATGTTTTTATGCTA 59.870 40.000 0.00 0.00 0.00 3.49
5670 5733 4.080526 ACGGAGGGAGTATGTTTTTATGCT 60.081 41.667 0.00 0.00 0.00 3.79
5671 5734 4.196971 ACGGAGGGAGTATGTTTTTATGC 58.803 43.478 0.00 0.00 0.00 3.14
5672 5735 4.814771 GGACGGAGGGAGTATGTTTTTATG 59.185 45.833 0.00 0.00 0.00 1.90
5673 5736 4.141551 GGGACGGAGGGAGTATGTTTTTAT 60.142 45.833 0.00 0.00 0.00 1.40
5674 5737 3.198417 GGGACGGAGGGAGTATGTTTTTA 59.802 47.826 0.00 0.00 0.00 1.52
5675 5738 2.026542 GGGACGGAGGGAGTATGTTTTT 60.027 50.000 0.00 0.00 0.00 1.94
5676 5739 1.558294 GGGACGGAGGGAGTATGTTTT 59.442 52.381 0.00 0.00 0.00 2.43
5677 5740 1.201424 GGGACGGAGGGAGTATGTTT 58.799 55.000 0.00 0.00 0.00 2.83
5678 5741 0.042131 TGGGACGGAGGGAGTATGTT 59.958 55.000 0.00 0.00 0.00 2.71
5679 5742 0.042131 TTGGGACGGAGGGAGTATGT 59.958 55.000 0.00 0.00 0.00 2.29
5680 5743 1.200519 TTTGGGACGGAGGGAGTATG 58.799 55.000 0.00 0.00 0.00 2.39
5681 5744 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
5682 5745 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5683 5746 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
5684 5747 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
5685 5748 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
5686 5749 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
5687 5750 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
5688 5751 2.159627 CGACAAGAATTTTGGGACGGAG 59.840 50.000 0.00 0.00 0.00 4.63
5689 5752 2.147958 CGACAAGAATTTTGGGACGGA 58.852 47.619 0.00 0.00 0.00 4.69
5690 5753 2.147958 TCGACAAGAATTTTGGGACGG 58.852 47.619 0.00 0.00 0.00 4.79
5691 5754 3.435327 TCATCGACAAGAATTTTGGGACG 59.565 43.478 0.00 0.00 0.00 4.79
5692 5755 5.371115 TTCATCGACAAGAATTTTGGGAC 57.629 39.130 0.00 0.00 0.00 4.46
5693 5756 6.588719 AATTCATCGACAAGAATTTTGGGA 57.411 33.333 13.51 3.62 40.50 4.37
5699 5762 6.015519 TGTCCCAAAATTCATCGACAAGAATT 60.016 34.615 13.51 13.51 44.03 2.17
5700 5763 5.476599 TGTCCCAAAATTCATCGACAAGAAT 59.523 36.000 0.00 0.00 36.09 2.40
5701 5764 4.824537 TGTCCCAAAATTCATCGACAAGAA 59.175 37.500 0.00 0.00 0.00 2.52
5702 5765 4.393834 TGTCCCAAAATTCATCGACAAGA 58.606 39.130 0.00 0.00 0.00 3.02
5703 5766 4.455533 TCTGTCCCAAAATTCATCGACAAG 59.544 41.667 0.00 0.00 30.44 3.16
5704 5767 4.393834 TCTGTCCCAAAATTCATCGACAA 58.606 39.130 0.00 0.00 30.44 3.18
5705 5768 4.002982 CTCTGTCCCAAAATTCATCGACA 58.997 43.478 0.00 0.00 0.00 4.35
5706 5769 3.375299 CCTCTGTCCCAAAATTCATCGAC 59.625 47.826 0.00 0.00 0.00 4.20
5707 5770 3.609853 CCTCTGTCCCAAAATTCATCGA 58.390 45.455 0.00 0.00 0.00 3.59
5708 5771 2.684881 CCCTCTGTCCCAAAATTCATCG 59.315 50.000 0.00 0.00 0.00 3.84
5709 5772 3.950395 CTCCCTCTGTCCCAAAATTCATC 59.050 47.826 0.00 0.00 0.00 2.92
5710 5773 3.334881 ACTCCCTCTGTCCCAAAATTCAT 59.665 43.478 0.00 0.00 0.00 2.57
5711 5774 2.716424 ACTCCCTCTGTCCCAAAATTCA 59.284 45.455 0.00 0.00 0.00 2.57
5712 5775 3.441500 ACTCCCTCTGTCCCAAAATTC 57.558 47.619 0.00 0.00 0.00 2.17
5713 5776 3.010250 GGTACTCCCTCTGTCCCAAAATT 59.990 47.826 0.00 0.00 0.00 1.82
5714 5777 2.576648 GGTACTCCCTCTGTCCCAAAAT 59.423 50.000 0.00 0.00 0.00 1.82
5715 5778 1.982958 GGTACTCCCTCTGTCCCAAAA 59.017 52.381 0.00 0.00 0.00 2.44
5716 5779 1.132657 TGGTACTCCCTCTGTCCCAAA 60.133 52.381 0.00 0.00 0.00 3.28
5717 5780 0.490017 TGGTACTCCCTCTGTCCCAA 59.510 55.000 0.00 0.00 0.00 4.12
5718 5781 0.490017 TTGGTACTCCCTCTGTCCCA 59.510 55.000 0.00 0.00 0.00 4.37
5719 5782 1.652947 TTTGGTACTCCCTCTGTCCC 58.347 55.000 0.00 0.00 0.00 4.46
5720 5783 3.610911 CAATTTGGTACTCCCTCTGTCC 58.389 50.000 0.00 0.00 0.00 4.02
5721 5784 3.010420 GCAATTTGGTACTCCCTCTGTC 58.990 50.000 0.00 0.00 0.00 3.51
5722 5785 2.290960 GGCAATTTGGTACTCCCTCTGT 60.291 50.000 0.00 0.00 0.00 3.41
5723 5786 2.369394 GGCAATTTGGTACTCCCTCTG 58.631 52.381 0.00 0.00 0.00 3.35
5724 5787 1.065418 CGGCAATTTGGTACTCCCTCT 60.065 52.381 0.00 0.00 0.00 3.69
5725 5788 1.379527 CGGCAATTTGGTACTCCCTC 58.620 55.000 0.00 0.00 0.00 4.30
5726 5789 0.679960 GCGGCAATTTGGTACTCCCT 60.680 55.000 0.00 0.00 0.00 4.20
5727 5790 1.663379 GGCGGCAATTTGGTACTCCC 61.663 60.000 3.07 0.00 0.00 4.30
5728 5791 1.663379 GGGCGGCAATTTGGTACTCC 61.663 60.000 12.47 0.00 0.00 3.85
5729 5792 0.679960 AGGGCGGCAATTTGGTACTC 60.680 55.000 12.47 0.00 0.00 2.59
5730 5793 0.621609 TAGGGCGGCAATTTGGTACT 59.378 50.000 12.47 0.00 0.00 2.73
5731 5794 1.336755 CATAGGGCGGCAATTTGGTAC 59.663 52.381 12.47 0.00 0.00 3.34
5732 5795 1.064314 ACATAGGGCGGCAATTTGGTA 60.064 47.619 12.47 0.00 0.00 3.25
5733 5796 0.324275 ACATAGGGCGGCAATTTGGT 60.324 50.000 12.47 0.00 0.00 3.67
5734 5797 0.823460 AACATAGGGCGGCAATTTGG 59.177 50.000 12.47 0.00 0.00 3.28
5735 5798 1.204467 ACAACATAGGGCGGCAATTTG 59.796 47.619 12.47 8.73 0.00 2.32
5736 5799 1.476488 GACAACATAGGGCGGCAATTT 59.524 47.619 12.47 0.00 0.00 1.82
5737 5800 1.102978 GACAACATAGGGCGGCAATT 58.897 50.000 12.47 0.00 0.00 2.32
5738 5801 0.255890 AGACAACATAGGGCGGCAAT 59.744 50.000 12.47 0.00 0.00 3.56
5739 5802 0.392461 GAGACAACATAGGGCGGCAA 60.392 55.000 12.47 0.00 0.00 4.52
5740 5803 1.220749 GAGACAACATAGGGCGGCA 59.779 57.895 12.47 0.00 0.00 5.69
5741 5804 0.392461 TTGAGACAACATAGGGCGGC 60.392 55.000 0.00 0.00 0.00 6.53
5742 5805 1.338674 TGTTGAGACAACATAGGGCGG 60.339 52.381 12.32 0.00 31.49 6.13
5743 5806 2.093306 TGTTGAGACAACATAGGGCG 57.907 50.000 12.32 0.00 31.49 6.13
5837 5900 8.434589 AATCTTTTGGGTTTCATCTCCATAAA 57.565 30.769 0.00 0.00 0.00 1.40
5949 6012 1.324740 AAGATACGGCGCACCACCTA 61.325 55.000 10.83 0.00 34.57 3.08
5956 6019 3.188773 CGGATTAAGATACGGCGCA 57.811 52.632 10.83 0.00 35.92 6.09
5969 6032 1.494721 ACTTGCCACCATATCCGGATT 59.505 47.619 24.71 7.82 0.00 3.01
5979 6042 2.031012 CTCGCTCACTTGCCACCA 59.969 61.111 0.00 0.00 0.00 4.17
6034 6099 0.892755 TTTCCACTACATCCGAGCGT 59.107 50.000 0.00 0.00 0.00 5.07
6038 6103 3.055458 TGCTCATTTTCCACTACATCCGA 60.055 43.478 0.00 0.00 0.00 4.55
6152 6217 1.125093 TCCCGAAGCTTCCCTGTCAA 61.125 55.000 20.62 0.00 0.00 3.18
6234 6299 0.610687 CTCCTTCGCCTTCTGTCCTT 59.389 55.000 0.00 0.00 0.00 3.36
6373 6438 2.119495 AGCTTCACCAGGATAATCCGT 58.881 47.619 0.00 0.00 42.75 4.69
6388 6453 4.246458 CCAAGTACTCAACTACCAGCTTC 58.754 47.826 0.00 0.00 37.50 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.