Multiple sequence alignment - TraesCS2D01G284900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G284900 chr2D 100.000 3290 0 0 1 3290 360454289 360457578 0.000000e+00 6076.0
1 TraesCS2D01G284900 chr2D 96.381 2680 47 17 640 3290 158254137 158256795 0.000000e+00 4366.0
2 TraesCS2D01G284900 chr2D 96.792 2400 42 18 640 3010 537200733 537203126 0.000000e+00 3973.0
3 TraesCS2D01G284900 chr2D 97.087 1785 31 13 640 2404 2328936 2327153 0.000000e+00 2988.0
4 TraesCS2D01G284900 chr2D 95.169 890 8 2 2402 3290 2322630 2321775 0.000000e+00 1373.0
5 TraesCS2D01G284900 chr2D 99.218 639 5 0 1 639 434903386 434902748 0.000000e+00 1153.0
6 TraesCS2D01G284900 chr2D 100.000 210 0 0 3486 3695 360457774 360457983 4.470000e-104 388.0
7 TraesCS2D01G284900 chr2D 96.970 33 1 0 3258 3290 2320612 2320580 5.160000e-04 56.5
8 TraesCS2D01G284900 chr2D 100.000 28 0 0 3262 3289 615868431 615868404 7.000000e-03 52.8
9 TraesCS2D01G284900 chr3D 97.564 2668 43 12 640 3285 245294091 245291424 0.000000e+00 4547.0
10 TraesCS2D01G284900 chr3D 96.749 2553 45 18 640 3163 367347561 367350104 0.000000e+00 4220.0
11 TraesCS2D01G284900 chr3D 97.167 1906 35 11 640 2526 135143129 135145034 0.000000e+00 3203.0
12 TraesCS2D01G284900 chr3D 96.435 1599 38 11 630 2209 210991596 210993194 0.000000e+00 2619.0
13 TraesCS2D01G284900 chr3D 98.130 1016 10 2 2239 3253 210993195 210994202 0.000000e+00 1762.0
14 TraesCS2D01G284900 chr3D 96.753 770 6 3 2522 3290 210995265 210996016 0.000000e+00 1266.0
15 TraesCS2D01G284900 chr3D 87.562 201 23 2 3496 3695 405845577 405845776 7.980000e-57 231.0
16 TraesCS2D01G284900 chr5D 97.457 2674 48 12 637 3290 444148164 444150837 0.000000e+00 4543.0
17 TraesCS2D01G284900 chr5D 96.905 2682 52 15 640 3290 38198798 38201479 0.000000e+00 4464.0
18 TraesCS2D01G284900 chr5D 97.423 2251 38 14 638 2868 473113752 473111502 0.000000e+00 3818.0
19 TraesCS2D01G284900 chr5D 99.218 639 5 0 1 639 5853415 5854053 0.000000e+00 1153.0
20 TraesCS2D01G284900 chr5D 99.218 639 5 0 1 639 126991108 126990470 0.000000e+00 1153.0
21 TraesCS2D01G284900 chr5D 100.000 210 0 0 3486 3695 444150991 444151200 4.470000e-104 388.0
22 TraesCS2D01G284900 chr5D 96.988 166 5 0 3530 3695 444165296 444165461 2.810000e-71 279.0
23 TraesCS2D01G284900 chr4D 97.001 2668 41 13 640 3287 61989553 61992201 0.000000e+00 4447.0
24 TraesCS2D01G284900 chr4D 96.948 2621 50 14 640 3240 509000553 508997943 0.000000e+00 4370.0
25 TraesCS2D01G284900 chr4D 96.591 2640 57 19 640 3256 7014738 7012109 0.000000e+00 4346.0
26 TraesCS2D01G284900 chr4D 95.858 2680 60 22 639 3273 481098182 481100855 0.000000e+00 4287.0
27 TraesCS2D01G284900 chr4D 100.000 210 0 0 3486 3695 61992339 61992548 4.470000e-104 388.0
28 TraesCS2D01G284900 chr4D 95.146 206 9 1 3490 3695 508996451 508996247 1.280000e-84 324.0
29 TraesCS2D01G284900 chr4D 88.060 201 22 2 3496 3695 346107451 346107252 1.720000e-58 237.0
30 TraesCS2D01G284900 chr1D 96.527 2649 45 14 640 3268 485468923 485466302 0.000000e+00 4338.0
31 TraesCS2D01G284900 chr1D 96.101 2539 59 21 637 3154 318136722 318139241 0.000000e+00 4104.0
32 TraesCS2D01G284900 chr1D 99.218 639 5 0 1 639 112066899 112067537 0.000000e+00 1153.0
33 TraesCS2D01G284900 chr1D 99.061 639 6 0 1 639 144261952 144261314 0.000000e+00 1147.0
34 TraesCS2D01G284900 chr1D 99.061 639 6 0 1 639 268717063 268717701 0.000000e+00 1147.0
35 TraesCS2D01G284900 chr1D 99.061 639 6 0 1 639 462694683 462694045 0.000000e+00 1147.0
36 TraesCS2D01G284900 chr1D 92.222 180 13 1 3517 3695 318140072 318140251 1.700000e-63 254.0
37 TraesCS2D01G284900 chr7D 96.808 2600 50 15 640 3210 78262380 78259785 0.000000e+00 4311.0
38 TraesCS2D01G284900 chr7D 87.923 207 23 2 3490 3695 428974997 428974792 3.690000e-60 243.0
39 TraesCS2D01G284900 chr6D 99.061 639 6 0 1 639 229855016 229854378 0.000000e+00 1147.0
40 TraesCS2D01G284900 chr6D 99.061 639 6 0 1 639 271940612 271939974 0.000000e+00 1147.0
41 TraesCS2D01G284900 chr6D 87.923 207 23 2 3490 3695 18603576 18603781 3.690000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G284900 chr2D 360454289 360457983 3694 False 3232.000000 6076 100.0000 1 3695 2 chr2D.!!$F3 3694
1 TraesCS2D01G284900 chr2D 158254137 158256795 2658 False 4366.000000 4366 96.3810 640 3290 1 chr2D.!!$F1 2650
2 TraesCS2D01G284900 chr2D 537200733 537203126 2393 False 3973.000000 3973 96.7920 640 3010 1 chr2D.!!$F2 2370
3 TraesCS2D01G284900 chr2D 2327153 2328936 1783 True 2988.000000 2988 97.0870 640 2404 1 chr2D.!!$R1 1764
4 TraesCS2D01G284900 chr2D 434902748 434903386 638 True 1153.000000 1153 99.2180 1 639 1 chr2D.!!$R2 638
5 TraesCS2D01G284900 chr2D 2320580 2322630 2050 True 714.750000 1373 96.0695 2402 3290 2 chr2D.!!$R4 888
6 TraesCS2D01G284900 chr3D 245291424 245294091 2667 True 4547.000000 4547 97.5640 640 3285 1 chr3D.!!$R1 2645
7 TraesCS2D01G284900 chr3D 367347561 367350104 2543 False 4220.000000 4220 96.7490 640 3163 1 chr3D.!!$F2 2523
8 TraesCS2D01G284900 chr3D 135143129 135145034 1905 False 3203.000000 3203 97.1670 640 2526 1 chr3D.!!$F1 1886
9 TraesCS2D01G284900 chr3D 210991596 210996016 4420 False 1882.333333 2619 97.1060 630 3290 3 chr3D.!!$F4 2660
10 TraesCS2D01G284900 chr5D 38198798 38201479 2681 False 4464.000000 4464 96.9050 640 3290 1 chr5D.!!$F2 2650
11 TraesCS2D01G284900 chr5D 473111502 473113752 2250 True 3818.000000 3818 97.4230 638 2868 1 chr5D.!!$R2 2230
12 TraesCS2D01G284900 chr5D 444148164 444151200 3036 False 2465.500000 4543 98.7285 637 3695 2 chr5D.!!$F4 3058
13 TraesCS2D01G284900 chr5D 5853415 5854053 638 False 1153.000000 1153 99.2180 1 639 1 chr5D.!!$F1 638
14 TraesCS2D01G284900 chr5D 126990470 126991108 638 True 1153.000000 1153 99.2180 1 639 1 chr5D.!!$R1 638
15 TraesCS2D01G284900 chr4D 7012109 7014738 2629 True 4346.000000 4346 96.5910 640 3256 1 chr4D.!!$R1 2616
16 TraesCS2D01G284900 chr4D 481098182 481100855 2673 False 4287.000000 4287 95.8580 639 3273 1 chr4D.!!$F1 2634
17 TraesCS2D01G284900 chr4D 61989553 61992548 2995 False 2417.500000 4447 98.5005 640 3695 2 chr4D.!!$F2 3055
18 TraesCS2D01G284900 chr4D 508996247 509000553 4306 True 2347.000000 4370 96.0470 640 3695 2 chr4D.!!$R3 3055
19 TraesCS2D01G284900 chr1D 485466302 485468923 2621 True 4338.000000 4338 96.5270 640 3268 1 chr1D.!!$R3 2628
20 TraesCS2D01G284900 chr1D 318136722 318140251 3529 False 2179.000000 4104 94.1615 637 3695 2 chr1D.!!$F3 3058
21 TraesCS2D01G284900 chr1D 112066899 112067537 638 False 1153.000000 1153 99.2180 1 639 1 chr1D.!!$F1 638
22 TraesCS2D01G284900 chr1D 144261314 144261952 638 True 1147.000000 1147 99.0610 1 639 1 chr1D.!!$R1 638
23 TraesCS2D01G284900 chr1D 268717063 268717701 638 False 1147.000000 1147 99.0610 1 639 1 chr1D.!!$F2 638
24 TraesCS2D01G284900 chr1D 462694045 462694683 638 True 1147.000000 1147 99.0610 1 639 1 chr1D.!!$R2 638
25 TraesCS2D01G284900 chr7D 78259785 78262380 2595 True 4311.000000 4311 96.8080 640 3210 1 chr7D.!!$R1 2570
26 TraesCS2D01G284900 chr6D 229854378 229855016 638 True 1147.000000 1147 99.0610 1 639 1 chr6D.!!$R1 638
27 TraesCS2D01G284900 chr6D 271939974 271940612 638 True 1147.000000 1147 99.0610 1 639 1 chr6D.!!$R2 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 535 0.037303 ATGGTGGAGCTGTCAGTTGG 59.963 55.0 0.93 0.0 0.00 3.77 F
541 542 0.107017 AGCTGTCAGTTGGTGCAGTT 60.107 50.0 0.93 0.0 34.56 3.16 F
561 562 0.163788 CTAAGCAAAGTGTCGTGGCG 59.836 55.0 0.00 0.0 0.00 5.69 F
581 582 0.454600 GGATCTACGTGTGAAGCGGA 59.545 55.0 0.00 0.0 0.00 5.54 F
587 588 0.601558 ACGTGTGAAGCGGAGTACAT 59.398 50.0 0.00 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1432 1442 2.438021 ACAGGTGGCAAACAAGACTCTA 59.562 45.455 0.0 0.0 0.00 2.43 R
1565 1575 3.375782 ACACTGCATTTGGAAAGAAGC 57.624 42.857 0.0 0.0 0.00 3.86 R
2329 2428 4.039488 TGCATCTTTCTTTGCCATTTCTGT 59.961 37.500 0.0 0.0 38.08 3.41 R
2364 2463 6.828785 ACAGGAGTTCATACTTTTGTTGAAGT 59.171 34.615 0.0 0.0 42.27 3.01 R
3089 3265 2.092323 GGAACCACCTAAAGCATCACC 58.908 52.381 0.0 0.0 35.41 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 173 3.393278 AGGGTTCTTGCCTGTACTACAAA 59.607 43.478 0.00 0.00 0.00 2.83
328 329 5.511031 GCTATAAGTTTAGCAGGGAGGTACC 60.511 48.000 2.73 2.73 43.33 3.34
329 330 2.337359 AGTTTAGCAGGGAGGTACCA 57.663 50.000 15.94 0.00 41.20 3.25
330 331 2.627933 AGTTTAGCAGGGAGGTACCAA 58.372 47.619 15.94 0.00 41.20 3.67
331 332 2.983898 AGTTTAGCAGGGAGGTACCAAA 59.016 45.455 15.94 0.00 41.20 3.28
332 333 3.009143 AGTTTAGCAGGGAGGTACCAAAG 59.991 47.826 15.94 0.00 41.20 2.77
333 334 2.337359 TAGCAGGGAGGTACCAAAGT 57.663 50.000 15.94 0.00 41.20 2.66
334 335 2.337359 AGCAGGGAGGTACCAAAGTA 57.663 50.000 15.94 0.00 41.20 2.24
335 336 2.627933 AGCAGGGAGGTACCAAAGTAA 58.372 47.619 15.94 0.00 41.20 2.24
336 337 3.190439 AGCAGGGAGGTACCAAAGTAAT 58.810 45.455 15.94 0.00 41.20 1.89
337 338 3.200165 AGCAGGGAGGTACCAAAGTAATC 59.800 47.826 15.94 0.07 41.20 1.75
338 339 3.684697 GCAGGGAGGTACCAAAGTAATCC 60.685 52.174 15.94 10.09 41.20 3.01
339 340 3.521937 CAGGGAGGTACCAAAGTAATCCA 59.478 47.826 15.94 0.00 37.93 3.41
340 341 3.780850 AGGGAGGTACCAAAGTAATCCAG 59.219 47.826 15.94 0.00 37.93 3.86
341 342 3.118000 GGGAGGTACCAAAGTAATCCAGG 60.118 52.174 15.94 0.00 37.93 4.45
342 343 3.778629 GGAGGTACCAAAGTAATCCAGGA 59.221 47.826 15.94 0.00 36.92 3.86
343 344 4.141688 GGAGGTACCAAAGTAATCCAGGAG 60.142 50.000 15.94 0.00 36.92 3.69
344 345 4.436079 AGGTACCAAAGTAATCCAGGAGT 58.564 43.478 15.94 0.00 0.00 3.85
345 346 4.225267 AGGTACCAAAGTAATCCAGGAGTG 59.775 45.833 15.94 0.00 0.00 3.51
346 347 3.721087 ACCAAAGTAATCCAGGAGTGG 57.279 47.619 0.00 0.50 46.63 4.00
357 358 1.269958 CAGGAGTGGATCACTGGACA 58.730 55.000 5.20 0.00 45.44 4.02
358 359 1.206610 CAGGAGTGGATCACTGGACAG 59.793 57.143 5.20 0.00 45.44 3.51
359 360 0.107945 GGAGTGGATCACTGGACAGC 60.108 60.000 5.20 0.00 45.44 4.40
360 361 0.459237 GAGTGGATCACTGGACAGCG 60.459 60.000 5.20 0.00 45.44 5.18
361 362 1.448540 GTGGATCACTGGACAGCGG 60.449 63.158 0.00 0.00 0.00 5.52
362 363 1.913262 TGGATCACTGGACAGCGGT 60.913 57.895 0.00 0.00 0.00 5.68
363 364 1.153549 GGATCACTGGACAGCGGTC 60.154 63.158 8.64 8.64 43.55 4.79
364 365 1.591703 GATCACTGGACAGCGGTCA 59.408 57.895 18.81 4.37 46.17 4.02
365 366 0.037326 GATCACTGGACAGCGGTCAA 60.037 55.000 18.81 6.61 46.17 3.18
367 368 1.112916 TCACTGGACAGCGGTCAAGA 61.113 55.000 25.82 11.20 46.38 3.02
368 369 0.249868 CACTGGACAGCGGTCAAGAA 60.250 55.000 25.82 4.80 46.38 2.52
369 370 0.249911 ACTGGACAGCGGTCAAGAAC 60.250 55.000 25.82 5.87 46.38 3.01
370 371 0.249868 CTGGACAGCGGTCAAGAACA 60.250 55.000 15.64 4.29 46.38 3.18
371 372 0.396435 TGGACAGCGGTCAAGAACAT 59.604 50.000 18.81 0.00 46.17 2.71
372 373 1.079503 GGACAGCGGTCAAGAACATC 58.920 55.000 18.81 0.00 46.17 3.06
373 374 1.079503 GACAGCGGTCAAGAACATCC 58.920 55.000 12.41 0.00 43.73 3.51
374 375 0.687354 ACAGCGGTCAAGAACATCCT 59.313 50.000 0.00 0.00 0.00 3.24
375 376 1.081892 CAGCGGTCAAGAACATCCTG 58.918 55.000 0.00 0.00 0.00 3.86
376 377 0.976641 AGCGGTCAAGAACATCCTGA 59.023 50.000 0.00 0.00 0.00 3.86
377 378 1.347707 AGCGGTCAAGAACATCCTGAA 59.652 47.619 0.00 0.00 0.00 3.02
378 379 2.151202 GCGGTCAAGAACATCCTGAAA 58.849 47.619 0.00 0.00 0.00 2.69
379 380 2.749621 GCGGTCAAGAACATCCTGAAAT 59.250 45.455 0.00 0.00 0.00 2.17
380 381 3.938963 GCGGTCAAGAACATCCTGAAATA 59.061 43.478 0.00 0.00 0.00 1.40
381 382 4.201822 GCGGTCAAGAACATCCTGAAATAC 60.202 45.833 0.00 0.00 0.00 1.89
382 383 4.332819 CGGTCAAGAACATCCTGAAATACC 59.667 45.833 0.00 0.00 0.00 2.73
383 384 5.501156 GGTCAAGAACATCCTGAAATACCT 58.499 41.667 0.00 0.00 0.00 3.08
384 385 5.355350 GGTCAAGAACATCCTGAAATACCTG 59.645 44.000 0.00 0.00 0.00 4.00
385 386 6.173339 GTCAAGAACATCCTGAAATACCTGA 58.827 40.000 0.00 0.00 0.00 3.86
386 387 6.655003 GTCAAGAACATCCTGAAATACCTGAA 59.345 38.462 0.00 0.00 0.00 3.02
387 388 7.174946 GTCAAGAACATCCTGAAATACCTGAAA 59.825 37.037 0.00 0.00 0.00 2.69
388 389 7.723616 TCAAGAACATCCTGAAATACCTGAAAA 59.276 33.333 0.00 0.00 0.00 2.29
389 390 7.693969 AGAACATCCTGAAATACCTGAAAAG 57.306 36.000 0.00 0.00 0.00 2.27
390 391 6.660949 AGAACATCCTGAAATACCTGAAAAGG 59.339 38.462 0.00 0.00 0.00 3.11
391 392 6.139679 ACATCCTGAAATACCTGAAAAGGA 57.860 37.500 0.00 0.00 36.81 3.36
392 393 5.946377 ACATCCTGAAATACCTGAAAAGGAC 59.054 40.000 0.00 0.00 35.28 3.85
393 394 5.843019 TCCTGAAATACCTGAAAAGGACT 57.157 39.130 0.00 0.00 0.00 3.85
394 395 6.945636 TCCTGAAATACCTGAAAAGGACTA 57.054 37.500 0.00 0.00 0.00 2.59
395 396 7.324388 TCCTGAAATACCTGAAAAGGACTAA 57.676 36.000 0.00 0.00 0.00 2.24
396 397 7.394816 TCCTGAAATACCTGAAAAGGACTAAG 58.605 38.462 0.00 0.00 0.00 2.18
397 398 6.599638 CCTGAAATACCTGAAAAGGACTAAGG 59.400 42.308 0.00 0.00 0.00 2.69
398 399 7.324388 TGAAATACCTGAAAAGGACTAAGGA 57.676 36.000 0.00 0.00 0.00 3.36
399 400 7.928873 TGAAATACCTGAAAAGGACTAAGGAT 58.071 34.615 0.00 0.00 0.00 3.24
400 401 9.053472 TGAAATACCTGAAAAGGACTAAGGATA 57.947 33.333 0.00 0.00 0.00 2.59
402 403 9.853177 AAATACCTGAAAAGGACTAAGGATATG 57.147 33.333 0.00 0.00 0.00 1.78
403 404 6.893020 ACCTGAAAAGGACTAAGGATATGT 57.107 37.500 0.00 0.00 0.00 2.29
404 405 7.272144 ACCTGAAAAGGACTAAGGATATGTT 57.728 36.000 0.00 0.00 0.00 2.71
405 406 7.699878 ACCTGAAAAGGACTAAGGATATGTTT 58.300 34.615 0.00 0.00 0.00 2.83
406 407 7.829706 ACCTGAAAAGGACTAAGGATATGTTTC 59.170 37.037 0.00 0.00 0.00 2.78
407 408 8.049721 CCTGAAAAGGACTAAGGATATGTTTCT 58.950 37.037 0.00 0.00 0.00 2.52
408 409 9.103861 CTGAAAAGGACTAAGGATATGTTTCTC 57.896 37.037 0.00 0.00 0.00 2.87
409 410 8.602424 TGAAAAGGACTAAGGATATGTTTCTCA 58.398 33.333 0.00 0.00 0.00 3.27
410 411 9.620259 GAAAAGGACTAAGGATATGTTTCTCAT 57.380 33.333 0.00 0.00 40.25 2.90
411 412 9.981460 AAAAGGACTAAGGATATGTTTCTCATT 57.019 29.630 0.00 0.00 37.91 2.57
412 413 9.981460 AAAGGACTAAGGATATGTTTCTCATTT 57.019 29.630 0.00 0.00 37.91 2.32
419 420 8.930846 AAGGATATGTTTCTCATTTATGGAGG 57.069 34.615 0.00 0.00 37.91 4.30
420 421 8.050316 AGGATATGTTTCTCATTTATGGAGGT 57.950 34.615 0.00 0.00 37.91 3.85
421 422 7.941238 AGGATATGTTTCTCATTTATGGAGGTG 59.059 37.037 0.00 0.00 37.91 4.00
422 423 7.939039 GGATATGTTTCTCATTTATGGAGGTGA 59.061 37.037 0.00 0.00 37.91 4.02
423 424 8.682936 ATATGTTTCTCATTTATGGAGGTGAC 57.317 34.615 0.00 0.00 37.91 3.67
424 425 5.875224 TGTTTCTCATTTATGGAGGTGACA 58.125 37.500 0.00 0.00 33.18 3.58
425 426 6.303054 TGTTTCTCATTTATGGAGGTGACAA 58.697 36.000 0.00 0.00 33.18 3.18
426 427 6.775142 TGTTTCTCATTTATGGAGGTGACAAA 59.225 34.615 0.00 0.00 33.18 2.83
427 428 7.040478 TGTTTCTCATTTATGGAGGTGACAAAG 60.040 37.037 0.00 0.00 33.18 2.77
428 429 6.373005 TCTCATTTATGGAGGTGACAAAGA 57.627 37.500 0.00 0.00 33.18 2.52
429 430 6.409704 TCTCATTTATGGAGGTGACAAAGAG 58.590 40.000 0.00 0.00 33.18 2.85
430 431 4.943705 TCATTTATGGAGGTGACAAAGAGC 59.056 41.667 0.00 0.00 0.00 4.09
431 432 4.640771 TTTATGGAGGTGACAAAGAGCT 57.359 40.909 0.00 0.00 0.00 4.09
432 433 2.777832 ATGGAGGTGACAAAGAGCTC 57.222 50.000 5.27 5.27 37.25 4.09
433 434 1.423584 TGGAGGTGACAAAGAGCTCA 58.576 50.000 17.77 0.00 39.29 4.26
434 435 1.980765 TGGAGGTGACAAAGAGCTCAT 59.019 47.619 17.77 0.00 39.29 2.90
435 436 2.027745 TGGAGGTGACAAAGAGCTCATC 60.028 50.000 17.77 8.32 39.29 2.92
436 437 2.266554 GAGGTGACAAAGAGCTCATCG 58.733 52.381 17.77 5.59 37.79 3.84
437 438 1.620819 AGGTGACAAAGAGCTCATCGT 59.379 47.619 17.77 9.11 0.00 3.73
438 439 2.826128 AGGTGACAAAGAGCTCATCGTA 59.174 45.455 17.77 0.00 0.00 3.43
439 440 3.258372 AGGTGACAAAGAGCTCATCGTAA 59.742 43.478 17.77 0.00 0.00 3.18
440 441 3.614616 GGTGACAAAGAGCTCATCGTAAG 59.385 47.826 17.77 0.77 0.00 2.34
441 442 4.238514 GTGACAAAGAGCTCATCGTAAGT 58.761 43.478 17.77 4.14 39.48 2.24
442 443 4.090642 GTGACAAAGAGCTCATCGTAAGTG 59.909 45.833 17.77 0.18 39.48 3.16
443 444 3.589988 ACAAAGAGCTCATCGTAAGTGG 58.410 45.455 17.77 0.00 39.48 4.00
444 445 3.006967 ACAAAGAGCTCATCGTAAGTGGT 59.993 43.478 17.77 0.00 39.48 4.16
445 446 3.963428 AAGAGCTCATCGTAAGTGGTT 57.037 42.857 17.77 0.00 39.48 3.67
446 447 5.168569 CAAAGAGCTCATCGTAAGTGGTTA 58.831 41.667 17.77 0.00 39.48 2.85
447 448 4.373348 AGAGCTCATCGTAAGTGGTTAC 57.627 45.455 17.77 0.00 36.00 2.50
457 458 4.735662 GTAAGTGGTTACGTTGATGCAA 57.264 40.909 0.00 0.00 29.52 4.08
458 459 3.896648 AAGTGGTTACGTTGATGCAAG 57.103 42.857 0.00 0.00 0.00 4.01
459 460 1.535462 AGTGGTTACGTTGATGCAAGC 59.465 47.619 0.00 0.00 0.00 4.01
460 461 1.535462 GTGGTTACGTTGATGCAAGCT 59.465 47.619 0.00 0.00 0.00 3.74
461 462 2.031157 GTGGTTACGTTGATGCAAGCTT 60.031 45.455 0.00 0.00 0.00 3.74
462 463 2.621055 TGGTTACGTTGATGCAAGCTTT 59.379 40.909 0.00 0.00 0.00 3.51
463 464 2.979813 GGTTACGTTGATGCAAGCTTTG 59.020 45.455 0.00 0.00 0.00 2.77
464 465 3.304391 GGTTACGTTGATGCAAGCTTTGA 60.304 43.478 0.00 0.00 0.00 2.69
465 466 2.405892 ACGTTGATGCAAGCTTTGAC 57.594 45.000 0.00 0.00 0.00 3.18
466 467 1.675483 ACGTTGATGCAAGCTTTGACA 59.325 42.857 0.00 0.00 0.00 3.58
467 468 2.046313 CGTTGATGCAAGCTTTGACAC 58.954 47.619 0.00 0.00 0.00 3.67
468 469 2.287188 CGTTGATGCAAGCTTTGACACT 60.287 45.455 0.00 0.00 0.00 3.55
469 470 3.047796 GTTGATGCAAGCTTTGACACTG 58.952 45.455 0.00 0.00 0.00 3.66
470 471 2.574450 TGATGCAAGCTTTGACACTGA 58.426 42.857 0.00 0.00 0.00 3.41
471 472 3.151554 TGATGCAAGCTTTGACACTGAT 58.848 40.909 0.00 0.00 0.00 2.90
472 473 3.189910 TGATGCAAGCTTTGACACTGATC 59.810 43.478 0.00 0.00 0.00 2.92
473 474 1.881973 TGCAAGCTTTGACACTGATCC 59.118 47.619 0.00 0.00 0.00 3.36
474 475 1.135859 GCAAGCTTTGACACTGATCCG 60.136 52.381 0.00 0.00 0.00 4.18
475 476 1.466167 CAAGCTTTGACACTGATCCGG 59.534 52.381 0.00 0.00 0.00 5.14
476 477 0.976641 AGCTTTGACACTGATCCGGA 59.023 50.000 6.61 6.61 0.00 5.14
477 478 1.079503 GCTTTGACACTGATCCGGAC 58.920 55.000 6.12 0.90 0.00 4.79
478 479 1.350193 CTTTGACACTGATCCGGACG 58.650 55.000 6.12 0.00 0.00 4.79
479 480 0.963225 TTTGACACTGATCCGGACGA 59.037 50.000 6.12 0.00 0.00 4.20
480 481 1.182667 TTGACACTGATCCGGACGAT 58.817 50.000 6.12 0.00 0.00 3.73
481 482 1.182667 TGACACTGATCCGGACGATT 58.817 50.000 6.12 0.00 0.00 3.34
482 483 1.134367 TGACACTGATCCGGACGATTC 59.866 52.381 6.12 0.00 0.00 2.52
483 484 1.405821 GACACTGATCCGGACGATTCT 59.594 52.381 6.12 0.00 0.00 2.40
484 485 2.617308 GACACTGATCCGGACGATTCTA 59.383 50.000 6.12 0.00 0.00 2.10
485 486 3.021695 ACACTGATCCGGACGATTCTAA 58.978 45.455 6.12 0.00 0.00 2.10
486 487 3.446161 ACACTGATCCGGACGATTCTAAA 59.554 43.478 6.12 0.00 0.00 1.85
487 488 4.099573 ACACTGATCCGGACGATTCTAAAT 59.900 41.667 6.12 0.00 0.00 1.40
488 489 4.681942 CACTGATCCGGACGATTCTAAATC 59.318 45.833 6.12 0.00 0.00 2.17
489 490 3.897325 TGATCCGGACGATTCTAAATCG 58.103 45.455 6.12 17.78 46.02 3.34
490 491 2.129823 TCCGGACGATTCTAAATCGC 57.870 50.000 18.94 12.66 44.60 4.58
491 492 1.406180 TCCGGACGATTCTAAATCGCA 59.594 47.619 18.94 0.00 44.60 5.10
492 493 2.159212 TCCGGACGATTCTAAATCGCAA 60.159 45.455 18.94 1.59 44.60 4.85
493 494 2.605818 CCGGACGATTCTAAATCGCAAA 59.394 45.455 18.94 0.00 44.60 3.68
494 495 3.543460 CCGGACGATTCTAAATCGCAAAC 60.543 47.826 18.94 9.92 44.60 2.93
495 496 3.543460 CGGACGATTCTAAATCGCAAACC 60.543 47.826 18.94 15.53 44.60 3.27
496 497 3.543460 GGACGATTCTAAATCGCAAACCG 60.543 47.826 18.94 0.00 44.60 4.44
497 498 2.350498 ACGATTCTAAATCGCAAACCGG 59.650 45.455 18.94 0.00 44.60 5.28
498 499 2.605818 CGATTCTAAATCGCAAACCGGA 59.394 45.455 9.46 0.00 37.59 5.14
499 500 3.247648 CGATTCTAAATCGCAAACCGGAT 59.752 43.478 9.46 0.00 37.59 4.18
500 501 4.446385 CGATTCTAAATCGCAAACCGGATA 59.554 41.667 9.46 0.00 37.59 2.59
501 502 5.611844 CGATTCTAAATCGCAAACCGGATAC 60.612 44.000 9.46 0.00 37.59 2.24
520 521 7.173863 GGATACGTATTTACACTGAATGGTG 57.826 40.000 9.92 0.00 42.34 4.17
521 522 6.202188 GGATACGTATTTACACTGAATGGTGG 59.798 42.308 9.92 0.00 41.09 4.61
522 523 5.155278 ACGTATTTACACTGAATGGTGGA 57.845 39.130 0.00 0.00 41.09 4.02
523 524 5.175859 ACGTATTTACACTGAATGGTGGAG 58.824 41.667 0.00 0.00 41.09 3.86
524 525 4.034048 CGTATTTACACTGAATGGTGGAGC 59.966 45.833 0.00 0.00 41.09 4.70
525 526 3.788227 TTTACACTGAATGGTGGAGCT 57.212 42.857 0.00 0.00 41.09 4.09
526 527 2.768253 TACACTGAATGGTGGAGCTG 57.232 50.000 0.00 0.00 41.09 4.24
527 528 0.767375 ACACTGAATGGTGGAGCTGT 59.233 50.000 0.00 0.00 41.09 4.40
528 529 1.271054 ACACTGAATGGTGGAGCTGTC 60.271 52.381 0.00 0.00 41.09 3.51
529 530 1.059098 ACTGAATGGTGGAGCTGTCA 58.941 50.000 0.00 0.00 0.00 3.58
530 531 1.002888 ACTGAATGGTGGAGCTGTCAG 59.997 52.381 0.00 0.00 38.72 3.51
531 532 1.002888 CTGAATGGTGGAGCTGTCAGT 59.997 52.381 0.93 0.00 0.00 3.41
532 533 1.421268 TGAATGGTGGAGCTGTCAGTT 59.579 47.619 0.93 0.00 0.00 3.16
533 534 1.808945 GAATGGTGGAGCTGTCAGTTG 59.191 52.381 0.93 0.00 0.00 3.16
534 535 0.037303 ATGGTGGAGCTGTCAGTTGG 59.963 55.000 0.93 0.00 0.00 3.77
535 536 1.344953 TGGTGGAGCTGTCAGTTGGT 61.345 55.000 0.93 0.00 0.00 3.67
536 537 0.886490 GGTGGAGCTGTCAGTTGGTG 60.886 60.000 0.93 0.00 0.00 4.17
537 538 1.227943 TGGAGCTGTCAGTTGGTGC 60.228 57.895 0.93 0.00 0.00 5.01
538 539 1.227943 GGAGCTGTCAGTTGGTGCA 60.228 57.895 0.93 0.00 0.00 4.57
539 540 1.233285 GGAGCTGTCAGTTGGTGCAG 61.233 60.000 0.93 0.00 34.94 4.41
540 541 0.533755 GAGCTGTCAGTTGGTGCAGT 60.534 55.000 0.93 0.00 34.56 4.40
541 542 0.107017 AGCTGTCAGTTGGTGCAGTT 60.107 50.000 0.93 0.00 34.56 3.16
542 543 0.308993 GCTGTCAGTTGGTGCAGTTC 59.691 55.000 0.93 0.00 34.56 3.01
543 544 1.959042 CTGTCAGTTGGTGCAGTTCT 58.041 50.000 0.00 0.00 0.00 3.01
544 545 2.806745 GCTGTCAGTTGGTGCAGTTCTA 60.807 50.000 0.93 0.00 34.56 2.10
545 546 3.466836 CTGTCAGTTGGTGCAGTTCTAA 58.533 45.455 0.00 0.00 0.00 2.10
546 547 3.466836 TGTCAGTTGGTGCAGTTCTAAG 58.533 45.455 0.00 0.00 0.00 2.18
547 548 2.224314 GTCAGTTGGTGCAGTTCTAAGC 59.776 50.000 0.00 0.00 0.00 3.09
548 549 2.158827 TCAGTTGGTGCAGTTCTAAGCA 60.159 45.455 0.00 0.00 38.65 3.91
549 550 2.618241 CAGTTGGTGCAGTTCTAAGCAA 59.382 45.455 0.00 0.00 43.20 3.91
550 551 3.066621 CAGTTGGTGCAGTTCTAAGCAAA 59.933 43.478 0.00 0.00 43.20 3.68
551 552 3.316308 AGTTGGTGCAGTTCTAAGCAAAG 59.684 43.478 0.00 0.00 43.20 2.77
552 553 2.930950 TGGTGCAGTTCTAAGCAAAGT 58.069 42.857 0.00 0.00 43.20 2.66
553 554 2.618241 TGGTGCAGTTCTAAGCAAAGTG 59.382 45.455 0.00 0.00 43.20 3.16
554 555 2.618709 GGTGCAGTTCTAAGCAAAGTGT 59.381 45.455 0.00 0.00 43.20 3.55
555 556 3.304057 GGTGCAGTTCTAAGCAAAGTGTC 60.304 47.826 0.00 0.00 43.20 3.67
556 557 2.543848 TGCAGTTCTAAGCAAAGTGTCG 59.456 45.455 0.00 0.00 37.90 4.35
557 558 2.544267 GCAGTTCTAAGCAAAGTGTCGT 59.456 45.455 0.00 0.00 31.13 4.34
558 559 3.604772 GCAGTTCTAAGCAAAGTGTCGTG 60.605 47.826 0.00 0.00 31.13 4.35
559 560 3.059597 CAGTTCTAAGCAAAGTGTCGTGG 60.060 47.826 0.00 0.00 0.00 4.94
560 561 1.508632 TCTAAGCAAAGTGTCGTGGC 58.491 50.000 0.00 0.00 0.00 5.01
561 562 0.163788 CTAAGCAAAGTGTCGTGGCG 59.836 55.000 0.00 0.00 0.00 5.69
562 563 1.225376 TAAGCAAAGTGTCGTGGCGG 61.225 55.000 0.00 0.00 0.00 6.13
563 564 4.025401 GCAAAGTGTCGTGGCGGG 62.025 66.667 0.00 0.00 0.00 6.13
564 565 2.280524 CAAAGTGTCGTGGCGGGA 60.281 61.111 0.00 0.00 0.00 5.14
565 566 1.671054 CAAAGTGTCGTGGCGGGAT 60.671 57.895 0.00 0.00 0.00 3.85
566 567 1.375523 AAAGTGTCGTGGCGGGATC 60.376 57.895 0.00 0.00 0.00 3.36
567 568 1.827399 AAAGTGTCGTGGCGGGATCT 61.827 55.000 0.00 0.00 0.00 2.75
568 569 0.968901 AAGTGTCGTGGCGGGATCTA 60.969 55.000 0.00 0.00 0.00 1.98
569 570 1.226888 GTGTCGTGGCGGGATCTAC 60.227 63.158 0.00 0.00 0.00 2.59
570 571 2.025727 GTCGTGGCGGGATCTACG 59.974 66.667 6.08 6.08 37.85 3.51
571 572 2.438975 TCGTGGCGGGATCTACGT 60.439 61.111 10.98 0.00 37.74 3.57
572 573 2.278596 CGTGGCGGGATCTACGTG 60.279 66.667 0.00 0.00 0.00 4.49
573 574 2.890371 GTGGCGGGATCTACGTGT 59.110 61.111 0.00 0.00 0.00 4.49
574 575 1.518572 GTGGCGGGATCTACGTGTG 60.519 63.158 0.00 0.00 0.00 3.82
575 576 1.679641 TGGCGGGATCTACGTGTGA 60.680 57.895 0.00 0.00 0.00 3.58
576 577 1.252215 TGGCGGGATCTACGTGTGAA 61.252 55.000 0.00 0.00 0.00 3.18
577 578 0.527817 GGCGGGATCTACGTGTGAAG 60.528 60.000 0.00 0.00 0.00 3.02
578 579 1.146358 GCGGGATCTACGTGTGAAGC 61.146 60.000 0.00 0.00 0.00 3.86
579 580 0.866061 CGGGATCTACGTGTGAAGCG 60.866 60.000 0.00 0.00 0.00 4.68
580 581 0.527817 GGGATCTACGTGTGAAGCGG 60.528 60.000 0.00 0.00 0.00 5.52
581 582 0.454600 GGATCTACGTGTGAAGCGGA 59.545 55.000 0.00 0.00 0.00 5.54
582 583 1.534175 GGATCTACGTGTGAAGCGGAG 60.534 57.143 0.00 0.00 41.34 4.63
583 584 1.132643 GATCTACGTGTGAAGCGGAGT 59.867 52.381 0.00 0.00 40.84 3.85
584 585 1.812235 TCTACGTGTGAAGCGGAGTA 58.188 50.000 0.00 0.00 40.84 2.59
585 586 1.466167 TCTACGTGTGAAGCGGAGTAC 59.534 52.381 0.00 0.00 40.84 2.73
586 587 1.198408 CTACGTGTGAAGCGGAGTACA 59.802 52.381 0.00 0.00 35.71 2.90
587 588 0.601558 ACGTGTGAAGCGGAGTACAT 59.398 50.000 0.00 0.00 0.00 2.29
588 589 1.814394 ACGTGTGAAGCGGAGTACATA 59.186 47.619 0.00 0.00 0.00 2.29
589 590 2.159421 ACGTGTGAAGCGGAGTACATAG 60.159 50.000 0.00 0.00 0.00 2.23
590 591 2.194271 GTGTGAAGCGGAGTACATAGC 58.806 52.381 0.00 0.00 0.00 2.97
591 592 2.100197 TGTGAAGCGGAGTACATAGCT 58.900 47.619 0.00 0.00 42.35 3.32
592 593 2.159240 TGTGAAGCGGAGTACATAGCTG 60.159 50.000 9.22 0.00 40.17 4.24
593 594 1.202417 TGAAGCGGAGTACATAGCTGC 60.202 52.381 9.22 8.24 40.17 5.25
594 595 1.067821 GAAGCGGAGTACATAGCTGCT 59.932 52.381 7.57 7.57 45.57 4.24
595 596 1.115467 AGCGGAGTACATAGCTGCTT 58.885 50.000 7.79 0.00 41.19 3.91
596 597 1.067821 AGCGGAGTACATAGCTGCTTC 59.932 52.381 7.79 0.00 41.19 3.86
597 598 1.759994 CGGAGTACATAGCTGCTTCG 58.240 55.000 7.79 1.50 0.00 3.79
598 599 1.600663 CGGAGTACATAGCTGCTTCGG 60.601 57.143 7.79 0.00 0.00 4.30
599 600 1.681793 GGAGTACATAGCTGCTTCGGA 59.318 52.381 7.79 0.00 0.00 4.55
600 601 2.100916 GGAGTACATAGCTGCTTCGGAA 59.899 50.000 7.79 0.00 0.00 4.30
601 602 3.376540 GAGTACATAGCTGCTTCGGAAG 58.623 50.000 7.79 13.39 0.00 3.46
612 613 2.995466 CTTCGGAAGCAGCAAATGAA 57.005 45.000 4.57 0.00 0.00 2.57
613 614 2.860062 CTTCGGAAGCAGCAAATGAAG 58.140 47.619 4.57 0.00 0.00 3.02
614 615 1.167851 TCGGAAGCAGCAAATGAAGG 58.832 50.000 0.00 0.00 0.00 3.46
615 616 1.167851 CGGAAGCAGCAAATGAAGGA 58.832 50.000 0.00 0.00 0.00 3.36
616 617 1.131883 CGGAAGCAGCAAATGAAGGAG 59.868 52.381 0.00 0.00 0.00 3.69
617 618 2.165998 GGAAGCAGCAAATGAAGGAGT 58.834 47.619 0.00 0.00 0.00 3.85
618 619 2.163211 GGAAGCAGCAAATGAAGGAGTC 59.837 50.000 0.00 0.00 0.00 3.36
619 620 2.875094 AGCAGCAAATGAAGGAGTCT 57.125 45.000 0.00 0.00 0.00 3.24
620 621 2.434428 AGCAGCAAATGAAGGAGTCTG 58.566 47.619 0.00 0.00 0.00 3.51
621 622 1.471684 GCAGCAAATGAAGGAGTCTGG 59.528 52.381 0.00 0.00 0.00 3.86
622 623 2.877300 GCAGCAAATGAAGGAGTCTGGA 60.877 50.000 0.00 0.00 0.00 3.86
623 624 3.618351 CAGCAAATGAAGGAGTCTGGAT 58.382 45.455 0.00 0.00 0.00 3.41
624 625 3.377485 CAGCAAATGAAGGAGTCTGGATG 59.623 47.826 0.00 0.00 0.00 3.51
625 626 3.265221 AGCAAATGAAGGAGTCTGGATGA 59.735 43.478 0.00 0.00 0.00 2.92
626 627 4.012374 GCAAATGAAGGAGTCTGGATGAA 58.988 43.478 0.00 0.00 0.00 2.57
627 628 4.096081 GCAAATGAAGGAGTCTGGATGAAG 59.904 45.833 0.00 0.00 0.00 3.02
628 629 4.500499 AATGAAGGAGTCTGGATGAAGG 57.500 45.455 0.00 0.00 0.00 3.46
629 630 3.190383 TGAAGGAGTCTGGATGAAGGA 57.810 47.619 0.00 0.00 0.00 3.36
630 631 3.102972 TGAAGGAGTCTGGATGAAGGAG 58.897 50.000 0.00 0.00 0.00 3.69
631 632 2.938428 AGGAGTCTGGATGAAGGAGT 57.062 50.000 0.00 0.00 0.00 3.85
632 633 3.197927 AGGAGTCTGGATGAAGGAGTT 57.802 47.619 0.00 0.00 0.00 3.01
633 634 3.103742 AGGAGTCTGGATGAAGGAGTTC 58.896 50.000 0.00 0.00 0.00 3.01
634 635 2.834549 GGAGTCTGGATGAAGGAGTTCA 59.165 50.000 0.00 0.00 46.81 3.18
687 688 1.477553 GGGCATTGGAAGCAGATTGA 58.522 50.000 0.00 0.00 0.00 2.57
1067 1076 2.040813 ACATGCACTCAGAAACCTCCAT 59.959 45.455 0.00 0.00 0.00 3.41
1379 1388 2.354259 GTTCTTAGCATGTGCAGAGCT 58.646 47.619 11.60 11.60 45.16 4.09
1432 1442 4.214310 TGGATGTGTTCATTGAAAGTGGT 58.786 39.130 0.00 0.00 34.06 4.16
1565 1575 6.254480 TGTGTGCACATGCTATTTATTTACG 58.746 36.000 24.69 0.00 42.66 3.18
1872 1884 8.725148 GTTGATCATCCATTGTAGGATTACATC 58.275 37.037 0.00 0.00 46.12 3.06
1873 1885 7.397221 TGATCATCCATTGTAGGATTACATCC 58.603 38.462 0.00 0.00 46.12 3.51
2329 2428 5.122707 TGAATTGGTGGCTGGTATGAATA 57.877 39.130 0.00 0.00 0.00 1.75
2960 3095 8.765219 CCAGTGTTACTTATGTTATAGTGATGC 58.235 37.037 2.30 0.00 0.00 3.91
2961 3096 9.534565 CAGTGTTACTTATGTTATAGTGATGCT 57.465 33.333 0.00 0.00 0.00 3.79
3132 3308 2.365105 CCCCGAGCCACCCTAGAA 60.365 66.667 0.00 0.00 0.00 2.10
3166 3342 0.540365 TTAGGTGGTTCCGTCGACCT 60.540 55.000 10.58 7.61 45.72 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
337 338 0.539051 GTCCAGTGATCCACTCCTGG 59.461 60.000 0.00 0.00 43.43 4.45
338 339 1.206610 CTGTCCAGTGATCCACTCCTG 59.793 57.143 0.00 0.00 43.43 3.86
339 340 1.566211 CTGTCCAGTGATCCACTCCT 58.434 55.000 0.00 0.00 43.43 3.69
340 341 0.107945 GCTGTCCAGTGATCCACTCC 60.108 60.000 0.00 0.00 43.43 3.85
341 342 0.459237 CGCTGTCCAGTGATCCACTC 60.459 60.000 1.60 0.00 43.43 3.51
342 343 1.593787 CGCTGTCCAGTGATCCACT 59.406 57.895 1.60 0.00 46.51 4.00
343 344 1.448540 CCGCTGTCCAGTGATCCAC 60.449 63.158 9.35 0.00 41.24 4.02
344 345 1.888436 GACCGCTGTCCAGTGATCCA 61.888 60.000 9.35 0.00 41.24 3.41
345 346 1.153549 GACCGCTGTCCAGTGATCC 60.154 63.158 9.35 0.00 41.24 3.36
346 347 0.037326 TTGACCGCTGTCCAGTGATC 60.037 55.000 9.35 2.31 41.01 2.92
347 348 0.036952 CTTGACCGCTGTCCAGTGAT 60.037 55.000 9.35 0.00 41.01 3.06
348 349 1.112916 TCTTGACCGCTGTCCAGTGA 61.113 55.000 9.35 0.00 41.01 3.41
349 350 0.249868 TTCTTGACCGCTGTCCAGTG 60.250 55.000 5.77 0.83 41.01 3.66
350 351 0.249911 GTTCTTGACCGCTGTCCAGT 60.250 55.000 5.77 0.00 41.01 4.00
351 352 0.249868 TGTTCTTGACCGCTGTCCAG 60.250 55.000 5.77 4.45 41.01 3.86
352 353 0.396435 ATGTTCTTGACCGCTGTCCA 59.604 50.000 5.77 0.00 41.01 4.02
353 354 1.079503 GATGTTCTTGACCGCTGTCC 58.920 55.000 5.77 0.00 41.01 4.02
354 355 1.079503 GGATGTTCTTGACCGCTGTC 58.920 55.000 0.64 0.64 42.12 3.51
355 356 0.687354 AGGATGTTCTTGACCGCTGT 59.313 50.000 0.00 0.00 0.00 4.40
356 357 1.081892 CAGGATGTTCTTGACCGCTG 58.918 55.000 0.00 0.00 0.00 5.18
357 358 0.976641 TCAGGATGTTCTTGACCGCT 59.023 50.000 0.00 0.00 37.40 5.52
358 359 1.808411 TTCAGGATGTTCTTGACCGC 58.192 50.000 0.00 0.00 31.94 5.68
359 360 4.332819 GGTATTTCAGGATGTTCTTGACCG 59.667 45.833 0.00 0.00 31.94 4.79
360 361 5.355350 CAGGTATTTCAGGATGTTCTTGACC 59.645 44.000 0.00 0.00 31.94 4.02
361 362 6.173339 TCAGGTATTTCAGGATGTTCTTGAC 58.827 40.000 0.00 0.00 31.94 3.18
362 363 6.373005 TCAGGTATTTCAGGATGTTCTTGA 57.627 37.500 0.00 0.00 37.40 3.02
363 364 7.452880 TTTCAGGTATTTCAGGATGTTCTTG 57.547 36.000 0.00 0.00 37.40 3.02
364 365 7.177392 CCTTTTCAGGTATTTCAGGATGTTCTT 59.823 37.037 0.00 0.00 34.29 2.52
365 366 6.660949 CCTTTTCAGGTATTTCAGGATGTTCT 59.339 38.462 0.00 0.00 34.29 3.01
366 367 6.659242 TCCTTTTCAGGTATTTCAGGATGTTC 59.341 38.462 0.00 0.00 41.69 3.18
367 368 6.434340 GTCCTTTTCAGGTATTTCAGGATGTT 59.566 38.462 0.00 0.00 41.69 2.71
368 369 5.946377 GTCCTTTTCAGGTATTTCAGGATGT 59.054 40.000 0.00 0.00 41.69 3.06
369 370 6.183347 AGTCCTTTTCAGGTATTTCAGGATG 58.817 40.000 0.00 0.00 41.69 3.51
370 371 6.394345 AGTCCTTTTCAGGTATTTCAGGAT 57.606 37.500 0.00 0.00 41.69 3.24
371 372 5.843019 AGTCCTTTTCAGGTATTTCAGGA 57.157 39.130 0.00 0.00 41.69 3.86
372 373 6.599638 CCTTAGTCCTTTTCAGGTATTTCAGG 59.400 42.308 0.00 0.00 41.69 3.86
373 374 7.394816 TCCTTAGTCCTTTTCAGGTATTTCAG 58.605 38.462 0.00 0.00 41.69 3.02
374 375 7.324388 TCCTTAGTCCTTTTCAGGTATTTCA 57.676 36.000 0.00 0.00 41.69 2.69
376 377 9.853177 CATATCCTTAGTCCTTTTCAGGTATTT 57.147 33.333 0.00 0.00 41.69 1.40
377 378 9.004231 ACATATCCTTAGTCCTTTTCAGGTATT 57.996 33.333 0.00 0.00 41.69 1.89
378 379 8.568617 ACATATCCTTAGTCCTTTTCAGGTAT 57.431 34.615 0.00 0.00 41.69 2.73
379 380 7.989947 ACATATCCTTAGTCCTTTTCAGGTA 57.010 36.000 0.00 0.00 41.69 3.08
380 381 6.893020 ACATATCCTTAGTCCTTTTCAGGT 57.107 37.500 0.00 0.00 41.69 4.00
381 382 8.049721 AGAAACATATCCTTAGTCCTTTTCAGG 58.950 37.037 0.00 0.00 42.50 3.86
382 383 9.103861 GAGAAACATATCCTTAGTCCTTTTCAG 57.896 37.037 0.00 0.00 0.00 3.02
383 384 8.602424 TGAGAAACATATCCTTAGTCCTTTTCA 58.398 33.333 0.00 0.00 0.00 2.69
384 385 9.620259 ATGAGAAACATATCCTTAGTCCTTTTC 57.380 33.333 0.00 0.00 37.46 2.29
385 386 9.981460 AATGAGAAACATATCCTTAGTCCTTTT 57.019 29.630 0.00 0.00 38.38 2.27
386 387 9.981460 AAATGAGAAACATATCCTTAGTCCTTT 57.019 29.630 0.00 0.00 38.38 3.11
394 395 8.506083 ACCTCCATAAATGAGAAACATATCCTT 58.494 33.333 0.00 0.00 38.38 3.36
395 396 7.941238 CACCTCCATAAATGAGAAACATATCCT 59.059 37.037 0.00 0.00 38.38 3.24
396 397 7.939039 TCACCTCCATAAATGAGAAACATATCC 59.061 37.037 0.00 0.00 38.38 2.59
397 398 8.778358 GTCACCTCCATAAATGAGAAACATATC 58.222 37.037 0.00 0.00 38.38 1.63
398 399 8.274322 TGTCACCTCCATAAATGAGAAACATAT 58.726 33.333 0.00 0.00 38.38 1.78
399 400 7.629157 TGTCACCTCCATAAATGAGAAACATA 58.371 34.615 0.00 0.00 38.38 2.29
400 401 6.484288 TGTCACCTCCATAAATGAGAAACAT 58.516 36.000 0.00 0.00 41.45 2.71
401 402 5.875224 TGTCACCTCCATAAATGAGAAACA 58.125 37.500 0.00 0.00 0.00 2.83
402 403 6.817765 TTGTCACCTCCATAAATGAGAAAC 57.182 37.500 0.00 0.00 0.00 2.78
403 404 7.230747 TCTTTGTCACCTCCATAAATGAGAAA 58.769 34.615 0.00 0.00 34.37 2.52
404 405 6.778821 TCTTTGTCACCTCCATAAATGAGAA 58.221 36.000 0.00 0.00 0.00 2.87
405 406 6.373005 TCTTTGTCACCTCCATAAATGAGA 57.627 37.500 0.00 0.00 0.00 3.27
406 407 5.065731 GCTCTTTGTCACCTCCATAAATGAG 59.934 44.000 0.00 0.00 0.00 2.90
407 408 4.943705 GCTCTTTGTCACCTCCATAAATGA 59.056 41.667 0.00 0.00 0.00 2.57
408 409 4.946157 AGCTCTTTGTCACCTCCATAAATG 59.054 41.667 0.00 0.00 0.00 2.32
409 410 5.184892 AGCTCTTTGTCACCTCCATAAAT 57.815 39.130 0.00 0.00 0.00 1.40
410 411 4.041567 TGAGCTCTTTGTCACCTCCATAAA 59.958 41.667 16.19 0.00 0.00 1.40
411 412 3.582647 TGAGCTCTTTGTCACCTCCATAA 59.417 43.478 16.19 0.00 0.00 1.90
412 413 3.173151 TGAGCTCTTTGTCACCTCCATA 58.827 45.455 16.19 0.00 0.00 2.74
413 414 1.980765 TGAGCTCTTTGTCACCTCCAT 59.019 47.619 16.19 0.00 0.00 3.41
414 415 1.423584 TGAGCTCTTTGTCACCTCCA 58.576 50.000 16.19 0.00 0.00 3.86
415 416 2.626840 GATGAGCTCTTTGTCACCTCC 58.373 52.381 16.19 0.00 0.00 4.30
416 417 2.266554 CGATGAGCTCTTTGTCACCTC 58.733 52.381 16.19 0.00 0.00 3.85
417 418 1.620819 ACGATGAGCTCTTTGTCACCT 59.379 47.619 16.19 0.00 0.00 4.00
418 419 2.086054 ACGATGAGCTCTTTGTCACC 57.914 50.000 16.19 0.00 0.00 4.02
419 420 4.090642 CACTTACGATGAGCTCTTTGTCAC 59.909 45.833 22.29 1.16 0.00 3.67
420 421 4.237724 CACTTACGATGAGCTCTTTGTCA 58.762 43.478 22.29 13.10 0.00 3.58
421 422 3.614616 CCACTTACGATGAGCTCTTTGTC 59.385 47.826 22.29 11.12 0.00 3.18
422 423 3.006967 ACCACTTACGATGAGCTCTTTGT 59.993 43.478 22.28 22.28 0.00 2.83
423 424 3.589988 ACCACTTACGATGAGCTCTTTG 58.410 45.455 16.19 14.91 0.00 2.77
424 425 3.963428 ACCACTTACGATGAGCTCTTT 57.037 42.857 16.19 1.95 0.00 2.52
425 426 3.963428 AACCACTTACGATGAGCTCTT 57.037 42.857 16.19 8.82 0.00 2.85
426 427 4.373348 GTAACCACTTACGATGAGCTCT 57.627 45.455 16.19 0.00 0.00 4.09
436 437 4.708601 CTTGCATCAACGTAACCACTTAC 58.291 43.478 0.00 0.00 0.00 2.34
437 438 3.187637 GCTTGCATCAACGTAACCACTTA 59.812 43.478 0.00 0.00 0.00 2.24
438 439 2.031157 GCTTGCATCAACGTAACCACTT 60.031 45.455 0.00 0.00 0.00 3.16
439 440 1.535462 GCTTGCATCAACGTAACCACT 59.465 47.619 0.00 0.00 0.00 4.00
440 441 1.535462 AGCTTGCATCAACGTAACCAC 59.465 47.619 0.00 0.00 0.00 4.16
441 442 1.890876 AGCTTGCATCAACGTAACCA 58.109 45.000 0.00 0.00 0.00 3.67
442 443 2.979813 CAAAGCTTGCATCAACGTAACC 59.020 45.455 0.00 0.00 0.00 2.85
443 444 3.664025 GTCAAAGCTTGCATCAACGTAAC 59.336 43.478 0.00 0.00 0.00 2.50
444 445 3.313803 TGTCAAAGCTTGCATCAACGTAA 59.686 39.130 0.00 0.00 0.00 3.18
445 446 2.875317 TGTCAAAGCTTGCATCAACGTA 59.125 40.909 0.00 0.00 0.00 3.57
446 447 1.675483 TGTCAAAGCTTGCATCAACGT 59.325 42.857 0.00 0.00 0.00 3.99
447 448 2.046313 GTGTCAAAGCTTGCATCAACG 58.954 47.619 0.00 0.00 0.00 4.10
448 449 3.047796 CAGTGTCAAAGCTTGCATCAAC 58.952 45.455 0.00 0.00 0.00 3.18
449 450 2.950975 TCAGTGTCAAAGCTTGCATCAA 59.049 40.909 0.00 0.00 0.00 2.57
450 451 2.574450 TCAGTGTCAAAGCTTGCATCA 58.426 42.857 0.00 0.00 0.00 3.07
451 452 3.427233 GGATCAGTGTCAAAGCTTGCATC 60.427 47.826 0.00 0.00 0.00 3.91
452 453 2.490903 GGATCAGTGTCAAAGCTTGCAT 59.509 45.455 0.00 0.00 0.00 3.96
453 454 1.881973 GGATCAGTGTCAAAGCTTGCA 59.118 47.619 0.00 0.00 0.00 4.08
454 455 1.135859 CGGATCAGTGTCAAAGCTTGC 60.136 52.381 0.00 0.00 0.00 4.01
455 456 1.466167 CCGGATCAGTGTCAAAGCTTG 59.534 52.381 0.00 0.00 0.00 4.01
456 457 1.347707 TCCGGATCAGTGTCAAAGCTT 59.652 47.619 0.00 0.00 0.00 3.74
457 458 0.976641 TCCGGATCAGTGTCAAAGCT 59.023 50.000 0.00 0.00 0.00 3.74
458 459 1.079503 GTCCGGATCAGTGTCAAAGC 58.920 55.000 7.81 0.00 0.00 3.51
459 460 1.067846 TCGTCCGGATCAGTGTCAAAG 60.068 52.381 7.81 0.00 0.00 2.77
460 461 0.963225 TCGTCCGGATCAGTGTCAAA 59.037 50.000 7.81 0.00 0.00 2.69
461 462 1.182667 ATCGTCCGGATCAGTGTCAA 58.817 50.000 7.81 0.00 0.00 3.18
462 463 1.134367 GAATCGTCCGGATCAGTGTCA 59.866 52.381 7.81 0.00 33.02 3.58
463 464 1.405821 AGAATCGTCCGGATCAGTGTC 59.594 52.381 7.81 0.78 33.02 3.67
464 465 1.475403 AGAATCGTCCGGATCAGTGT 58.525 50.000 7.81 0.00 33.02 3.55
465 466 3.710326 TTAGAATCGTCCGGATCAGTG 57.290 47.619 7.81 0.00 33.02 3.66
466 467 4.556898 CGATTTAGAATCGTCCGGATCAGT 60.557 45.833 7.81 0.00 36.84 3.41
467 468 3.914966 CGATTTAGAATCGTCCGGATCAG 59.085 47.826 7.81 2.33 36.84 2.90
468 469 3.855895 GCGATTTAGAATCGTCCGGATCA 60.856 47.826 20.13 0.00 42.90 2.92
469 470 2.662156 GCGATTTAGAATCGTCCGGATC 59.338 50.000 20.13 0.00 42.90 3.36
470 471 2.035449 TGCGATTTAGAATCGTCCGGAT 59.965 45.455 20.13 0.00 42.90 4.18
471 472 1.406180 TGCGATTTAGAATCGTCCGGA 59.594 47.619 20.13 0.00 42.90 5.14
472 473 1.847818 TGCGATTTAGAATCGTCCGG 58.152 50.000 20.13 0.00 42.90 5.14
473 474 3.543460 GGTTTGCGATTTAGAATCGTCCG 60.543 47.826 20.13 1.21 42.90 4.79
474 475 3.543460 CGGTTTGCGATTTAGAATCGTCC 60.543 47.826 20.13 16.07 42.90 4.79
475 476 3.543460 CCGGTTTGCGATTTAGAATCGTC 60.543 47.826 20.13 14.23 42.90 4.20
476 477 2.350498 CCGGTTTGCGATTTAGAATCGT 59.650 45.455 20.13 0.00 42.90 3.73
477 478 2.605818 TCCGGTTTGCGATTTAGAATCG 59.394 45.455 16.33 16.33 43.72 3.34
478 479 4.813296 ATCCGGTTTGCGATTTAGAATC 57.187 40.909 0.00 0.00 0.00 2.52
479 480 4.210537 CGTATCCGGTTTGCGATTTAGAAT 59.789 41.667 0.00 0.00 0.00 2.40
480 481 3.552699 CGTATCCGGTTTGCGATTTAGAA 59.447 43.478 0.00 0.00 0.00 2.10
481 482 3.117794 CGTATCCGGTTTGCGATTTAGA 58.882 45.455 0.00 0.00 0.00 2.10
482 483 2.861935 ACGTATCCGGTTTGCGATTTAG 59.138 45.455 20.03 0.00 38.78 1.85
483 484 2.891112 ACGTATCCGGTTTGCGATTTA 58.109 42.857 20.03 0.00 38.78 1.40
484 485 1.729284 ACGTATCCGGTTTGCGATTT 58.271 45.000 20.03 0.51 38.78 2.17
485 486 2.582728 TACGTATCCGGTTTGCGATT 57.417 45.000 20.03 5.64 38.78 3.34
486 487 2.806608 ATACGTATCCGGTTTGCGAT 57.193 45.000 20.03 9.40 38.78 4.58
487 488 2.582728 AATACGTATCCGGTTTGCGA 57.417 45.000 20.03 7.91 38.78 5.10
488 489 3.551082 TGTAAATACGTATCCGGTTTGCG 59.449 43.478 8.86 13.85 38.78 4.85
489 490 4.567959 AGTGTAAATACGTATCCGGTTTGC 59.432 41.667 8.86 4.30 38.78 3.68
490 491 5.806502 TCAGTGTAAATACGTATCCGGTTTG 59.193 40.000 8.86 4.86 38.78 2.93
491 492 5.964758 TCAGTGTAAATACGTATCCGGTTT 58.035 37.500 8.86 2.46 38.78 3.27
492 493 5.581126 TCAGTGTAAATACGTATCCGGTT 57.419 39.130 8.86 1.98 38.78 4.44
493 494 5.581126 TTCAGTGTAAATACGTATCCGGT 57.419 39.130 8.86 0.00 38.78 5.28
494 495 5.404366 CCATTCAGTGTAAATACGTATCCGG 59.596 44.000 8.86 0.00 38.78 5.14
495 496 5.981315 ACCATTCAGTGTAAATACGTATCCG 59.019 40.000 8.86 0.00 40.83 4.18
496 497 6.202188 CCACCATTCAGTGTAAATACGTATCC 59.798 42.308 8.86 0.93 35.93 2.59
497 498 6.982141 TCCACCATTCAGTGTAAATACGTATC 59.018 38.462 8.86 0.00 35.93 2.24
498 499 6.880484 TCCACCATTCAGTGTAAATACGTAT 58.120 36.000 1.14 1.14 35.93 3.06
499 500 6.283544 TCCACCATTCAGTGTAAATACGTA 57.716 37.500 0.00 0.00 35.93 3.57
500 501 5.155278 TCCACCATTCAGTGTAAATACGT 57.845 39.130 0.00 0.00 35.93 3.57
501 502 4.034048 GCTCCACCATTCAGTGTAAATACG 59.966 45.833 0.00 0.00 35.93 3.06
502 503 5.065218 CAGCTCCACCATTCAGTGTAAATAC 59.935 44.000 0.00 0.00 35.93 1.89
503 504 5.185454 CAGCTCCACCATTCAGTGTAAATA 58.815 41.667 0.00 0.00 35.93 1.40
504 505 4.012374 CAGCTCCACCATTCAGTGTAAAT 58.988 43.478 0.00 0.00 35.93 1.40
505 506 3.181445 ACAGCTCCACCATTCAGTGTAAA 60.181 43.478 0.00 0.00 35.93 2.01
506 507 2.371841 ACAGCTCCACCATTCAGTGTAA 59.628 45.455 0.00 0.00 35.93 2.41
507 508 1.977854 ACAGCTCCACCATTCAGTGTA 59.022 47.619 0.00 0.00 35.93 2.90
508 509 0.767375 ACAGCTCCACCATTCAGTGT 59.233 50.000 0.00 0.00 35.93 3.55
509 510 1.271001 TGACAGCTCCACCATTCAGTG 60.271 52.381 0.00 0.00 37.51 3.66
510 511 1.002888 CTGACAGCTCCACCATTCAGT 59.997 52.381 0.00 0.00 0.00 3.41
511 512 1.002888 ACTGACAGCTCCACCATTCAG 59.997 52.381 1.25 0.00 37.17 3.02
512 513 1.059098 ACTGACAGCTCCACCATTCA 58.941 50.000 1.25 0.00 0.00 2.57
513 514 1.808945 CAACTGACAGCTCCACCATTC 59.191 52.381 1.25 0.00 0.00 2.67
514 515 1.546323 CCAACTGACAGCTCCACCATT 60.546 52.381 1.25 0.00 0.00 3.16
515 516 0.037303 CCAACTGACAGCTCCACCAT 59.963 55.000 1.25 0.00 0.00 3.55
516 517 1.344953 ACCAACTGACAGCTCCACCA 61.345 55.000 1.25 0.00 0.00 4.17
517 518 0.886490 CACCAACTGACAGCTCCACC 60.886 60.000 1.25 0.00 0.00 4.61
518 519 1.510480 GCACCAACTGACAGCTCCAC 61.510 60.000 1.25 0.00 0.00 4.02
519 520 1.227943 GCACCAACTGACAGCTCCA 60.228 57.895 1.25 0.00 0.00 3.86
520 521 1.227943 TGCACCAACTGACAGCTCC 60.228 57.895 1.25 0.00 0.00 4.70
521 522 0.533755 ACTGCACCAACTGACAGCTC 60.534 55.000 1.25 0.00 33.35 4.09
522 523 0.107017 AACTGCACCAACTGACAGCT 60.107 50.000 1.25 0.00 33.35 4.24
523 524 0.308993 GAACTGCACCAACTGACAGC 59.691 55.000 1.25 0.00 33.35 4.40
524 525 1.959042 AGAACTGCACCAACTGACAG 58.041 50.000 0.00 0.00 36.22 3.51
525 526 3.466836 CTTAGAACTGCACCAACTGACA 58.533 45.455 0.00 0.00 0.00 3.58
526 527 2.224314 GCTTAGAACTGCACCAACTGAC 59.776 50.000 0.00 0.00 0.00 3.51
527 528 2.158827 TGCTTAGAACTGCACCAACTGA 60.159 45.455 0.00 0.00 33.94 3.41
528 529 2.221169 TGCTTAGAACTGCACCAACTG 58.779 47.619 0.00 0.00 33.94 3.16
529 530 2.638480 TGCTTAGAACTGCACCAACT 57.362 45.000 0.00 0.00 33.94 3.16
530 531 3.066760 ACTTTGCTTAGAACTGCACCAAC 59.933 43.478 0.00 0.00 39.05 3.77
531 532 3.066621 CACTTTGCTTAGAACTGCACCAA 59.933 43.478 0.00 0.00 39.05 3.67
532 533 2.618241 CACTTTGCTTAGAACTGCACCA 59.382 45.455 0.00 0.00 39.05 4.17
533 534 2.618709 ACACTTTGCTTAGAACTGCACC 59.381 45.455 0.00 0.00 39.05 5.01
534 535 3.604772 CGACACTTTGCTTAGAACTGCAC 60.605 47.826 0.00 0.00 39.05 4.57
535 536 2.543848 CGACACTTTGCTTAGAACTGCA 59.456 45.455 0.00 0.00 37.42 4.41
536 537 2.544267 ACGACACTTTGCTTAGAACTGC 59.456 45.455 0.00 0.00 0.00 4.40
537 538 3.059597 CCACGACACTTTGCTTAGAACTG 60.060 47.826 0.00 0.00 0.00 3.16
538 539 3.131396 CCACGACACTTTGCTTAGAACT 58.869 45.455 0.00 0.00 0.00 3.01
539 540 2.349532 GCCACGACACTTTGCTTAGAAC 60.350 50.000 0.00 0.00 0.00 3.01
540 541 1.871039 GCCACGACACTTTGCTTAGAA 59.129 47.619 0.00 0.00 0.00 2.10
541 542 1.508632 GCCACGACACTTTGCTTAGA 58.491 50.000 0.00 0.00 0.00 2.10
542 543 0.163788 CGCCACGACACTTTGCTTAG 59.836 55.000 0.00 0.00 0.00 2.18
543 544 1.225376 CCGCCACGACACTTTGCTTA 61.225 55.000 0.00 0.00 0.00 3.09
544 545 2.542907 CCGCCACGACACTTTGCTT 61.543 57.895 0.00 0.00 0.00 3.91
545 546 2.972505 CCGCCACGACACTTTGCT 60.973 61.111 0.00 0.00 0.00 3.91
546 547 4.025401 CCCGCCACGACACTTTGC 62.025 66.667 0.00 0.00 0.00 3.68
547 548 1.635663 GATCCCGCCACGACACTTTG 61.636 60.000 0.00 0.00 0.00 2.77
548 549 1.375523 GATCCCGCCACGACACTTT 60.376 57.895 0.00 0.00 0.00 2.66
549 550 0.968901 TAGATCCCGCCACGACACTT 60.969 55.000 0.00 0.00 0.00 3.16
550 551 1.379443 TAGATCCCGCCACGACACT 60.379 57.895 0.00 0.00 0.00 3.55
551 552 1.226888 GTAGATCCCGCCACGACAC 60.227 63.158 0.00 0.00 0.00 3.67
552 553 2.767445 CGTAGATCCCGCCACGACA 61.767 63.158 0.00 0.00 36.53 4.35
553 554 2.025727 CGTAGATCCCGCCACGAC 59.974 66.667 0.00 0.00 36.53 4.34
554 555 2.438975 ACGTAGATCCCGCCACGA 60.439 61.111 0.00 0.00 37.80 4.35
555 556 2.278596 CACGTAGATCCCGCCACG 60.279 66.667 2.55 1.92 40.15 4.94
556 557 1.518572 CACACGTAGATCCCGCCAC 60.519 63.158 2.55 0.00 0.00 5.01
557 558 1.252215 TTCACACGTAGATCCCGCCA 61.252 55.000 2.55 0.00 0.00 5.69
558 559 0.527817 CTTCACACGTAGATCCCGCC 60.528 60.000 2.55 0.00 0.00 6.13
559 560 1.146358 GCTTCACACGTAGATCCCGC 61.146 60.000 2.55 0.00 0.00 6.13
560 561 0.866061 CGCTTCACACGTAGATCCCG 60.866 60.000 0.00 1.17 0.00 5.14
561 562 0.527817 CCGCTTCACACGTAGATCCC 60.528 60.000 0.00 0.00 0.00 3.85
562 563 0.454600 TCCGCTTCACACGTAGATCC 59.545 55.000 0.00 0.00 0.00 3.36
563 564 1.132643 ACTCCGCTTCACACGTAGATC 59.867 52.381 0.00 0.00 0.00 2.75
564 565 1.174783 ACTCCGCTTCACACGTAGAT 58.825 50.000 0.00 0.00 0.00 1.98
565 566 1.466167 GTACTCCGCTTCACACGTAGA 59.534 52.381 0.00 0.00 0.00 2.59
566 567 1.198408 TGTACTCCGCTTCACACGTAG 59.802 52.381 0.00 0.00 0.00 3.51
567 568 1.237533 TGTACTCCGCTTCACACGTA 58.762 50.000 0.00 0.00 0.00 3.57
568 569 0.601558 ATGTACTCCGCTTCACACGT 59.398 50.000 0.00 0.00 0.00 4.49
569 570 2.451132 CTATGTACTCCGCTTCACACG 58.549 52.381 0.00 0.00 0.00 4.49
570 571 2.159226 AGCTATGTACTCCGCTTCACAC 60.159 50.000 0.00 0.00 0.00 3.82
571 572 2.100197 AGCTATGTACTCCGCTTCACA 58.900 47.619 0.00 0.00 0.00 3.58
572 573 2.464865 CAGCTATGTACTCCGCTTCAC 58.535 52.381 0.00 0.00 0.00 3.18
573 574 1.202417 GCAGCTATGTACTCCGCTTCA 60.202 52.381 0.00 0.00 0.00 3.02
574 575 1.067821 AGCAGCTATGTACTCCGCTTC 59.932 52.381 0.00 0.00 0.00 3.86
575 576 1.115467 AGCAGCTATGTACTCCGCTT 58.885 50.000 0.00 0.00 0.00 4.68
576 577 1.067821 GAAGCAGCTATGTACTCCGCT 59.932 52.381 0.00 0.00 0.00 5.52
577 578 1.492720 GAAGCAGCTATGTACTCCGC 58.507 55.000 0.00 0.00 0.00 5.54
578 579 1.600663 CCGAAGCAGCTATGTACTCCG 60.601 57.143 0.00 0.00 0.00 4.63
579 580 1.681793 TCCGAAGCAGCTATGTACTCC 59.318 52.381 0.00 0.00 0.00 3.85
580 581 3.376540 CTTCCGAAGCAGCTATGTACTC 58.623 50.000 0.00 0.00 0.00 2.59
581 582 3.444703 CTTCCGAAGCAGCTATGTACT 57.555 47.619 0.00 0.00 0.00 2.73
593 594 2.415090 CCTTCATTTGCTGCTTCCGAAG 60.415 50.000 3.56 3.56 0.00 3.79
594 595 1.541147 CCTTCATTTGCTGCTTCCGAA 59.459 47.619 0.00 0.00 0.00 4.30
595 596 1.167851 CCTTCATTTGCTGCTTCCGA 58.832 50.000 0.00 0.00 0.00 4.55
596 597 1.131883 CTCCTTCATTTGCTGCTTCCG 59.868 52.381 0.00 0.00 0.00 4.30
597 598 2.163211 GACTCCTTCATTTGCTGCTTCC 59.837 50.000 0.00 0.00 0.00 3.46
598 599 3.080319 AGACTCCTTCATTTGCTGCTTC 58.920 45.455 0.00 0.00 0.00 3.86
599 600 2.818432 CAGACTCCTTCATTTGCTGCTT 59.182 45.455 0.00 0.00 0.00 3.91
600 601 2.434428 CAGACTCCTTCATTTGCTGCT 58.566 47.619 0.00 0.00 0.00 4.24
601 602 1.471684 CCAGACTCCTTCATTTGCTGC 59.528 52.381 0.00 0.00 0.00 5.25
602 603 3.063510 TCCAGACTCCTTCATTTGCTG 57.936 47.619 0.00 0.00 0.00 4.41
603 604 3.265221 TCATCCAGACTCCTTCATTTGCT 59.735 43.478 0.00 0.00 0.00 3.91
604 605 3.614092 TCATCCAGACTCCTTCATTTGC 58.386 45.455 0.00 0.00 0.00 3.68
605 606 4.639310 CCTTCATCCAGACTCCTTCATTTG 59.361 45.833 0.00 0.00 0.00 2.32
606 607 4.537688 TCCTTCATCCAGACTCCTTCATTT 59.462 41.667 0.00 0.00 0.00 2.32
607 608 4.107072 TCCTTCATCCAGACTCCTTCATT 58.893 43.478 0.00 0.00 0.00 2.57
608 609 3.710677 CTCCTTCATCCAGACTCCTTCAT 59.289 47.826 0.00 0.00 0.00 2.57
609 610 3.102972 CTCCTTCATCCAGACTCCTTCA 58.897 50.000 0.00 0.00 0.00 3.02
610 611 3.103742 ACTCCTTCATCCAGACTCCTTC 58.896 50.000 0.00 0.00 0.00 3.46
611 612 3.197927 ACTCCTTCATCCAGACTCCTT 57.802 47.619 0.00 0.00 0.00 3.36
612 613 2.938428 ACTCCTTCATCCAGACTCCT 57.062 50.000 0.00 0.00 0.00 3.69
613 614 2.834549 TGAACTCCTTCATCCAGACTCC 59.165 50.000 0.00 0.00 31.00 3.85
614 615 4.751767 ATGAACTCCTTCATCCAGACTC 57.248 45.455 0.00 0.00 42.54 3.36
615 616 5.010516 CGATATGAACTCCTTCATCCAGACT 59.989 44.000 0.00 0.00 42.54 3.24
616 617 5.010112 TCGATATGAACTCCTTCATCCAGAC 59.990 44.000 0.00 0.00 42.54 3.51
617 618 5.140454 TCGATATGAACTCCTTCATCCAGA 58.860 41.667 0.00 0.00 42.54 3.86
618 619 5.010516 ACTCGATATGAACTCCTTCATCCAG 59.989 44.000 0.00 0.00 42.54 3.86
619 620 4.895889 ACTCGATATGAACTCCTTCATCCA 59.104 41.667 0.00 0.00 42.54 3.41
620 621 5.461032 ACTCGATATGAACTCCTTCATCC 57.539 43.478 0.00 0.00 42.54 3.51
621 622 9.482627 AATTTACTCGATATGAACTCCTTCATC 57.517 33.333 0.00 0.00 42.54 2.92
622 623 9.265901 CAATTTACTCGATATGAACTCCTTCAT 57.734 33.333 1.78 1.78 46.84 2.57
623 624 7.224753 GCAATTTACTCGATATGAACTCCTTCA 59.775 37.037 0.00 0.00 40.77 3.02
624 625 7.224753 TGCAATTTACTCGATATGAACTCCTTC 59.775 37.037 0.00 0.00 0.00 3.46
625 626 7.011482 GTGCAATTTACTCGATATGAACTCCTT 59.989 37.037 0.00 0.00 0.00 3.36
626 627 6.480320 GTGCAATTTACTCGATATGAACTCCT 59.520 38.462 0.00 0.00 0.00 3.69
627 628 6.257849 TGTGCAATTTACTCGATATGAACTCC 59.742 38.462 0.00 0.00 0.00 3.85
628 629 7.222805 TCTGTGCAATTTACTCGATATGAACTC 59.777 37.037 0.00 0.00 0.00 3.01
629 630 7.041721 TCTGTGCAATTTACTCGATATGAACT 58.958 34.615 0.00 0.00 0.00 3.01
630 631 7.234187 TCTGTGCAATTTACTCGATATGAAC 57.766 36.000 0.00 0.00 0.00 3.18
631 632 7.549134 ACTTCTGTGCAATTTACTCGATATGAA 59.451 33.333 0.00 0.00 0.00 2.57
632 633 7.041721 ACTTCTGTGCAATTTACTCGATATGA 58.958 34.615 0.00 0.00 0.00 2.15
633 634 7.239166 ACTTCTGTGCAATTTACTCGATATG 57.761 36.000 0.00 0.00 0.00 1.78
634 635 7.438459 GGTACTTCTGTGCAATTTACTCGATAT 59.562 37.037 0.00 0.00 0.00 1.63
635 636 6.755141 GGTACTTCTGTGCAATTTACTCGATA 59.245 38.462 0.00 0.00 0.00 2.92
636 637 5.581085 GGTACTTCTGTGCAATTTACTCGAT 59.419 40.000 0.00 0.00 0.00 3.59
850 852 3.432588 CCTCGTCCGAGTCAGCGT 61.433 66.667 14.90 0.00 40.44 5.07
876 878 4.680237 CTGGCTCGGTCGCACCAA 62.680 66.667 6.21 0.00 38.47 3.67
1067 1076 0.616395 TACCTGGTTCAGCCCATCGA 60.616 55.000 3.84 0.00 36.04 3.59
1379 1388 4.219115 TCACCAAGGCAAGAAAATTACCA 58.781 39.130 0.00 0.00 0.00 3.25
1432 1442 2.438021 ACAGGTGGCAAACAAGACTCTA 59.562 45.455 0.00 0.00 0.00 2.43
1565 1575 3.375782 ACACTGCATTTGGAAAGAAGC 57.624 42.857 0.00 0.00 0.00 3.86
1882 1894 9.519191 TTTGCACAGCCATATATTTACTCATAT 57.481 29.630 0.00 0.00 0.00 1.78
1883 1895 8.916628 TTTGCACAGCCATATATTTACTCATA 57.083 30.769 0.00 0.00 0.00 2.15
1884 1896 7.822161 TTTGCACAGCCATATATTTACTCAT 57.178 32.000 0.00 0.00 0.00 2.90
1885 1897 7.040478 GGATTTGCACAGCCATATATTTACTCA 60.040 37.037 1.37 0.00 0.00 3.41
1887 1899 6.777091 TGGATTTGCACAGCCATATATTTACT 59.223 34.615 5.56 0.00 0.00 2.24
1890 1902 5.599656 ACTGGATTTGCACAGCCATATATTT 59.400 36.000 10.80 0.00 38.25 1.40
1891 1903 5.142639 ACTGGATTTGCACAGCCATATATT 58.857 37.500 10.80 0.00 38.25 1.28
1892 1904 4.733165 ACTGGATTTGCACAGCCATATAT 58.267 39.130 10.80 0.00 38.25 0.86
1893 1905 4.169059 ACTGGATTTGCACAGCCATATA 57.831 40.909 10.80 0.00 38.25 0.86
2329 2428 4.039488 TGCATCTTTCTTTGCCATTTCTGT 59.961 37.500 0.00 0.00 38.08 3.41
2364 2463 6.828785 ACAGGAGTTCATACTTTTGTTGAAGT 59.171 34.615 0.00 0.00 42.27 3.01
3089 3265 2.092323 GGAACCACCTAAAGCATCACC 58.908 52.381 0.00 0.00 35.41 4.02
3132 3308 4.042934 ACCACCTAAAGCATTCAACTAGGT 59.957 41.667 0.00 0.00 42.46 3.08
3166 3342 0.323629 CTAGGGTTTTGGTGGCTCGA 59.676 55.000 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.