Multiple sequence alignment - TraesCS2D01G284100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G284100 chr2D 100.000 3804 0 0 1 3804 358133791 358137594 0.000000e+00 7025.0
1 TraesCS2D01G284100 chr2D 82.383 193 22 7 3264 3447 332554151 332554340 1.410000e-34 158.0
2 TraesCS2D01G284100 chr2B 94.943 3243 101 25 10 3223 425793979 425797187 0.000000e+00 5022.0
3 TraesCS2D01G284100 chr2B 85.864 191 16 6 3270 3454 425801013 425801198 3.880000e-45 193.0
4 TraesCS2D01G284100 chr2A 94.612 3211 120 22 36 3230 480647902 480651075 0.000000e+00 4922.0
5 TraesCS2D01G284100 chr2A 89.062 320 35 0 3485 3804 480651480 480651799 7.660000e-107 398.0
6 TraesCS2D01G284100 chr4A 85.802 324 39 2 3481 3804 430178077 430178393 1.690000e-88 337.0
7 TraesCS2D01G284100 chr4A 83.462 260 35 5 3484 3743 57170215 57169964 6.350000e-58 235.0
8 TraesCS2D01G284100 chr3D 83.951 324 43 4 3473 3793 136410465 136410782 6.180000e-78 302.0
9 TraesCS2D01G284100 chr3D 85.644 202 14 8 3264 3456 133536101 133536296 8.340000e-47 198.0
10 TraesCS2D01G284100 chr3D 92.593 54 3 1 3178 3230 166955784 166955731 4.070000e-10 76.8
11 TraesCS2D01G284100 chr3D 100.000 28 0 0 3203 3230 313993487 313993460 7.000000e-03 52.8
12 TraesCS2D01G284100 chr3B 83.489 321 50 2 3485 3804 389502398 389502716 2.870000e-76 296.0
13 TraesCS2D01G284100 chr6B 82.848 309 53 0 3496 3804 148002883 148002575 1.040000e-70 278.0
14 TraesCS2D01G284100 chr6B 88.000 75 9 0 2233 2307 471630240 471630314 5.230000e-14 89.8
15 TraesCS2D01G284100 chr4D 83.274 281 42 5 3481 3758 100338217 100337939 1.750000e-63 254.0
16 TraesCS2D01G284100 chr3A 80.178 338 57 5 3473 3801 154040047 154040383 1.060000e-60 244.0
17 TraesCS2D01G284100 chr7D 86.364 198 22 2 3264 3461 461954246 461954438 1.070000e-50 211.0
18 TraesCS2D01G284100 chr1B 86.957 184 18 4 3274 3453 399002515 399002696 6.440000e-48 202.0
19 TraesCS2D01G284100 chr5D 85.492 193 23 3 3264 3456 490521551 490521364 3.000000e-46 196.0
20 TraesCS2D01G284100 chr5D 84.694 196 17 8 3264 3450 482525486 482525295 2.330000e-42 183.0
21 TraesCS2D01G284100 chr7B 85.052 194 22 5 3264 3454 589759993 589760182 1.390000e-44 191.0
22 TraesCS2D01G284100 chr7A 77.914 326 58 8 3481 3802 432430784 432430469 1.390000e-44 191.0
23 TraesCS2D01G284100 chr7A 83.516 182 19 8 3274 3454 628525257 628525428 3.930000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G284100 chr2D 358133791 358137594 3803 False 7025.0 7025 100.0000 1 3804 1 chr2D.!!$F2 3803
1 TraesCS2D01G284100 chr2B 425793979 425801198 7219 False 2607.5 5022 90.4035 10 3454 2 chr2B.!!$F1 3444
2 TraesCS2D01G284100 chr2A 480647902 480651799 3897 False 2660.0 4922 91.8370 36 3804 2 chr2A.!!$F1 3768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 187 0.035176 AACGGGCTAACGCAAGGTAA 59.965 50.0 0.0 0.0 40.37 2.85 F
1087 1104 0.252197 AACTCGATTAGCCGCCCTTT 59.748 50.0 0.0 0.0 0.00 3.11 F
1278 1300 0.387565 GGAATCCTCTGCTCCTCGTC 59.612 60.0 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1286 1308 1.135170 TCATGAGAACAGAGCAGAGCG 60.135 52.381 0.00 0.0 0.00 5.03 R
2660 2683 1.525619 GTTGTTCTTTACTCGCAGCGT 59.474 47.619 15.93 0.0 0.00 5.07 R
3223 3259 0.732571 GCCGATCCAAATCAAAGCGA 59.267 50.000 0.00 0.0 31.76 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.034179 GTGTGGAAGTAAGTTGCCAACC 59.966 50.000 3.45 0.00 31.18 3.77
30 31 1.265905 GTGGAAGTAAGTTGCCAACCG 59.734 52.381 3.45 0.00 31.18 4.44
32 33 1.265905 GGAAGTAAGTTGCCAACCGTG 59.734 52.381 3.45 0.00 0.00 4.94
33 34 1.944709 GAAGTAAGTTGCCAACCGTGT 59.055 47.619 3.45 0.00 0.00 4.49
67 76 2.684374 ACTTCCACACAACCGGTTTTAC 59.316 45.455 19.55 0.00 0.00 2.01
73 82 3.493877 CACACAACCGGTTTTACACGATA 59.506 43.478 19.55 0.00 0.00 2.92
158 171 3.377172 ACCCTTGTCTTTTGAAGTGAACG 59.623 43.478 0.00 0.00 0.00 3.95
165 178 3.562557 TCTTTTGAAGTGAACGGGCTAAC 59.437 43.478 0.00 0.00 0.00 2.34
169 182 0.533308 AAGTGAACGGGCTAACGCAA 60.533 50.000 0.00 0.00 38.10 4.85
174 187 0.035176 AACGGGCTAACGCAAGGTAA 59.965 50.000 0.00 0.00 40.37 2.85
195 208 7.754924 AGGTAATCAATAAAACTTGTTGATGCG 59.245 33.333 10.82 0.00 46.45 4.73
219 232 7.201418 GCGTGGAACTACTTAATAAGTTGAGAC 60.201 40.741 18.56 9.62 42.81 3.36
242 255 3.927142 GGTTGGTGTCTTGTCGATAAGAG 59.073 47.826 23.05 0.00 37.36 2.85
283 296 8.625651 TGCTAAAAGCTAAAAAGTAACATGTCA 58.374 29.630 0.00 0.00 42.97 3.58
287 300 7.801716 AAGCTAAAAAGTAACATGTCACTGA 57.198 32.000 1.34 0.00 0.00 3.41
301 314 9.603921 AACATGTCACTGAAAAATGAAAGAAAT 57.396 25.926 0.00 0.00 0.00 2.17
410 424 9.137459 TGAGGGACAATCATTTTTGTTTTACTA 57.863 29.630 0.00 0.00 39.85 1.82
453 468 2.028020 AGTTCCCTTCGTTCCTCATGAC 60.028 50.000 0.00 0.00 0.00 3.06
459 474 3.120649 CCTTCGTTCCTCATGACGTTTTC 60.121 47.826 4.80 0.00 40.03 2.29
635 651 5.649782 ATTGACAAGTATGGGCAAGAAAG 57.350 39.130 0.00 0.00 43.05 2.62
697 713 6.825721 ACAATTTGGAATCTTCTAGCTACCAG 59.174 38.462 0.78 0.00 0.00 4.00
778 795 9.574516 CCTACCAATTATAGGCTCTACAAAATT 57.425 33.333 0.00 0.00 33.08 1.82
784 801 7.962964 TTATAGGCTCTACAAAATTCATCGG 57.037 36.000 0.00 0.00 0.00 4.18
879 896 1.002315 GGCAAGCCCAACACAATTCAT 59.998 47.619 0.00 0.00 0.00 2.57
883 900 3.874392 AGCCCAACACAATTCATAAGC 57.126 42.857 0.00 0.00 0.00 3.09
884 901 2.164219 AGCCCAACACAATTCATAAGCG 59.836 45.455 0.00 0.00 0.00 4.68
885 902 2.529151 CCCAACACAATTCATAAGCGC 58.471 47.619 0.00 0.00 0.00 5.92
886 903 2.164219 CCCAACACAATTCATAAGCGCT 59.836 45.455 2.64 2.64 0.00 5.92
887 904 3.429085 CCAACACAATTCATAAGCGCTC 58.571 45.455 12.06 0.00 0.00 5.03
888 905 3.127548 CCAACACAATTCATAAGCGCTCT 59.872 43.478 12.06 3.55 0.00 4.09
1087 1104 0.252197 AACTCGATTAGCCGCCCTTT 59.748 50.000 0.00 0.00 0.00 3.11
1095 1112 4.669318 GATTAGCCGCCCTTTACTTTTTC 58.331 43.478 0.00 0.00 0.00 2.29
1249 1271 3.152662 AGGACGGTCCTTGGTTGTA 57.847 52.632 23.90 0.00 46.91 2.41
1275 1297 1.207791 TTGGGAATCCTCTGCTCCTC 58.792 55.000 0.00 0.00 0.00 3.71
1278 1300 0.387565 GGAATCCTCTGCTCCTCGTC 59.612 60.000 0.00 0.00 0.00 4.20
1286 1308 1.743321 CTGCTCCTCGTCCCATCCTC 61.743 65.000 0.00 0.00 0.00 3.71
1572 1594 4.258543 TCCGCGGAATCTAACAAATTTCT 58.741 39.130 28.99 0.00 0.00 2.52
1685 1707 5.556915 TCCAGACGGTAATTCACTGAAAAT 58.443 37.500 0.00 0.00 36.95 1.82
1686 1708 6.001460 TCCAGACGGTAATTCACTGAAAATT 58.999 36.000 0.00 0.00 36.95 1.82
2324 2347 4.803426 GCACCGTGAGCTCCGAGG 62.803 72.222 21.43 18.29 0.00 4.63
2473 2496 3.695606 GAGCTGGAGGTCCGCACA 61.696 66.667 13.06 0.00 39.43 4.57
2476 2499 3.023949 GCTGGAGGTCCGCACAGAT 62.024 63.158 12.95 0.00 39.43 2.90
2684 2707 1.202557 TGCGAGTAAAGAACAACCCGT 60.203 47.619 0.00 0.00 0.00 5.28
2889 2912 1.764571 TTGGTCCAGTCCTTCCGGTG 61.765 60.000 0.00 0.00 0.00 4.94
3036 3059 9.388672 AGTTTAGCTTGGGTATATACTGGAATA 57.611 33.333 12.54 0.00 0.00 1.75
3038 3061 8.967779 TTAGCTTGGGTATATACTGGAATAGT 57.032 34.615 12.54 0.00 43.56 2.12
3043 3066 6.765403 TGGGTATATACTGGAATAGTGTTGC 58.235 40.000 12.54 0.00 40.65 4.17
3237 7036 3.380142 GCTTTGTTCGCTTTGATTTGGA 58.620 40.909 0.00 0.00 0.00 3.53
3240 7039 3.469899 TGTTCGCTTTGATTTGGATCG 57.530 42.857 0.00 0.00 34.91 3.69
3246 7045 2.478539 GCTTTGATTTGGATCGGCAGAC 60.479 50.000 0.00 0.00 34.91 3.51
3267 7066 3.411351 CCGAACGGAAGGCACGTG 61.411 66.667 12.28 12.28 44.83 4.49
3268 7067 2.355363 CGAACGGAAGGCACGTGA 60.355 61.111 22.23 0.00 44.83 4.35
3321 7136 0.820074 AAATGACCGGTCAAACGCCA 60.820 50.000 39.04 16.92 43.58 5.69
3347 7162 7.888546 AGCCAAAGTCCACTTAAACATATAACT 59.111 33.333 0.00 0.00 34.61 2.24
3384 7199 3.000041 TCTAATAAACACCTGCACGCTG 59.000 45.455 0.00 0.00 0.00 5.18
3399 7214 3.077556 CTGCCCCAGTAGACCGCT 61.078 66.667 0.00 0.00 0.00 5.52
3404 7219 1.003839 CCCAGTAGACCGCTTTGCA 60.004 57.895 0.00 0.00 0.00 4.08
3453 7274 2.224066 GGTGAGGTCGATGAATACAGGG 60.224 54.545 0.00 0.00 0.00 4.45
3457 7278 1.070289 GGTCGATGAATACAGGGGGTC 59.930 57.143 0.00 0.00 0.00 4.46
3461 7282 2.040009 ATGAATACAGGGGGTCGCCG 62.040 60.000 0.00 0.00 0.00 6.46
3462 7283 3.456105 GAATACAGGGGGTCGCCGG 62.456 68.421 0.00 0.00 0.00 6.13
3481 7379 4.200283 GAGGCGTGCTCCTCCTCG 62.200 72.222 8.46 0.00 45.40 4.63
3532 7442 1.152830 GTTGGTCCCCTCCTTTGCA 59.847 57.895 0.00 0.00 0.00 4.08
3581 7491 4.521062 CCGCCTCCTCTTCCAGCG 62.521 72.222 0.00 0.00 46.04 5.18
3625 7535 1.915769 GCTCACCCACCCTCAGAGT 60.916 63.158 0.00 0.00 0.00 3.24
3635 7545 2.583441 CCTCAGAGTTGGCCGGTCA 61.583 63.158 3.51 3.51 0.00 4.02
3664 7574 4.649705 TCCTCGGGCCAAGTGGGA 62.650 66.667 4.39 7.83 40.01 4.37
3677 7587 3.785859 TGGGAGGCAGCGATGACC 61.786 66.667 1.00 4.18 0.00 4.02
3706 7616 4.681978 GGTGTTGGCTCGCGGTCT 62.682 66.667 6.13 0.00 0.00 3.85
3707 7617 3.414700 GTGTTGGCTCGCGGTCTG 61.415 66.667 6.13 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.287766 ACTTACTTCCACACCCATCTTC 57.712 45.455 0.00 0.00 0.00 2.87
1 2 4.398319 CAACTTACTTCCACACCCATCTT 58.602 43.478 0.00 0.00 0.00 2.40
2 3 3.810743 GCAACTTACTTCCACACCCATCT 60.811 47.826 0.00 0.00 0.00 2.90
3 4 2.488153 GCAACTTACTTCCACACCCATC 59.512 50.000 0.00 0.00 0.00 3.51
4 5 2.514803 GCAACTTACTTCCACACCCAT 58.485 47.619 0.00 0.00 0.00 4.00
5 6 1.477923 GGCAACTTACTTCCACACCCA 60.478 52.381 0.00 0.00 0.00 4.51
6 7 1.244816 GGCAACTTACTTCCACACCC 58.755 55.000 0.00 0.00 0.00 4.61
7 8 1.975660 TGGCAACTTACTTCCACACC 58.024 50.000 0.00 0.00 37.61 4.16
8 9 2.034179 GGTTGGCAACTTACTTCCACAC 59.966 50.000 27.77 4.84 37.61 3.82
33 34 3.129638 GTGTGGAAGTAAGTTGCCAACAA 59.870 43.478 10.69 0.00 31.18 2.83
151 164 0.949105 CTTGCGTTAGCCCGTTCACT 60.949 55.000 0.00 0.00 44.33 3.41
158 171 2.032680 TGATTACCTTGCGTTAGCCC 57.967 50.000 0.00 0.00 44.33 5.19
165 178 7.593273 TCAACAAGTTTTATTGATTACCTTGCG 59.407 33.333 0.00 0.00 34.20 4.85
169 182 7.754924 CGCATCAACAAGTTTTATTGATTACCT 59.245 33.333 4.68 0.00 40.30 3.08
174 187 5.863397 CCACGCATCAACAAGTTTTATTGAT 59.137 36.000 0.00 0.00 42.43 2.57
195 208 7.275123 CCGTCTCAACTTATTAAGTAGTTCCAC 59.725 40.741 9.43 2.53 41.91 4.02
219 232 2.357327 TATCGACAAGACACCAACCG 57.643 50.000 0.00 0.00 0.00 4.44
242 255 8.257830 AGCTTTTAGCAAACTAGAGACATAAC 57.742 34.615 0.00 0.00 45.56 1.89
301 314 6.324770 TCAGACATACAAGCAAGGATCTCATA 59.675 38.462 0.00 0.00 0.00 2.15
307 320 3.683847 GCCTCAGACATACAAGCAAGGAT 60.684 47.826 0.00 0.00 0.00 3.24
354 368 7.181569 TCAAAAGAAGATTTGTTTGTCCCTT 57.818 32.000 0.00 0.00 40.40 3.95
355 369 6.183360 CCTCAAAAGAAGATTTGTTTGTCCCT 60.183 38.462 0.00 0.00 40.40 4.20
369 383 4.013050 GTCCCTCATTCCCTCAAAAGAAG 58.987 47.826 0.00 0.00 0.00 2.85
410 424 5.424895 ACTTAAGACTCCATCATCAGCTTCT 59.575 40.000 10.09 0.00 0.00 2.85
482 497 7.148590 GGCAACATAAACTGACATTCAAATTCC 60.149 37.037 0.00 0.00 0.00 3.01
571 587 1.148157 CCGTCGCTTAGCATGACCTG 61.148 60.000 4.70 0.00 0.00 4.00
628 644 6.055231 TGTTATTGGAACGTGTCTTTCTTG 57.945 37.500 0.00 0.00 0.00 3.02
635 651 2.486592 CCCCTTGTTATTGGAACGTGTC 59.513 50.000 0.00 0.00 0.00 3.67
697 713 7.958053 ACGCAATCATAGGTAGGTAATTAAC 57.042 36.000 0.00 0.00 0.00 2.01
778 795 0.742990 GAACGGGTTGATGCCGATGA 60.743 55.000 0.00 0.00 0.00 2.92
784 801 1.024579 ACGGATGAACGGGTTGATGC 61.025 55.000 0.00 0.00 38.39 3.91
879 896 2.434336 AGAGAGAGAGAGAGAGCGCTTA 59.566 50.000 13.26 0.00 0.00 3.09
883 900 2.363680 AGAGAGAGAGAGAGAGAGAGCG 59.636 54.545 0.00 0.00 0.00 5.03
884 901 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
885 902 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
886 903 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
887 904 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
888 905 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
957 974 4.320788 GCATCAACAGCTTAGCTTCACTTT 60.321 41.667 3.00 0.00 36.40 2.66
1095 1112 7.845066 ATCCCTAAAACGAAGCTAACTTTAG 57.155 36.000 0.00 0.00 35.82 1.85
1249 1271 3.117738 AGCAGAGGATTCCCAATTTCGAT 60.118 43.478 0.00 0.00 33.88 3.59
1275 1297 2.415010 CAGAGCGAGGATGGGACG 59.585 66.667 0.00 0.00 0.00 4.79
1278 1300 2.132996 AGAGCAGAGCGAGGATGGG 61.133 63.158 0.00 0.00 0.00 4.00
1286 1308 1.135170 TCATGAGAACAGAGCAGAGCG 60.135 52.381 0.00 0.00 0.00 5.03
1506 1528 2.166664 ACTAGAAGTCTTGATGGCCGTC 59.833 50.000 18.69 18.69 0.00 4.79
1572 1594 3.007473 ACAAGGGGAAAACGAAGAACA 57.993 42.857 0.00 0.00 0.00 3.18
1713 1736 3.695830 AAAACTCCTTCTCGCCACATA 57.304 42.857 0.00 0.00 0.00 2.29
1716 1739 2.218603 TCAAAAACTCCTTCTCGCCAC 58.781 47.619 0.00 0.00 0.00 5.01
1717 1740 2.494059 CTCAAAAACTCCTTCTCGCCA 58.506 47.619 0.00 0.00 0.00 5.69
1718 1741 1.807142 CCTCAAAAACTCCTTCTCGCC 59.193 52.381 0.00 0.00 0.00 5.54
1720 1743 4.997395 TCAATCCTCAAAAACTCCTTCTCG 59.003 41.667 0.00 0.00 0.00 4.04
1721 1744 6.000840 ACTCAATCCTCAAAAACTCCTTCTC 58.999 40.000 0.00 0.00 0.00 2.87
1722 1745 5.946486 ACTCAATCCTCAAAAACTCCTTCT 58.054 37.500 0.00 0.00 0.00 2.85
1723 1746 6.641169 AACTCAATCCTCAAAAACTCCTTC 57.359 37.500 0.00 0.00 0.00 3.46
1724 1747 6.381133 ACAAACTCAATCCTCAAAAACTCCTT 59.619 34.615 0.00 0.00 0.00 3.36
2660 2683 1.525619 GTTGTTCTTTACTCGCAGCGT 59.474 47.619 15.93 0.00 0.00 5.07
2668 2691 1.951602 GCCAACGGGTTGTTCTTTACT 59.048 47.619 10.37 0.00 39.29 2.24
2889 2912 5.179742 GCTTGATCATCACCATCATCTTCTC 59.820 44.000 0.00 0.00 30.26 2.87
3038 3061 3.324846 ACAGAGATTCTAGTGGTGCAACA 59.675 43.478 0.00 0.00 39.98 3.33
3043 3066 8.687242 TGAGTATTTACAGAGATTCTAGTGGTG 58.313 37.037 2.42 0.00 0.00 4.17
3223 3259 0.732571 GCCGATCCAAATCAAAGCGA 59.267 50.000 0.00 0.00 31.76 4.93
3252 7051 2.315386 GGTCACGTGCCTTCCGTTC 61.315 63.158 11.67 0.00 36.17 3.95
3264 7063 2.427232 TTAAGTCAGTTCCGGTCACG 57.573 50.000 0.00 0.00 40.55 4.35
3265 7064 5.163884 GCTTAATTAAGTCAGTTCCGGTCAC 60.164 44.000 22.94 0.00 35.75 3.67
3266 7065 4.933400 GCTTAATTAAGTCAGTTCCGGTCA 59.067 41.667 22.94 0.00 35.75 4.02
3267 7066 4.933400 TGCTTAATTAAGTCAGTTCCGGTC 59.067 41.667 22.94 5.81 35.75 4.79
3268 7067 4.901868 TGCTTAATTAAGTCAGTTCCGGT 58.098 39.130 22.94 0.00 35.75 5.28
3321 7136 7.888546 AGTTATATGTTTAAGTGGACTTTGGCT 59.111 33.333 0.00 0.00 37.40 4.75
3384 7199 1.745489 CAAAGCGGTCTACTGGGGC 60.745 63.158 0.00 0.00 0.00 5.80
3388 7203 3.217242 ACTGCAAAGCGGTCTACTG 57.783 52.632 0.00 0.00 45.94 2.74
3399 7214 1.034838 ACGACAAGGGCAACTGCAAA 61.035 50.000 3.76 0.00 44.36 3.68
3404 7219 1.300697 GACGACGACAAGGGCAACT 60.301 57.895 0.00 0.00 0.00 3.16
3519 7429 0.783206 TTGGATTGCAAAGGAGGGGA 59.217 50.000 1.71 0.00 0.00 4.81
3542 7452 1.221414 CACCTTGAGCGCTATAAGGC 58.779 55.000 35.17 16.41 43.73 4.35
3568 7478 3.700109 TCCACGCTGGAAGAGGAG 58.300 61.111 4.51 0.00 45.00 3.69
3578 7488 2.885861 CTACTTCGCCTCCACGCT 59.114 61.111 0.00 0.00 0.00 5.07
3581 7491 1.153549 CCTGCTACTTCGCCTCCAC 60.154 63.158 0.00 0.00 0.00 4.02
3588 7498 1.226717 GCGTCTCCCTGCTACTTCG 60.227 63.158 0.00 0.00 0.00 3.79
3617 7527 2.111999 TTGACCGGCCAACTCTGAGG 62.112 60.000 9.85 0.00 0.00 3.86
3621 7531 2.030562 CGTTGACCGGCCAACTCT 59.969 61.111 27.78 0.00 43.02 3.24
3625 7535 0.391927 CCTATTCGTTGACCGGCCAA 60.392 55.000 0.00 0.00 37.11 4.52
3635 7545 1.400737 CCCGAGGAGTCCTATTCGTT 58.599 55.000 12.99 0.00 31.76 3.85
3638 7548 0.759436 TGGCCCGAGGAGTCCTATTC 60.759 60.000 12.99 0.00 31.76 1.75
3691 7601 4.680237 CCAGACCGCGAGCCAACA 62.680 66.667 8.23 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.