Multiple sequence alignment - TraesCS2D01G283400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G283400 chr2D 100.000 6268 0 0 1 6268 357696536 357702803 0.000000e+00 11575.0
1 TraesCS2D01G283400 chr2D 84.851 1208 168 13 4067 5271 34989287 34988092 0.000000e+00 1203.0
2 TraesCS2D01G283400 chr2D 85.150 1165 160 12 4110 5271 585516216 585517370 0.000000e+00 1181.0
3 TraesCS2D01G283400 chr2D 84.293 1216 175 14 4067 5278 585475911 585477114 0.000000e+00 1173.0
4 TraesCS2D01G283400 chr2D 84.365 1196 172 12 4079 5271 34996030 34994847 0.000000e+00 1158.0
5 TraesCS2D01G283400 chr2D 87.766 376 26 11 979 1352 585473465 585473822 7.510000e-114 422.0
6 TraesCS2D01G283400 chr2D 91.781 292 24 0 1064 1355 585501811 585502102 2.100000e-109 407.0
7 TraesCS2D01G283400 chr2D 91.289 287 25 0 1069 1355 34992145 34991859 5.890000e-105 392.0
8 TraesCS2D01G283400 chr2D 90.722 291 27 0 1065 1355 34998745 34998455 7.620000e-104 388.0
9 TraesCS2D01G283400 chr2D 80.736 462 71 13 1894 2338 585474126 585474586 1.670000e-90 344.0
10 TraesCS2D01G283400 chr2D 79.587 436 64 13 1925 2338 585502337 585502769 7.950000e-74 289.0
11 TraesCS2D01G283400 chr2D 100.000 150 0 0 462 611 377155890 377156039 1.720000e-70 278.0
12 TraesCS2D01G283400 chr2D 89.604 202 21 0 3463 3664 34989901 34989700 2.240000e-64 257.0
13 TraesCS2D01G283400 chr2D 86.784 227 29 1 3438 3663 34996667 34996441 1.040000e-62 252.0
14 TraesCS2D01G283400 chr2D 86.017 236 30 3 3456 3690 585475298 585475531 3.750000e-62 250.0
15 TraesCS2D01G283400 chr2D 89.894 188 17 2 3071 3257 585474941 585475127 2.260000e-59 241.0
16 TraesCS2D01G283400 chr2D 85.778 225 28 4 1909 2130 34991506 34991283 1.050000e-57 235.0
17 TraesCS2D01G283400 chr2D 96.992 133 4 0 1375 1507 648256540 648256408 2.270000e-54 224.0
18 TraesCS2D01G283400 chr2D 87.831 189 18 5 3071 3257 585514990 585515175 3.810000e-52 217.0
19 TraesCS2D01G283400 chr2D 87.013 77 10 0 5808 5884 193590728 193590652 3.110000e-13 87.9
20 TraesCS2D01G283400 chr2B 96.379 2734 64 13 2888 5601 425351066 425353784 0.000000e+00 4468.0
21 TraesCS2D01G283400 chr2B 94.187 1015 49 8 1796 2802 425349669 425350681 0.000000e+00 1539.0
22 TraesCS2D01G283400 chr2B 85.182 1208 164 13 4067 5271 57665792 57664597 0.000000e+00 1225.0
23 TraesCS2D01G283400 chr2B 95.833 768 14 7 628 1378 425348744 425349510 0.000000e+00 1225.0
24 TraesCS2D01G283400 chr2B 84.127 1197 173 14 4079 5271 57673833 57672650 0.000000e+00 1142.0
25 TraesCS2D01G283400 chr2B 82.422 1280 194 25 4079 5348 706417256 706418514 0.000000e+00 1088.0
26 TraesCS2D01G283400 chr2B 86.382 749 94 8 4526 5271 705890299 705889556 0.000000e+00 811.0
27 TraesCS2D01G283400 chr2B 88.372 344 25 5 1012 1355 57670112 57669784 3.520000e-107 399.0
28 TraesCS2D01G283400 chr2B 90.378 291 28 0 1062 1352 706414779 706415069 3.550000e-102 383.0
29 TraesCS2D01G283400 chr2B 91.266 229 10 3 206 433 425348450 425348669 2.840000e-78 303.0
30 TraesCS2D01G283400 chr2B 91.781 219 8 6 6029 6239 425354058 425354274 4.750000e-76 296.0
31 TraesCS2D01G283400 chr2B 100.000 152 0 0 461 612 62547685 62547534 1.330000e-71 281.0
32 TraesCS2D01G283400 chr2B 82.540 315 49 6 3390 3701 706416577 706416888 8.010000e-69 272.0
33 TraesCS2D01G283400 chr2B 89.604 202 21 0 3463 3664 57666406 57666205 2.240000e-64 257.0
34 TraesCS2D01G283400 chr2B 86.784 227 29 1 3438 3663 57674472 57674246 1.040000e-62 252.0
35 TraesCS2D01G283400 chr2B 85.776 232 27 5 1909 2135 57669430 57669200 2.260000e-59 241.0
36 TraesCS2D01G283400 chr2B 96.350 137 5 0 1500 1636 425349507 425349643 6.320000e-55 226.0
37 TraesCS2D01G283400 chr2B 89.831 177 14 4 3071 3245 706416290 706416464 2.270000e-54 224.0
38 TraesCS2D01G283400 chr2B 95.652 138 5 1 1368 1504 423662817 423662680 2.940000e-53 220.0
39 TraesCS2D01G283400 chr2B 90.385 52 4 1 1 52 425348315 425348365 4.060000e-07 67.6
40 TraesCS2D01G283400 chr2A 96.017 1682 51 10 3988 5665 478761520 478763189 0.000000e+00 2721.0
41 TraesCS2D01G283400 chr2A 94.587 1090 44 7 2901 3989 478760284 478761359 0.000000e+00 1672.0
42 TraesCS2D01G283400 chr2A 85.017 1208 166 13 4067 5271 38310562 38309367 0.000000e+00 1214.0
43 TraesCS2D01G283400 chr2A 94.891 783 19 8 612 1376 478757845 478758624 0.000000e+00 1205.0
44 TraesCS2D01G283400 chr2A 84.821 1199 165 13 4079 5276 719540056 719541238 0.000000e+00 1190.0
45 TraesCS2D01G283400 chr2A 95.568 519 19 3 1651 2165 478758798 478759316 0.000000e+00 828.0
46 TraesCS2D01G283400 chr2A 93.228 443 20 3 2197 2631 478759319 478759759 1.470000e-180 643.0
47 TraesCS2D01G283400 chr2A 92.542 295 10 6 171 462 478757569 478757854 4.520000e-111 412.0
48 TraesCS2D01G283400 chr2A 90.378 291 28 0 1065 1355 38314147 38313857 3.550000e-102 383.0
49 TraesCS2D01G283400 chr2A 88.259 247 11 7 6008 6239 478763345 478763588 4.780000e-71 279.0
50 TraesCS2D01G283400 chr2A 90.099 202 20 0 3463 3664 38311176 38310975 4.820000e-66 263.0
51 TraesCS2D01G283400 chr2A 90.960 177 12 4 3071 3245 719539088 719539262 1.050000e-57 235.0
52 TraesCS2D01G283400 chr2A 90.476 147 8 4 1 146 478757434 478757575 8.300000e-44 189.0
53 TraesCS2D01G283400 chr2A 95.652 115 5 0 1511 1625 478758626 478758740 1.070000e-42 185.0
54 TraesCS2D01G283400 chr2A 89.437 142 8 4 2757 2891 478760086 478760227 8.350000e-39 172.0
55 TraesCS2D01G283400 chr2A 89.706 68 7 0 5808 5875 718971800 718971733 3.110000e-13 87.9
56 TraesCS2D01G283400 chr7A 100.000 151 0 0 461 611 161728485 161728335 4.780000e-71 279.0
57 TraesCS2D01G283400 chr7A 96.992 133 3 1 1371 1503 15493957 15493826 8.180000e-54 222.0
58 TraesCS2D01G283400 chr5B 99.351 154 1 0 462 615 502027194 502027041 4.780000e-71 279.0
59 TraesCS2D01G283400 chr5B 100.000 151 0 0 461 611 511066974 511067124 4.780000e-71 279.0
60 TraesCS2D01G283400 chr3A 100.000 151 0 0 461 611 637291922 637292072 4.780000e-71 279.0
61 TraesCS2D01G283400 chr6B 100.000 150 0 0 462 611 585570207 585570356 1.720000e-70 278.0
62 TraesCS2D01G283400 chr6A 100.000 150 0 0 462 611 80819964 80820113 1.720000e-70 278.0
63 TraesCS2D01G283400 chr7D 96.341 164 4 2 448 611 420738288 420738449 1.040000e-67 268.0
64 TraesCS2D01G283400 chr1D 100.000 129 0 0 1375 1503 158107645 158107773 8.120000e-59 239.0
65 TraesCS2D01G283400 chr3D 100.000 128 0 0 1376 1503 593115225 593115352 2.920000e-58 237.0
66 TraesCS2D01G283400 chr3D 94.928 138 7 0 1377 1514 91666450 91666587 3.810000e-52 217.0
67 TraesCS2D01G283400 chr3B 97.692 130 3 0 1374 1503 277029204 277029333 2.270000e-54 224.0
68 TraesCS2D01G283400 chr3B 93.793 145 7 2 1370 1514 548889172 548889314 3.810000e-52 217.0
69 TraesCS2D01G283400 chr3B 88.462 52 5 1 5834 5885 16342566 16342516 1.890000e-05 62.1
70 TraesCS2D01G283400 chr6D 95.588 136 6 0 1375 1510 423681218 423681353 1.060000e-52 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G283400 chr2D 357696536 357702803 6267 False 11575.000000 11575 100.000000 1 6268 1 chr2D.!!$F1 6267
1 TraesCS2D01G283400 chr2D 585514990 585517370 2380 False 699.000000 1181 86.490500 3071 5271 2 chr2D.!!$F5 2200
2 TraesCS2D01G283400 chr2D 34988092 34998745 10653 True 555.000000 1203 87.627571 1065 5271 7 chr2D.!!$R3 4206
3 TraesCS2D01G283400 chr2D 585473465 585477114 3649 False 486.000000 1173 85.741200 979 5278 5 chr2D.!!$F3 4299
4 TraesCS2D01G283400 chr2D 585501811 585502769 958 False 348.000000 407 85.684000 1064 2338 2 chr2D.!!$F4 1274
5 TraesCS2D01G283400 chr2B 425348315 425354274 5959 False 1160.657143 4468 93.740143 1 6239 7 chr2B.!!$F1 6238
6 TraesCS2D01G283400 chr2B 705889556 705890299 743 True 811.000000 811 86.382000 4526 5271 1 chr2B.!!$R3 745
7 TraesCS2D01G283400 chr2B 57664597 57674472 9875 True 586.000000 1225 86.640833 1012 5271 6 chr2B.!!$R4 4259
8 TraesCS2D01G283400 chr2B 706414779 706418514 3735 False 491.750000 1088 86.292750 1062 5348 4 chr2B.!!$F2 4286
9 TraesCS2D01G283400 chr2A 478757434 478763588 6154 False 830.600000 2721 93.065700 1 6239 10 chr2A.!!$F1 6238
10 TraesCS2D01G283400 chr2A 719539088 719541238 2150 False 712.500000 1190 87.890500 3071 5276 2 chr2A.!!$F2 2205
11 TraesCS2D01G283400 chr2A 38309367 38314147 4780 True 620.000000 1214 88.498000 1065 5271 3 chr2A.!!$R2 4206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 625 0.096454 GCTGGATTTAACCGTCGTGC 59.904 55.000 0.00 0.0 0.00 5.34 F
1776 12012 0.108138 CCCCTTTTCGTCGAGCTCAT 60.108 55.000 15.40 0.0 0.00 2.90 F
1856 12101 2.419851 CCAGGTTTTGGTGTTGCATTGT 60.420 45.455 0.00 0.0 42.41 2.71 F
1883 12129 2.659428 GAGGGGTTGCTATGATTGCTT 58.341 47.619 0.00 0.0 0.00 3.91 F
3372 16546 0.613777 CGGCCTTTAACCACTCCTCT 59.386 55.000 0.00 0.0 0.00 3.69 F
4077 17683 2.873170 TCACAAGCTTATGTTTCGCG 57.127 45.000 4.34 0.0 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 12101 0.253160 ATAGCAACCCCTCCCACTCA 60.253 55.000 0.00 0.0 0.00 3.41 R
2967 16089 4.551388 CTGTACAGACAAGAGGAACTGTC 58.449 47.826 18.45 0.0 42.39 3.51 R
3082 16235 7.384932 GCTAACTTGTTTTCTGCAACCATAAAT 59.615 33.333 0.00 0.0 0.00 1.40 R
3434 16609 8.741603 TGGAATAGGTAAACTTTTAGTATGGC 57.258 34.615 0.00 0.0 0.00 4.40 R
4833 18446 1.117150 ATGCCATCAGGATTGCCAAC 58.883 50.000 3.26 0.0 36.89 3.77 R
5708 19342 0.108138 AGCACTAACCGGCATCTGTC 60.108 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.551270 GACGGCAGTGAAAGCGTG 59.449 61.111 0.00 0.00 0.00 5.34
146 150 0.458260 GCTCGTTCTCTTCTCCCTCC 59.542 60.000 0.00 0.00 0.00 4.30
147 151 0.736053 CTCGTTCTCTTCTCCCTCCG 59.264 60.000 0.00 0.00 0.00 4.63
149 153 0.736053 CGTTCTCTTCTCCCTCCGAG 59.264 60.000 0.00 0.00 40.30 4.63
150 154 1.842052 GTTCTCTTCTCCCTCCGAGT 58.158 55.000 0.00 0.00 39.84 4.18
153 157 1.566703 TCTCTTCTCCCTCCGAGTCAT 59.433 52.381 0.00 0.00 39.84 3.06
154 158 2.024846 TCTCTTCTCCCTCCGAGTCATT 60.025 50.000 0.00 0.00 39.84 2.57
155 159 2.763448 CTCTTCTCCCTCCGAGTCATTT 59.237 50.000 0.00 0.00 39.84 2.32
156 160 3.173965 TCTTCTCCCTCCGAGTCATTTT 58.826 45.455 0.00 0.00 39.84 1.82
157 161 3.583086 TCTTCTCCCTCCGAGTCATTTTT 59.417 43.478 0.00 0.00 39.84 1.94
158 162 3.611766 TCTCCCTCCGAGTCATTTTTC 57.388 47.619 0.00 0.00 39.84 2.29
159 163 3.173965 TCTCCCTCCGAGTCATTTTTCT 58.826 45.455 0.00 0.00 39.84 2.52
161 165 4.041691 TCTCCCTCCGAGTCATTTTTCTTT 59.958 41.667 0.00 0.00 39.84 2.52
162 166 4.725490 TCCCTCCGAGTCATTTTTCTTTT 58.275 39.130 0.00 0.00 0.00 2.27
164 168 4.518970 CCCTCCGAGTCATTTTTCTTTTGA 59.481 41.667 0.00 0.00 0.00 2.69
165 169 5.335191 CCCTCCGAGTCATTTTTCTTTTGAG 60.335 44.000 0.00 0.00 0.00 3.02
166 170 5.108385 TCCGAGTCATTTTTCTTTTGAGC 57.892 39.130 0.00 0.00 0.00 4.26
167 171 4.578516 TCCGAGTCATTTTTCTTTTGAGCA 59.421 37.500 0.00 0.00 0.00 4.26
168 172 5.067153 TCCGAGTCATTTTTCTTTTGAGCAA 59.933 36.000 0.00 0.00 0.00 3.91
169 173 5.748152 CCGAGTCATTTTTCTTTTGAGCAAA 59.252 36.000 0.00 0.00 0.00 3.68
170 174 6.291796 CCGAGTCATTTTTCTTTTGAGCAAAC 60.292 38.462 0.00 0.00 0.00 2.93
171 175 6.473455 CGAGTCATTTTTCTTTTGAGCAAACT 59.527 34.615 0.00 0.00 0.00 2.66
172 176 7.305648 CGAGTCATTTTTCTTTTGAGCAAACTC 60.306 37.037 0.00 0.00 43.76 3.01
214 218 2.887568 CAGCAGATCCACCGACGC 60.888 66.667 0.00 0.00 0.00 5.19
371 376 4.643387 GTGGTGGGCTCAACCGCT 62.643 66.667 0.00 0.00 40.83 5.52
372 377 4.329545 TGGTGGGCTCAACCGCTC 62.330 66.667 0.00 0.00 40.83 5.03
374 379 2.281484 GTGGGCTCAACCGCTCAA 60.281 61.111 0.00 0.00 43.01 3.02
375 380 2.281484 TGGGCTCAACCGCTCAAC 60.281 61.111 0.00 0.00 37.47 3.18
376 381 3.056328 GGGCTCAACCGCTCAACC 61.056 66.667 0.00 0.00 40.62 3.77
377 382 3.423154 GGCTCAACCGCTCAACCG 61.423 66.667 0.00 0.00 0.00 4.44
463 517 6.849502 AGACGAAATCAAACTCTGTATACGA 58.150 36.000 0.00 0.00 0.00 3.43
464 518 7.310664 AGACGAAATCAAACTCTGTATACGAA 58.689 34.615 0.00 0.00 0.00 3.85
465 519 7.811236 AGACGAAATCAAACTCTGTATACGAAA 59.189 33.333 0.00 0.00 0.00 3.46
466 520 8.301730 ACGAAATCAAACTCTGTATACGAAAA 57.698 30.769 0.00 0.00 0.00 2.29
467 521 8.932791 ACGAAATCAAACTCTGTATACGAAAAT 58.067 29.630 0.00 0.00 0.00 1.82
468 522 9.199184 CGAAATCAAACTCTGTATACGAAAATG 57.801 33.333 0.00 0.00 0.00 2.32
469 523 8.895932 AAATCAAACTCTGTATACGAAAATGC 57.104 30.769 0.00 0.00 0.00 3.56
471 525 7.667043 TCAAACTCTGTATACGAAAATGCTT 57.333 32.000 0.00 0.00 0.00 3.91
472 526 7.739295 TCAAACTCTGTATACGAAAATGCTTC 58.261 34.615 0.00 0.00 0.00 3.86
473 527 7.386573 TCAAACTCTGTATACGAAAATGCTTCA 59.613 33.333 0.00 0.00 0.00 3.02
474 528 6.648725 ACTCTGTATACGAAAATGCTTCAC 57.351 37.500 0.00 0.00 0.00 3.18
476 530 6.090898 ACTCTGTATACGAAAATGCTTCACAC 59.909 38.462 0.00 0.00 0.00 3.82
478 532 5.922546 TGTATACGAAAATGCTTCACACAC 58.077 37.500 0.00 0.00 0.00 3.82
479 533 2.383298 ACGAAAATGCTTCACACACG 57.617 45.000 0.00 0.00 0.00 4.49
480 534 1.937223 ACGAAAATGCTTCACACACGA 59.063 42.857 0.00 0.00 0.00 4.35
481 535 2.286184 ACGAAAATGCTTCACACACGAC 60.286 45.455 0.00 0.00 0.00 4.34
482 536 2.286125 CGAAAATGCTTCACACACGACA 60.286 45.455 0.00 0.00 0.00 4.35
483 537 3.291585 GAAAATGCTTCACACACGACAG 58.708 45.455 0.00 0.00 0.00 3.51
484 538 1.953559 AATGCTTCACACACGACAGT 58.046 45.000 0.00 0.00 0.00 3.55
494 548 2.966324 CACGACAGTGTTTGGACGA 58.034 52.632 8.15 0.00 43.15 4.20
495 549 1.497991 CACGACAGTGTTTGGACGAT 58.502 50.000 8.15 0.00 43.15 3.73
497 551 3.054166 CACGACAGTGTTTGGACGATAA 58.946 45.455 8.15 0.00 43.15 1.75
498 552 3.054878 ACGACAGTGTTTGGACGATAAC 58.945 45.455 8.15 0.00 35.67 1.89
499 553 3.243636 ACGACAGTGTTTGGACGATAACT 60.244 43.478 8.15 0.00 35.67 2.24
500 554 3.121279 CGACAGTGTTTGGACGATAACTG 59.879 47.826 0.00 0.00 40.61 3.16
501 555 2.806244 ACAGTGTTTGGACGATAACTGC 59.194 45.455 0.00 0.00 38.84 4.40
502 556 2.805671 CAGTGTTTGGACGATAACTGCA 59.194 45.455 0.00 0.00 0.00 4.41
503 557 2.806244 AGTGTTTGGACGATAACTGCAC 59.194 45.455 0.00 0.00 0.00 4.57
504 558 1.795872 TGTTTGGACGATAACTGCACG 59.204 47.619 0.00 0.00 0.00 5.34
506 560 2.665649 TTGGACGATAACTGCACGAT 57.334 45.000 0.24 0.00 0.00 3.73
507 561 2.203800 TGGACGATAACTGCACGATC 57.796 50.000 0.24 0.00 0.00 3.69
508 562 1.121240 GGACGATAACTGCACGATCG 58.879 55.000 14.88 14.88 46.12 3.69
509 563 1.268386 GGACGATAACTGCACGATCGA 60.268 52.381 24.34 0.00 44.04 3.59
511 565 1.268589 ACGATAACTGCACGATCGAGG 60.269 52.381 24.34 14.40 44.04 4.63
512 566 1.772182 GATAACTGCACGATCGAGGG 58.228 55.000 24.34 11.76 0.00 4.30
513 567 1.337071 GATAACTGCACGATCGAGGGA 59.663 52.381 24.34 13.49 0.00 4.20
514 568 1.399714 TAACTGCACGATCGAGGGAT 58.600 50.000 24.34 5.75 34.96 3.85
515 569 0.103208 AACTGCACGATCGAGGGATC 59.897 55.000 24.34 1.28 44.63 3.36
517 571 1.738346 CTGCACGATCGAGGGATCCA 61.738 60.000 24.34 5.89 45.16 3.41
518 572 1.006805 GCACGATCGAGGGATCCAG 60.007 63.158 24.34 4.35 45.16 3.86
519 573 1.006805 CACGATCGAGGGATCCAGC 60.007 63.158 24.34 3.36 45.16 4.85
521 575 2.653702 GATCGAGGGATCCAGCGG 59.346 66.667 20.84 5.52 42.72 5.52
542 596 4.383861 CTGCTGGGCTGTGCTCGA 62.384 66.667 0.00 0.00 0.00 4.04
543 597 4.687215 TGCTGGGCTGTGCTCGAC 62.687 66.667 0.00 0.00 0.00 4.20
546 600 1.376424 CTGGGCTGTGCTCGACATT 60.376 57.895 0.00 0.00 32.74 2.71
547 601 1.364626 CTGGGCTGTGCTCGACATTC 61.365 60.000 0.00 0.00 32.74 2.67
549 603 0.674895 GGGCTGTGCTCGACATTCTT 60.675 55.000 0.00 0.00 32.74 2.52
550 604 0.723981 GGCTGTGCTCGACATTCTTC 59.276 55.000 0.00 0.00 32.74 2.87
551 605 0.368227 GCTGTGCTCGACATTCTTCG 59.632 55.000 0.00 0.00 40.53 3.79
552 606 0.994995 CTGTGCTCGACATTCTTCGG 59.005 55.000 0.00 0.00 39.58 4.30
553 607 1.014044 TGTGCTCGACATTCTTCGGC 61.014 55.000 0.00 0.00 39.58 5.54
554 608 0.737715 GTGCTCGACATTCTTCGGCT 60.738 55.000 0.00 0.00 39.58 5.52
555 609 0.737367 TGCTCGACATTCTTCGGCTG 60.737 55.000 0.00 0.00 39.58 4.85
556 610 1.424493 GCTCGACATTCTTCGGCTGG 61.424 60.000 0.00 0.00 39.58 4.85
557 611 0.173481 CTCGACATTCTTCGGCTGGA 59.827 55.000 0.00 0.00 39.58 3.86
558 612 0.824109 TCGACATTCTTCGGCTGGAT 59.176 50.000 0.00 0.00 39.58 3.41
560 614 2.009774 CGACATTCTTCGGCTGGATTT 58.990 47.619 0.00 0.00 35.26 2.17
562 616 3.621268 CGACATTCTTCGGCTGGATTTAA 59.379 43.478 0.00 0.00 35.26 1.52
564 618 3.694566 ACATTCTTCGGCTGGATTTAACC 59.305 43.478 0.00 0.00 0.00 2.85
565 619 2.018542 TCTTCGGCTGGATTTAACCG 57.981 50.000 0.00 0.00 46.97 4.44
567 621 1.664151 CTTCGGCTGGATTTAACCGTC 59.336 52.381 0.00 0.00 45.76 4.79
568 622 0.458889 TCGGCTGGATTTAACCGTCG 60.459 55.000 0.00 0.00 45.76 5.12
569 623 0.738412 CGGCTGGATTTAACCGTCGT 60.738 55.000 0.00 0.00 40.77 4.34
570 624 0.725117 GGCTGGATTTAACCGTCGTG 59.275 55.000 0.00 0.00 0.00 4.35
571 625 0.096454 GCTGGATTTAACCGTCGTGC 59.904 55.000 0.00 0.00 0.00 5.34
572 626 1.434555 CTGGATTTAACCGTCGTGCA 58.565 50.000 0.00 0.00 0.00 4.57
573 627 1.127951 CTGGATTTAACCGTCGTGCAC 59.872 52.381 6.82 6.82 0.00 4.57
574 628 1.149987 GGATTTAACCGTCGTGCACA 58.850 50.000 18.64 0.81 0.00 4.57
575 629 1.532007 GGATTTAACCGTCGTGCACAA 59.468 47.619 18.64 0.00 0.00 3.33
576 630 2.412325 GGATTTAACCGTCGTGCACAAG 60.412 50.000 18.64 6.94 0.00 3.16
579 633 0.935831 TAACCGTCGTGCACAAGTCG 60.936 55.000 18.64 14.15 0.00 4.18
581 635 2.645510 CCGTCGTGCACAAGTCGTC 61.646 63.158 18.64 0.00 0.00 4.20
582 636 2.645510 CGTCGTGCACAAGTCGTCC 61.646 63.158 18.64 0.00 0.00 4.79
583 637 1.590525 GTCGTGCACAAGTCGTCCA 60.591 57.895 18.64 0.00 0.00 4.02
586 640 0.315869 CGTGCACAAGTCGTCCAAAC 60.316 55.000 18.64 0.00 0.00 2.93
587 641 1.014352 GTGCACAAGTCGTCCAAACT 58.986 50.000 13.17 0.00 0.00 2.66
588 642 1.400494 GTGCACAAGTCGTCCAAACTT 59.600 47.619 13.17 0.00 37.44 2.66
589 643 2.088423 TGCACAAGTCGTCCAAACTTT 58.912 42.857 0.00 0.00 34.79 2.66
590 644 3.064271 GTGCACAAGTCGTCCAAACTTTA 59.936 43.478 13.17 0.00 34.79 1.85
592 646 4.024387 TGCACAAGTCGTCCAAACTTTATC 60.024 41.667 0.00 0.00 34.79 1.75
593 647 4.698276 CACAAGTCGTCCAAACTTTATCG 58.302 43.478 0.00 0.00 34.79 2.92
594 648 4.210537 CACAAGTCGTCCAAACTTTATCGT 59.789 41.667 0.00 0.00 34.79 3.73
595 649 4.446719 ACAAGTCGTCCAAACTTTATCGTC 59.553 41.667 0.00 0.00 34.79 4.20
596 650 3.582780 AGTCGTCCAAACTTTATCGTCC 58.417 45.455 0.00 0.00 0.00 4.79
597 651 2.669924 GTCGTCCAAACTTTATCGTCCC 59.330 50.000 0.00 0.00 0.00 4.46
598 652 2.004733 CGTCCAAACTTTATCGTCCCC 58.995 52.381 0.00 0.00 0.00 4.81
599 653 2.613474 CGTCCAAACTTTATCGTCCCCA 60.613 50.000 0.00 0.00 0.00 4.96
601 655 4.681244 CGTCCAAACTTTATCGTCCCCATA 60.681 45.833 0.00 0.00 0.00 2.74
602 656 4.814771 GTCCAAACTTTATCGTCCCCATAG 59.185 45.833 0.00 0.00 0.00 2.23
603 657 3.564225 CCAAACTTTATCGTCCCCATAGC 59.436 47.826 0.00 0.00 0.00 2.97
604 658 4.196193 CAAACTTTATCGTCCCCATAGCA 58.804 43.478 0.00 0.00 0.00 3.49
605 659 3.470645 ACTTTATCGTCCCCATAGCAC 57.529 47.619 0.00 0.00 0.00 4.40
606 660 3.039011 ACTTTATCGTCCCCATAGCACT 58.961 45.455 0.00 0.00 0.00 4.40
607 661 3.181465 ACTTTATCGTCCCCATAGCACTG 60.181 47.826 0.00 0.00 0.00 3.66
610 664 1.227380 CGTCCCCATAGCACTGCTC 60.227 63.158 6.86 0.00 40.44 4.26
612 666 1.003442 TCCCCATAGCACTGCTCCT 59.997 57.895 6.86 0.00 40.44 3.69
613 667 1.050988 TCCCCATAGCACTGCTCCTC 61.051 60.000 6.86 0.00 40.44 3.71
614 668 1.053264 CCCCATAGCACTGCTCCTCT 61.053 60.000 6.86 0.00 40.44 3.69
617 671 2.034878 CCATAGCACTGCTCCTCTGTA 58.965 52.381 6.86 0.00 40.44 2.74
619 673 3.829026 CCATAGCACTGCTCCTCTGTATA 59.171 47.826 6.86 0.00 40.44 1.47
662 716 6.677781 AAATCAAACTCTGAACGTCTGAAA 57.322 33.333 0.00 0.00 37.67 2.69
709 765 3.626924 ACAGGTGGGTCCGCACTC 61.627 66.667 13.26 5.04 41.99 3.51
748 819 2.215196 CCGAAAGAAAAGGTCACGGAA 58.785 47.619 0.00 0.00 39.99 4.30
1179 4529 0.249911 ACAAGCTCAACCTCACGGTC 60.250 55.000 0.00 0.00 44.73 4.79
1392 11595 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
1396 11599 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1397 11600 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1398 11601 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1399 11602 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1401 11604 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1402 11605 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1403 11606 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1404 11607 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1405 11608 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1406 11609 4.758165 TCCGTCCCAAAATTCTTGTCTTAC 59.242 41.667 0.00 0.00 0.00 2.34
1407 11610 4.517453 CCGTCCCAAAATTCTTGTCTTACA 59.483 41.667 0.00 0.00 0.00 2.41
1411 11614 7.114811 CGTCCCAAAATTCTTGTCTTACATTTG 59.885 37.037 0.00 0.00 0.00 2.32
1412 11615 7.926018 GTCCCAAAATTCTTGTCTTACATTTGT 59.074 33.333 0.00 0.00 27.14 2.83
1413 11616 8.141268 TCCCAAAATTCTTGTCTTACATTTGTC 58.859 33.333 0.00 0.00 27.14 3.18
1414 11617 8.143835 CCCAAAATTCTTGTCTTACATTTGTCT 58.856 33.333 0.00 0.00 27.14 3.41
1477 11680 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
1478 11681 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
1479 11682 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1480 11683 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1481 11684 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1482 11685 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
1490 11693 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1491 11694 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1492 11695 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1493 11696 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1494 11697 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
1495 11698 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1496 11699 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1497 11700 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1498 11701 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
1499 11702 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1500 11703 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
1501 11704 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
1502 11705 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1503 11706 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
1504 11707 0.410663 TTTGGGACGGAGGGAGTAGA 59.589 55.000 0.00 0.00 0.00 2.59
1505 11708 0.635009 TTGGGACGGAGGGAGTAGAT 59.365 55.000 0.00 0.00 0.00 1.98
1506 11709 0.635009 TGGGACGGAGGGAGTAGATT 59.365 55.000 0.00 0.00 0.00 2.40
1507 11710 1.041437 GGGACGGAGGGAGTAGATTG 58.959 60.000 0.00 0.00 0.00 2.67
1508 11711 0.389757 GGACGGAGGGAGTAGATTGC 59.610 60.000 0.00 0.00 0.00 3.56
1509 11712 1.404843 GACGGAGGGAGTAGATTGCT 58.595 55.000 0.00 0.00 0.00 3.91
1553 11756 1.361668 ATGCGATTCTGCCGTGTGAC 61.362 55.000 0.00 0.00 0.00 3.67
1625 11828 6.125029 CCTTCCTGAATTGTGGAACTATGAT 58.875 40.000 5.02 0.00 37.42 2.45
1636 11839 8.408043 TTGTGGAACTATGATTCTCATTTGTT 57.592 30.769 0.00 2.31 32.72 2.83
1637 11840 7.819644 TGTGGAACTATGATTCTCATTTGTTG 58.180 34.615 10.66 0.00 32.72 3.33
1638 11841 7.448161 TGTGGAACTATGATTCTCATTTGTTGT 59.552 33.333 10.66 0.00 32.72 3.32
1642 11845 9.897744 GAACTATGATTCTCATTTGTTGTTTCA 57.102 29.630 10.66 0.00 38.26 2.69
1649 11852 9.387123 GATTCTCATTTGTTGTTTCAGAAGTAC 57.613 33.333 0.00 0.00 0.00 2.73
1653 11889 2.841215 TGTTGTTTCAGAAGTACGGGG 58.159 47.619 0.00 0.00 0.00 5.73
1665 11901 6.608405 TCAGAAGTACGGGGTATCTATTTTGA 59.392 38.462 0.00 0.00 0.00 2.69
1724 11960 7.027161 GGGTTATAGTGTTGCATTTGTACTTG 58.973 38.462 0.00 0.00 0.00 3.16
1759 11995 0.668535 GCCGAATGATAGTTTGCCCC 59.331 55.000 0.00 0.00 0.00 5.80
1763 11999 3.023832 CGAATGATAGTTTGCCCCCTTT 58.976 45.455 0.00 0.00 0.00 3.11
1776 12012 0.108138 CCCCTTTTCGTCGAGCTCAT 60.108 55.000 15.40 0.00 0.00 2.90
1788 12024 2.959030 TCGAGCTCATACTATGCCAACT 59.041 45.455 15.40 0.00 0.00 3.16
1823 12059 7.818930 TCTTGATGCAGGGAATGTTAAATTTTC 59.181 33.333 0.00 0.00 0.00 2.29
1856 12101 2.419851 CCAGGTTTTGGTGTTGCATTGT 60.420 45.455 0.00 0.00 42.41 2.71
1883 12129 2.659428 GAGGGGTTGCTATGATTGCTT 58.341 47.619 0.00 0.00 0.00 3.91
2341 13061 7.175641 AGCTTGCAGAGTAAGAAACATACATTT 59.824 33.333 0.00 0.00 0.00 2.32
2350 13070 8.440833 AGTAAGAAACATACATTTGCTCGTTAC 58.559 33.333 0.00 0.00 0.00 2.50
2354 13074 8.995220 AGAAACATACATTTGCTCGTTACTTTA 58.005 29.630 0.00 0.00 0.00 1.85
2358 13078 5.607119 ACATTTGCTCGTTACTTTAGTGG 57.393 39.130 0.00 0.00 0.00 4.00
2431 13151 9.965824 CTTGTTGAGTATGTTGTCCTTAAATTT 57.034 29.630 0.00 0.00 0.00 1.82
2473 13193 8.727910 ACACAATCAGATATTCATATGCATGAC 58.272 33.333 10.16 0.00 40.94 3.06
2667 13505 6.183360 GCTATGAGTATTTTTGGCACCATCTT 60.183 38.462 0.00 0.00 0.00 2.40
2722 13602 2.911484 AGATCGATGGCACCTTTTCTC 58.089 47.619 0.54 0.00 0.00 2.87
2733 13613 4.023963 GGCACCTTTTCTCTGTACAGAAAC 60.024 45.833 25.14 6.66 41.20 2.78
2829 15395 6.115448 AGATGTGCTAGGTAGTTTTGTCTT 57.885 37.500 0.00 0.00 0.00 3.01
2832 15398 7.502561 AGATGTGCTAGGTAGTTTTGTCTTTTT 59.497 33.333 0.00 0.00 0.00 1.94
2862 15428 6.311200 CCTTGTAAAGCACAAATAGGAAATGC 59.689 38.462 0.00 0.00 46.37 3.56
2864 15430 4.888326 AAAGCACAAATAGGAAATGCCA 57.112 36.364 0.00 0.00 40.02 4.92
2868 15434 3.798337 GCACAAATAGGAAATGCCAATCG 59.202 43.478 0.00 0.00 40.02 3.34
2967 16089 4.578105 GGGTGGAGCTGAAGATAGAAAATG 59.422 45.833 0.00 0.00 0.00 2.32
3277 16434 8.073467 TGTTTTTGTCATTTCCTCTAAGGTTT 57.927 30.769 0.00 0.00 36.53 3.27
3367 16541 0.893727 CTTGGCGGCCTTTAACCACT 60.894 55.000 21.46 0.00 0.00 4.00
3372 16546 0.613777 CGGCCTTTAACCACTCCTCT 59.386 55.000 0.00 0.00 0.00 3.69
3647 16826 5.166398 GGAAGCAATGATTTCAAAGGACTG 58.834 41.667 0.00 0.00 0.00 3.51
4034 17640 8.142994 TGAAACTATTCTTTGTTCACAGACTC 57.857 34.615 0.00 0.00 36.48 3.36
4059 17665 6.367422 CACCACTCTTTACTCATCAACTCTTC 59.633 42.308 0.00 0.00 0.00 2.87
4077 17683 2.873170 TCACAAGCTTATGTTTCGCG 57.127 45.000 4.34 0.00 0.00 5.87
4725 18338 3.244249 GCAGGACTTCAAGACTGGTTACT 60.244 47.826 13.31 0.00 0.00 2.24
4821 18434 3.117663 TCTCACCTTTTGGCTTTACTGGT 60.118 43.478 0.00 0.00 45.59 4.00
4833 18446 2.107950 TTACTGGTCGGCCTTTGATG 57.892 50.000 7.97 0.00 35.27 3.07
4901 18514 1.818060 CGTGAGATGGCAATTTTGGGA 59.182 47.619 0.00 0.00 0.00 4.37
5030 18643 1.999295 TCCAAATTCATCCCACTCCCA 59.001 47.619 0.00 0.00 0.00 4.37
5317 18931 4.963318 TGTTTTATTGGGATGCCACAAA 57.037 36.364 4.96 6.79 0.00 2.83
5425 19041 3.223435 TGTTGATATCTCGACCCCTCTC 58.777 50.000 3.98 0.00 35.23 3.20
5426 19042 3.117474 TGTTGATATCTCGACCCCTCTCT 60.117 47.826 3.98 0.00 35.23 3.10
5438 19054 0.034059 CCCTCTCTGTTGTCTTGCGT 59.966 55.000 0.00 0.00 0.00 5.24
5439 19055 1.541233 CCCTCTCTGTTGTCTTGCGTT 60.541 52.381 0.00 0.00 0.00 4.84
5471 19087 2.309613 TCCAATGCTGCAGTTTTCACT 58.690 42.857 16.64 0.00 0.00 3.41
5621 19255 2.388735 TCCACTATTCGATGGCTCTGT 58.611 47.619 0.00 0.00 35.81 3.41
5631 19265 2.807967 CGATGGCTCTGTTCTGAAAACA 59.192 45.455 0.00 0.00 0.00 2.83
5664 19298 6.640518 ACTTGCTTGATTATCCTCGAACTAA 58.359 36.000 0.00 0.00 0.00 2.24
5665 19299 6.758886 ACTTGCTTGATTATCCTCGAACTAAG 59.241 38.462 0.00 0.00 0.00 2.18
5666 19300 6.465439 TGCTTGATTATCCTCGAACTAAGA 57.535 37.500 0.00 0.00 0.00 2.10
5667 19301 6.507900 TGCTTGATTATCCTCGAACTAAGAG 58.492 40.000 0.00 0.00 35.60 2.85
5668 19302 5.404066 GCTTGATTATCCTCGAACTAAGAGC 59.596 44.000 0.00 0.00 34.56 4.09
5669 19303 6.465439 TTGATTATCCTCGAACTAAGAGCA 57.535 37.500 0.00 0.00 34.56 4.26
5670 19304 6.656632 TGATTATCCTCGAACTAAGAGCAT 57.343 37.500 0.00 0.00 34.56 3.79
5671 19305 6.450545 TGATTATCCTCGAACTAAGAGCATG 58.549 40.000 0.00 0.00 34.56 4.06
5672 19306 6.265422 TGATTATCCTCGAACTAAGAGCATGA 59.735 38.462 0.00 0.00 34.56 3.07
5673 19307 6.656632 TTATCCTCGAACTAAGAGCATGAT 57.343 37.500 0.00 0.00 34.56 2.45
5674 19308 5.543507 ATCCTCGAACTAAGAGCATGATT 57.456 39.130 0.00 0.00 34.56 2.57
5675 19309 4.686972 TCCTCGAACTAAGAGCATGATTG 58.313 43.478 0.00 0.00 34.56 2.67
5676 19310 3.806521 CCTCGAACTAAGAGCATGATTGG 59.193 47.826 0.00 0.00 34.56 3.16
5677 19311 4.437239 CTCGAACTAAGAGCATGATTGGT 58.563 43.478 0.00 0.00 35.95 3.67
5678 19312 4.832248 TCGAACTAAGAGCATGATTGGTT 58.168 39.130 0.00 1.97 33.44 3.67
5679 19313 5.245531 TCGAACTAAGAGCATGATTGGTTT 58.754 37.500 0.00 0.00 31.26 3.27
5680 19314 5.122239 TCGAACTAAGAGCATGATTGGTTTG 59.878 40.000 0.00 6.41 34.37 2.93
5681 19315 5.122239 CGAACTAAGAGCATGATTGGTTTGA 59.878 40.000 12.78 0.00 34.76 2.69
5682 19316 6.183360 CGAACTAAGAGCATGATTGGTTTGAT 60.183 38.462 12.78 0.00 34.76 2.57
5683 19317 6.446781 ACTAAGAGCATGATTGGTTTGATG 57.553 37.500 0.00 0.00 32.62 3.07
5684 19318 5.948162 ACTAAGAGCATGATTGGTTTGATGT 59.052 36.000 0.00 0.00 32.62 3.06
5685 19319 5.733620 AAGAGCATGATTGGTTTGATGTT 57.266 34.783 0.00 0.00 32.62 2.71
5686 19320 6.839124 AAGAGCATGATTGGTTTGATGTTA 57.161 33.333 0.00 0.00 32.62 2.41
5687 19321 6.839124 AGAGCATGATTGGTTTGATGTTAA 57.161 33.333 0.00 0.00 32.62 2.01
5688 19322 7.230849 AGAGCATGATTGGTTTGATGTTAAA 57.769 32.000 0.00 0.00 32.62 1.52
5689 19323 7.669427 AGAGCATGATTGGTTTGATGTTAAAA 58.331 30.769 0.00 0.00 32.62 1.52
5690 19324 8.149647 AGAGCATGATTGGTTTGATGTTAAAAA 58.850 29.630 0.00 0.00 32.62 1.94
5691 19325 8.851541 AGCATGATTGGTTTGATGTTAAAAAT 57.148 26.923 0.00 0.00 0.00 1.82
5692 19326 9.287373 AGCATGATTGGTTTGATGTTAAAAATT 57.713 25.926 0.00 0.00 0.00 1.82
5693 19327 9.332301 GCATGATTGGTTTGATGTTAAAAATTG 57.668 29.630 0.00 0.00 0.00 2.32
5694 19328 9.828852 CATGATTGGTTTGATGTTAAAAATTGG 57.171 29.630 0.00 0.00 0.00 3.16
5695 19329 7.869800 TGATTGGTTTGATGTTAAAAATTGGC 58.130 30.769 0.00 0.00 0.00 4.52
5696 19330 7.500227 TGATTGGTTTGATGTTAAAAATTGGCA 59.500 29.630 0.00 0.00 0.00 4.92
5697 19331 7.814264 TTGGTTTGATGTTAAAAATTGGCAT 57.186 28.000 0.00 0.00 0.00 4.40
5698 19332 7.199541 TGGTTTGATGTTAAAAATTGGCATG 57.800 32.000 0.00 0.00 0.00 4.06
5699 19333 6.085573 GGTTTGATGTTAAAAATTGGCATGC 58.914 36.000 9.90 9.90 0.00 4.06
5700 19334 5.876612 TTGATGTTAAAAATTGGCATGCC 57.123 34.783 30.54 30.54 0.00 4.40
5701 19335 4.903054 TGATGTTAAAAATTGGCATGCCA 58.097 34.783 35.59 35.59 45.63 4.92
5711 19345 2.924757 TGGCATGCCAAAATTTGACA 57.075 40.000 36.95 9.68 44.12 3.58
5712 19346 2.768698 TGGCATGCCAAAATTTGACAG 58.231 42.857 36.95 0.00 44.12 3.51
5713 19347 2.367894 TGGCATGCCAAAATTTGACAGA 59.632 40.909 36.95 8.86 44.12 3.41
5714 19348 3.008157 TGGCATGCCAAAATTTGACAGAT 59.992 39.130 36.95 0.00 44.12 2.90
5715 19349 3.372822 GGCATGCCAAAATTTGACAGATG 59.627 43.478 32.08 0.00 35.81 2.90
5716 19350 3.181514 GCATGCCAAAATTTGACAGATGC 60.182 43.478 6.36 6.10 0.00 3.91
5717 19351 3.042871 TGCCAAAATTTGACAGATGCC 57.957 42.857 7.37 0.00 0.00 4.40
5718 19352 1.994779 GCCAAAATTTGACAGATGCCG 59.005 47.619 7.37 0.00 0.00 5.69
5719 19353 2.609350 CCAAAATTTGACAGATGCCGG 58.391 47.619 7.37 0.00 0.00 6.13
5720 19354 2.029110 CCAAAATTTGACAGATGCCGGT 60.029 45.455 7.37 0.00 0.00 5.28
5721 19355 3.554752 CCAAAATTTGACAGATGCCGGTT 60.555 43.478 7.37 0.00 0.00 4.44
5722 19356 4.321601 CCAAAATTTGACAGATGCCGGTTA 60.322 41.667 7.37 0.00 0.00 2.85
5723 19357 4.701956 AAATTTGACAGATGCCGGTTAG 57.298 40.909 1.90 0.00 0.00 2.34
5724 19358 2.851263 TTTGACAGATGCCGGTTAGT 57.149 45.000 1.90 0.00 0.00 2.24
5725 19359 2.093306 TTGACAGATGCCGGTTAGTG 57.907 50.000 1.90 0.00 0.00 2.74
5726 19360 0.391130 TGACAGATGCCGGTTAGTGC 60.391 55.000 1.90 0.00 0.00 4.40
5727 19361 0.108138 GACAGATGCCGGTTAGTGCT 60.108 55.000 1.90 0.00 0.00 4.40
5728 19362 0.324943 ACAGATGCCGGTTAGTGCTT 59.675 50.000 1.90 0.00 0.00 3.91
5729 19363 0.729116 CAGATGCCGGTTAGTGCTTG 59.271 55.000 1.90 0.00 0.00 4.01
5730 19364 0.392998 AGATGCCGGTTAGTGCTTGG 60.393 55.000 1.90 0.00 0.00 3.61
5731 19365 0.676782 GATGCCGGTTAGTGCTTGGT 60.677 55.000 1.90 0.00 0.00 3.67
5732 19366 0.251165 ATGCCGGTTAGTGCTTGGTT 60.251 50.000 1.90 0.00 0.00 3.67
5733 19367 1.169661 TGCCGGTTAGTGCTTGGTTG 61.170 55.000 1.90 0.00 0.00 3.77
5734 19368 1.862602 GCCGGTTAGTGCTTGGTTGG 61.863 60.000 1.90 0.00 0.00 3.77
5735 19369 0.536460 CCGGTTAGTGCTTGGTTGGT 60.536 55.000 0.00 0.00 0.00 3.67
5736 19370 1.314730 CGGTTAGTGCTTGGTTGGTT 58.685 50.000 0.00 0.00 0.00 3.67
5737 19371 2.496111 CGGTTAGTGCTTGGTTGGTTA 58.504 47.619 0.00 0.00 0.00 2.85
5738 19372 2.224784 CGGTTAGTGCTTGGTTGGTTAC 59.775 50.000 0.00 0.00 0.00 2.50
5750 19384 3.758425 GGTTGGTTACCATGTTACCTGT 58.242 45.455 14.00 0.00 46.92 4.00
5751 19385 3.754850 GGTTGGTTACCATGTTACCTGTC 59.245 47.826 14.00 0.00 46.92 3.51
5752 19386 4.391155 GTTGGTTACCATGTTACCTGTCA 58.609 43.478 4.38 0.00 36.36 3.58
5753 19387 4.708576 TGGTTACCATGTTACCTGTCAA 57.291 40.909 0.00 0.00 36.36 3.18
5754 19388 4.391155 TGGTTACCATGTTACCTGTCAAC 58.609 43.478 0.00 0.00 36.36 3.18
5755 19389 3.754850 GGTTACCATGTTACCTGTCAACC 59.245 47.826 0.00 5.42 33.13 3.77
5756 19390 4.506095 GGTTACCATGTTACCTGTCAACCT 60.506 45.833 0.00 0.00 33.13 3.50
5757 19391 3.418684 ACCATGTTACCTGTCAACCTC 57.581 47.619 0.00 0.00 0.00 3.85
5758 19392 2.708861 ACCATGTTACCTGTCAACCTCA 59.291 45.455 0.00 0.00 0.00 3.86
5759 19393 3.074412 CCATGTTACCTGTCAACCTCAC 58.926 50.000 0.00 0.00 0.00 3.51
5760 19394 3.495983 CCATGTTACCTGTCAACCTCACA 60.496 47.826 0.00 0.00 0.00 3.58
5761 19395 3.916359 TGTTACCTGTCAACCTCACAA 57.084 42.857 0.00 0.00 0.00 3.33
5762 19396 4.431416 TGTTACCTGTCAACCTCACAAT 57.569 40.909 0.00 0.00 0.00 2.71
5763 19397 5.554437 TGTTACCTGTCAACCTCACAATA 57.446 39.130 0.00 0.00 0.00 1.90
5764 19398 5.931294 TGTTACCTGTCAACCTCACAATAA 58.069 37.500 0.00 0.00 0.00 1.40
5765 19399 5.995282 TGTTACCTGTCAACCTCACAATAAG 59.005 40.000 0.00 0.00 0.00 1.73
5766 19400 4.706842 ACCTGTCAACCTCACAATAAGT 57.293 40.909 0.00 0.00 0.00 2.24
5767 19401 5.048846 ACCTGTCAACCTCACAATAAGTT 57.951 39.130 0.00 0.00 0.00 2.66
5768 19402 4.821805 ACCTGTCAACCTCACAATAAGTTG 59.178 41.667 0.00 0.00 40.72 3.16
5770 19404 5.299279 CCTGTCAACCTCACAATAAGTTGTT 59.701 40.000 0.00 0.00 46.07 2.83
5771 19405 6.485313 CCTGTCAACCTCACAATAAGTTGTTA 59.515 38.462 0.00 0.00 46.07 2.41
5772 19406 7.012894 CCTGTCAACCTCACAATAAGTTGTTAA 59.987 37.037 0.00 0.00 46.07 2.01
5773 19407 8.458573 TGTCAACCTCACAATAAGTTGTTAAT 57.541 30.769 0.00 0.00 46.07 1.40
5774 19408 8.908903 TGTCAACCTCACAATAAGTTGTTAATT 58.091 29.630 0.00 0.00 46.07 1.40
5775 19409 9.744468 GTCAACCTCACAATAAGTTGTTAATTT 57.256 29.630 0.00 0.00 46.07 1.82
5779 19413 9.541143 ACCTCACAATAAGTTGTTAATTTTTGG 57.459 29.630 0.00 0.00 46.07 3.28
5780 19414 8.495148 CCTCACAATAAGTTGTTAATTTTTGGC 58.505 33.333 0.00 0.00 46.07 4.52
5781 19415 8.948631 TCACAATAAGTTGTTAATTTTTGGCA 57.051 26.923 0.00 0.00 46.07 4.92
5782 19416 9.383519 TCACAATAAGTTGTTAATTTTTGGCAA 57.616 25.926 0.00 0.00 46.07 4.52
5783 19417 9.432077 CACAATAAGTTGTTAATTTTTGGCAAC 57.568 29.630 0.00 0.00 46.07 4.17
5784 19418 9.389755 ACAATAAGTTGTTAATTTTTGGCAACT 57.610 25.926 0.00 0.00 46.07 3.16
5788 19422 7.071014 AGTTGTTAATTTTTGGCAACTTGTG 57.929 32.000 0.00 0.00 44.79 3.33
5789 19423 6.876257 AGTTGTTAATTTTTGGCAACTTGTGA 59.124 30.769 0.00 0.00 44.79 3.58
5790 19424 7.552330 AGTTGTTAATTTTTGGCAACTTGTGAT 59.448 29.630 0.00 0.00 44.79 3.06
5791 19425 8.821894 GTTGTTAATTTTTGGCAACTTGTGATA 58.178 29.630 0.00 0.00 37.17 2.15
5792 19426 9.553064 TTGTTAATTTTTGGCAACTTGTGATAT 57.447 25.926 0.00 0.00 37.61 1.63
5793 19427 9.553064 TGTTAATTTTTGGCAACTTGTGATATT 57.447 25.926 0.00 0.00 37.61 1.28
5794 19428 9.810231 GTTAATTTTTGGCAACTTGTGATATTG 57.190 29.630 0.00 0.00 37.61 1.90
5795 19429 5.921004 TTTTTGGCAACTTGTGATATTGC 57.079 34.783 0.00 0.00 46.39 3.56
5801 19435 5.002464 GCAACTTGTGATATTGCCATTCT 57.998 39.130 0.00 0.00 42.32 2.40
5802 19436 5.413499 GCAACTTGTGATATTGCCATTCTT 58.587 37.500 0.00 0.00 42.32 2.52
5803 19437 5.870978 GCAACTTGTGATATTGCCATTCTTT 59.129 36.000 0.00 0.00 42.32 2.52
5804 19438 6.369615 GCAACTTGTGATATTGCCATTCTTTT 59.630 34.615 0.00 0.00 42.32 2.27
5805 19439 7.545265 GCAACTTGTGATATTGCCATTCTTTTA 59.455 33.333 0.00 0.00 42.32 1.52
5806 19440 9.590451 CAACTTGTGATATTGCCATTCTTTTAT 57.410 29.630 0.00 0.00 0.00 1.40
5841 19475 2.820330 CCAATTGTTGGTTTGCGAAGT 58.180 42.857 4.43 0.00 45.93 3.01
5842 19476 3.971150 CCAATTGTTGGTTTGCGAAGTA 58.029 40.909 4.43 0.00 45.93 2.24
5843 19477 4.555262 CCAATTGTTGGTTTGCGAAGTAT 58.445 39.130 4.43 0.00 45.93 2.12
5844 19478 4.987912 CCAATTGTTGGTTTGCGAAGTATT 59.012 37.500 4.43 0.00 45.93 1.89
5845 19479 5.107530 CCAATTGTTGGTTTGCGAAGTATTG 60.108 40.000 4.43 0.00 45.93 1.90
5846 19480 3.634568 TGTTGGTTTGCGAAGTATTGG 57.365 42.857 0.00 0.00 0.00 3.16
5871 19505 1.228533 CCAAATGTTGGCAGCAAACC 58.771 50.000 8.44 0.00 45.17 3.27
5872 19506 1.474677 CCAAATGTTGGCAGCAAACCA 60.475 47.619 8.44 0.00 45.17 3.67
5873 19507 2.286872 CAAATGTTGGCAGCAAACCAA 58.713 42.857 8.44 1.35 44.86 3.67
5879 19513 3.608316 TTGGCAGCAAACCAATTATCC 57.392 42.857 0.00 0.00 42.23 2.59
5880 19514 2.818921 TGGCAGCAAACCAATTATCCT 58.181 42.857 0.00 0.00 33.12 3.24
5881 19515 2.760092 TGGCAGCAAACCAATTATCCTC 59.240 45.455 0.00 0.00 33.12 3.71
5882 19516 3.026694 GGCAGCAAACCAATTATCCTCT 58.973 45.455 0.00 0.00 0.00 3.69
5883 19517 4.207165 GGCAGCAAACCAATTATCCTCTA 58.793 43.478 0.00 0.00 0.00 2.43
5893 19527 9.927081 AAACCAATTATCCTCTAAATCTCACAT 57.073 29.630 0.00 0.00 0.00 3.21
5906 19559 8.730680 TCTAAATCTCACATGCCTAAAAAGTTC 58.269 33.333 0.00 0.00 0.00 3.01
5916 19569 4.877251 TGCCTAAAAAGTTCGTACACAGTT 59.123 37.500 0.00 0.00 0.00 3.16
5937 19590 6.595326 CAGTTATAGTGATCAAAGCTCCACAA 59.405 38.462 0.00 0.00 32.35 3.33
5980 19635 2.159382 GTGATGGTTCGAATTGTGGGT 58.841 47.619 0.00 0.00 0.00 4.51
6102 19868 2.878580 TGCTTGTGCAGTTTGACTTTG 58.121 42.857 0.00 0.00 45.31 2.77
6135 19907 1.728971 GATCACGAGTCCACTTTGCTG 59.271 52.381 0.00 0.00 0.00 4.41
6144 19916 2.294233 GTCCACTTTGCTGCATGAGAAA 59.706 45.455 17.12 2.59 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 2.411290 GTGTGGTGTTGGCCGTTG 59.589 61.111 0.00 0.00 0.00 4.10
92 93 3.206246 CGTGTGGTGTTGGCCGTT 61.206 61.111 0.00 0.00 0.00 4.44
96 97 3.114647 TTTCGCGTGTGGTGTTGGC 62.115 57.895 5.77 0.00 0.00 4.52
146 150 6.473455 AGTTTGCTCAAAAGAAAAATGACTCG 59.527 34.615 0.00 0.00 31.59 4.18
147 151 7.043125 GGAGTTTGCTCAAAAGAAAAATGACTC 60.043 37.037 0.00 0.00 43.37 3.36
149 153 6.018751 GGGAGTTTGCTCAAAAGAAAAATGAC 60.019 38.462 0.00 0.00 43.37 3.06
150 154 6.048509 GGGAGTTTGCTCAAAAGAAAAATGA 58.951 36.000 0.00 0.00 43.37 2.57
153 157 5.422012 AGAGGGAGTTTGCTCAAAAGAAAAA 59.578 36.000 0.00 0.00 43.37 1.94
154 158 4.956075 AGAGGGAGTTTGCTCAAAAGAAAA 59.044 37.500 0.00 0.00 43.37 2.29
155 159 4.339247 CAGAGGGAGTTTGCTCAAAAGAAA 59.661 41.667 0.00 0.00 43.37 2.52
156 160 3.885297 CAGAGGGAGTTTGCTCAAAAGAA 59.115 43.478 0.00 0.00 43.37 2.52
157 161 3.136443 TCAGAGGGAGTTTGCTCAAAAGA 59.864 43.478 0.00 0.00 43.37 2.52
158 162 3.480470 TCAGAGGGAGTTTGCTCAAAAG 58.520 45.455 0.00 0.00 43.37 2.27
159 163 3.480470 CTCAGAGGGAGTTTGCTCAAAA 58.520 45.455 0.00 0.00 43.37 2.44
161 165 2.847327 CTCAGAGGGAGTTTGCTCAA 57.153 50.000 0.00 0.00 43.37 3.02
171 175 1.690633 GGCCCATGACTCAGAGGGA 60.691 63.158 19.13 0.00 44.30 4.20
172 176 2.750657 GGGCCCATGACTCAGAGGG 61.751 68.421 19.95 12.96 44.37 4.30
187 191 1.818785 GATCTGCTGACTGCTGGGC 60.819 63.158 10.54 0.00 43.37 5.36
234 238 1.104577 GGGAGTGTGAAAACGGCCAA 61.105 55.000 2.24 0.00 0.00 4.52
235 239 1.527380 GGGAGTGTGAAAACGGCCA 60.527 57.895 2.24 0.00 0.00 5.36
302 306 2.032550 CGTCGAAAGGAGCGGAATAGTA 59.967 50.000 0.00 0.00 0.00 1.82
305 309 0.101759 CCGTCGAAAGGAGCGGAATA 59.898 55.000 3.98 0.00 39.89 1.75
463 517 2.682856 ACTGTCGTGTGTGAAGCATTTT 59.317 40.909 0.00 0.00 0.00 1.82
464 518 2.032054 CACTGTCGTGTGTGAAGCATTT 59.968 45.455 0.00 0.00 36.38 2.32
465 519 1.599071 CACTGTCGTGTGTGAAGCATT 59.401 47.619 0.00 0.00 36.38 3.56
466 520 1.220529 CACTGTCGTGTGTGAAGCAT 58.779 50.000 0.00 0.00 36.38 3.79
467 521 2.676744 CACTGTCGTGTGTGAAGCA 58.323 52.632 0.00 0.00 36.38 3.91
476 530 1.497991 ATCGTCCAAACACTGTCGTG 58.502 50.000 0.00 0.00 46.63 4.35
478 532 3.121279 CAGTTATCGTCCAAACACTGTCG 59.879 47.826 0.00 0.00 0.00 4.35
479 533 3.120649 GCAGTTATCGTCCAAACACTGTC 60.121 47.826 0.00 0.00 35.17 3.51
480 534 2.806244 GCAGTTATCGTCCAAACACTGT 59.194 45.455 0.00 0.00 35.17 3.55
481 535 2.805671 TGCAGTTATCGTCCAAACACTG 59.194 45.455 0.00 0.00 35.71 3.66
482 536 2.806244 GTGCAGTTATCGTCCAAACACT 59.194 45.455 0.00 0.00 0.00 3.55
483 537 2.411031 CGTGCAGTTATCGTCCAAACAC 60.411 50.000 0.00 0.00 0.00 3.32
484 538 1.795872 CGTGCAGTTATCGTCCAAACA 59.204 47.619 0.00 0.00 0.00 2.83
485 539 2.063266 TCGTGCAGTTATCGTCCAAAC 58.937 47.619 0.00 0.00 0.00 2.93
486 540 2.442212 TCGTGCAGTTATCGTCCAAA 57.558 45.000 0.00 0.00 0.00 3.28
490 544 2.037649 CTCGATCGTGCAGTTATCGTC 58.962 52.381 15.94 5.94 42.32 4.20
491 545 1.268589 CCTCGATCGTGCAGTTATCGT 60.269 52.381 15.94 0.00 42.32 3.73
492 546 1.399572 CCTCGATCGTGCAGTTATCG 58.600 55.000 15.94 15.56 42.90 2.92
493 547 1.337071 TCCCTCGATCGTGCAGTTATC 59.663 52.381 15.94 0.00 0.00 1.75
494 548 1.399714 TCCCTCGATCGTGCAGTTAT 58.600 50.000 15.94 0.00 0.00 1.89
495 549 1.337071 GATCCCTCGATCGTGCAGTTA 59.663 52.381 15.94 0.00 35.83 2.24
497 551 1.736586 GATCCCTCGATCGTGCAGT 59.263 57.895 15.94 0.00 35.83 4.40
498 552 1.006805 GGATCCCTCGATCGTGCAG 60.007 63.158 15.94 5.10 45.16 4.41
499 553 1.738346 CTGGATCCCTCGATCGTGCA 61.738 60.000 15.94 5.85 45.16 4.57
500 554 1.006805 CTGGATCCCTCGATCGTGC 60.007 63.158 15.94 0.70 45.16 5.34
501 555 1.006805 GCTGGATCCCTCGATCGTG 60.007 63.158 15.94 12.87 45.16 4.35
502 556 2.556459 CGCTGGATCCCTCGATCGT 61.556 63.158 15.94 0.00 45.16 3.73
503 557 2.256764 CGCTGGATCCCTCGATCG 59.743 66.667 9.36 9.36 45.16 3.69
504 558 2.653702 CCGCTGGATCCCTCGATC 59.346 66.667 20.26 0.00 43.73 3.69
525 579 4.383861 TCGAGCACAGCCCAGCAG 62.384 66.667 0.00 0.00 0.00 4.24
526 580 4.687215 GTCGAGCACAGCCCAGCA 62.687 66.667 0.00 0.00 0.00 4.41
527 581 3.965539 ATGTCGAGCACAGCCCAGC 62.966 63.158 0.00 0.00 38.85 4.85
530 584 0.674895 AAGAATGTCGAGCACAGCCC 60.675 55.000 0.00 0.00 38.85 5.19
531 585 0.723981 GAAGAATGTCGAGCACAGCC 59.276 55.000 0.00 0.00 38.85 4.85
532 586 0.368227 CGAAGAATGTCGAGCACAGC 59.632 55.000 0.00 0.00 43.86 4.40
533 587 0.994995 CCGAAGAATGTCGAGCACAG 59.005 55.000 0.00 0.00 43.86 3.66
534 588 1.014044 GCCGAAGAATGTCGAGCACA 61.014 55.000 0.00 0.00 43.86 4.57
535 589 0.737715 AGCCGAAGAATGTCGAGCAC 60.738 55.000 9.54 0.00 43.86 4.40
536 590 0.737367 CAGCCGAAGAATGTCGAGCA 60.737 55.000 9.54 0.00 43.86 4.26
537 591 1.424493 CCAGCCGAAGAATGTCGAGC 61.424 60.000 0.00 0.00 43.86 5.03
538 592 0.173481 TCCAGCCGAAGAATGTCGAG 59.827 55.000 0.00 0.00 43.86 4.04
539 593 0.824109 ATCCAGCCGAAGAATGTCGA 59.176 50.000 0.00 0.00 43.86 4.20
540 594 1.656652 AATCCAGCCGAAGAATGTCG 58.343 50.000 0.00 0.00 40.77 4.35
541 595 4.201920 GGTTAAATCCAGCCGAAGAATGTC 60.202 45.833 0.00 0.00 0.00 3.06
542 596 3.694566 GGTTAAATCCAGCCGAAGAATGT 59.305 43.478 0.00 0.00 0.00 2.71
543 597 3.242739 CGGTTAAATCCAGCCGAAGAATG 60.243 47.826 0.00 0.00 44.21 2.67
546 600 1.276989 ACGGTTAAATCCAGCCGAAGA 59.723 47.619 8.87 0.00 44.21 2.87
547 601 1.664151 GACGGTTAAATCCAGCCGAAG 59.336 52.381 8.87 0.00 44.21 3.79
549 603 0.458889 CGACGGTTAAATCCAGCCGA 60.459 55.000 8.87 0.00 44.21 5.54
550 604 0.738412 ACGACGGTTAAATCCAGCCG 60.738 55.000 0.00 0.00 46.53 5.52
551 605 0.725117 CACGACGGTTAAATCCAGCC 59.275 55.000 0.00 0.00 0.00 4.85
552 606 0.096454 GCACGACGGTTAAATCCAGC 59.904 55.000 0.00 0.00 0.00 4.85
553 607 1.127951 GTGCACGACGGTTAAATCCAG 59.872 52.381 0.00 0.00 0.00 3.86
554 608 1.149987 GTGCACGACGGTTAAATCCA 58.850 50.000 0.00 0.00 0.00 3.41
555 609 1.149987 TGTGCACGACGGTTAAATCC 58.850 50.000 13.13 0.00 0.00 3.01
556 610 2.222445 ACTTGTGCACGACGGTTAAATC 59.778 45.455 13.13 0.00 0.00 2.17
557 611 2.215196 ACTTGTGCACGACGGTTAAAT 58.785 42.857 13.13 0.00 0.00 1.40
558 612 1.593933 GACTTGTGCACGACGGTTAAA 59.406 47.619 13.13 0.00 0.00 1.52
560 614 0.935831 CGACTTGTGCACGACGGTTA 60.936 55.000 13.13 0.00 0.00 2.85
562 616 2.657296 CGACTTGTGCACGACGGT 60.657 61.111 13.13 5.45 0.00 4.83
564 618 2.645510 GGACGACTTGTGCACGACG 61.646 63.158 13.13 13.55 39.04 5.12
565 619 1.590525 TGGACGACTTGTGCACGAC 60.591 57.895 13.13 0.00 44.74 4.34
570 624 2.844122 AAAGTTTGGACGACTTGTGC 57.156 45.000 0.00 0.00 37.41 4.57
571 625 4.210537 ACGATAAAGTTTGGACGACTTGTG 59.789 41.667 14.33 0.00 37.41 3.33
572 626 4.374399 ACGATAAAGTTTGGACGACTTGT 58.626 39.130 14.33 0.00 37.41 3.16
573 627 4.143179 GGACGATAAAGTTTGGACGACTTG 60.143 45.833 14.33 0.00 37.41 3.16
574 628 3.992427 GGACGATAAAGTTTGGACGACTT 59.008 43.478 14.33 0.00 38.92 3.01
575 629 3.582780 GGACGATAAAGTTTGGACGACT 58.417 45.455 14.33 0.00 0.00 4.18
576 630 2.669924 GGGACGATAAAGTTTGGACGAC 59.330 50.000 14.33 9.77 0.00 4.34
579 633 3.062122 TGGGGACGATAAAGTTTGGAC 57.938 47.619 0.00 0.00 0.00 4.02
581 635 3.564225 GCTATGGGGACGATAAAGTTTGG 59.436 47.826 0.00 0.00 0.00 3.28
582 636 4.035208 GTGCTATGGGGACGATAAAGTTTG 59.965 45.833 0.00 0.00 0.00 2.93
583 637 4.080526 AGTGCTATGGGGACGATAAAGTTT 60.081 41.667 0.00 0.00 41.32 2.66
586 640 3.393800 CAGTGCTATGGGGACGATAAAG 58.606 50.000 0.00 0.00 41.32 1.85
587 641 2.484770 GCAGTGCTATGGGGACGATAAA 60.485 50.000 8.18 0.00 41.32 1.40
588 642 1.070134 GCAGTGCTATGGGGACGATAA 59.930 52.381 8.18 0.00 41.32 1.75
589 643 0.679505 GCAGTGCTATGGGGACGATA 59.320 55.000 8.18 0.00 41.32 2.92
590 644 1.050988 AGCAGTGCTATGGGGACGAT 61.051 55.000 18.11 0.00 41.32 3.73
592 646 1.227380 GAGCAGTGCTATGGGGACG 60.227 63.158 19.77 0.00 39.88 4.79
593 647 1.147153 GGAGCAGTGCTATGGGGAC 59.853 63.158 19.77 3.10 39.88 4.46
594 648 1.003442 AGGAGCAGTGCTATGGGGA 59.997 57.895 19.77 0.00 39.88 4.81
595 649 1.053264 AGAGGAGCAGTGCTATGGGG 61.053 60.000 19.77 0.00 39.88 4.96
596 650 0.106335 CAGAGGAGCAGTGCTATGGG 59.894 60.000 19.77 3.18 39.88 4.00
597 651 0.829333 ACAGAGGAGCAGTGCTATGG 59.171 55.000 19.77 8.79 39.88 2.74
598 652 4.321601 GGTATACAGAGGAGCAGTGCTATG 60.322 50.000 19.77 16.31 39.88 2.23
599 653 3.829601 GGTATACAGAGGAGCAGTGCTAT 59.170 47.826 19.77 10.11 39.88 2.97
601 655 2.035632 GGTATACAGAGGAGCAGTGCT 58.964 52.381 19.86 19.86 43.88 4.40
602 656 1.757118 TGGTATACAGAGGAGCAGTGC 59.243 52.381 7.13 7.13 0.00 4.40
603 657 3.386078 ACATGGTATACAGAGGAGCAGTG 59.614 47.826 5.01 0.00 0.00 3.66
604 658 3.639094 GACATGGTATACAGAGGAGCAGT 59.361 47.826 5.01 0.00 0.00 4.40
605 659 3.638627 TGACATGGTATACAGAGGAGCAG 59.361 47.826 5.01 0.00 0.00 4.24
606 660 3.642141 TGACATGGTATACAGAGGAGCA 58.358 45.455 5.01 0.00 0.00 4.26
607 661 4.672587 TTGACATGGTATACAGAGGAGC 57.327 45.455 5.01 0.00 0.00 4.70
662 716 1.071071 TGGATTCTTCGTTTCACCCGT 59.929 47.619 0.00 0.00 0.00 5.28
672 726 1.067142 TGTCCCGAGTTGGATTCTTCG 60.067 52.381 0.00 0.00 42.00 3.79
709 765 4.235762 CCGTGGCACCCTATCCCG 62.236 72.222 12.86 0.00 0.00 5.14
748 819 1.422781 CATGACATGTGGGGCCTAGAT 59.577 52.381 1.15 0.00 0.00 1.98
1209 4559 4.148825 AAGTAGCCGAGCAGCCCG 62.149 66.667 0.00 0.00 0.00 6.13
1451 11654 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
1452 11655 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
1453 11656 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1454 11657 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
1455 11658 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1456 11659 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
1464 11667 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1465 11668 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1466 11669 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1467 11670 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
1468 11671 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1469 11672 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1470 11673 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1471 11674 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1472 11675 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1473 11676 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1474 11677 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1475 11678 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1476 11679 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1477 11680 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1478 11681 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1479 11682 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1480 11683 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1481 11684 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1482 11685 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1483 11686 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
1484 11687 1.203212 TCTACTCCCTCCGTCCCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
1485 11688 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
1486 11689 0.635009 ATCTACTCCCTCCGTCCCAA 59.365 55.000 0.00 0.00 0.00 4.12
1487 11690 0.635009 AATCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
1488 11691 1.041437 CAATCTACTCCCTCCGTCCC 58.959 60.000 0.00 0.00 0.00 4.46
1489 11692 0.389757 GCAATCTACTCCCTCCGTCC 59.610 60.000 0.00 0.00 0.00 4.79
1490 11693 1.404843 AGCAATCTACTCCCTCCGTC 58.595 55.000 0.00 0.00 0.00 4.79
1491 11694 1.867363 AAGCAATCTACTCCCTCCGT 58.133 50.000 0.00 0.00 0.00 4.69
1492 11695 2.555199 CAAAGCAATCTACTCCCTCCG 58.445 52.381 0.00 0.00 0.00 4.63
1493 11696 2.092699 AGCAAAGCAATCTACTCCCTCC 60.093 50.000 0.00 0.00 0.00 4.30
1494 11697 3.274095 AGCAAAGCAATCTACTCCCTC 57.726 47.619 0.00 0.00 0.00 4.30
1495 11698 3.009473 TCAAGCAAAGCAATCTACTCCCT 59.991 43.478 0.00 0.00 0.00 4.20
1496 11699 3.127721 GTCAAGCAAAGCAATCTACTCCC 59.872 47.826 0.00 0.00 0.00 4.30
1497 11700 4.006319 AGTCAAGCAAAGCAATCTACTCC 58.994 43.478 0.00 0.00 0.00 3.85
1498 11701 5.049129 ACAAGTCAAGCAAAGCAATCTACTC 60.049 40.000 0.00 0.00 0.00 2.59
1499 11702 4.823989 ACAAGTCAAGCAAAGCAATCTACT 59.176 37.500 0.00 0.00 0.00 2.57
1500 11703 5.113502 ACAAGTCAAGCAAAGCAATCTAC 57.886 39.130 0.00 0.00 0.00 2.59
1501 11704 5.772825 AACAAGTCAAGCAAAGCAATCTA 57.227 34.783 0.00 0.00 0.00 1.98
1502 11705 4.660789 AACAAGTCAAGCAAAGCAATCT 57.339 36.364 0.00 0.00 0.00 2.40
1503 11706 4.919754 CCTAACAAGTCAAGCAAAGCAATC 59.080 41.667 0.00 0.00 0.00 2.67
1504 11707 4.342092 ACCTAACAAGTCAAGCAAAGCAAT 59.658 37.500 0.00 0.00 0.00 3.56
1505 11708 3.699038 ACCTAACAAGTCAAGCAAAGCAA 59.301 39.130 0.00 0.00 0.00 3.91
1506 11709 3.066621 CACCTAACAAGTCAAGCAAAGCA 59.933 43.478 0.00 0.00 0.00 3.91
1507 11710 3.550842 CCACCTAACAAGTCAAGCAAAGC 60.551 47.826 0.00 0.00 0.00 3.51
1508 11711 3.004734 CCCACCTAACAAGTCAAGCAAAG 59.995 47.826 0.00 0.00 0.00 2.77
1509 11712 2.955660 CCCACCTAACAAGTCAAGCAAA 59.044 45.455 0.00 0.00 0.00 3.68
1625 11828 7.406553 CGTACTTCTGAAACAACAAATGAGAA 58.593 34.615 0.00 0.00 0.00 2.87
1636 11839 4.091549 AGATACCCCGTACTTCTGAAACA 58.908 43.478 0.00 0.00 0.00 2.83
1637 11840 4.732672 AGATACCCCGTACTTCTGAAAC 57.267 45.455 0.00 0.00 0.00 2.78
1638 11841 7.427989 AAATAGATACCCCGTACTTCTGAAA 57.572 36.000 0.00 0.00 0.00 2.69
1642 11845 6.460676 CGTCAAAATAGATACCCCGTACTTCT 60.461 42.308 0.00 0.00 0.00 2.85
1645 11848 4.500375 GCGTCAAAATAGATACCCCGTACT 60.500 45.833 0.00 0.00 0.00 2.73
1646 11849 3.737774 GCGTCAAAATAGATACCCCGTAC 59.262 47.826 0.00 0.00 0.00 3.67
1649 11852 2.800544 CTGCGTCAAAATAGATACCCCG 59.199 50.000 0.00 0.00 0.00 5.73
1653 11889 5.904080 GCATTCACTGCGTCAAAATAGATAC 59.096 40.000 0.00 0.00 41.97 2.24
1724 11960 1.153349 GGCAATCCTCCGACTCCAC 60.153 63.158 0.00 0.00 0.00 4.02
1759 11995 3.152261 AGTATGAGCTCGACGAAAAGG 57.848 47.619 9.64 0.00 0.00 3.11
1763 11999 2.031069 GGCATAGTATGAGCTCGACGAA 60.031 50.000 14.52 4.44 0.00 3.85
1788 12024 8.385491 ACATTCCCTGCATCAAGATACATAATA 58.615 33.333 0.00 0.00 0.00 0.98
1837 12076 2.499289 TCACAATGCAACACCAAAACCT 59.501 40.909 0.00 0.00 0.00 3.50
1850 12095 1.379044 CCCCTCCCACTCACAATGC 60.379 63.158 0.00 0.00 0.00 3.56
1852 12097 0.405585 CAACCCCTCCCACTCACAAT 59.594 55.000 0.00 0.00 0.00 2.71
1856 12101 0.253160 ATAGCAACCCCTCCCACTCA 60.253 55.000 0.00 0.00 0.00 3.41
2341 13061 6.870971 ATTTTTCCACTAAAGTAACGAGCA 57.129 33.333 0.00 0.00 0.00 4.26
2354 13074 7.895759 TCTGCAAGCTAATTTATTTTTCCACT 58.104 30.769 0.00 0.00 0.00 4.00
2431 13151 2.123589 TGTGTCACAGGGAAGAAAGGA 58.876 47.619 0.18 0.00 0.00 3.36
2473 13193 5.389516 GCGGACTACATTTCAGTTAACAGTG 60.390 44.000 8.61 0.00 0.00 3.66
2667 13505 6.899393 AAGAAGTTGCATTGATGGTTAGAA 57.101 33.333 0.00 0.00 0.00 2.10
2733 13613 9.547753 AGATTACTGTGGCAAATAGTACTTATG 57.452 33.333 0.00 0.00 0.00 1.90
2967 16089 4.551388 CTGTACAGACAAGAGGAACTGTC 58.449 47.826 18.45 0.00 42.39 3.51
3082 16235 7.384932 GCTAACTTGTTTTCTGCAACCATAAAT 59.615 33.333 0.00 0.00 0.00 1.40
3277 16434 9.811995 AATATGCATTTTCACTTACGACTAGTA 57.188 29.630 3.54 0.00 0.00 1.82
3367 16541 8.998277 ATAACTAAGTTATAGCAGTGAGAGGA 57.002 34.615 0.00 0.00 37.02 3.71
3372 16546 9.750125 CACATGATAACTAAGTTATAGCAGTGA 57.250 33.333 0.00 0.00 38.62 3.41
3434 16609 8.741603 TGGAATAGGTAAACTTTTAGTATGGC 57.258 34.615 0.00 0.00 0.00 4.40
4034 17640 5.788450 AGAGTTGATGAGTAAAGAGTGGTG 58.212 41.667 0.00 0.00 0.00 4.17
4059 17665 2.873170 TCGCGAAACATAAGCTTGTG 57.127 45.000 20.36 20.36 0.00 3.33
4077 17683 6.659242 TGGGATGGAGAGACAATTTAGTTTTC 59.341 38.462 0.00 0.00 0.00 2.29
4725 18338 3.323775 ACCTTGGTGAAGAGAGGGTAAA 58.676 45.455 0.00 0.00 33.51 2.01
4821 18434 3.680156 GCCAACATCAAAGGCCGA 58.320 55.556 0.00 0.00 42.58 5.54
4833 18446 1.117150 ATGCCATCAGGATTGCCAAC 58.883 50.000 3.26 0.00 36.89 3.77
4901 18514 1.677637 GGGCCGAGAATCCTTCGACT 61.678 60.000 0.00 0.00 34.02 4.18
5030 18643 1.686800 GGGAACAGCCATGGCCATT 60.687 57.895 33.14 26.13 43.17 3.16
5317 18931 5.417894 TGTACACGATGTGGTTCTCTTCTAT 59.582 40.000 0.00 0.00 37.94 1.98
5368 18984 3.698029 CTGCTATTTTTGCCGCAGTAT 57.302 42.857 0.00 0.00 43.53 2.12
5471 19087 3.381272 ACACTAGCTCAAGCAAGCAAAAA 59.619 39.130 4.59 0.00 45.00 1.94
5511 19144 2.807837 GCCCAAGCATATGCAAATTCCC 60.808 50.000 28.62 7.61 45.16 3.97
5512 19145 2.486918 GCCCAAGCATATGCAAATTCC 58.513 47.619 28.62 9.14 45.16 3.01
5514 19147 1.807377 GCGCCCAAGCATATGCAAATT 60.807 47.619 28.62 12.34 45.16 1.82
5515 19148 0.249573 GCGCCCAAGCATATGCAAAT 60.250 50.000 28.62 12.20 45.16 2.32
5516 19149 1.141449 GCGCCCAAGCATATGCAAA 59.859 52.632 28.62 0.00 45.16 3.68
5631 19265 6.894103 AGGATAATCAAGCAAGTTCTGGAATT 59.106 34.615 0.00 0.00 0.00 2.17
5664 19298 6.839124 TTAACATCAAACCAATCATGCTCT 57.161 33.333 0.00 0.00 0.00 4.09
5665 19299 7.887996 TTTTAACATCAAACCAATCATGCTC 57.112 32.000 0.00 0.00 0.00 4.26
5666 19300 8.851541 ATTTTTAACATCAAACCAATCATGCT 57.148 26.923 0.00 0.00 0.00 3.79
5667 19301 9.332301 CAATTTTTAACATCAAACCAATCATGC 57.668 29.630 0.00 0.00 0.00 4.06
5668 19302 9.828852 CCAATTTTTAACATCAAACCAATCATG 57.171 29.630 0.00 0.00 0.00 3.07
5669 19303 8.513774 GCCAATTTTTAACATCAAACCAATCAT 58.486 29.630 0.00 0.00 0.00 2.45
5670 19304 7.500227 TGCCAATTTTTAACATCAAACCAATCA 59.500 29.630 0.00 0.00 0.00 2.57
5671 19305 7.869800 TGCCAATTTTTAACATCAAACCAATC 58.130 30.769 0.00 0.00 0.00 2.67
5672 19306 7.814264 TGCCAATTTTTAACATCAAACCAAT 57.186 28.000 0.00 0.00 0.00 3.16
5673 19307 7.646314 CATGCCAATTTTTAACATCAAACCAA 58.354 30.769 0.00 0.00 0.00 3.67
5674 19308 6.293845 GCATGCCAATTTTTAACATCAAACCA 60.294 34.615 6.36 0.00 0.00 3.67
5675 19309 6.085573 GCATGCCAATTTTTAACATCAAACC 58.914 36.000 6.36 0.00 0.00 3.27
5676 19310 6.085573 GGCATGCCAATTTTTAACATCAAAC 58.914 36.000 32.08 0.00 35.81 2.93
5677 19311 5.766670 TGGCATGCCAATTTTTAACATCAAA 59.233 32.000 36.95 7.19 44.12 2.69
5678 19312 5.311265 TGGCATGCCAATTTTTAACATCAA 58.689 33.333 36.95 7.62 44.12 2.57
5679 19313 4.903054 TGGCATGCCAATTTTTAACATCA 58.097 34.783 36.95 8.36 44.12 3.07
5692 19326 2.367894 TCTGTCAAATTTTGGCATGCCA 59.632 40.909 35.59 35.59 45.37 4.92
5693 19327 3.042871 TCTGTCAAATTTTGGCATGCC 57.957 42.857 30.54 30.54 45.37 4.40
5694 19328 3.181514 GCATCTGTCAAATTTTGGCATGC 60.182 43.478 20.32 20.32 45.37 4.06
5695 19329 3.372822 GGCATCTGTCAAATTTTGGCATG 59.627 43.478 16.20 13.44 45.37 4.06
5696 19330 3.602483 GGCATCTGTCAAATTTTGGCAT 58.398 40.909 16.20 0.63 45.37 4.40
5697 19331 2.609984 CGGCATCTGTCAAATTTTGGCA 60.610 45.455 15.16 15.16 44.14 4.92
5698 19332 1.994779 CGGCATCTGTCAAATTTTGGC 59.005 47.619 6.79 6.79 35.37 4.52
5699 19333 2.029110 ACCGGCATCTGTCAAATTTTGG 60.029 45.455 0.00 0.00 0.00 3.28
5700 19334 3.302365 ACCGGCATCTGTCAAATTTTG 57.698 42.857 0.00 2.59 0.00 2.44
5701 19335 4.522789 ACTAACCGGCATCTGTCAAATTTT 59.477 37.500 0.00 0.00 0.00 1.82
5702 19336 4.079253 ACTAACCGGCATCTGTCAAATTT 58.921 39.130 0.00 0.00 0.00 1.82
5703 19337 3.440173 CACTAACCGGCATCTGTCAAATT 59.560 43.478 0.00 0.00 0.00 1.82
5704 19338 3.009723 CACTAACCGGCATCTGTCAAAT 58.990 45.455 0.00 0.00 0.00 2.32
5705 19339 2.422597 CACTAACCGGCATCTGTCAAA 58.577 47.619 0.00 0.00 0.00 2.69
5706 19340 1.943968 GCACTAACCGGCATCTGTCAA 60.944 52.381 0.00 0.00 0.00 3.18
5707 19341 0.391130 GCACTAACCGGCATCTGTCA 60.391 55.000 0.00 0.00 0.00 3.58
5708 19342 0.108138 AGCACTAACCGGCATCTGTC 60.108 55.000 0.00 0.00 0.00 3.51
5709 19343 0.324943 AAGCACTAACCGGCATCTGT 59.675 50.000 0.00 0.00 0.00 3.41
5710 19344 0.729116 CAAGCACTAACCGGCATCTG 59.271 55.000 0.00 0.00 0.00 2.90
5711 19345 0.392998 CCAAGCACTAACCGGCATCT 60.393 55.000 0.00 0.00 0.00 2.90
5712 19346 0.676782 ACCAAGCACTAACCGGCATC 60.677 55.000 0.00 0.00 0.00 3.91
5713 19347 0.251165 AACCAAGCACTAACCGGCAT 60.251 50.000 0.00 0.00 0.00 4.40
5714 19348 1.149627 AACCAAGCACTAACCGGCA 59.850 52.632 0.00 0.00 0.00 5.69
5715 19349 1.579429 CAACCAAGCACTAACCGGC 59.421 57.895 0.00 0.00 0.00 6.13
5716 19350 0.536460 ACCAACCAAGCACTAACCGG 60.536 55.000 0.00 0.00 0.00 5.28
5717 19351 1.314730 AACCAACCAAGCACTAACCG 58.685 50.000 0.00 0.00 0.00 4.44
5718 19352 3.909776 GTAACCAACCAAGCACTAACC 57.090 47.619 0.00 0.00 0.00 2.85
5729 19363 3.754850 GACAGGTAACATGGTAACCAACC 59.245 47.826 1.05 0.00 45.18 3.77
5730 19364 4.391155 TGACAGGTAACATGGTAACCAAC 58.609 43.478 1.05 0.00 36.95 3.77
5731 19365 4.708576 TGACAGGTAACATGGTAACCAA 57.291 40.909 1.05 0.00 36.95 3.67
5732 19366 4.391155 GTTGACAGGTAACATGGTAACCA 58.609 43.478 1.05 0.00 38.19 3.67
5733 19367 3.754850 GGTTGACAGGTAACATGGTAACC 59.245 47.826 1.05 3.71 41.41 2.85
5734 19368 4.648651 AGGTTGACAGGTAACATGGTAAC 58.351 43.478 0.00 0.00 41.41 2.50
5735 19369 4.348461 TGAGGTTGACAGGTAACATGGTAA 59.652 41.667 0.00 0.00 41.41 2.85
5736 19370 3.904965 TGAGGTTGACAGGTAACATGGTA 59.095 43.478 0.00 0.00 41.41 3.25
5737 19371 2.708861 TGAGGTTGACAGGTAACATGGT 59.291 45.455 0.00 0.00 41.41 3.55
5738 19372 3.074412 GTGAGGTTGACAGGTAACATGG 58.926 50.000 0.00 0.00 41.41 3.66
5739 19373 3.738982 TGTGAGGTTGACAGGTAACATG 58.261 45.455 0.00 0.00 41.41 3.21
5740 19374 4.431416 TTGTGAGGTTGACAGGTAACAT 57.569 40.909 0.00 0.00 41.41 2.71
5741 19375 3.916359 TTGTGAGGTTGACAGGTAACA 57.084 42.857 0.00 0.00 41.41 2.41
5742 19376 5.995897 ACTTATTGTGAGGTTGACAGGTAAC 59.004 40.000 0.00 0.00 0.00 2.50
5743 19377 6.182507 ACTTATTGTGAGGTTGACAGGTAA 57.817 37.500 0.00 0.00 0.00 2.85
5744 19378 5.818678 ACTTATTGTGAGGTTGACAGGTA 57.181 39.130 0.00 0.00 0.00 3.08
5745 19379 4.706842 ACTTATTGTGAGGTTGACAGGT 57.293 40.909 0.00 0.00 0.00 4.00
5746 19380 5.362556 CAACTTATTGTGAGGTTGACAGG 57.637 43.478 0.00 0.00 40.74 4.00
5765 19399 7.066374 TCACAAGTTGCCAAAAATTAACAAC 57.934 32.000 1.81 0.00 40.65 3.32
5766 19400 7.856145 ATCACAAGTTGCCAAAAATTAACAA 57.144 28.000 1.81 0.00 0.00 2.83
5767 19401 9.553064 AATATCACAAGTTGCCAAAAATTAACA 57.447 25.926 1.81 0.00 0.00 2.41
5768 19402 9.810231 CAATATCACAAGTTGCCAAAAATTAAC 57.190 29.630 1.81 0.00 0.00 2.01
5769 19403 8.502387 GCAATATCACAAGTTGCCAAAAATTAA 58.498 29.630 1.81 0.00 41.67 1.40
5770 19404 8.027440 GCAATATCACAAGTTGCCAAAAATTA 57.973 30.769 1.81 0.00 41.67 1.40
5771 19405 6.901265 GCAATATCACAAGTTGCCAAAAATT 58.099 32.000 1.81 0.00 41.67 1.82
5772 19406 6.484818 GCAATATCACAAGTTGCCAAAAAT 57.515 33.333 1.81 0.00 41.67 1.82
5773 19407 5.921004 GCAATATCACAAGTTGCCAAAAA 57.079 34.783 1.81 0.00 41.67 1.94
5779 19413 5.002464 AGAATGGCAATATCACAAGTTGC 57.998 39.130 1.81 0.97 45.54 4.17
5780 19414 7.894376 AAAAGAATGGCAATATCACAAGTTG 57.106 32.000 0.00 0.00 0.00 3.16
5822 19456 5.107530 CCAATACTTCGCAAACCAACAATTG 60.108 40.000 3.24 3.24 0.00 2.32
5823 19457 4.987912 CCAATACTTCGCAAACCAACAATT 59.012 37.500 0.00 0.00 0.00 2.32
5824 19458 4.555262 CCAATACTTCGCAAACCAACAAT 58.445 39.130 0.00 0.00 0.00 2.71
5825 19459 3.797184 GCCAATACTTCGCAAACCAACAA 60.797 43.478 0.00 0.00 0.00 2.83
5826 19460 2.287909 GCCAATACTTCGCAAACCAACA 60.288 45.455 0.00 0.00 0.00 3.33
5827 19461 2.287909 TGCCAATACTTCGCAAACCAAC 60.288 45.455 0.00 0.00 0.00 3.77
5828 19462 1.957177 TGCCAATACTTCGCAAACCAA 59.043 42.857 0.00 0.00 0.00 3.67
5829 19463 1.610363 TGCCAATACTTCGCAAACCA 58.390 45.000 0.00 0.00 0.00 3.67
5830 19464 2.715737 TTGCCAATACTTCGCAAACC 57.284 45.000 0.00 0.00 39.43 3.27
5831 19465 2.345341 GCATTGCCAATACTTCGCAAAC 59.655 45.455 0.00 0.00 44.94 2.93
5832 19466 2.605030 GCATTGCCAATACTTCGCAAA 58.395 42.857 0.00 0.00 44.94 3.68
5833 19467 2.276472 GCATTGCCAATACTTCGCAA 57.724 45.000 0.00 0.00 45.77 4.85
5853 19487 1.950828 TGGTTTGCTGCCAACATTTG 58.049 45.000 17.00 0.00 32.29 2.32
5854 19488 2.706339 TTGGTTTGCTGCCAACATTT 57.294 40.000 17.00 0.00 40.69 2.32
5860 19494 2.760092 GAGGATAATTGGTTTGCTGCCA 59.240 45.455 0.00 0.00 0.00 4.92
5861 19495 3.026694 AGAGGATAATTGGTTTGCTGCC 58.973 45.455 0.00 0.00 0.00 4.85
5862 19496 5.835113 TTAGAGGATAATTGGTTTGCTGC 57.165 39.130 0.00 0.00 0.00 5.25
5863 19497 8.230472 AGATTTAGAGGATAATTGGTTTGCTG 57.770 34.615 0.00 0.00 0.00 4.41
5864 19498 8.055181 TGAGATTTAGAGGATAATTGGTTTGCT 58.945 33.333 0.00 0.00 0.00 3.91
5865 19499 8.131731 GTGAGATTTAGAGGATAATTGGTTTGC 58.868 37.037 0.00 0.00 0.00 3.68
5866 19500 9.177608 TGTGAGATTTAGAGGATAATTGGTTTG 57.822 33.333 0.00 0.00 0.00 2.93
5867 19501 9.927081 ATGTGAGATTTAGAGGATAATTGGTTT 57.073 29.630 0.00 0.00 0.00 3.27
5868 19502 9.347240 CATGTGAGATTTAGAGGATAATTGGTT 57.653 33.333 0.00 0.00 0.00 3.67
5869 19503 7.446625 GCATGTGAGATTTAGAGGATAATTGGT 59.553 37.037 0.00 0.00 0.00 3.67
5870 19504 7.094463 GGCATGTGAGATTTAGAGGATAATTGG 60.094 40.741 0.00 0.00 0.00 3.16
5871 19505 7.664731 AGGCATGTGAGATTTAGAGGATAATTG 59.335 37.037 0.00 0.00 0.00 2.32
5872 19506 7.753630 AGGCATGTGAGATTTAGAGGATAATT 58.246 34.615 0.00 0.00 0.00 1.40
5873 19507 7.327064 AGGCATGTGAGATTTAGAGGATAAT 57.673 36.000 0.00 0.00 0.00 1.28
5874 19508 6.753913 AGGCATGTGAGATTTAGAGGATAA 57.246 37.500 0.00 0.00 0.00 1.75
5875 19509 7.855784 TTAGGCATGTGAGATTTAGAGGATA 57.144 36.000 0.00 0.00 0.00 2.59
5876 19510 6.753913 TTAGGCATGTGAGATTTAGAGGAT 57.246 37.500 0.00 0.00 0.00 3.24
5877 19511 6.560003 TTTAGGCATGTGAGATTTAGAGGA 57.440 37.500 0.00 0.00 0.00 3.71
5878 19512 7.337942 ACTTTTTAGGCATGTGAGATTTAGAGG 59.662 37.037 0.00 0.00 0.00 3.69
5879 19513 8.273780 ACTTTTTAGGCATGTGAGATTTAGAG 57.726 34.615 0.00 0.00 0.00 2.43
5880 19514 8.635765 AACTTTTTAGGCATGTGAGATTTAGA 57.364 30.769 0.00 0.00 0.00 2.10
5881 19515 7.693951 CGAACTTTTTAGGCATGTGAGATTTAG 59.306 37.037 0.00 0.00 0.00 1.85
5882 19516 7.174253 ACGAACTTTTTAGGCATGTGAGATTTA 59.826 33.333 0.00 0.00 0.00 1.40
5883 19517 6.016276 ACGAACTTTTTAGGCATGTGAGATTT 60.016 34.615 0.00 0.00 0.00 2.17
5893 19527 4.444536 ACTGTGTACGAACTTTTTAGGCA 58.555 39.130 0.00 0.00 0.00 4.75
5906 19559 6.752351 AGCTTTGATCACTATAACTGTGTACG 59.248 38.462 0.00 0.00 36.83 3.67
5916 19569 8.461222 CAAATTTGTGGAGCTTTGATCACTATA 58.539 33.333 10.15 0.00 31.76 1.31
5958 19613 2.754552 CCCACAATTCGAACCATCACAT 59.245 45.455 0.00 0.00 0.00 3.21
6095 19861 4.350368 TCTGTATGCTCAACCAAAGTCA 57.650 40.909 0.00 0.00 0.00 3.41
6096 19862 4.937620 TGATCTGTATGCTCAACCAAAGTC 59.062 41.667 0.00 0.00 0.00 3.01
6097 19863 4.697352 GTGATCTGTATGCTCAACCAAAGT 59.303 41.667 0.00 0.00 0.00 2.66
6098 19864 4.201753 CGTGATCTGTATGCTCAACCAAAG 60.202 45.833 0.00 0.00 0.00 2.77
6100 19866 3.056179 TCGTGATCTGTATGCTCAACCAA 60.056 43.478 0.00 0.00 0.00 3.67
6101 19867 2.495669 TCGTGATCTGTATGCTCAACCA 59.504 45.455 0.00 0.00 0.00 3.67
6102 19868 3.119291 CTCGTGATCTGTATGCTCAACC 58.881 50.000 0.00 0.00 0.00 3.77
6157 19931 5.125097 GTGCTGTTCTCATTCTCATTTGGAT 59.875 40.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.