Multiple sequence alignment - TraesCS2D01G281900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G281900 chr2D 100.000 3613 0 0 1 3613 354815925 354812313 0.000000e+00 6673
1 TraesCS2D01G281900 chr2D 98.018 908 17 1 2707 3613 375656670 375657577 0.000000e+00 1576
2 TraesCS2D01G281900 chr2A 94.725 1346 60 3 1369 2714 474747656 474746322 0.000000e+00 2082
3 TraesCS2D01G281900 chr2A 91.454 784 50 9 2832 3613 81002513 81001745 0.000000e+00 1061
4 TraesCS2D01G281900 chr2A 89.910 555 35 12 3060 3613 648163458 648162924 0.000000e+00 695
5 TraesCS2D01G281900 chr2A 90.038 532 42 5 798 1322 474748183 474747656 0.000000e+00 678
6 TraesCS2D01G281900 chr2A 94.421 233 13 0 2832 3064 648182848 648182616 3.430000e-95 359
7 TraesCS2D01G281900 chr2B 88.165 1673 151 28 376 2030 422135713 422137356 0.000000e+00 1949
8 TraesCS2D01G281900 chr2B 92.330 691 42 8 2030 2714 422137390 422138075 0.000000e+00 972
9 TraesCS2D01G281900 chr6D 97.910 909 18 1 2706 3613 289627451 289626543 0.000000e+00 1572
10 TraesCS2D01G281900 chr6D 97.903 906 18 1 2709 3613 48148229 48149134 0.000000e+00 1567
11 TraesCS2D01G281900 chr6D 97.461 906 22 1 2709 3613 28645428 28646333 0.000000e+00 1544
12 TraesCS2D01G281900 chr6D 75.350 357 58 19 3 334 468881124 468880773 1.050000e-30 145
13 TraesCS2D01G281900 chr4D 97.792 906 19 1 2709 3613 57025178 57026083 0.000000e+00 1561
14 TraesCS2D01G281900 chr4D 79.921 762 124 24 2 752 39392818 39393561 1.910000e-147 532
15 TraesCS2D01G281900 chr3D 97.461 906 22 1 2709 3613 564631091 564630186 0.000000e+00 1544
16 TraesCS2D01G281900 chr3D 79.051 759 132 19 13 753 544357449 544356700 2.510000e-136 496
17 TraesCS2D01G281900 chr3D 79.004 743 127 23 93 818 105495667 105494937 7.020000e-132 481
18 TraesCS2D01G281900 chr1D 96.909 906 27 1 2709 3613 464638955 464638050 0.000000e+00 1517
19 TraesCS2D01G281900 chr1D 88.288 111 9 4 2709 2817 251395666 251395558 2.930000e-26 130
20 TraesCS2D01G281900 chr6B 79.352 833 127 33 25 824 560202166 560202986 8.820000e-151 544
21 TraesCS2D01G281900 chr7D 79.534 772 128 20 2 753 94666759 94667520 1.150000e-144 523
22 TraesCS2D01G281900 chr1B 78.471 850 145 29 6 829 317993921 317993084 4.130000e-144 521
23 TraesCS2D01G281900 chr7B 79.376 737 127 18 93 814 653979260 653979986 2.510000e-136 496
24 TraesCS2D01G281900 chr3B 78.473 799 139 20 25 800 120272273 120271485 3.240000e-135 492
25 TraesCS2D01G281900 chr3A 78.282 815 139 28 28 818 498258174 498257374 1.170000e-134 490
26 TraesCS2D01G281900 chr4B 77.834 794 157 12 46 827 595292581 595291795 1.170000e-129 473


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G281900 chr2D 354812313 354815925 3612 True 6673.0 6673 100.0000 1 3613 1 chr2D.!!$R1 3612
1 TraesCS2D01G281900 chr2D 375656670 375657577 907 False 1576.0 1576 98.0180 2707 3613 1 chr2D.!!$F1 906
2 TraesCS2D01G281900 chr2A 474746322 474748183 1861 True 1380.0 2082 92.3815 798 2714 2 chr2A.!!$R4 1916
3 TraesCS2D01G281900 chr2A 81001745 81002513 768 True 1061.0 1061 91.4540 2832 3613 1 chr2A.!!$R1 781
4 TraesCS2D01G281900 chr2A 648162924 648163458 534 True 695.0 695 89.9100 3060 3613 1 chr2A.!!$R2 553
5 TraesCS2D01G281900 chr2B 422135713 422138075 2362 False 1460.5 1949 90.2475 376 2714 2 chr2B.!!$F1 2338
6 TraesCS2D01G281900 chr6D 289626543 289627451 908 True 1572.0 1572 97.9100 2706 3613 1 chr6D.!!$R1 907
7 TraesCS2D01G281900 chr6D 48148229 48149134 905 False 1567.0 1567 97.9030 2709 3613 1 chr6D.!!$F2 904
8 TraesCS2D01G281900 chr6D 28645428 28646333 905 False 1544.0 1544 97.4610 2709 3613 1 chr6D.!!$F1 904
9 TraesCS2D01G281900 chr4D 57025178 57026083 905 False 1561.0 1561 97.7920 2709 3613 1 chr4D.!!$F2 904
10 TraesCS2D01G281900 chr4D 39392818 39393561 743 False 532.0 532 79.9210 2 752 1 chr4D.!!$F1 750
11 TraesCS2D01G281900 chr3D 564630186 564631091 905 True 1544.0 1544 97.4610 2709 3613 1 chr3D.!!$R3 904
12 TraesCS2D01G281900 chr3D 544356700 544357449 749 True 496.0 496 79.0510 13 753 1 chr3D.!!$R2 740
13 TraesCS2D01G281900 chr3D 105494937 105495667 730 True 481.0 481 79.0040 93 818 1 chr3D.!!$R1 725
14 TraesCS2D01G281900 chr1D 464638050 464638955 905 True 1517.0 1517 96.9090 2709 3613 1 chr1D.!!$R2 904
15 TraesCS2D01G281900 chr6B 560202166 560202986 820 False 544.0 544 79.3520 25 824 1 chr6B.!!$F1 799
16 TraesCS2D01G281900 chr7D 94666759 94667520 761 False 523.0 523 79.5340 2 753 1 chr7D.!!$F1 751
17 TraesCS2D01G281900 chr1B 317993084 317993921 837 True 521.0 521 78.4710 6 829 1 chr1B.!!$R1 823
18 TraesCS2D01G281900 chr7B 653979260 653979986 726 False 496.0 496 79.3760 93 814 1 chr7B.!!$F1 721
19 TraesCS2D01G281900 chr3B 120271485 120272273 788 True 492.0 492 78.4730 25 800 1 chr3B.!!$R1 775
20 TraesCS2D01G281900 chr3A 498257374 498258174 800 True 490.0 490 78.2820 28 818 1 chr3A.!!$R1 790
21 TraesCS2D01G281900 chr4B 595291795 595292581 786 True 473.0 473 77.8340 46 827 1 chr4B.!!$R1 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 152 0.616111 AGCTCCTGTCCCACGATCTT 60.616 55.0 0.0 0.0 0.0 2.40 F
1037 1093 0.912486 CCGTCCTCCTCCCAAATTCT 59.088 55.0 0.0 0.0 0.0 2.40 F
1356 1418 0.179234 TCTCAACCCGTTCTGCACAA 59.821 50.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1113 1169 0.313987 GTTTGGGGTTGAAGAAGGCG 59.686 55.0 0.0 0.0 0.00 5.52 R
2296 2401 0.184692 TGGAACCACCTGAACATGCA 59.815 50.0 0.0 0.0 39.86 3.96 R
3230 3337 0.390860 GTGGAGATCACGCCTGCTAT 59.609 55.0 0.0 0.0 36.56 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.845447 GCCCATGCTGGCCCATCA 62.845 66.667 0.00 0.00 46.11 3.07
44 45 2.520982 CCCATGCTGGCCCATCAG 60.521 66.667 0.00 0.00 35.79 2.90
123 144 2.352805 CACCCAAGCTCCTGTCCC 59.647 66.667 0.00 0.00 0.00 4.46
131 152 0.616111 AGCTCCTGTCCCACGATCTT 60.616 55.000 0.00 0.00 0.00 2.40
137 158 1.141234 GTCCCACGATCTTCGACCC 59.859 63.158 3.62 0.00 43.74 4.46
183 204 0.967380 GGGTCCTGCACCTCCAAATG 60.967 60.000 0.00 0.00 45.95 2.32
225 246 3.474570 CGGCCCCAAGGAGGAGAG 61.475 72.222 0.00 0.00 41.22 3.20
475 502 4.063967 TCCGACGCGAACATGGCT 62.064 61.111 15.93 0.00 0.00 4.75
689 728 2.182030 GTCAGGGTTCGAGGCTCG 59.818 66.667 30.10 30.10 42.10 5.03
712 751 4.223032 GGACAAGGAAGAGTAGGACATGAA 59.777 45.833 0.00 0.00 0.00 2.57
757 806 3.003113 GCCGGCTCGTGTCCTACTT 62.003 63.158 22.15 0.00 0.00 2.24
760 809 1.202268 CCGGCTCGTGTCCTACTTTAG 60.202 57.143 0.00 0.00 0.00 1.85
796 845 1.734477 CAACACTCTGAGGGACGCG 60.734 63.158 15.05 3.53 0.00 6.01
842 898 1.153429 GCTCGGGTTAAGATGCCGT 60.153 57.895 0.00 0.00 0.00 5.68
892 948 4.395231 GGTTATTCCTCTTCCGACTTTTGG 59.605 45.833 0.00 0.00 0.00 3.28
893 949 3.790089 ATTCCTCTTCCGACTTTTGGT 57.210 42.857 0.00 0.00 0.00 3.67
919 975 4.308458 CGAACAGGGTGCACGGGA 62.308 66.667 11.45 0.00 0.00 5.14
920 976 2.358737 GAACAGGGTGCACGGGAG 60.359 66.667 11.45 3.19 0.00 4.30
1000 1056 2.235155 TGTATCGACAGGCTTTGGCTTA 59.765 45.455 0.00 0.00 35.88 3.09
1006 1062 1.005215 ACAGGCTTTGGCTTATGCTCT 59.995 47.619 0.13 0.00 35.88 4.09
1010 1066 2.757314 GGCTTTGGCTTATGCTCTTCTT 59.243 45.455 0.13 0.00 39.59 2.52
1037 1093 0.912486 CCGTCCTCCTCCCAAATTCT 59.088 55.000 0.00 0.00 0.00 2.40
1113 1169 2.288666 TCTCCATGCAAGATTAACCGC 58.711 47.619 0.00 0.00 0.00 5.68
1140 1196 3.053245 TCTTCAACCCCAAACCAGAGAAA 60.053 43.478 0.00 0.00 0.00 2.52
1177 1239 2.159382 ACGCCCTGGTACTTTTGATTG 58.841 47.619 0.00 0.00 0.00 2.67
1310 1372 2.173669 CGAGGAATCACGCGGCATT 61.174 57.895 12.47 7.90 0.00 3.56
1322 1384 2.095853 ACGCGGCATTTCAAGTAATCTG 59.904 45.455 12.47 0.00 0.00 2.90
1324 1386 3.426159 CGCGGCATTTCAAGTAATCTGTT 60.426 43.478 0.00 0.00 0.00 3.16
1326 1388 4.334443 CGGCATTTCAAGTAATCTGTTCG 58.666 43.478 0.00 0.00 0.00 3.95
1327 1389 4.662145 GGCATTTCAAGTAATCTGTTCGG 58.338 43.478 0.00 0.00 0.00 4.30
1346 1408 2.084546 GGTCAAGGAAATCTCAACCCG 58.915 52.381 0.00 0.00 0.00 5.28
1356 1418 0.179234 TCTCAACCCGTTCTGCACAA 59.821 50.000 0.00 0.00 0.00 3.33
1622 1684 1.130373 CCATACTTTGCATGCGTCGTT 59.870 47.619 14.09 0.00 0.00 3.85
1643 1705 0.453950 GCAAGTCGCATGTTCAGCAG 60.454 55.000 0.00 0.00 41.79 4.24
1713 1775 5.890985 ACACAGATCTGATTCAGTAGCTAGT 59.109 40.000 29.27 0.00 32.61 2.57
1776 1838 5.655488 ACAGTTCTATATCTGTCACTGCAC 58.345 41.667 0.00 0.00 40.28 4.57
1784 1846 4.607293 ATCTGTCACTGCACTTTAGTCA 57.393 40.909 0.00 0.00 0.00 3.41
1824 1886 6.834168 TTGAAGTTTCCTTGTTCACTTCTT 57.166 33.333 11.17 0.00 43.72 2.52
1839 1901 6.861065 TCACTTCTTGTTCCAGATTTGTAC 57.139 37.500 0.00 0.00 0.00 2.90
1849 1911 8.547967 TGTTCCAGATTTGTACTTTCACTATC 57.452 34.615 0.00 0.00 0.00 2.08
1851 1913 8.999431 GTTCCAGATTTGTACTTTCACTATCAA 58.001 33.333 0.00 0.00 0.00 2.57
1928 1990 4.111198 CAGATTCAGTGTGATCCTTCTCG 58.889 47.826 0.00 0.00 0.00 4.04
1962 2024 9.797642 ATCATTGCTGTCAATTAACATATAGGA 57.202 29.630 0.00 0.00 40.74 2.94
1963 2025 9.276590 TCATTGCTGTCAATTAACATATAGGAG 57.723 33.333 0.00 0.00 40.74 3.69
2108 2210 4.202151 ACTTGTTCTGCAAATGGAGGAAAC 60.202 41.667 1.97 1.56 36.53 2.78
2171 2273 4.978083 ATTGCAGATGGACAAGCTAAAG 57.022 40.909 0.00 0.00 0.00 1.85
2195 2297 9.950496 AAGTATAGATGAACTTTGTGACTTCAT 57.050 29.630 0.00 0.00 37.34 2.57
2226 2328 4.553330 TGTTTCTCCCAGTACCTGAATC 57.447 45.455 0.00 0.00 32.44 2.52
2245 2350 5.949952 TGAATCTACAGCTGAGGTAGTACAA 59.050 40.000 23.35 0.00 39.36 2.41
2247 2352 6.852420 ATCTACAGCTGAGGTAGTACAAAA 57.148 37.500 23.35 0.00 39.36 2.44
2296 2401 1.525995 CGTTCTGGCCTGTTGGTGT 60.526 57.895 3.32 0.00 35.27 4.16
2297 2402 1.785041 CGTTCTGGCCTGTTGGTGTG 61.785 60.000 3.32 0.00 35.27 3.82
2298 2403 1.827789 TTCTGGCCTGTTGGTGTGC 60.828 57.895 3.32 0.00 35.27 4.57
2299 2404 2.519063 CTGGCCTGTTGGTGTGCA 60.519 61.111 3.32 0.00 35.27 4.57
2381 2486 4.954118 ACCTGGCAGGGTCGGTCA 62.954 66.667 35.34 0.00 40.58 4.02
2626 2731 4.518211 GCTAGACTAGCGGAGTAACCATAA 59.482 45.833 18.38 0.00 42.62 1.90
2680 2785 4.890088 CCATATGGCATTGGGATTTGAAG 58.110 43.478 9.29 0.00 0.00 3.02
2726 2831 1.183549 AACTAGTAGACTGCCCGTGG 58.816 55.000 3.59 0.00 0.00 4.94
2748 2853 1.773410 ACCCACGCGCATTTAAAAAC 58.227 45.000 5.73 0.00 0.00 2.43
2857 2962 3.326588 TGTGGCAGTATCACTAAAGTGGT 59.673 43.478 10.11 5.70 45.65 4.16
3036 3142 7.628234 TCTCAAATAGCTTGATCTTCTTCCTT 58.372 34.615 0.00 0.00 43.20 3.36
3177 3284 1.812571 GTTGGCCTTGTCATAGTGGTG 59.187 52.381 3.32 0.00 0.00 4.17
3178 3285 1.064003 TGGCCTTGTCATAGTGGTGT 58.936 50.000 3.32 0.00 0.00 4.16
3230 3337 3.556843 CCACTGTGGTGATGACACATACA 60.557 47.826 18.76 0.00 46.60 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.852578 GGGATGAATATATGTGGGGTCCT 59.147 47.826 0.00 0.00 0.00 3.85
44 45 3.053619 GGGGATGAATATATGTGGGGTCC 60.054 52.174 0.00 0.00 0.00 4.46
123 144 0.382515 GGAGAGGGTCGAAGATCGTG 59.617 60.000 0.00 0.00 39.56 4.35
131 152 3.147595 CATGCCGGAGAGGGTCGA 61.148 66.667 5.05 0.00 41.48 4.20
165 186 1.598701 GCATTTGGAGGTGCAGGACC 61.599 60.000 1.97 1.97 46.58 4.46
250 271 3.077556 GCTGCCTCCTCTCGGGAA 61.078 66.667 0.00 0.00 44.58 3.97
317 342 0.947244 GGTGGATCCATGCGTCATTC 59.053 55.000 19.62 0.71 35.97 2.67
386 413 4.651008 GTCCACCACCGCGTTCGA 62.651 66.667 4.92 0.00 38.10 3.71
682 721 0.174617 CTCTTCCTTGTCCGAGCCTC 59.825 60.000 0.00 0.00 0.00 4.70
689 728 3.769844 TCATGTCCTACTCTTCCTTGTCC 59.230 47.826 0.00 0.00 0.00 4.02
757 806 2.872557 CGGTCGTCGGTGAGCTAA 59.127 61.111 0.00 0.00 34.27 3.09
873 929 3.790089 ACCAAAAGTCGGAAGAGGAAT 57.210 42.857 0.00 0.00 43.49 3.01
938 994 5.416271 ACATCAGTACAGTCGGGTAAAAT 57.584 39.130 0.00 0.00 0.00 1.82
1000 1056 2.025887 ACGGGATGGAAAAGAAGAGCAT 60.026 45.455 0.00 0.00 0.00 3.79
1006 1062 1.280998 GGAGGACGGGATGGAAAAGAA 59.719 52.381 0.00 0.00 0.00 2.52
1010 1066 0.981277 GGAGGAGGACGGGATGGAAA 60.981 60.000 0.00 0.00 0.00 3.13
1037 1093 3.961849 TGGTGCATTCTTACCATTGCTA 58.038 40.909 0.00 0.00 41.80 3.49
1113 1169 0.313987 GTTTGGGGTTGAAGAAGGCG 59.686 55.000 0.00 0.00 0.00 5.52
1177 1239 4.640789 ATCAGACGAAGTGTGGTAGATC 57.359 45.455 0.00 0.00 45.83 2.75
1310 1372 4.994852 CCTTGACCGAACAGATTACTTGAA 59.005 41.667 0.00 0.00 0.00 2.69
1322 1384 3.188667 GGTTGAGATTTCCTTGACCGAAC 59.811 47.826 0.00 0.00 0.00 3.95
1324 1386 2.290071 GGGTTGAGATTTCCTTGACCGA 60.290 50.000 0.00 0.00 33.48 4.69
1326 1388 2.084546 CGGGTTGAGATTTCCTTGACC 58.915 52.381 0.00 0.00 32.53 4.02
1327 1389 2.779506 ACGGGTTGAGATTTCCTTGAC 58.220 47.619 0.00 0.00 0.00 3.18
1643 1705 5.063817 GCATCATTTTACCACTTGAAATGGC 59.936 40.000 0.00 2.35 41.31 4.40
1713 1775 5.376625 AGTCATTCCTTTCTGCACAGTAAA 58.623 37.500 0.00 0.00 0.00 2.01
1776 1838 5.163447 TGACATATCCCGAACCTGACTAAAG 60.163 44.000 0.00 0.00 0.00 1.85
1784 1846 4.164221 ACTTCAATGACATATCCCGAACCT 59.836 41.667 0.00 0.00 0.00 3.50
1824 1886 8.154203 TGATAGTGAAAGTACAAATCTGGAACA 58.846 33.333 0.00 0.00 0.00 3.18
1849 1911 5.389859 TGCCCATTTTCAGTAGTCAATTG 57.610 39.130 0.00 0.00 0.00 2.32
1851 1913 6.418057 TTTTGCCCATTTTCAGTAGTCAAT 57.582 33.333 0.00 0.00 0.00 2.57
1928 1990 9.503427 GTTAATTGACAGCAATGATTTACTACC 57.497 33.333 0.00 0.00 43.71 3.18
1958 2020 8.716674 ACTGGTTCCGATTTATAATACTCCTA 57.283 34.615 0.00 0.00 0.00 2.94
1959 2021 7.289317 TGACTGGTTCCGATTTATAATACTCCT 59.711 37.037 0.00 0.00 0.00 3.69
1960 2022 7.439381 TGACTGGTTCCGATTTATAATACTCC 58.561 38.462 0.00 0.00 0.00 3.85
1961 2023 8.882415 TTGACTGGTTCCGATTTATAATACTC 57.118 34.615 0.00 0.00 0.00 2.59
1962 2024 9.847224 ATTTGACTGGTTCCGATTTATAATACT 57.153 29.630 0.00 0.00 0.00 2.12
1963 2025 9.878599 CATTTGACTGGTTCCGATTTATAATAC 57.121 33.333 0.00 0.00 0.00 1.89
2108 2210 3.243401 GCCTTTATATGAAACGCCCCAAG 60.243 47.826 0.00 0.00 0.00 3.61
2195 2297 1.146774 TGGGAGAAACATTGGAGCCAA 59.853 47.619 4.15 4.15 40.47 4.52
2226 2328 7.907214 AAATTTTGTACTACCTCAGCTGTAG 57.093 36.000 14.67 10.79 41.17 2.74
2245 2350 8.785946 CAACATTAGGAAATGCAAGGAAAATTT 58.214 29.630 0.00 0.00 45.41 1.82
2247 2352 6.880529 CCAACATTAGGAAATGCAAGGAAAAT 59.119 34.615 0.00 0.00 45.41 1.82
2296 2401 0.184692 TGGAACCACCTGAACATGCA 59.815 50.000 0.00 0.00 39.86 3.96
2297 2402 1.270550 CTTGGAACCACCTGAACATGC 59.729 52.381 0.00 0.00 39.86 4.06
2298 2403 1.888512 CCTTGGAACCACCTGAACATG 59.111 52.381 0.00 0.00 39.86 3.21
2299 2404 1.499007 ACCTTGGAACCACCTGAACAT 59.501 47.619 0.00 0.00 39.86 2.71
2381 2486 0.463295 CTGTGAAGCGCATCTCCCAT 60.463 55.000 14.40 0.00 0.00 4.00
2618 2723 5.042593 CGCAGGTAACATACGTTATGGTTA 58.957 41.667 0.00 0.00 39.72 2.85
2626 2731 0.738412 GCCACGCAGGTAACATACGT 60.738 55.000 0.00 0.00 41.36 3.57
2672 2777 3.739300 TCGGTTCGAGTTCACTTCAAATC 59.261 43.478 0.00 0.00 0.00 2.17
2726 2831 0.664767 TTTAAATGCGCGTGGGTTGC 60.665 50.000 8.43 0.00 0.00 4.17
2727 2832 1.772182 TTTTAAATGCGCGTGGGTTG 58.228 45.000 8.43 0.00 0.00 3.77
2728 2833 2.128821 GTTTTTAAATGCGCGTGGGTT 58.871 42.857 8.43 0.00 0.00 4.11
2729 2834 1.067212 TGTTTTTAAATGCGCGTGGGT 59.933 42.857 8.43 0.00 0.00 4.51
2730 2835 1.772182 TGTTTTTAAATGCGCGTGGG 58.228 45.000 8.43 0.00 0.00 4.61
2736 2841 6.074088 TGCAACTGGTAATGTTTTTAAATGCG 60.074 34.615 0.00 0.00 0.00 4.73
2857 2962 0.413832 AGCCTAGGAGGTCAGGACAA 59.586 55.000 14.75 0.00 37.80 3.18
3036 3142 6.566141 CCAACATGCATCATTGTTAGATTGA 58.434 36.000 15.70 0.00 0.00 2.57
3177 3284 3.829886 TCGACTGATTCAATGCCAAAC 57.170 42.857 0.00 0.00 0.00 2.93
3178 3285 3.427909 GCATCGACTGATTCAATGCCAAA 60.428 43.478 9.06 0.00 30.49 3.28
3230 3337 0.390860 GTGGAGATCACGCCTGCTAT 59.609 55.000 0.00 0.00 36.56 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.