Multiple sequence alignment - TraesCS2D01G281800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G281800 chr2D 100.000 2786 0 0 1 2786 354803380 354806165 0.000000e+00 5145.0
1 TraesCS2D01G281800 chr2D 97.050 678 18 2 2110 2786 375664403 375663727 0.000000e+00 1140.0
2 TraesCS2D01G281800 chr2D 93.785 354 18 4 419 769 448120319 448119967 1.900000e-146 529.0
3 TraesCS2D01G281800 chr2D 91.081 370 17 9 415 768 600400903 600400534 1.160000e-133 486.0
4 TraesCS2D01G281800 chr2D 95.588 136 5 1 629 764 595905363 595905229 1.680000e-52 217.0
5 TraesCS2D01G281800 chr2D 95.652 46 1 1 179 223 354803525 354803570 3.850000e-09 73.1
6 TraesCS2D01G281800 chr2D 95.652 46 1 1 146 191 354803558 354803602 3.850000e-09 73.1
7 TraesCS2D01G281800 chr2A 94.678 1165 50 7 761 1922 474743597 474744752 0.000000e+00 1797.0
8 TraesCS2D01G281800 chr2A 95.652 207 9 0 209 415 474743402 474743608 1.600000e-87 333.0
9 TraesCS2D01G281800 chr2A 89.630 135 14 0 1976 2110 474746193 474746327 3.690000e-39 172.0
10 TraesCS2D01G281800 chr2B 93.339 1126 45 8 824 1941 422191708 422190605 0.000000e+00 1637.0
11 TraesCS2D01G281800 chr6D 97.496 679 13 3 2110 2786 289615946 289616622 0.000000e+00 1157.0
12 TraesCS2D01G281800 chr6D 96.652 687 15 5 2107 2786 28653162 28652477 0.000000e+00 1134.0
13 TraesCS2D01G281800 chr6D 96.608 678 17 4 2112 2786 48155955 48155281 0.000000e+00 1120.0
14 TraesCS2D01G281800 chr6D 94.048 252 9 4 419 665 45622187 45622437 7.280000e-101 377.0
15 TraesCS2D01G281800 chr6D 90.854 164 7 6 605 763 461428964 461429124 2.170000e-51 213.0
16 TraesCS2D01G281800 chr3D 97.485 676 16 1 2112 2786 564623365 564624040 0.000000e+00 1153.0
17 TraesCS2D01G281800 chr3D 91.515 330 11 4 450 764 148240634 148240307 3.290000e-119 438.0
18 TraesCS2D01G281800 chr4D 97.063 681 16 3 2110 2786 57032896 57032216 0.000000e+00 1144.0
19 TraesCS2D01G281800 chr4D 90.289 381 15 7 419 778 14974433 14974054 1.940000e-131 479.0
20 TraesCS2D01G281800 chr4D 90.000 370 13 9 419 766 434278380 434278013 9.090000e-125 457.0
21 TraesCS2D01G281800 chr4D 96.350 137 3 2 629 764 378490345 378490210 1.000000e-54 224.0
22 TraesCS2D01G281800 chr1D 96.903 678 19 2 2110 2786 464631235 464631911 0.000000e+00 1134.0
23 TraesCS2D01G281800 chr1D 96.160 677 24 2 2110 2786 371664481 371665155 0.000000e+00 1105.0
24 TraesCS2D01G281800 chr1D 92.308 351 20 3 415 764 487740527 487740183 2.490000e-135 492.0
25 TraesCS2D01G281800 chr1D 92.509 267 14 4 404 665 468804441 468804706 7.280000e-101 377.0
26 TraesCS2D01G281800 chr1D 92.460 252 16 3 415 665 332963052 332963301 9.490000e-95 357.0
27 TraesCS2D01G281800 chr7D 96.171 679 22 4 2110 2786 553509001 553508325 0.000000e+00 1107.0
28 TraesCS2D01G281800 chr5D 90.591 372 13 8 413 763 440155585 440155955 9.030000e-130 473.0
29 TraesCS2D01G281800 chr5D 93.436 259 12 1 412 665 522063211 522063469 2.030000e-101 379.0
30 TraesCS2D01G281800 chr5D 96.889 225 7 0 414 638 255469897 255469673 7.280000e-101 377.0
31 TraesCS2D01G281800 chr7B 92.466 146 11 0 637 782 562990255 562990110 2.810000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G281800 chr2D 354803380 354806165 2785 False 1763.733333 5145 97.101333 1 2786 3 chr2D.!!$F1 2785
1 TraesCS2D01G281800 chr2D 375663727 375664403 676 True 1140.000000 1140 97.050000 2110 2786 1 chr2D.!!$R1 676
2 TraesCS2D01G281800 chr2A 474743402 474746327 2925 False 767.333333 1797 93.320000 209 2110 3 chr2A.!!$F1 1901
3 TraesCS2D01G281800 chr2B 422190605 422191708 1103 True 1637.000000 1637 93.339000 824 1941 1 chr2B.!!$R1 1117
4 TraesCS2D01G281800 chr6D 289615946 289616622 676 False 1157.000000 1157 97.496000 2110 2786 1 chr6D.!!$F2 676
5 TraesCS2D01G281800 chr6D 28652477 28653162 685 True 1134.000000 1134 96.652000 2107 2786 1 chr6D.!!$R1 679
6 TraesCS2D01G281800 chr6D 48155281 48155955 674 True 1120.000000 1120 96.608000 2112 2786 1 chr6D.!!$R2 674
7 TraesCS2D01G281800 chr3D 564623365 564624040 675 False 1153.000000 1153 97.485000 2112 2786 1 chr3D.!!$F1 674
8 TraesCS2D01G281800 chr4D 57032216 57032896 680 True 1144.000000 1144 97.063000 2110 2786 1 chr4D.!!$R2 676
9 TraesCS2D01G281800 chr1D 464631235 464631911 676 False 1134.000000 1134 96.903000 2110 2786 1 chr1D.!!$F3 676
10 TraesCS2D01G281800 chr1D 371664481 371665155 674 False 1105.000000 1105 96.160000 2110 2786 1 chr1D.!!$F2 676
11 TraesCS2D01G281800 chr7D 553508325 553509001 676 True 1107.000000 1107 96.171000 2110 2786 1 chr7D.!!$R1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.034186 AATCAATCTGCTTCGGCCCA 60.034 50.0 0.0 0.00 40.91 5.36 F
550 551 0.034756 ATACTGTGCAACGCCTCACA 59.965 50.0 0.0 4.54 42.39 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 1712 0.804989 GCGACCATGGTTCCAAGAAG 59.195 55.0 20.85 4.72 0.0 2.85 R
2016 3407 1.222115 GAGCGCCTTTGTTCGTGTCT 61.222 55.0 2.29 0.00 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.930634 AGTTTGCCTTCTTTGCTGATC 57.069 42.857 0.00 0.00 0.00 2.92
23 24 3.225104 AGTTTGCCTTCTTTGCTGATCA 58.775 40.909 0.00 0.00 0.00 2.92
24 25 3.638160 AGTTTGCCTTCTTTGCTGATCAA 59.362 39.130 0.00 0.00 0.00 2.57
25 26 4.282703 AGTTTGCCTTCTTTGCTGATCAAT 59.717 37.500 0.00 0.00 34.12 2.57
26 27 4.445452 TTGCCTTCTTTGCTGATCAATC 57.555 40.909 0.00 0.00 34.12 2.67
27 28 2.421073 TGCCTTCTTTGCTGATCAATCG 59.579 45.455 0.00 0.00 34.12 3.34
28 29 2.793933 GCCTTCTTTGCTGATCAATCGC 60.794 50.000 0.00 0.00 34.12 4.58
29 30 2.681848 CCTTCTTTGCTGATCAATCGCT 59.318 45.455 6.93 0.00 34.12 4.93
30 31 3.128242 CCTTCTTTGCTGATCAATCGCTT 59.872 43.478 6.93 0.00 34.12 4.68
31 32 3.752412 TCTTTGCTGATCAATCGCTTG 57.248 42.857 6.93 0.00 34.12 4.01
32 33 3.076621 TCTTTGCTGATCAATCGCTTGT 58.923 40.909 6.93 0.00 34.12 3.16
33 34 2.905959 TTGCTGATCAATCGCTTGTG 57.094 45.000 6.93 0.00 33.87 3.33
34 35 2.097680 TGCTGATCAATCGCTTGTGA 57.902 45.000 6.93 0.00 33.87 3.58
35 36 2.425539 TGCTGATCAATCGCTTGTGAA 58.574 42.857 6.93 0.00 33.87 3.18
36 37 2.417586 TGCTGATCAATCGCTTGTGAAG 59.582 45.455 6.93 0.00 33.87 3.02
37 38 2.417933 GCTGATCAATCGCTTGTGAAGT 59.582 45.455 0.00 0.00 33.87 3.01
38 39 3.120060 GCTGATCAATCGCTTGTGAAGTT 60.120 43.478 0.00 0.00 33.87 2.66
39 40 4.400845 CTGATCAATCGCTTGTGAAGTTG 58.599 43.478 0.00 0.00 33.87 3.16
40 41 3.814842 TGATCAATCGCTTGTGAAGTTGT 59.185 39.130 0.00 0.00 33.87 3.32
41 42 3.607422 TCAATCGCTTGTGAAGTTGTG 57.393 42.857 0.00 0.00 33.87 3.33
42 43 3.202097 TCAATCGCTTGTGAAGTTGTGA 58.798 40.909 0.00 0.00 33.87 3.58
43 44 3.814842 TCAATCGCTTGTGAAGTTGTGAT 59.185 39.130 0.00 0.00 33.87 3.06
44 45 3.818961 ATCGCTTGTGAAGTTGTGATG 57.181 42.857 0.00 0.00 0.00 3.07
45 46 1.264020 TCGCTTGTGAAGTTGTGATGC 59.736 47.619 0.00 0.00 0.00 3.91
46 47 1.678360 GCTTGTGAAGTTGTGATGCG 58.322 50.000 0.00 0.00 0.00 4.73
47 48 1.264020 GCTTGTGAAGTTGTGATGCGA 59.736 47.619 0.00 0.00 0.00 5.10
48 49 2.908634 CTTGTGAAGTTGTGATGCGAC 58.091 47.619 0.00 0.00 0.00 5.19
49 50 0.858583 TGTGAAGTTGTGATGCGACG 59.141 50.000 0.00 0.00 36.60 5.12
50 51 0.163788 GTGAAGTTGTGATGCGACGG 59.836 55.000 0.00 0.00 36.60 4.79
51 52 0.948623 TGAAGTTGTGATGCGACGGG 60.949 55.000 0.00 0.00 36.60 5.28
52 53 1.635663 GAAGTTGTGATGCGACGGGG 61.636 60.000 0.00 0.00 36.60 5.73
53 54 2.047655 GTTGTGATGCGACGGGGA 60.048 61.111 0.00 0.00 0.00 4.81
54 55 1.669760 GTTGTGATGCGACGGGGAA 60.670 57.895 0.00 0.00 0.00 3.97
55 56 1.071642 TTGTGATGCGACGGGGAAA 59.928 52.632 0.00 0.00 0.00 3.13
56 57 0.322098 TTGTGATGCGACGGGGAAAT 60.322 50.000 0.00 0.00 0.00 2.17
57 58 0.742990 TGTGATGCGACGGGGAAATC 60.743 55.000 0.00 0.00 0.00 2.17
58 59 1.520564 TGATGCGACGGGGAAATCG 60.521 57.895 0.00 0.00 41.32 3.34
59 60 1.227147 GATGCGACGGGGAAATCGA 60.227 57.895 0.00 0.00 40.86 3.59
60 61 0.600255 GATGCGACGGGGAAATCGAT 60.600 55.000 0.00 0.00 40.86 3.59
61 62 0.600255 ATGCGACGGGGAAATCGATC 60.600 55.000 0.00 0.00 40.86 3.69
62 63 1.067582 GCGACGGGGAAATCGATCT 59.932 57.895 0.00 0.00 40.86 2.75
63 64 1.215655 GCGACGGGGAAATCGATCTG 61.216 60.000 0.00 0.00 40.86 2.90
64 65 0.597637 CGACGGGGAAATCGATCTGG 60.598 60.000 0.00 0.00 40.86 3.86
65 66 0.249911 GACGGGGAAATCGATCTGGG 60.250 60.000 0.00 0.00 0.00 4.45
66 67 0.689745 ACGGGGAAATCGATCTGGGA 60.690 55.000 0.00 0.00 0.00 4.37
67 68 0.687354 CGGGGAAATCGATCTGGGAT 59.313 55.000 0.00 0.00 0.00 3.85
68 69 1.072331 CGGGGAAATCGATCTGGGATT 59.928 52.381 0.00 0.00 35.71 3.01
69 70 2.508526 GGGGAAATCGATCTGGGATTG 58.491 52.381 0.00 0.00 34.50 2.67
70 71 1.882623 GGGAAATCGATCTGGGATTGC 59.117 52.381 0.00 0.00 34.50 3.56
71 72 2.575532 GGAAATCGATCTGGGATTGCA 58.424 47.619 0.00 0.00 34.50 4.08
72 73 3.152341 GGAAATCGATCTGGGATTGCAT 58.848 45.455 0.00 0.00 34.50 3.96
73 74 3.571401 GGAAATCGATCTGGGATTGCATT 59.429 43.478 0.00 0.00 34.50 3.56
74 75 4.543692 GAAATCGATCTGGGATTGCATTG 58.456 43.478 0.00 0.00 34.50 2.82
75 76 2.715749 TCGATCTGGGATTGCATTGT 57.284 45.000 0.00 0.00 0.00 2.71
76 77 2.291365 TCGATCTGGGATTGCATTGTG 58.709 47.619 0.00 0.00 0.00 3.33
77 78 1.268896 CGATCTGGGATTGCATTGTGC 60.269 52.381 0.00 0.00 45.29 4.57
94 95 8.818141 GCATTGTGCGGTATGTATATATAGAT 57.182 34.615 7.48 7.48 31.71 1.98
95 96 8.703336 GCATTGTGCGGTATGTATATATAGATG 58.297 37.037 11.67 0.00 31.71 2.90
96 97 8.703336 CATTGTGCGGTATGTATATATAGATGC 58.297 37.037 11.67 10.20 0.00 3.91
97 98 7.341445 TGTGCGGTATGTATATATAGATGCA 57.659 36.000 16.33 12.36 0.00 3.96
98 99 7.425606 TGTGCGGTATGTATATATAGATGCAG 58.574 38.462 16.33 13.94 0.00 4.41
99 100 6.863645 GTGCGGTATGTATATATAGATGCAGG 59.136 42.308 16.33 10.31 0.00 4.85
100 101 5.864474 GCGGTATGTATATATAGATGCAGGC 59.136 44.000 16.33 14.64 0.00 4.85
101 102 6.516693 GCGGTATGTATATATAGATGCAGGCA 60.517 42.308 16.33 0.00 0.00 4.75
102 103 6.863645 CGGTATGTATATATAGATGCAGGCAC 59.136 42.308 16.33 5.42 0.00 5.01
103 104 6.863645 GGTATGTATATATAGATGCAGGCACG 59.136 42.308 16.33 0.00 0.00 5.34
104 105 4.682787 TGTATATATAGATGCAGGCACGC 58.317 43.478 0.00 0.00 0.00 5.34
105 106 2.278026 TATATAGATGCAGGCACGCG 57.722 50.000 3.53 3.53 33.35 6.01
106 107 0.390340 ATATAGATGCAGGCACGCGG 60.390 55.000 12.47 0.00 33.35 6.46
107 108 1.460273 TATAGATGCAGGCACGCGGA 61.460 55.000 12.47 0.00 33.35 5.54
108 109 2.705934 ATAGATGCAGGCACGCGGAG 62.706 60.000 12.47 3.23 33.35 4.63
110 111 4.704833 ATGCAGGCACGCGGAGTT 62.705 61.111 12.47 0.00 33.35 3.01
115 116 4.778143 GGCACGCGGAGTTGGGAT 62.778 66.667 12.47 0.00 0.00 3.85
116 117 2.746277 GCACGCGGAGTTGGGATT 60.746 61.111 12.47 0.00 0.00 3.01
117 118 3.039202 GCACGCGGAGTTGGGATTG 62.039 63.158 12.47 0.00 0.00 2.67
118 119 2.046314 ACGCGGAGTTGGGATTGG 60.046 61.111 12.47 0.00 0.00 3.16
119 120 2.824041 CGCGGAGTTGGGATTGGG 60.824 66.667 0.00 0.00 0.00 4.12
120 121 2.674754 GCGGAGTTGGGATTGGGA 59.325 61.111 0.00 0.00 0.00 4.37
121 122 1.749258 GCGGAGTTGGGATTGGGAC 60.749 63.158 0.00 0.00 0.00 4.46
122 123 1.449601 CGGAGTTGGGATTGGGACG 60.450 63.158 0.00 0.00 0.00 4.79
123 124 1.749258 GGAGTTGGGATTGGGACGC 60.749 63.158 0.00 0.00 0.00 5.19
124 125 2.046314 AGTTGGGATTGGGACGCG 60.046 61.111 3.53 3.53 0.00 6.01
125 126 2.359478 GTTGGGATTGGGACGCGT 60.359 61.111 13.85 13.85 0.00 6.01
126 127 2.046700 TTGGGATTGGGACGCGTC 60.047 61.111 30.67 30.67 0.00 5.19
127 128 3.943479 TTGGGATTGGGACGCGTCG 62.943 63.158 30.99 0.00 0.00 5.12
129 130 4.446413 GGATTGGGACGCGTCGGT 62.446 66.667 30.99 17.23 0.00 4.69
130 131 2.433664 GATTGGGACGCGTCGGTT 60.434 61.111 30.99 16.60 0.00 4.44
131 132 2.433664 ATTGGGACGCGTCGGTTC 60.434 61.111 30.99 20.18 0.00 3.62
132 133 2.830704 GATTGGGACGCGTCGGTTCT 62.831 60.000 30.99 15.39 0.00 3.01
133 134 2.444700 ATTGGGACGCGTCGGTTCTT 62.445 55.000 30.99 12.06 0.00 2.52
134 135 3.110178 GGGACGCGTCGGTTCTTG 61.110 66.667 30.99 0.00 0.00 3.02
135 136 3.774702 GGACGCGTCGGTTCTTGC 61.775 66.667 30.99 12.33 0.00 4.01
136 137 2.733593 GACGCGTCGGTTCTTGCT 60.734 61.111 25.19 0.00 0.00 3.91
137 138 1.443194 GACGCGTCGGTTCTTGCTA 60.443 57.895 25.19 0.00 0.00 3.49
138 139 1.005294 GACGCGTCGGTTCTTGCTAA 61.005 55.000 25.19 0.00 0.00 3.09
139 140 0.389426 ACGCGTCGGTTCTTGCTAAT 60.389 50.000 5.58 0.00 0.00 1.73
140 141 0.297820 CGCGTCGGTTCTTGCTAATC 59.702 55.000 0.00 0.00 0.00 1.75
141 142 0.651031 GCGTCGGTTCTTGCTAATCC 59.349 55.000 0.00 0.00 0.00 3.01
142 143 0.921347 CGTCGGTTCTTGCTAATCCG 59.079 55.000 0.00 0.00 42.12 4.18
143 144 1.287425 GTCGGTTCTTGCTAATCCGG 58.713 55.000 0.00 0.00 41.27 5.14
144 145 0.461339 TCGGTTCTTGCTAATCCGGC 60.461 55.000 0.00 0.00 41.27 6.13
145 146 1.762222 CGGTTCTTGCTAATCCGGCG 61.762 60.000 0.00 0.00 37.92 6.46
146 147 1.352056 GTTCTTGCTAATCCGGCGC 59.648 57.895 0.00 0.00 0.00 6.53
147 148 1.817941 TTCTTGCTAATCCGGCGCC 60.818 57.895 19.07 19.07 0.00 6.53
148 149 3.640000 CTTGCTAATCCGGCGCCG 61.640 66.667 41.00 41.00 39.44 6.46
174 175 3.261951 CGCGTATTCGGCCCTGTG 61.262 66.667 0.00 0.00 37.56 3.66
175 176 3.573491 GCGTATTCGGCCCTGTGC 61.573 66.667 0.00 0.00 37.56 4.57
206 207 3.261951 CGCGTATTCGGCCCTGTG 61.262 66.667 0.00 0.00 37.56 3.66
207 208 3.573491 GCGTATTCGGCCCTGTGC 61.573 66.667 0.00 0.00 37.56 4.57
240 241 3.771160 GGGAGGAGAAAGCGCGGA 61.771 66.667 8.83 0.00 0.00 5.54
256 257 1.006805 GGAGTGCCATCTCGATCGG 60.007 63.158 16.41 6.26 35.52 4.18
270 271 1.737236 CGATCGGTTCTGCATTTGGAA 59.263 47.619 7.38 0.00 0.00 3.53
282 283 4.751060 TGCATTTGGAATCAATCTGCTTC 58.249 39.130 12.19 0.00 40.03 3.86
288 289 0.034186 AATCAATCTGCTTCGGCCCA 60.034 50.000 0.00 0.00 40.91 5.36
289 290 0.465097 ATCAATCTGCTTCGGCCCAG 60.465 55.000 0.00 0.00 40.91 4.45
342 343 3.072468 TGCCTCCTTACGGACCGG 61.072 66.667 20.00 0.00 34.92 5.28
410 411 0.237498 GTGCGTTAGTGGGCTTGAAC 59.763 55.000 0.00 0.00 0.00 3.18
411 412 0.887387 TGCGTTAGTGGGCTTGAACC 60.887 55.000 0.00 0.00 0.00 3.62
412 413 1.908066 GCGTTAGTGGGCTTGAACCG 61.908 60.000 0.00 0.00 0.00 4.44
413 414 1.296056 CGTTAGTGGGCTTGAACCGG 61.296 60.000 0.00 0.00 0.00 5.28
414 415 1.302993 TTAGTGGGCTTGAACCGGC 60.303 57.895 0.00 0.00 0.00 6.13
415 416 3.599285 TAGTGGGCTTGAACCGGCG 62.599 63.158 0.00 0.00 0.00 6.46
418 419 4.397832 GGGCTTGAACCGGCGGTA 62.398 66.667 34.37 15.91 33.12 4.02
419 420 2.358984 GGCTTGAACCGGCGGTAA 60.359 61.111 34.37 22.67 33.12 2.85
420 421 1.967494 GGCTTGAACCGGCGGTAAA 60.967 57.895 34.37 26.63 33.12 2.01
421 422 1.310216 GGCTTGAACCGGCGGTAAAT 61.310 55.000 34.37 18.09 33.12 1.40
422 423 0.524414 GCTTGAACCGGCGGTAAATT 59.476 50.000 34.37 17.64 33.12 1.82
423 424 1.068125 GCTTGAACCGGCGGTAAATTT 60.068 47.619 34.37 17.18 33.12 1.82
424 425 2.591133 CTTGAACCGGCGGTAAATTTG 58.409 47.619 34.37 16.26 33.12 2.32
425 426 1.893544 TGAACCGGCGGTAAATTTGA 58.106 45.000 34.37 7.52 33.12 2.69
426 427 1.536331 TGAACCGGCGGTAAATTTGAC 59.464 47.619 34.37 15.50 33.12 3.18
427 428 1.536331 GAACCGGCGGTAAATTTGACA 59.464 47.619 34.37 0.00 33.12 3.58
428 429 1.606903 ACCGGCGGTAAATTTGACAA 58.393 45.000 33.31 0.00 32.11 3.18
429 430 1.955080 ACCGGCGGTAAATTTGACAAA 59.045 42.857 33.31 2.48 32.11 2.83
430 431 2.559231 ACCGGCGGTAAATTTGACAAAT 59.441 40.909 33.31 7.62 32.11 2.32
431 432 3.006003 ACCGGCGGTAAATTTGACAAATT 59.994 39.130 33.31 18.41 42.62 1.82
444 445 9.840427 AAATTTGACAAATTTGACCTATAGACG 57.160 29.630 29.31 0.00 46.30 4.18
445 446 8.786826 ATTTGACAAATTTGACCTATAGACGA 57.213 30.769 24.64 0.00 0.00 4.20
446 447 8.610248 TTTGACAAATTTGACCTATAGACGAA 57.390 30.769 24.64 3.11 0.00 3.85
447 448 8.610248 TTGACAAATTTGACCTATAGACGAAA 57.390 30.769 24.64 2.44 0.00 3.46
448 449 8.786826 TGACAAATTTGACCTATAGACGAAAT 57.213 30.769 24.64 0.00 0.00 2.17
449 450 8.879759 TGACAAATTTGACCTATAGACGAAATC 58.120 33.333 24.64 6.30 0.00 2.17
450 451 8.786826 ACAAATTTGACCTATAGACGAAATCA 57.213 30.769 24.64 0.00 0.00 2.57
451 452 9.226606 ACAAATTTGACCTATAGACGAAATCAA 57.773 29.630 24.64 0.00 0.00 2.57
455 456 9.613428 ATTTGACCTATAGACGAAATCAAATCA 57.387 29.630 0.00 0.00 39.78 2.57
456 457 8.420374 TTGACCTATAGACGAAATCAAATCAC 57.580 34.615 0.00 0.00 0.00 3.06
457 458 7.552459 TGACCTATAGACGAAATCAAATCACA 58.448 34.615 0.00 0.00 0.00 3.58
458 459 7.706607 TGACCTATAGACGAAATCAAATCACAG 59.293 37.037 0.00 0.00 0.00 3.66
459 460 7.782049 ACCTATAGACGAAATCAAATCACAGA 58.218 34.615 0.00 0.00 0.00 3.41
460 461 8.258007 ACCTATAGACGAAATCAAATCACAGAA 58.742 33.333 0.00 0.00 0.00 3.02
461 462 9.265901 CCTATAGACGAAATCAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
463 464 8.722480 ATAGACGAAATCAAATCACAGAATGA 57.278 30.769 0.00 0.00 43.13 2.57
464 465 7.439157 AGACGAAATCAAATCACAGAATGAA 57.561 32.000 0.00 0.00 41.93 2.57
465 466 7.301054 AGACGAAATCAAATCACAGAATGAAC 58.699 34.615 0.00 0.00 41.93 3.18
466 467 7.173907 AGACGAAATCAAATCACAGAATGAACT 59.826 33.333 0.00 0.00 41.93 3.01
467 468 8.322906 ACGAAATCAAATCACAGAATGAACTA 57.677 30.769 0.00 0.00 41.93 2.24
468 469 8.950210 ACGAAATCAAATCACAGAATGAACTAT 58.050 29.630 0.00 0.00 41.93 2.12
469 470 9.778993 CGAAATCAAATCACAGAATGAACTATT 57.221 29.630 0.00 0.00 41.93 1.73
491 492 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
492 493 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
493 494 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
494 495 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
495 496 0.246635 ACTATTTCACGCGGCTGACT 59.753 50.000 12.47 0.00 0.00 3.41
496 497 1.337823 ACTATTTCACGCGGCTGACTT 60.338 47.619 12.47 0.00 0.00 3.01
497 498 1.732259 CTATTTCACGCGGCTGACTTT 59.268 47.619 12.47 0.00 0.00 2.66
498 499 0.951558 ATTTCACGCGGCTGACTTTT 59.048 45.000 12.47 0.00 0.00 2.27
499 500 0.736053 TTTCACGCGGCTGACTTTTT 59.264 45.000 12.47 0.00 0.00 1.94
513 514 4.220413 TTTTTGTGTGACGCCCGA 57.780 50.000 0.00 0.00 0.00 5.14
514 515 1.722677 TTTTTGTGTGACGCCCGAC 59.277 52.632 0.00 0.00 0.00 4.79
515 516 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
516 517 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
517 518 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
518 519 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
519 520 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
520 521 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
521 522 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
529 530 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
530 531 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
531 532 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
532 533 1.447838 CACGAAGGCGCCACACTAT 60.448 57.895 31.54 2.66 42.48 2.12
533 534 0.179121 CACGAAGGCGCCACACTATA 60.179 55.000 31.54 0.00 42.48 1.31
534 535 0.179119 ACGAAGGCGCCACACTATAC 60.179 55.000 31.54 8.98 42.48 1.47
535 536 0.102481 CGAAGGCGCCACACTATACT 59.898 55.000 31.54 0.00 0.00 2.12
536 537 1.571919 GAAGGCGCCACACTATACTG 58.428 55.000 31.54 0.00 0.00 2.74
537 538 0.902531 AAGGCGCCACACTATACTGT 59.097 50.000 31.54 0.00 0.00 3.55
538 539 0.175760 AGGCGCCACACTATACTGTG 59.824 55.000 31.54 5.74 41.19 3.66
539 540 1.429148 GGCGCCACACTATACTGTGC 61.429 60.000 24.80 0.00 40.33 4.57
540 541 0.739462 GCGCCACACTATACTGTGCA 60.739 55.000 0.00 0.00 40.33 4.57
541 542 1.720805 CGCCACACTATACTGTGCAA 58.279 50.000 6.92 0.00 40.33 4.08
542 543 1.393539 CGCCACACTATACTGTGCAAC 59.606 52.381 6.92 0.05 40.33 4.17
543 544 1.393539 GCCACACTATACTGTGCAACG 59.606 52.381 6.92 0.00 42.39 4.10
544 545 1.393539 CCACACTATACTGTGCAACGC 59.606 52.381 6.92 0.00 42.39 4.84
545 546 1.393539 CACACTATACTGTGCAACGCC 59.606 52.381 0.00 0.00 42.39 5.68
546 547 1.275291 ACACTATACTGTGCAACGCCT 59.725 47.619 0.00 0.00 42.39 5.52
547 548 1.927174 CACTATACTGTGCAACGCCTC 59.073 52.381 0.00 0.00 42.39 4.70
548 549 1.548719 ACTATACTGTGCAACGCCTCA 59.451 47.619 0.00 0.00 42.39 3.86
549 550 1.927174 CTATACTGTGCAACGCCTCAC 59.073 52.381 0.00 0.00 42.39 3.51
550 551 0.034756 ATACTGTGCAACGCCTCACA 59.965 50.000 0.00 4.54 42.39 3.58
552 553 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
553 554 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
554 555 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
555 556 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
556 557 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
562 563 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
563 564 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
564 565 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
566 567 0.595053 CACAGATAGGCGCTACACGG 60.595 60.000 7.64 0.58 43.93 4.94
585 586 3.995669 CAACGTCGCACCCGTGTG 61.996 66.667 1.90 1.90 45.65 3.82
586 587 4.210093 AACGTCGCACCCGTGTGA 62.210 61.111 0.90 6.99 45.76 3.58
590 591 2.261361 TCGCACCCGTGTGATCAG 59.739 61.111 0.90 0.00 45.76 2.90
591 592 2.261361 CGCACCCGTGTGATCAGA 59.739 61.111 0.90 0.00 45.76 3.27
592 593 1.374125 CGCACCCGTGTGATCAGAA 60.374 57.895 0.90 0.00 45.76 3.02
593 594 0.948623 CGCACCCGTGTGATCAGAAA 60.949 55.000 0.90 0.00 45.76 2.52
594 595 1.234821 GCACCCGTGTGATCAGAAAA 58.765 50.000 0.90 0.00 45.76 2.29
595 596 1.812571 GCACCCGTGTGATCAGAAAAT 59.187 47.619 0.90 0.00 45.76 1.82
596 597 2.228822 GCACCCGTGTGATCAGAAAATT 59.771 45.455 0.90 0.00 45.76 1.82
597 598 3.438781 GCACCCGTGTGATCAGAAAATTA 59.561 43.478 0.90 0.00 45.76 1.40
598 599 4.671766 GCACCCGTGTGATCAGAAAATTAC 60.672 45.833 0.90 0.00 45.76 1.89
599 600 4.695455 CACCCGTGTGATCAGAAAATTACT 59.305 41.667 0.00 0.00 45.76 2.24
600 601 5.872617 CACCCGTGTGATCAGAAAATTACTA 59.127 40.000 0.00 0.00 45.76 1.82
601 602 6.370442 CACCCGTGTGATCAGAAAATTACTAA 59.630 38.462 0.00 0.00 45.76 2.24
602 603 6.594159 ACCCGTGTGATCAGAAAATTACTAAG 59.406 38.462 0.00 0.00 0.00 2.18
603 604 6.594159 CCCGTGTGATCAGAAAATTACTAAGT 59.406 38.462 0.00 0.00 0.00 2.24
604 605 7.201530 CCCGTGTGATCAGAAAATTACTAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
605 606 7.330946 CCGTGTGATCAGAAAATTACTAAGTCA 59.669 37.037 0.00 0.00 0.00 3.41
606 607 8.376203 CGTGTGATCAGAAAATTACTAAGTCAG 58.624 37.037 0.00 0.00 0.00 3.51
607 608 9.209175 GTGTGATCAGAAAATTACTAAGTCAGT 57.791 33.333 0.00 0.00 41.62 3.41
608 609 9.208022 TGTGATCAGAAAATTACTAAGTCAGTG 57.792 33.333 0.00 0.00 38.24 3.66
609 610 9.209175 GTGATCAGAAAATTACTAAGTCAGTGT 57.791 33.333 0.00 0.00 38.24 3.55
610 611 9.208022 TGATCAGAAAATTACTAAGTCAGTGTG 57.792 33.333 0.00 0.00 38.24 3.82
611 612 7.421530 TCAGAAAATTACTAAGTCAGTGTGC 57.578 36.000 0.00 0.00 38.24 4.57
612 613 6.989759 TCAGAAAATTACTAAGTCAGTGTGCA 59.010 34.615 0.00 0.00 38.24 4.57
613 614 7.171508 TCAGAAAATTACTAAGTCAGTGTGCAG 59.828 37.037 0.00 0.00 38.24 4.41
614 615 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
615 616 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
616 617 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
617 618 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
618 619 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
619 620 3.720193 GTCAGTGTGCAGCGCCTG 61.720 66.667 2.29 14.85 34.12 4.85
620 621 3.927548 TCAGTGTGCAGCGCCTGA 61.928 61.111 18.04 18.04 32.44 3.86
621 622 3.420606 CAGTGTGCAGCGCCTGAG 61.421 66.667 15.59 0.00 32.44 3.35
622 623 3.619767 AGTGTGCAGCGCCTGAGA 61.620 61.111 2.29 0.00 32.44 3.27
623 624 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
633 634 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
634 635 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
635 636 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
636 637 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
637 638 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
638 639 2.202810 GAGCTAGGCGCCACACTC 60.203 66.667 31.54 25.72 40.39 3.51
639 640 3.724914 GAGCTAGGCGCCACACTCC 62.725 68.421 31.54 10.29 40.39 3.85
640 641 4.840005 GCTAGGCGCCACACTCCC 62.840 72.222 31.54 5.31 0.00 4.30
641 642 3.390521 CTAGGCGCCACACTCCCA 61.391 66.667 31.54 1.47 0.00 4.37
642 643 3.376935 CTAGGCGCCACACTCCCAG 62.377 68.421 31.54 7.99 0.00 4.45
646 647 3.991051 CGCCACACTCCCAGTCGT 61.991 66.667 0.00 0.00 0.00 4.34
647 648 2.426023 GCCACACTCCCAGTCGTT 59.574 61.111 0.00 0.00 0.00 3.85
648 649 1.961277 GCCACACTCCCAGTCGTTG 60.961 63.158 0.00 0.00 0.00 4.10
649 650 1.961277 CCACACTCCCAGTCGTTGC 60.961 63.158 0.00 0.00 0.00 4.17
650 651 1.227527 CACACTCCCAGTCGTTGCA 60.228 57.895 0.00 0.00 0.00 4.08
651 652 1.227556 ACACTCCCAGTCGTTGCAC 60.228 57.895 0.00 0.00 0.00 4.57
652 653 1.069765 CACTCCCAGTCGTTGCACT 59.930 57.895 0.00 0.00 0.00 4.40
653 654 0.317160 CACTCCCAGTCGTTGCACTA 59.683 55.000 0.00 0.00 0.00 2.74
654 655 0.603569 ACTCCCAGTCGTTGCACTAG 59.396 55.000 0.00 0.00 0.00 2.57
655 656 0.603569 CTCCCAGTCGTTGCACTAGT 59.396 55.000 0.00 0.00 0.00 2.57
656 657 0.317160 TCCCAGTCGTTGCACTAGTG 59.683 55.000 18.93 18.93 0.00 2.74
666 667 2.262603 CACTAGTGCAGCGCCTGA 59.737 61.111 10.54 0.00 32.44 3.86
667 668 1.808799 CACTAGTGCAGCGCCTGAG 60.809 63.158 10.54 0.34 32.44 3.35
668 669 1.979155 ACTAGTGCAGCGCCTGAGA 60.979 57.895 2.29 0.00 32.44 3.27
669 670 1.226916 CTAGTGCAGCGCCTGAGAG 60.227 63.158 2.29 0.00 32.44 3.20
670 671 3.362399 TAGTGCAGCGCCTGAGAGC 62.362 63.158 2.29 0.00 39.42 4.09
679 680 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
680 681 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
681 682 3.764810 CTGAGAGCTAGGCGCCACG 62.765 68.421 31.54 19.97 40.39 4.94
682 683 4.577246 GAGAGCTAGGCGCCACGG 62.577 72.222 31.54 18.60 40.39 4.94
687 688 4.514577 CTAGGCGCCACGGGTCAG 62.515 72.222 31.54 9.46 0.00 3.51
698 699 2.746277 GGGTCAGCCGCGTGAAAT 60.746 61.111 4.92 0.00 34.97 2.17
699 700 1.448893 GGGTCAGCCGCGTGAAATA 60.449 57.895 4.92 0.00 34.97 1.40
700 701 1.429148 GGGTCAGCCGCGTGAAATAG 61.429 60.000 4.92 0.00 34.97 1.73
701 702 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
702 703 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
703 704 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
704 705 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
705 706 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
716 717 6.869315 TGAAATAGTTTCACGGACAATTCA 57.131 33.333 1.24 0.00 44.21 2.57
717 718 7.447374 TGAAATAGTTTCACGGACAATTCAT 57.553 32.000 1.24 0.00 44.21 2.57
718 719 7.881142 TGAAATAGTTTCACGGACAATTCATT 58.119 30.769 1.24 0.00 44.21 2.57
719 720 8.020819 TGAAATAGTTTCACGGACAATTCATTC 58.979 33.333 1.24 0.00 44.21 2.67
720 721 7.687941 AATAGTTTCACGGACAATTCATTCT 57.312 32.000 0.00 0.00 0.00 2.40
721 722 5.362556 AGTTTCACGGACAATTCATTCTG 57.637 39.130 0.00 0.00 0.00 3.02
722 723 4.821805 AGTTTCACGGACAATTCATTCTGT 59.178 37.500 0.00 0.00 0.00 3.41
723 724 4.747540 TTCACGGACAATTCATTCTGTG 57.252 40.909 11.58 11.58 46.45 3.66
727 728 5.964958 ACGGACAATTCATTCTGTGATTT 57.035 34.783 0.00 0.00 36.54 2.17
728 729 5.702865 ACGGACAATTCATTCTGTGATTTG 58.297 37.500 9.74 9.74 46.29 2.32
729 730 5.473162 ACGGACAATTCATTCTGTGATTTGA 59.527 36.000 15.45 0.00 44.88 2.69
730 731 6.151648 ACGGACAATTCATTCTGTGATTTGAT 59.848 34.615 15.45 4.60 44.88 2.57
731 732 7.031372 CGGACAATTCATTCTGTGATTTGATT 58.969 34.615 15.45 0.06 44.88 2.57
732 733 7.543172 CGGACAATTCATTCTGTGATTTGATTT 59.457 33.333 15.45 0.00 44.88 2.17
733 734 8.866956 GGACAATTCATTCTGTGATTTGATTTC 58.133 33.333 15.45 6.50 44.88 2.17
734 735 8.456904 ACAATTCATTCTGTGATTTGATTTCG 57.543 30.769 15.45 0.00 44.88 3.46
735 736 8.084073 ACAATTCATTCTGTGATTTGATTTCGT 58.916 29.630 15.45 0.00 44.88 3.85
736 737 8.581263 CAATTCATTCTGTGATTTGATTTCGTC 58.419 33.333 6.77 0.00 44.88 4.20
737 738 7.439157 TTCATTCTGTGATTTGATTTCGTCT 57.561 32.000 0.00 0.00 36.54 4.18
738 739 8.546597 TTCATTCTGTGATTTGATTTCGTCTA 57.453 30.769 0.00 0.00 36.54 2.59
739 740 8.722480 TCATTCTGTGATTTGATTTCGTCTAT 57.278 30.769 0.00 0.00 0.00 1.98
740 741 9.816354 TCATTCTGTGATTTGATTTCGTCTATA 57.184 29.630 0.00 0.00 0.00 1.31
742 743 8.648557 TTCTGTGATTTGATTTCGTCTATAGG 57.351 34.615 0.00 0.00 0.00 2.57
743 744 7.782049 TCTGTGATTTGATTTCGTCTATAGGT 58.218 34.615 0.00 0.00 0.00 3.08
744 745 8.258007 TCTGTGATTTGATTTCGTCTATAGGTT 58.742 33.333 0.00 0.00 0.00 3.50
745 746 9.529325 CTGTGATTTGATTTCGTCTATAGGTTA 57.471 33.333 0.00 0.00 0.00 2.85
746 747 9.878667 TGTGATTTGATTTCGTCTATAGGTTAA 57.121 29.630 0.00 0.00 0.00 2.01
790 791 1.960689 GCTGGTTGGCTGGTTTTCTTA 59.039 47.619 0.00 0.00 0.00 2.10
791 792 2.029918 GCTGGTTGGCTGGTTTTCTTAG 60.030 50.000 0.00 0.00 0.00 2.18
871 872 3.110178 GCCGTCGAACGTGGAAGG 61.110 66.667 14.69 14.69 40.58 3.46
875 876 1.002250 CGTCGAACGTGGAAGGAGTG 61.002 60.000 0.00 0.00 36.74 3.51
876 877 0.666577 GTCGAACGTGGAAGGAGTGG 60.667 60.000 0.00 0.00 0.00 4.00
877 878 2.027625 CGAACGTGGAAGGAGTGGC 61.028 63.158 0.00 0.00 0.00 5.01
878 879 1.671379 GAACGTGGAAGGAGTGGCC 60.671 63.158 0.00 0.00 0.00 5.36
907 908 0.037590 TAGGGGCAGTTCGTTGCATT 59.962 50.000 10.45 0.54 45.86 3.56
908 909 1.212751 GGGGCAGTTCGTTGCATTC 59.787 57.895 10.45 0.00 45.86 2.67
939 940 2.509964 CCACCCACCTCTATTTTAGCCT 59.490 50.000 0.00 0.00 0.00 4.58
1006 1010 1.300620 GCGTATACGGCCATGAGCA 60.301 57.895 25.55 0.00 46.50 4.26
1171 1175 2.742372 CCAGCCGTTCCACTTCCG 60.742 66.667 0.00 0.00 0.00 4.30
1294 1298 1.202952 CGGACCTCTGCCCTATACTCT 60.203 57.143 0.00 0.00 0.00 3.24
1657 1661 2.444706 CGGAGGGAGGCAGATGGA 60.445 66.667 0.00 0.00 0.00 3.41
1708 1712 3.964875 CCGTTGCAGGTGTGGTGC 61.965 66.667 0.00 0.00 41.59 5.01
1794 1798 8.731275 TTCTAGTACCCACATGATGTAAAATG 57.269 34.615 0.00 0.00 0.00 2.32
1795 1799 7.279615 TCTAGTACCCACATGATGTAAAATGG 58.720 38.462 0.00 0.00 0.00 3.16
1798 1802 4.654091 CCCACATGATGTAAAATGGGTC 57.346 45.455 9.30 0.00 41.67 4.46
1799 1803 4.022603 CCCACATGATGTAAAATGGGTCA 58.977 43.478 9.30 0.00 41.67 4.02
1800 1804 4.650588 CCCACATGATGTAAAATGGGTCAT 59.349 41.667 9.30 0.00 41.67 3.06
1801 1805 5.832595 CCCACATGATGTAAAATGGGTCATA 59.167 40.000 9.30 0.00 41.67 2.15
1802 1806 6.239008 CCCACATGATGTAAAATGGGTCATAC 60.239 42.308 9.30 0.00 41.67 2.39
1905 1909 2.368439 TGCAGGACAGAATTATGGTGC 58.632 47.619 14.09 14.09 0.00 5.01
1969 2942 3.726607 CATCTCAATCCAGCAGTCTACC 58.273 50.000 0.00 0.00 0.00 3.18
1973 2946 4.586421 TCTCAATCCAGCAGTCTACCTATG 59.414 45.833 0.00 0.00 0.00 2.23
1986 3377 6.929049 CAGTCTACCTATGCCATCGATAAAAA 59.071 38.462 0.00 0.00 0.00 1.94
1991 3382 7.206981 ACCTATGCCATCGATAAAAAGAATG 57.793 36.000 0.00 0.00 0.00 2.67
1992 3383 6.207417 ACCTATGCCATCGATAAAAAGAATGG 59.793 38.462 0.00 0.00 0.00 3.16
1998 3389 7.041167 TGCCATCGATAAAAAGAATGGTAGATG 60.041 37.037 0.00 0.00 33.62 2.90
2003 3394 9.534565 TCGATAAAAAGAATGGTAGATGAGAAG 57.465 33.333 0.00 0.00 0.00 2.85
2004 3395 8.768955 CGATAAAAAGAATGGTAGATGAGAAGG 58.231 37.037 0.00 0.00 0.00 3.46
2009 3400 5.471424 AGAATGGTAGATGAGAAGGATCCA 58.529 41.667 15.82 0.00 0.00 3.41
2012 3403 5.557576 TGGTAGATGAGAAGGATCCAATG 57.442 43.478 15.82 0.00 0.00 2.82
2016 3407 7.955750 TGGTAGATGAGAAGGATCCAATGTATA 59.044 37.037 15.82 0.00 0.00 1.47
2030 3421 5.872617 TCCAATGTATAGACACGAACAAAGG 59.127 40.000 0.00 0.00 38.76 3.11
2048 3439 2.415010 CGCTCCACGGAGATCCAG 59.585 66.667 17.47 0.00 44.53 3.86
2055 3446 0.036010 CACGGAGATCCAGCAAAGGT 60.036 55.000 0.00 0.00 35.14 3.50
2363 3763 0.614979 TCCCTCTTTCTCCCACTCCG 60.615 60.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.397420 TGATCAGCAAAGAAGGCAAACTA 58.603 39.130 0.00 0.00 0.00 2.24
2 3 3.225104 TGATCAGCAAAGAAGGCAAACT 58.775 40.909 0.00 0.00 0.00 2.66
3 4 3.648339 TGATCAGCAAAGAAGGCAAAC 57.352 42.857 0.00 0.00 0.00 2.93
5 6 3.119743 CGATTGATCAGCAAAGAAGGCAA 60.120 43.478 0.00 0.00 40.48 4.52
6 7 2.421073 CGATTGATCAGCAAAGAAGGCA 59.579 45.455 0.00 0.00 40.48 4.75
7 8 2.793933 GCGATTGATCAGCAAAGAAGGC 60.794 50.000 0.00 0.00 40.48 4.35
8 9 2.681848 AGCGATTGATCAGCAAAGAAGG 59.318 45.455 8.02 0.00 40.48 3.46
9 10 4.096311 CAAGCGATTGATCAGCAAAGAAG 58.904 43.478 7.87 0.00 40.48 2.85
10 11 3.503363 ACAAGCGATTGATCAGCAAAGAA 59.497 39.130 21.96 0.00 40.48 2.52
11 12 3.076621 ACAAGCGATTGATCAGCAAAGA 58.923 40.909 21.96 0.00 40.48 2.52
12 13 3.120095 TCACAAGCGATTGATCAGCAAAG 60.120 43.478 21.96 0.00 40.48 2.77
13 14 2.813172 TCACAAGCGATTGATCAGCAAA 59.187 40.909 21.96 0.00 40.48 3.68
14 15 2.425539 TCACAAGCGATTGATCAGCAA 58.574 42.857 21.96 0.00 41.53 3.91
15 16 2.097680 TCACAAGCGATTGATCAGCA 57.902 45.000 21.96 0.00 0.00 4.41
16 17 2.417933 ACTTCACAAGCGATTGATCAGC 59.582 45.455 21.96 0.00 0.00 4.26
17 18 4.083643 ACAACTTCACAAGCGATTGATCAG 60.084 41.667 21.96 13.70 0.00 2.90
18 19 3.814842 ACAACTTCACAAGCGATTGATCA 59.185 39.130 21.96 0.00 0.00 2.92
19 20 4.083855 TCACAACTTCACAAGCGATTGATC 60.084 41.667 21.96 0.00 0.00 2.92
20 21 3.814842 TCACAACTTCACAAGCGATTGAT 59.185 39.130 21.96 1.17 0.00 2.57
21 22 3.202097 TCACAACTTCACAAGCGATTGA 58.798 40.909 21.96 0.00 0.00 2.57
22 23 3.607422 TCACAACTTCACAAGCGATTG 57.393 42.857 12.67 12.67 0.00 2.67
23 24 3.610114 GCATCACAACTTCACAAGCGATT 60.610 43.478 0.00 0.00 0.00 3.34
24 25 2.095567 GCATCACAACTTCACAAGCGAT 60.096 45.455 0.00 0.00 0.00 4.58
25 26 1.264020 GCATCACAACTTCACAAGCGA 59.736 47.619 0.00 0.00 0.00 4.93
26 27 1.678360 GCATCACAACTTCACAAGCG 58.322 50.000 0.00 0.00 0.00 4.68
27 28 1.264020 TCGCATCACAACTTCACAAGC 59.736 47.619 0.00 0.00 0.00 4.01
28 29 2.660094 CGTCGCATCACAACTTCACAAG 60.660 50.000 0.00 0.00 0.00 3.16
29 30 1.260297 CGTCGCATCACAACTTCACAA 59.740 47.619 0.00 0.00 0.00 3.33
30 31 0.858583 CGTCGCATCACAACTTCACA 59.141 50.000 0.00 0.00 0.00 3.58
31 32 0.163788 CCGTCGCATCACAACTTCAC 59.836 55.000 0.00 0.00 0.00 3.18
32 33 0.948623 CCCGTCGCATCACAACTTCA 60.949 55.000 0.00 0.00 0.00 3.02
33 34 1.635663 CCCCGTCGCATCACAACTTC 61.636 60.000 0.00 0.00 0.00 3.01
34 35 1.671054 CCCCGTCGCATCACAACTT 60.671 57.895 0.00 0.00 0.00 2.66
35 36 2.047274 CCCCGTCGCATCACAACT 60.047 61.111 0.00 0.00 0.00 3.16
36 37 1.231958 TTTCCCCGTCGCATCACAAC 61.232 55.000 0.00 0.00 0.00 3.32
37 38 0.322098 ATTTCCCCGTCGCATCACAA 60.322 50.000 0.00 0.00 0.00 3.33
38 39 0.742990 GATTTCCCCGTCGCATCACA 60.743 55.000 0.00 0.00 0.00 3.58
39 40 1.762222 CGATTTCCCCGTCGCATCAC 61.762 60.000 0.00 0.00 0.00 3.06
40 41 1.520564 CGATTTCCCCGTCGCATCA 60.521 57.895 0.00 0.00 0.00 3.07
41 42 0.600255 ATCGATTTCCCCGTCGCATC 60.600 55.000 0.00 0.00 37.74 3.91
42 43 0.600255 GATCGATTTCCCCGTCGCAT 60.600 55.000 0.00 0.00 37.74 4.73
43 44 1.227147 GATCGATTTCCCCGTCGCA 60.227 57.895 0.00 0.00 37.74 5.10
44 45 1.067582 AGATCGATTTCCCCGTCGC 59.932 57.895 0.00 0.00 37.74 5.19
45 46 0.597637 CCAGATCGATTTCCCCGTCG 60.598 60.000 0.00 0.00 39.11 5.12
46 47 0.249911 CCCAGATCGATTTCCCCGTC 60.250 60.000 0.00 0.00 0.00 4.79
47 48 0.689745 TCCCAGATCGATTTCCCCGT 60.690 55.000 0.00 0.00 0.00 5.28
48 49 0.687354 ATCCCAGATCGATTTCCCCG 59.313 55.000 0.00 0.00 0.00 5.73
49 50 2.508526 CAATCCCAGATCGATTTCCCC 58.491 52.381 0.00 0.00 0.00 4.81
50 51 1.882623 GCAATCCCAGATCGATTTCCC 59.117 52.381 0.00 0.00 0.00 3.97
51 52 2.575532 TGCAATCCCAGATCGATTTCC 58.424 47.619 0.00 0.00 0.00 3.13
52 53 4.037208 ACAATGCAATCCCAGATCGATTTC 59.963 41.667 0.00 0.00 0.00 2.17
53 54 3.956199 ACAATGCAATCCCAGATCGATTT 59.044 39.130 0.00 0.00 0.00 2.17
54 55 3.317149 CACAATGCAATCCCAGATCGATT 59.683 43.478 0.00 0.00 0.00 3.34
55 56 2.882761 CACAATGCAATCCCAGATCGAT 59.117 45.455 0.00 0.00 0.00 3.59
56 57 2.291365 CACAATGCAATCCCAGATCGA 58.709 47.619 0.00 0.00 0.00 3.59
57 58 1.268896 GCACAATGCAATCCCAGATCG 60.269 52.381 0.00 0.00 44.26 3.69
58 59 1.268896 CGCACAATGCAATCCCAGATC 60.269 52.381 0.00 0.00 45.36 2.75
59 60 0.742505 CGCACAATGCAATCCCAGAT 59.257 50.000 0.00 0.00 45.36 2.90
60 61 1.314534 CCGCACAATGCAATCCCAGA 61.315 55.000 0.00 0.00 45.36 3.86
61 62 1.140161 CCGCACAATGCAATCCCAG 59.860 57.895 0.00 0.00 45.36 4.45
62 63 0.322906 TACCGCACAATGCAATCCCA 60.323 50.000 0.00 0.00 45.36 4.37
63 64 1.032014 ATACCGCACAATGCAATCCC 58.968 50.000 0.00 0.00 45.36 3.85
64 65 1.405105 ACATACCGCACAATGCAATCC 59.595 47.619 0.00 0.00 45.36 3.01
65 66 2.849880 ACATACCGCACAATGCAATC 57.150 45.000 0.00 0.00 45.36 2.67
66 67 7.864108 ATATATACATACCGCACAATGCAAT 57.136 32.000 0.00 0.00 45.36 3.56
67 68 8.254508 TCTATATATACATACCGCACAATGCAA 58.745 33.333 0.00 0.00 45.36 4.08
68 69 7.777095 TCTATATATACATACCGCACAATGCA 58.223 34.615 1.20 0.00 45.36 3.96
69 70 8.703336 CATCTATATATACATACCGCACAATGC 58.297 37.037 0.00 0.00 40.69 3.56
70 71 8.703336 GCATCTATATATACATACCGCACAATG 58.297 37.037 0.00 0.00 0.00 2.82
71 72 8.421002 TGCATCTATATATACATACCGCACAAT 58.579 33.333 0.00 0.00 0.00 2.71
72 73 7.777095 TGCATCTATATATACATACCGCACAA 58.223 34.615 0.00 0.00 0.00 3.33
73 74 7.341445 TGCATCTATATATACATACCGCACA 57.659 36.000 0.00 0.00 0.00 4.57
74 75 6.863645 CCTGCATCTATATATACATACCGCAC 59.136 42.308 0.00 0.00 0.00 5.34
75 76 6.516693 GCCTGCATCTATATATACATACCGCA 60.517 42.308 0.00 0.00 0.00 5.69
76 77 5.864474 GCCTGCATCTATATATACATACCGC 59.136 44.000 0.00 0.00 0.00 5.68
77 78 6.863645 GTGCCTGCATCTATATATACATACCG 59.136 42.308 0.00 0.00 0.00 4.02
78 79 6.863645 CGTGCCTGCATCTATATATACATACC 59.136 42.308 0.00 0.00 0.00 2.73
79 80 6.363626 GCGTGCCTGCATCTATATATACATAC 59.636 42.308 0.00 0.00 34.15 2.39
80 81 6.447162 GCGTGCCTGCATCTATATATACATA 58.553 40.000 0.00 0.00 34.15 2.29
81 82 5.292765 GCGTGCCTGCATCTATATATACAT 58.707 41.667 0.00 0.00 34.15 2.29
82 83 4.682787 GCGTGCCTGCATCTATATATACA 58.317 43.478 0.00 0.00 34.15 2.29
83 84 3.731216 CGCGTGCCTGCATCTATATATAC 59.269 47.826 0.00 0.00 34.15 1.47
84 85 3.243401 CCGCGTGCCTGCATCTATATATA 60.243 47.826 4.92 0.00 34.15 0.86
85 86 2.481969 CCGCGTGCCTGCATCTATATAT 60.482 50.000 4.92 0.00 34.15 0.86
86 87 1.135112 CCGCGTGCCTGCATCTATATA 60.135 52.381 4.92 0.00 34.15 0.86
87 88 0.390340 CCGCGTGCCTGCATCTATAT 60.390 55.000 4.92 0.00 34.15 0.86
88 89 1.006220 CCGCGTGCCTGCATCTATA 60.006 57.895 4.92 0.00 34.15 1.31
89 90 2.280389 CCGCGTGCCTGCATCTAT 60.280 61.111 4.92 0.00 34.15 1.98
90 91 3.430565 CTCCGCGTGCCTGCATCTA 62.431 63.158 4.92 0.00 34.15 1.98
91 92 4.827087 CTCCGCGTGCCTGCATCT 62.827 66.667 4.92 0.00 34.15 2.90
93 94 4.704833 AACTCCGCGTGCCTGCAT 62.705 61.111 4.92 0.00 34.15 3.96
98 99 4.778143 ATCCCAACTCCGCGTGCC 62.778 66.667 4.92 0.00 0.00 5.01
99 100 2.746277 AATCCCAACTCCGCGTGC 60.746 61.111 4.92 0.00 0.00 5.34
100 101 2.398554 CCAATCCCAACTCCGCGTG 61.399 63.158 4.92 0.00 0.00 5.34
101 102 2.046314 CCAATCCCAACTCCGCGT 60.046 61.111 4.92 0.00 0.00 6.01
102 103 2.824041 CCCAATCCCAACTCCGCG 60.824 66.667 0.00 0.00 0.00 6.46
103 104 1.749258 GTCCCAATCCCAACTCCGC 60.749 63.158 0.00 0.00 0.00 5.54
104 105 1.449601 CGTCCCAATCCCAACTCCG 60.450 63.158 0.00 0.00 0.00 4.63
105 106 1.749258 GCGTCCCAATCCCAACTCC 60.749 63.158 0.00 0.00 0.00 3.85
106 107 2.106683 CGCGTCCCAATCCCAACTC 61.107 63.158 0.00 0.00 0.00 3.01
107 108 2.046314 CGCGTCCCAATCCCAACT 60.046 61.111 0.00 0.00 0.00 3.16
108 109 2.359478 ACGCGTCCCAATCCCAAC 60.359 61.111 5.58 0.00 0.00 3.77
109 110 2.046700 GACGCGTCCCAATCCCAA 60.047 61.111 28.61 0.00 0.00 4.12
110 111 4.444838 CGACGCGTCCCAATCCCA 62.445 66.667 31.84 0.00 0.00 4.37
112 113 3.945304 AACCGACGCGTCCCAATCC 62.945 63.158 31.84 7.76 0.00 3.01
113 114 2.433664 AACCGACGCGTCCCAATC 60.434 61.111 31.84 8.55 0.00 2.67
114 115 2.433664 GAACCGACGCGTCCCAAT 60.434 61.111 31.84 16.51 0.00 3.16
115 116 3.154584 AAGAACCGACGCGTCCCAA 62.155 57.895 31.84 0.00 0.00 4.12
116 117 3.608662 AAGAACCGACGCGTCCCA 61.609 61.111 31.84 0.00 0.00 4.37
117 118 3.110178 CAAGAACCGACGCGTCCC 61.110 66.667 31.84 18.42 0.00 4.46
118 119 2.807631 TAGCAAGAACCGACGCGTCC 62.808 60.000 31.84 18.45 0.00 4.79
119 120 1.005294 TTAGCAAGAACCGACGCGTC 61.005 55.000 28.96 28.96 0.00 5.19
120 121 0.389426 ATTAGCAAGAACCGACGCGT 60.389 50.000 13.85 13.85 0.00 6.01
121 122 0.297820 GATTAGCAAGAACCGACGCG 59.702 55.000 3.53 3.53 0.00 6.01
122 123 0.651031 GGATTAGCAAGAACCGACGC 59.349 55.000 0.00 0.00 0.00 5.19
123 124 0.921347 CGGATTAGCAAGAACCGACG 59.079 55.000 0.00 0.00 45.31 5.12
124 125 1.287425 CCGGATTAGCAAGAACCGAC 58.713 55.000 0.00 0.00 45.31 4.79
125 126 0.461339 GCCGGATTAGCAAGAACCGA 60.461 55.000 5.05 0.00 45.31 4.69
126 127 1.762222 CGCCGGATTAGCAAGAACCG 61.762 60.000 5.05 0.00 42.67 4.44
127 128 2.014594 CGCCGGATTAGCAAGAACC 58.985 57.895 5.05 0.00 0.00 3.62
128 129 1.352056 GCGCCGGATTAGCAAGAAC 59.648 57.895 5.05 0.00 0.00 3.01
129 130 1.817941 GGCGCCGGATTAGCAAGAA 60.818 57.895 12.58 0.00 0.00 2.52
130 131 2.203015 GGCGCCGGATTAGCAAGA 60.203 61.111 12.58 0.00 0.00 3.02
131 132 3.640000 CGGCGCCGGATTAGCAAG 61.640 66.667 40.50 8.79 35.56 4.01
157 158 3.261951 CACAGGGCCGAATACGCG 61.262 66.667 3.53 3.53 38.29 6.01
158 159 3.573491 GCACAGGGCCGAATACGC 61.573 66.667 0.00 0.00 38.29 4.42
189 190 3.261951 CACAGGGCCGAATACGCG 61.262 66.667 3.53 3.53 38.29 6.01
190 191 3.573491 GCACAGGGCCGAATACGC 61.573 66.667 0.00 0.00 38.29 4.42
225 226 1.807573 CACTCCGCGCTTTCTCCTC 60.808 63.158 5.56 0.00 0.00 3.71
240 241 0.103208 GAACCGATCGAGATGGCACT 59.897 55.000 18.66 0.00 0.00 4.40
256 257 4.565564 GCAGATTGATTCCAAATGCAGAAC 59.434 41.667 11.36 0.00 43.12 3.01
270 271 0.465097 CTGGGCCGAAGCAGATTGAT 60.465 55.000 0.00 0.00 42.56 2.57
282 283 3.080121 AGAGAGGAAGCTGGGCCG 61.080 66.667 0.00 0.00 0.00 6.13
288 289 0.389166 CGAAACGCAGAGAGGAAGCT 60.389 55.000 0.00 0.00 0.00 3.74
289 290 0.388649 TCGAAACGCAGAGAGGAAGC 60.389 55.000 0.00 0.00 0.00 3.86
342 343 2.927553 AAATGATCAGAAACTGCGCC 57.072 45.000 4.18 0.00 0.00 6.53
410 411 2.708386 TTTGTCAAATTTACCGCCGG 57.292 45.000 0.00 0.00 0.00 6.13
411 412 4.681942 TCAAATTTGTCAAATTTACCGCCG 59.318 37.500 27.66 17.84 46.34 6.46
412 413 5.107259 GGTCAAATTTGTCAAATTTACCGCC 60.107 40.000 27.66 22.39 46.34 6.13
413 414 5.694458 AGGTCAAATTTGTCAAATTTACCGC 59.306 36.000 28.99 21.63 46.34 5.68
414 415 8.980143 ATAGGTCAAATTTGTCAAATTTACCG 57.020 30.769 28.99 21.68 46.34 4.02
419 420 9.226606 TCGTCTATAGGTCAAATTTGTCAAATT 57.773 29.630 16.26 16.26 42.62 1.82
420 421 8.786826 TCGTCTATAGGTCAAATTTGTCAAAT 57.213 30.769 17.47 4.91 0.00 2.32
421 422 8.610248 TTCGTCTATAGGTCAAATTTGTCAAA 57.390 30.769 17.47 0.00 0.00 2.69
422 423 8.610248 TTTCGTCTATAGGTCAAATTTGTCAA 57.390 30.769 17.47 5.31 0.00 3.18
423 424 8.786826 ATTTCGTCTATAGGTCAAATTTGTCA 57.213 30.769 17.47 0.00 0.00 3.58
424 425 8.879759 TGATTTCGTCTATAGGTCAAATTTGTC 58.120 33.333 17.47 12.07 0.00 3.18
425 426 8.786826 TGATTTCGTCTATAGGTCAAATTTGT 57.213 30.769 17.47 1.67 0.00 2.83
429 430 9.613428 TGATTTGATTTCGTCTATAGGTCAAAT 57.387 29.630 17.06 17.06 43.48 2.32
430 431 8.879759 GTGATTTGATTTCGTCTATAGGTCAAA 58.120 33.333 0.00 7.93 38.14 2.69
431 432 8.038351 TGTGATTTGATTTCGTCTATAGGTCAA 58.962 33.333 0.00 0.00 0.00 3.18
432 433 7.552459 TGTGATTTGATTTCGTCTATAGGTCA 58.448 34.615 0.00 0.00 0.00 4.02
433 434 7.921214 TCTGTGATTTGATTTCGTCTATAGGTC 59.079 37.037 0.00 0.00 0.00 3.85
434 435 7.782049 TCTGTGATTTGATTTCGTCTATAGGT 58.218 34.615 0.00 0.00 0.00 3.08
435 436 8.648557 TTCTGTGATTTGATTTCGTCTATAGG 57.351 34.615 0.00 0.00 0.00 2.57
437 438 9.816354 TCATTCTGTGATTTGATTTCGTCTATA 57.184 29.630 0.00 0.00 0.00 1.31
438 439 8.722480 TCATTCTGTGATTTGATTTCGTCTAT 57.278 30.769 0.00 0.00 0.00 1.98
439 440 8.443160 GTTCATTCTGTGATTTGATTTCGTCTA 58.557 33.333 0.00 0.00 36.54 2.59
440 441 7.173907 AGTTCATTCTGTGATTTGATTTCGTCT 59.826 33.333 0.00 0.00 36.54 4.18
441 442 7.301054 AGTTCATTCTGTGATTTGATTTCGTC 58.699 34.615 0.00 0.00 36.54 4.20
442 443 7.206981 AGTTCATTCTGTGATTTGATTTCGT 57.793 32.000 0.00 0.00 36.54 3.85
443 444 9.778993 AATAGTTCATTCTGTGATTTGATTTCG 57.221 29.630 0.00 0.00 36.54 3.46
472 473 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
473 474 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
474 475 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
475 476 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
476 477 0.246635 AGTCAGCCGCGTGAAATAGT 59.753 50.000 4.92 0.00 0.00 2.12
477 478 1.359848 AAGTCAGCCGCGTGAAATAG 58.640 50.000 4.92 0.00 0.00 1.73
478 479 1.803334 AAAGTCAGCCGCGTGAAATA 58.197 45.000 4.92 0.00 0.00 1.40
479 480 0.951558 AAAAGTCAGCCGCGTGAAAT 59.048 45.000 4.92 0.00 0.00 2.17
480 481 0.736053 AAAAAGTCAGCCGCGTGAAA 59.264 45.000 4.92 0.00 0.00 2.69
481 482 2.399856 AAAAAGTCAGCCGCGTGAA 58.600 47.368 4.92 0.00 0.00 3.18
482 483 4.134623 AAAAAGTCAGCCGCGTGA 57.865 50.000 4.92 0.00 0.00 4.35
496 497 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
497 498 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
498 499 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
499 500 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
500 501 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
501 502 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
502 503 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
503 504 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
504 505 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
512 513 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
513 514 2.167398 ATAGTGTGGCGCCTTCGTGT 62.167 55.000 29.70 9.85 38.14 4.49
514 515 0.179121 TATAGTGTGGCGCCTTCGTG 60.179 55.000 29.70 0.00 38.14 4.35
515 516 0.179119 GTATAGTGTGGCGCCTTCGT 60.179 55.000 29.70 12.53 38.14 3.85
516 517 0.102481 AGTATAGTGTGGCGCCTTCG 59.898 55.000 29.70 0.00 39.07 3.79
517 518 1.134788 ACAGTATAGTGTGGCGCCTTC 60.135 52.381 29.70 20.58 0.00 3.46
518 519 0.902531 ACAGTATAGTGTGGCGCCTT 59.097 50.000 29.70 13.03 0.00 4.35
519 520 0.175760 CACAGTATAGTGTGGCGCCT 59.824 55.000 29.70 9.99 43.56 5.52
520 521 1.429148 GCACAGTATAGTGTGGCGCC 61.429 60.000 32.04 22.73 46.73 6.53
521 522 0.739462 TGCACAGTATAGTGTGGCGC 60.739 55.000 32.04 22.39 46.73 6.53
522 523 1.393539 GTTGCACAGTATAGTGTGGCG 59.606 52.381 32.04 15.02 46.73 5.69
523 524 1.393539 CGTTGCACAGTATAGTGTGGC 59.606 52.381 32.04 25.41 46.73 5.01
524 525 1.393539 GCGTTGCACAGTATAGTGTGG 59.606 52.381 32.04 20.63 46.73 4.17
526 527 1.275291 AGGCGTTGCACAGTATAGTGT 59.725 47.619 7.42 7.42 41.52 3.55
527 528 1.927174 GAGGCGTTGCACAGTATAGTG 59.073 52.381 6.00 6.00 42.37 2.74
528 529 1.548719 TGAGGCGTTGCACAGTATAGT 59.451 47.619 0.00 0.00 0.00 2.12
529 530 1.927174 GTGAGGCGTTGCACAGTATAG 59.073 52.381 0.00 0.00 35.19 1.31
530 531 1.273886 TGTGAGGCGTTGCACAGTATA 59.726 47.619 0.00 0.00 39.86 1.47
531 532 0.034756 TGTGAGGCGTTGCACAGTAT 59.965 50.000 0.00 0.00 39.86 2.12
532 533 1.443828 TGTGAGGCGTTGCACAGTA 59.556 52.632 0.00 0.00 39.86 2.74
533 534 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
535 536 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
536 537 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
537 538 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
538 539 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
544 545 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
545 546 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
546 547 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
547 548 0.595053 CCGTGTAGCGCCTATCTGTG 60.595 60.000 2.29 0.00 39.71 3.66
548 549 1.734137 CCGTGTAGCGCCTATCTGT 59.266 57.895 2.29 0.00 39.71 3.41
549 550 1.661821 GCCGTGTAGCGCCTATCTG 60.662 63.158 2.29 0.00 39.71 2.90
550 551 2.728817 GCCGTGTAGCGCCTATCT 59.271 61.111 2.29 0.00 39.71 1.98
551 552 2.355956 GGCCGTGTAGCGCCTATC 60.356 66.667 2.29 0.00 39.71 2.08
552 553 2.727392 TTGGCCGTGTAGCGCCTAT 61.727 57.895 2.29 0.00 39.71 2.57
553 554 3.383681 TTGGCCGTGTAGCGCCTA 61.384 61.111 2.29 0.00 39.71 3.93
568 569 3.995669 CACACGGGTGCGACGTTG 61.996 66.667 4.08 0.00 43.58 4.10
569 570 3.509137 ATCACACGGGTGCGACGTT 62.509 57.895 14.50 0.00 44.87 3.99
570 571 3.909258 GATCACACGGGTGCGACGT 62.909 63.158 14.50 0.00 44.87 4.34
571 572 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
572 573 2.048597 TGATCACACGGGTGCGAC 60.049 61.111 14.50 7.33 44.87 5.19
573 574 1.811645 TTCTGATCACACGGGTGCGA 61.812 55.000 14.50 3.83 44.87 5.10
574 575 0.948623 TTTCTGATCACACGGGTGCG 60.949 55.000 14.50 1.20 44.87 5.34
575 576 1.234821 TTTTCTGATCACACGGGTGC 58.765 50.000 14.50 0.00 44.87 5.01
576 577 4.695455 AGTAATTTTCTGATCACACGGGTG 59.305 41.667 12.84 12.84 46.66 4.61
577 578 4.906618 AGTAATTTTCTGATCACACGGGT 58.093 39.130 0.00 0.00 0.00 5.28
578 579 6.594159 ACTTAGTAATTTTCTGATCACACGGG 59.406 38.462 0.00 0.00 0.00 5.28
579 580 7.330946 TGACTTAGTAATTTTCTGATCACACGG 59.669 37.037 0.00 0.00 0.00 4.94
580 581 8.239681 TGACTTAGTAATTTTCTGATCACACG 57.760 34.615 0.00 0.00 0.00 4.49
581 582 9.209175 ACTGACTTAGTAATTTTCTGATCACAC 57.791 33.333 0.00 0.00 38.04 3.82
582 583 9.208022 CACTGACTTAGTAATTTTCTGATCACA 57.792 33.333 0.00 0.00 37.60 3.58
583 584 9.209175 ACACTGACTTAGTAATTTTCTGATCAC 57.791 33.333 0.00 0.00 37.60 3.06
584 585 9.208022 CACACTGACTTAGTAATTTTCTGATCA 57.792 33.333 0.00 0.00 37.60 2.92
585 586 8.171840 GCACACTGACTTAGTAATTTTCTGATC 58.828 37.037 0.00 0.00 37.60 2.92
586 587 7.661437 TGCACACTGACTTAGTAATTTTCTGAT 59.339 33.333 0.00 0.00 37.60 2.90
587 588 6.989759 TGCACACTGACTTAGTAATTTTCTGA 59.010 34.615 0.00 0.00 37.60 3.27
588 589 7.189693 TGCACACTGACTTAGTAATTTTCTG 57.810 36.000 0.00 0.00 37.60 3.02
589 590 6.073003 GCTGCACACTGACTTAGTAATTTTCT 60.073 38.462 0.00 0.00 37.60 2.52
590 591 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
591 592 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
592 593 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
593 594 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
594 595 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
595 596 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
596 597 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
597 598 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
598 599 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
599 600 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
600 601 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
601 602 3.933722 AGGCGCTGCACACTGACT 61.934 61.111 7.64 0.00 0.00 3.41
602 603 3.720193 CAGGCGCTGCACACTGAC 61.720 66.667 7.64 0.00 32.86 3.51
603 604 3.871248 CTCAGGCGCTGCACACTGA 62.871 63.158 7.64 9.54 37.61 3.41
604 605 3.420606 CTCAGGCGCTGCACACTG 61.421 66.667 7.64 4.89 0.00 3.66
605 606 3.586461 CTCTCAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
606 607 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
608 609 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
609 610 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
610 611 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
611 612 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
624 625 3.376935 CTGGGAGTGTGGCGCCTAG 62.377 68.421 29.70 8.82 39.03 3.02
625 626 3.390521 CTGGGAGTGTGGCGCCTA 61.391 66.667 29.70 14.39 37.22 3.93
629 630 3.515316 AACGACTGGGAGTGTGGCG 62.515 63.158 0.00 0.00 0.00 5.69
630 631 1.961277 CAACGACTGGGAGTGTGGC 60.961 63.158 0.00 0.00 0.00 5.01
631 632 1.961277 GCAACGACTGGGAGTGTGG 60.961 63.158 0.00 0.00 0.00 4.17
632 633 1.227527 TGCAACGACTGGGAGTGTG 60.228 57.895 0.00 0.00 0.00 3.82
633 634 1.227556 GTGCAACGACTGGGAGTGT 60.228 57.895 0.00 0.00 0.00 3.55
634 635 0.317160 TAGTGCAACGACTGGGAGTG 59.683 55.000 0.00 0.00 45.86 3.51
635 636 0.603569 CTAGTGCAACGACTGGGAGT 59.396 55.000 0.00 0.00 45.86 3.85
636 637 0.603569 ACTAGTGCAACGACTGGGAG 59.396 55.000 0.00 0.00 45.86 4.30
637 638 0.317160 CACTAGTGCAACGACTGGGA 59.683 55.000 10.54 0.00 45.86 4.37
638 639 2.827604 CACTAGTGCAACGACTGGG 58.172 57.895 10.54 0.00 45.86 4.45
649 650 1.808799 CTCAGGCGCTGCACTAGTG 60.809 63.158 18.93 18.93 39.95 2.74
650 651 1.943116 CTCTCAGGCGCTGCACTAGT 61.943 60.000 7.64 0.00 0.00 2.57
651 652 1.226916 CTCTCAGGCGCTGCACTAG 60.227 63.158 7.64 0.00 0.00 2.57
652 653 2.888111 CTCTCAGGCGCTGCACTA 59.112 61.111 7.64 0.00 0.00 2.74
653 654 4.756458 GCTCTCAGGCGCTGCACT 62.756 66.667 7.64 0.00 0.00 4.40
654 655 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
655 656 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
656 657 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
657 658 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
670 671 4.514577 CTGACCCGTGGCGCCTAG 62.515 72.222 29.70 20.71 0.00 3.02
681 682 1.429148 CTATTTCACGCGGCTGACCC 61.429 60.000 12.47 0.00 0.00 4.46
682 683 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
683 684 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
684 685 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
685 686 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
686 687 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
693 694 6.869315 TGAATTGTCCGTGAAACTATTTCA 57.131 33.333 0.00 0.00 46.68 2.69
694 695 8.237267 AGAATGAATTGTCCGTGAAACTATTTC 58.763 33.333 0.00 0.00 40.08 2.17
695 696 8.023128 CAGAATGAATTGTCCGTGAAACTATTT 58.977 33.333 0.00 0.00 39.69 1.40
696 697 7.174946 ACAGAATGAATTGTCCGTGAAACTATT 59.825 33.333 0.00 0.00 39.69 1.73
697 698 6.655003 ACAGAATGAATTGTCCGTGAAACTAT 59.345 34.615 0.00 0.00 39.69 2.12
698 699 5.995282 ACAGAATGAATTGTCCGTGAAACTA 59.005 36.000 0.00 0.00 39.69 2.24
699 700 4.821805 ACAGAATGAATTGTCCGTGAAACT 59.178 37.500 0.00 0.00 39.69 2.66
700 701 4.911610 CACAGAATGAATTGTCCGTGAAAC 59.088 41.667 0.00 0.00 39.69 2.78
701 702 4.819088 TCACAGAATGAATTGTCCGTGAAA 59.181 37.500 0.00 0.00 39.69 2.69
702 703 4.384940 TCACAGAATGAATTGTCCGTGAA 58.615 39.130 0.00 0.00 39.69 3.18
703 704 4.001618 TCACAGAATGAATTGTCCGTGA 57.998 40.909 0.00 0.00 39.69 4.35
704 705 4.952262 ATCACAGAATGAATTGTCCGTG 57.048 40.909 0.00 0.00 41.93 4.94
705 706 5.473162 TCAAATCACAGAATGAATTGTCCGT 59.527 36.000 4.99 0.00 45.11 4.69
706 707 5.941733 TCAAATCACAGAATGAATTGTCCG 58.058 37.500 4.99 0.00 45.11 4.79
707 708 8.767478 AAATCAAATCACAGAATGAATTGTCC 57.233 30.769 4.99 0.00 45.11 4.02
708 709 8.581263 CGAAATCAAATCACAGAATGAATTGTC 58.419 33.333 4.99 0.00 45.11 3.18
709 710 8.084073 ACGAAATCAAATCACAGAATGAATTGT 58.916 29.630 4.99 0.00 45.11 2.71
710 711 8.456904 ACGAAATCAAATCACAGAATGAATTG 57.543 30.769 0.00 0.00 45.90 2.32
711 712 8.517878 AGACGAAATCAAATCACAGAATGAATT 58.482 29.630 0.00 0.00 41.93 2.17
712 713 8.048534 AGACGAAATCAAATCACAGAATGAAT 57.951 30.769 0.00 0.00 41.93 2.57
713 714 7.439157 AGACGAAATCAAATCACAGAATGAA 57.561 32.000 0.00 0.00 41.93 2.57
714 715 8.722480 ATAGACGAAATCAAATCACAGAATGA 57.278 30.769 0.00 0.00 43.13 2.57
716 717 9.265901 CCTATAGACGAAATCAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
717 718 8.258007 ACCTATAGACGAAATCAAATCACAGAA 58.742 33.333 0.00 0.00 0.00 3.02
718 719 7.782049 ACCTATAGACGAAATCAAATCACAGA 58.218 34.615 0.00 0.00 0.00 3.41
719 720 8.425577 AACCTATAGACGAAATCAAATCACAG 57.574 34.615 0.00 0.00 0.00 3.66
720 721 9.878667 TTAACCTATAGACGAAATCAAATCACA 57.121 29.630 0.00 0.00 0.00 3.58
738 739 9.218440 CAGGCAAATTTGACAAATTTAACCTAT 57.782 29.630 33.54 22.68 46.34 2.57
739 740 8.424918 TCAGGCAAATTTGACAAATTTAACCTA 58.575 29.630 33.54 25.51 46.34 3.08
740 741 7.278875 TCAGGCAAATTTGACAAATTTAACCT 58.721 30.769 31.38 31.38 46.34 3.50
741 742 7.489574 TCAGGCAAATTTGACAAATTTAACC 57.510 32.000 29.34 29.35 46.34 2.85
742 743 7.855409 GGTTCAGGCAAATTTGACAAATTTAAC 59.145 33.333 29.34 26.65 46.34 2.01
743 744 7.254590 CGGTTCAGGCAAATTTGACAAATTTAA 60.255 33.333 29.34 20.16 46.34 1.52
744 745 6.201806 CGGTTCAGGCAAATTTGACAAATTTA 59.798 34.615 29.34 16.48 46.34 1.40
746 747 4.511082 CGGTTCAGGCAAATTTGACAAATT 59.489 37.500 25.59 18.41 42.62 1.82
747 748 4.057432 CGGTTCAGGCAAATTTGACAAAT 58.943 39.130 25.59 7.62 39.18 2.32
748 749 3.452474 CGGTTCAGGCAAATTTGACAAA 58.548 40.909 25.59 15.94 39.18 2.83
749 750 2.223923 CCGGTTCAGGCAAATTTGACAA 60.224 45.455 25.59 9.65 39.18 3.18
750 751 1.339610 CCGGTTCAGGCAAATTTGACA 59.660 47.619 25.59 3.16 39.18 3.58
751 752 2.064573 CCGGTTCAGGCAAATTTGAC 57.935 50.000 22.31 19.61 36.08 3.18
775 776 4.522789 GGATTGACTAAGAAAACCAGCCAA 59.477 41.667 0.00 0.00 0.00 4.52
790 791 0.958822 GTTTGCCCGTTGGATTGACT 59.041 50.000 0.00 0.00 0.00 3.41
791 792 0.386731 CGTTTGCCCGTTGGATTGAC 60.387 55.000 0.00 0.00 0.00 3.18
891 892 0.109597 CAGAATGCAACGAACTGCCC 60.110 55.000 0.00 0.00 41.90 5.36
907 908 4.182433 TGGGTGGTTGTGCGCAGA 62.182 61.111 12.22 6.80 0.00 4.26
908 909 3.964875 GTGGGTGGTTGTGCGCAG 61.965 66.667 12.22 0.00 0.00 5.18
1006 1010 4.016706 GGTGGCCGTGCTACAGGT 62.017 66.667 12.81 0.00 41.80 4.00
1120 1124 1.622449 CCAGTACATCTCCAGGTCCCA 60.622 57.143 0.00 0.00 0.00 4.37
1657 1661 1.610624 CCGTCCAACCTTGCATGTAGT 60.611 52.381 0.00 0.00 0.00 2.73
1708 1712 0.804989 GCGACCATGGTTCCAAGAAG 59.195 55.000 20.85 4.72 0.00 2.85
1794 1798 4.194640 TCTCACACTACTACGTATGACCC 58.805 47.826 0.00 0.00 0.00 4.46
1795 1799 5.567552 GTTCTCACACTACTACGTATGACC 58.432 45.833 0.00 0.00 0.00 4.02
1796 1800 5.062683 TCGTTCTCACACTACTACGTATGAC 59.937 44.000 0.00 0.00 0.00 3.06
1797 1801 5.170748 TCGTTCTCACACTACTACGTATGA 58.829 41.667 0.00 0.00 0.00 2.15
1798 1802 5.460571 TCGTTCTCACACTACTACGTATG 57.539 43.478 0.00 0.00 0.00 2.39
1799 1803 7.959689 ATATCGTTCTCACACTACTACGTAT 57.040 36.000 0.00 0.00 0.00 3.06
1800 1804 7.278646 ACAATATCGTTCTCACACTACTACGTA 59.721 37.037 0.00 0.00 0.00 3.57
1801 1805 6.093219 ACAATATCGTTCTCACACTACTACGT 59.907 38.462 0.00 0.00 0.00 3.57
1802 1806 6.484540 ACAATATCGTTCTCACACTACTACG 58.515 40.000 0.00 0.00 0.00 3.51
1905 1909 6.287107 ACTTACGACTGAACTGAAAACATG 57.713 37.500 0.00 0.00 0.00 3.21
1954 2927 2.370189 GGCATAGGTAGACTGCTGGATT 59.630 50.000 0.00 0.00 36.18 3.01
1969 2942 7.206981 ACCATTCTTTTTATCGATGGCATAG 57.793 36.000 8.54 0.00 0.00 2.23
1973 2946 6.861065 TCTACCATTCTTTTTATCGATGGC 57.139 37.500 8.54 0.00 0.00 4.40
1986 3377 5.471424 TGGATCCTTCTCATCTACCATTCT 58.529 41.667 14.23 0.00 0.00 2.40
1991 3382 5.559148 ACATTGGATCCTTCTCATCTACC 57.441 43.478 14.23 0.00 0.00 3.18
1992 3383 9.249053 TCTATACATTGGATCCTTCTCATCTAC 57.751 37.037 14.23 0.00 0.00 2.59
1998 3389 6.016192 TCGTGTCTATACATTGGATCCTTCTC 60.016 42.308 14.23 0.00 38.08 2.87
2003 3394 5.597806 TGTTCGTGTCTATACATTGGATCC 58.402 41.667 4.20 4.20 38.08 3.36
2004 3395 7.254455 CCTTTGTTCGTGTCTATACATTGGATC 60.254 40.741 0.00 0.00 38.08 3.36
2009 3400 4.328983 CGCCTTTGTTCGTGTCTATACATT 59.671 41.667 0.00 0.00 38.08 2.71
2012 3403 2.028883 GCGCCTTTGTTCGTGTCTATAC 59.971 50.000 0.00 0.00 0.00 1.47
2016 3407 1.222115 GAGCGCCTTTGTTCGTGTCT 61.222 55.000 2.29 0.00 0.00 3.41
2030 3421 3.781770 CTGGATCTCCGTGGAGCGC 62.782 68.421 11.17 0.00 41.71 5.92
2048 3439 3.689649 ACTCAATCGGTATTGACCTTTGC 59.310 43.478 0.00 0.00 45.17 3.68
2069 3460 4.234574 GTTTTCGATGGATTTTGTGGGAC 58.765 43.478 0.00 0.00 0.00 4.46
2072 3463 4.444056 GTGTGTTTTCGATGGATTTTGTGG 59.556 41.667 0.00 0.00 0.00 4.17
2569 3969 2.688666 AATCGCTGGGAGGAGCCA 60.689 61.111 0.00 0.00 38.95 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.