Multiple sequence alignment - TraesCS2D01G281500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G281500 chr2D 100.000 5301 0 0 1 5301 354739244 354744544 0.000000e+00 9790.0
1 TraesCS2D01G281500 chr2D 87.097 124 12 2 1598 1717 17466201 17466078 2.570000e-28 137.0
2 TraesCS2D01G281500 chr2D 85.938 128 16 2 1590 1716 295243650 295243776 9.260000e-28 135.0
3 TraesCS2D01G281500 chr2B 91.808 1770 115 18 1710 3472 421705416 421707162 0.000000e+00 2438.0
4 TraesCS2D01G281500 chr2B 93.723 1163 59 9 3462 4622 421707182 421708332 0.000000e+00 1731.0
5 TraesCS2D01G281500 chr2B 92.170 894 29 15 561 1426 421704306 421705186 0.000000e+00 1225.0
6 TraesCS2D01G281500 chr2B 90.612 490 35 6 4620 5099 421708375 421708863 1.610000e-179 640.0
7 TraesCS2D01G281500 chr2B 83.624 574 79 12 4 566 516325762 516326331 4.700000e-145 525.0
8 TraesCS2D01G281500 chr2B 92.391 184 13 1 5118 5301 421708855 421709037 1.460000e-65 261.0
9 TraesCS2D01G281500 chr2B 92.593 135 8 1 1445 1577 421705171 421705305 5.420000e-45 193.0
10 TraesCS2D01G281500 chr2B 83.660 153 22 3 2834 2983 30999681 30999833 1.990000e-29 141.0
11 TraesCS2D01G281500 chr2B 83.660 153 22 3 2834 2983 369805942 369805790 1.990000e-29 141.0
12 TraesCS2D01G281500 chr2A 91.556 1279 71 16 1710 2977 474307675 474308927 0.000000e+00 1729.0
13 TraesCS2D01G281500 chr2A 91.149 1175 76 16 3462 4622 474309368 474310528 0.000000e+00 1568.0
14 TraesCS2D01G281500 chr2A 95.065 689 19 6 4620 5301 474310570 474311250 0.000000e+00 1070.0
15 TraesCS2D01G281500 chr2A 92.327 391 27 3 3083 3472 474308960 474309348 2.160000e-153 553.0
16 TraesCS2D01G281500 chr2A 92.517 147 9 1 1280 1426 474307299 474307443 5.380000e-50 209.0
17 TraesCS2D01G281500 chr2A 95.402 87 2 2 564 650 474306648 474306732 2.570000e-28 137.0
18 TraesCS2D01G281500 chr2A 94.253 87 3 2 564 650 474284547 474284631 1.200000e-26 132.0
19 TraesCS2D01G281500 chr2A 96.154 52 2 0 3258 3309 444324872 444324821 9.460000e-13 86.1
20 TraesCS2D01G281500 chr7A 92.147 573 35 7 1 566 225611102 225611671 0.000000e+00 800.0
21 TraesCS2D01G281500 chr7A 84.783 138 14 4 1585 1718 32629538 32629404 1.200000e-26 132.0
22 TraesCS2D01G281500 chr5B 90.718 571 44 6 2 566 489149360 489149927 0.000000e+00 752.0
23 TraesCS2D01G281500 chr5B 84.783 138 13 6 1586 1718 678906308 678906174 1.200000e-26 132.0
24 TraesCS2D01G281500 chr5D 89.298 570 49 7 1 564 43377631 43378194 0.000000e+00 704.0
25 TraesCS2D01G281500 chr3D 89.789 568 21 15 4 566 350117617 350118152 0.000000e+00 693.0
26 TraesCS2D01G281500 chr4D 85.938 576 62 15 4 566 331666857 331667426 9.830000e-167 597.0
27 TraesCS2D01G281500 chr6B 83.798 574 78 12 4 566 457266767 457266198 1.010000e-146 531.0
28 TraesCS2D01G281500 chr6A 82.840 169 29 0 2834 3002 449821924 449821756 9.200000e-33 152.0
29 TraesCS2D01G281500 chr7B 77.567 263 40 10 2834 3078 699149016 699148755 1.990000e-29 141.0
30 TraesCS2D01G281500 chr3B 85.714 133 18 1 1585 1717 11177485 11177616 7.160000e-29 139.0
31 TraesCS2D01G281500 chr1B 85.496 131 16 3 1590 1718 63181433 63181562 3.330000e-27 134.0
32 TraesCS2D01G281500 chr3A 84.286 140 16 5 1582 1717 67347127 67347264 1.200000e-26 132.0
33 TraesCS2D01G281500 chr5A 84.783 138 12 7 1585 1717 621864237 621864104 4.310000e-26 130.0
34 TraesCS2D01G281500 chr1D 84.783 138 12 5 1585 1717 38563084 38562951 4.310000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G281500 chr2D 354739244 354744544 5300 False 9790.000000 9790 100.000000 1 5301 1 chr2D.!!$F2 5300
1 TraesCS2D01G281500 chr2B 421704306 421709037 4731 False 1081.333333 2438 92.216167 561 5301 6 chr2B.!!$F3 4740
2 TraesCS2D01G281500 chr2B 516325762 516326331 569 False 525.000000 525 83.624000 4 566 1 chr2B.!!$F2 562
3 TraesCS2D01G281500 chr2A 474306648 474311250 4602 False 877.666667 1729 93.002667 564 5301 6 chr2A.!!$F2 4737
4 TraesCS2D01G281500 chr7A 225611102 225611671 569 False 800.000000 800 92.147000 1 566 1 chr7A.!!$F1 565
5 TraesCS2D01G281500 chr5B 489149360 489149927 567 False 752.000000 752 90.718000 2 566 1 chr5B.!!$F1 564
6 TraesCS2D01G281500 chr5D 43377631 43378194 563 False 704.000000 704 89.298000 1 564 1 chr5D.!!$F1 563
7 TraesCS2D01G281500 chr3D 350117617 350118152 535 False 693.000000 693 89.789000 4 566 1 chr3D.!!$F1 562
8 TraesCS2D01G281500 chr4D 331666857 331667426 569 False 597.000000 597 85.938000 4 566 1 chr4D.!!$F1 562
9 TraesCS2D01G281500 chr6B 457266198 457266767 569 True 531.000000 531 83.798000 4 566 1 chr6B.!!$R1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 376 0.898320 AGGTGCAGCTACCAGTAGTG 59.102 55.0 18.63 5.24 43.37 2.74 F
1671 1717 0.036388 CACACACGCATCCTACCCTT 60.036 55.0 0.00 0.00 0.00 3.95 F
2259 2317 0.179018 ATCAGCGGGGCATCCTTAAC 60.179 55.0 0.00 0.00 0.00 2.01 F
3500 3588 0.036022 ACTGAAGGCAGCCTTGAGAC 59.964 55.0 38.53 22.37 45.48 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2018 0.034059 GCGGTCTCCCTCATACCATG 59.966 60.0 0.0 0.0 32.55 3.66 R
3438 3497 0.035739 AAGGCTTTCGACCGGCTAAA 59.964 50.0 0.0 0.0 35.37 1.85 R
4046 4142 1.244816 GGCCCTGTACAAACCAAGTC 58.755 55.0 0.0 0.0 0.00 3.01 R
4454 4551 0.315251 GTTCACAAAAGCTCCAGCCC 59.685 55.0 0.0 0.0 43.38 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 95 5.490139 ACTGGATTTGAATCTAACATGCG 57.510 39.130 0.00 0.00 35.73 4.73
195 200 9.569122 GAGTTCTAGGATTCTCTACTGTAAGAT 57.431 37.037 0.00 0.00 37.43 2.40
247 255 8.992073 ACTTGCAAATCTTTTATTTCATGGAAC 58.008 29.630 0.00 0.00 0.00 3.62
346 356 2.940994 TGCAACCTACCAAAGTAGCA 57.059 45.000 0.00 0.00 44.05 3.49
365 375 1.276421 CAAGGTGCAGCTACCAGTAGT 59.724 52.381 20.51 0.00 43.37 2.73
366 376 0.898320 AGGTGCAGCTACCAGTAGTG 59.102 55.000 18.63 5.24 43.37 2.74
381 391 5.163195 ACCAGTAGTGTGAGGACATTTCTTT 60.163 40.000 0.00 0.00 33.63 2.52
391 401 6.305638 GTGAGGACATTTCTTTAAAATCACGC 59.694 38.462 0.00 0.00 0.00 5.34
459 472 8.669055 TTGTTAGTAAGGGAACTATAGACCAA 57.331 34.615 6.78 0.00 42.68 3.67
497 511 9.593134 GAATCTCTTCTGCTTTTATTCTACAGA 57.407 33.333 0.00 0.00 35.67 3.41
611 627 2.567615 AGTCTTCCATTACAGCGAGGTT 59.432 45.455 0.00 0.00 0.00 3.50
612 628 3.767673 AGTCTTCCATTACAGCGAGGTTA 59.232 43.478 0.00 0.00 0.00 2.85
613 629 3.864003 GTCTTCCATTACAGCGAGGTTAC 59.136 47.826 0.00 0.00 0.00 2.50
614 630 3.512329 TCTTCCATTACAGCGAGGTTACA 59.488 43.478 0.00 0.00 0.00 2.41
615 631 3.520290 TCCATTACAGCGAGGTTACAG 57.480 47.619 0.00 0.00 0.00 2.74
616 632 2.829720 TCCATTACAGCGAGGTTACAGT 59.170 45.455 0.00 0.00 0.00 3.55
617 633 3.119245 TCCATTACAGCGAGGTTACAGTC 60.119 47.826 0.00 0.00 0.00 3.51
625 641 1.549203 GAGGTTACAGTCCCCGTGTA 58.451 55.000 0.00 0.00 0.00 2.90
674 690 2.173356 TGGTCTGGGCCATCTTTATCAG 59.827 50.000 6.72 0.00 32.81 2.90
680 696 3.181440 TGGGCCATCTTTATCAGTCCATC 60.181 47.826 0.00 0.00 0.00 3.51
685 701 5.049818 GCCATCTTTATCAGTCCATCGAAAG 60.050 44.000 0.00 0.00 0.00 2.62
719 735 9.190858 CATAGTTTCTCATTTCTCGATCCTAAG 57.809 37.037 0.00 0.00 0.00 2.18
793 836 1.419762 TGGCACTCCAGAGTTGCTAAA 59.580 47.619 16.39 5.89 40.20 1.85
1239 1283 1.419387 CCCCATGACTCCCTTCTCATC 59.581 57.143 0.00 0.00 0.00 2.92
1259 1303 5.127845 TCATCTCGTTCCTCTATCTTTTGCT 59.872 40.000 0.00 0.00 0.00 3.91
1340 1384 0.041090 AGTTGGAATGCCGGGGATTT 59.959 50.000 15.31 0.00 36.79 2.17
1369 1413 3.717392 TGTGATTGTTATATTCCCGGGGA 59.283 43.478 23.50 14.48 0.00 4.81
1377 1421 1.656587 TATTCCCGGGGATGATGGAG 58.343 55.000 25.95 0.00 0.00 3.86
1383 1427 1.717032 CGGGGATGATGGAGGTAGAA 58.283 55.000 0.00 0.00 0.00 2.10
1426 1470 7.346175 TCTTTGATGGAATTGGATGGATTCATT 59.654 33.333 0.00 0.00 35.66 2.57
1428 1472 8.550280 TTGATGGAATTGGATGGATTCATTTA 57.450 30.769 0.00 0.00 35.66 1.40
1430 1474 9.161572 TGATGGAATTGGATGGATTCATTTATT 57.838 29.630 0.00 0.00 35.66 1.40
1457 1501 8.782339 ATTTTGAGACAAAATTGGATGGATTC 57.218 30.769 14.14 0.00 0.00 2.52
1458 1502 6.914654 TTGAGACAAAATTGGATGGATTCA 57.085 33.333 0.00 0.00 0.00 2.57
1459 1503 7.484993 TTGAGACAAAATTGGATGGATTCAT 57.515 32.000 0.00 0.00 36.09 2.57
1460 1504 6.869695 TGAGACAAAATTGGATGGATTCATG 58.130 36.000 0.00 0.00 32.98 3.07
1461 1505 6.438108 TGAGACAAAATTGGATGGATTCATGT 59.562 34.615 0.00 0.00 32.98 3.21
1462 1506 7.038870 TGAGACAAAATTGGATGGATTCATGTT 60.039 33.333 0.00 0.00 32.98 2.71
1488 1532 6.372659 AGTGACTTGGTTTGATATGCTAACAG 59.627 38.462 0.00 0.00 34.50 3.16
1513 1557 5.084519 TCTCTGCCCTAGTTTTTCTAGTGA 58.915 41.667 0.00 0.00 43.23 3.41
1547 1593 4.959596 TTACTTGCGACGAGAGAATACT 57.040 40.909 0.00 0.00 0.00 2.12
1555 1601 3.749088 CGACGAGAGAATACTAGCATCCT 59.251 47.826 0.00 0.00 0.00 3.24
1571 1617 8.001875 ACTAGCATCCTTTCTAGAACATCTCTA 58.998 37.037 4.18 2.69 36.63 2.43
1573 1619 8.261349 AGCATCCTTTCTAGAACATCTCTATT 57.739 34.615 4.18 0.00 36.02 1.73
1575 1621 9.988815 GCATCCTTTCTAGAACATCTCTATTTA 57.011 33.333 4.18 0.00 36.02 1.40
1613 1659 4.776795 TTGAGAACACAGTATAGACGCA 57.223 40.909 0.00 0.00 0.00 5.24
1616 1662 4.142665 TGAGAACACAGTATAGACGCAGAC 60.143 45.833 0.00 0.00 0.00 3.51
1619 1665 1.064208 CACAGTATAGACGCAGACGCT 59.936 52.381 0.00 0.00 45.53 5.07
1620 1666 1.331138 ACAGTATAGACGCAGACGCTC 59.669 52.381 0.00 0.00 45.53 5.03
1621 1667 1.330829 CAGTATAGACGCAGACGCTCA 59.669 52.381 0.00 0.00 45.53 4.26
1622 1668 2.031595 CAGTATAGACGCAGACGCTCAT 60.032 50.000 0.00 0.00 45.53 2.90
1625 1671 3.710326 ATAGACGCAGACGCTCATTTA 57.290 42.857 0.00 0.00 45.53 1.40
1626 1672 2.586258 AGACGCAGACGCTCATTTAT 57.414 45.000 0.00 0.00 45.53 1.40
1627 1673 3.710326 AGACGCAGACGCTCATTTATA 57.290 42.857 0.00 0.00 45.53 0.98
1628 1674 3.372954 AGACGCAGACGCTCATTTATAC 58.627 45.455 0.00 0.00 45.53 1.47
1629 1675 3.113322 GACGCAGACGCTCATTTATACA 58.887 45.455 0.00 0.00 45.53 2.29
1630 1676 3.717707 ACGCAGACGCTCATTTATACAT 58.282 40.909 0.00 0.00 45.53 2.29
1632 1678 3.662713 CGCAGACGCTCATTTATACATGC 60.663 47.826 0.00 0.00 35.30 4.06
1633 1679 3.248363 GCAGACGCTCATTTATACATGCA 59.752 43.478 0.00 0.00 34.30 3.96
1634 1680 4.083643 GCAGACGCTCATTTATACATGCAT 60.084 41.667 0.00 0.00 34.30 3.96
1636 1682 6.528826 CAGACGCTCATTTATACATGCATAC 58.471 40.000 0.00 0.00 0.00 2.39
1638 1684 6.146184 AGACGCTCATTTATACATGCATACAC 59.854 38.462 0.00 0.00 0.00 2.90
1641 1687 6.146021 CGCTCATTTATACATGCATACACTCA 59.854 38.462 0.00 0.00 0.00 3.41
1642 1688 7.148523 CGCTCATTTATACATGCATACACTCAT 60.149 37.037 0.00 0.00 0.00 2.90
1643 1689 8.173775 GCTCATTTATACATGCATACACTCATC 58.826 37.037 0.00 0.00 0.00 2.92
1644 1690 8.552083 TCATTTATACATGCATACACTCATCC 57.448 34.615 0.00 0.00 0.00 3.51
1645 1691 8.156165 TCATTTATACATGCATACACTCATCCA 58.844 33.333 0.00 0.00 0.00 3.41
1649 1695 9.603921 TTATACATGCATACACTCATCCATATG 57.396 33.333 0.00 0.00 0.00 1.78
1650 1696 6.117975 ACATGCATACACTCATCCATATGA 57.882 37.500 3.65 0.00 39.87 2.15
1651 1697 6.536447 ACATGCATACACTCATCCATATGAA 58.464 36.000 3.65 0.00 41.57 2.57
1652 1698 6.429078 ACATGCATACACTCATCCATATGAAC 59.571 38.462 3.65 0.00 41.57 3.18
1653 1699 5.927819 TGCATACACTCATCCATATGAACA 58.072 37.500 3.65 0.00 41.57 3.18
1656 1702 6.293081 GCATACACTCATCCATATGAACACAC 60.293 42.308 3.65 0.00 41.57 3.82
1657 1703 5.164620 ACACTCATCCATATGAACACACA 57.835 39.130 3.65 0.00 41.57 3.72
1660 1706 2.935849 TCATCCATATGAACACACACGC 59.064 45.455 3.65 0.00 39.20 5.34
1661 1707 2.464157 TCCATATGAACACACACGCA 57.536 45.000 3.65 0.00 0.00 5.24
1662 1708 2.984562 TCCATATGAACACACACGCAT 58.015 42.857 3.65 0.00 0.00 4.73
1664 1710 2.032054 CCATATGAACACACACGCATCC 59.968 50.000 3.65 0.00 0.00 3.51
1665 1711 2.760634 TATGAACACACACGCATCCT 57.239 45.000 0.00 0.00 0.00 3.24
1667 1713 1.790755 TGAACACACACGCATCCTAC 58.209 50.000 0.00 0.00 0.00 3.18
1668 1714 1.076332 GAACACACACGCATCCTACC 58.924 55.000 0.00 0.00 0.00 3.18
1670 1716 1.192146 ACACACACGCATCCTACCCT 61.192 55.000 0.00 0.00 0.00 4.34
1671 1717 0.036388 CACACACGCATCCTACCCTT 60.036 55.000 0.00 0.00 0.00 3.95
1672 1718 1.206132 CACACACGCATCCTACCCTTA 59.794 52.381 0.00 0.00 0.00 2.69
1674 1720 2.158957 ACACACGCATCCTACCCTTATG 60.159 50.000 0.00 0.00 0.00 1.90
1675 1721 2.102420 CACACGCATCCTACCCTTATGA 59.898 50.000 0.00 0.00 0.00 2.15
1676 1722 2.365617 ACACGCATCCTACCCTTATGAG 59.634 50.000 0.00 0.00 0.00 2.90
1677 1723 1.344763 ACGCATCCTACCCTTATGAGC 59.655 52.381 0.00 0.00 0.00 4.26
1678 1724 1.344438 CGCATCCTACCCTTATGAGCA 59.656 52.381 0.00 0.00 0.00 4.26
1682 1728 4.636249 CATCCTACCCTTATGAGCACTTC 58.364 47.826 0.00 0.00 0.00 3.01
1683 1729 3.039011 TCCTACCCTTATGAGCACTTCC 58.961 50.000 0.00 0.00 0.00 3.46
1685 1731 1.568504 ACCCTTATGAGCACTTCCGA 58.431 50.000 0.00 0.00 0.00 4.55
1686 1732 1.482593 ACCCTTATGAGCACTTCCGAG 59.517 52.381 0.00 0.00 0.00 4.63
1687 1733 1.757118 CCCTTATGAGCACTTCCGAGA 59.243 52.381 0.00 0.00 0.00 4.04
1688 1734 2.223923 CCCTTATGAGCACTTCCGAGAG 60.224 54.545 0.00 0.00 0.00 3.20
1690 1736 3.490078 CCTTATGAGCACTTCCGAGAGAC 60.490 52.174 0.00 0.00 0.00 3.36
1691 1737 1.846007 ATGAGCACTTCCGAGAGACT 58.154 50.000 0.00 0.00 0.00 3.24
1692 1738 0.884514 TGAGCACTTCCGAGAGACTG 59.115 55.000 0.00 0.00 0.00 3.51
1693 1739 1.169577 GAGCACTTCCGAGAGACTGA 58.830 55.000 0.00 0.00 0.00 3.41
1694 1740 1.132262 GAGCACTTCCGAGAGACTGAG 59.868 57.143 0.00 0.00 0.00 3.35
1695 1741 0.885196 GCACTTCCGAGAGACTGAGT 59.115 55.000 0.00 0.00 0.00 3.41
1696 1742 1.135517 GCACTTCCGAGAGACTGAGTC 60.136 57.143 3.98 3.98 0.00 3.36
1697 1743 1.129624 CACTTCCGAGAGACTGAGTCG 59.870 57.143 6.99 0.00 37.67 4.18
1699 1745 2.795297 CCGAGAGACTGAGTCGGC 59.205 66.667 6.99 3.72 46.18 5.54
1700 1746 2.041115 CCGAGAGACTGAGTCGGCA 61.041 63.158 6.99 0.00 46.18 5.69
1701 1747 1.380403 CCGAGAGACTGAGTCGGCAT 61.380 60.000 6.99 0.00 46.18 4.40
1702 1748 1.300481 CGAGAGACTGAGTCGGCATA 58.700 55.000 6.99 0.00 37.67 3.14
1703 1749 1.876799 CGAGAGACTGAGTCGGCATAT 59.123 52.381 6.99 0.00 37.67 1.78
1704 1750 2.095969 CGAGAGACTGAGTCGGCATATC 60.096 54.545 6.99 0.00 37.67 1.63
1705 1751 2.881513 GAGAGACTGAGTCGGCATATCA 59.118 50.000 6.99 0.00 37.67 2.15
1706 1752 3.495331 AGAGACTGAGTCGGCATATCAT 58.505 45.455 6.99 0.00 37.67 2.45
1707 1753 3.505680 AGAGACTGAGTCGGCATATCATC 59.494 47.826 6.99 0.00 37.67 2.92
1708 1754 3.495331 AGACTGAGTCGGCATATCATCT 58.505 45.455 6.99 0.00 37.67 2.90
1709 1755 3.894427 AGACTGAGTCGGCATATCATCTT 59.106 43.478 6.99 0.00 37.67 2.40
1710 1756 3.986572 GACTGAGTCGGCATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
1711 1757 3.638627 ACTGAGTCGGCATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
1712 1758 4.282957 ACTGAGTCGGCATATCATCTTGAT 59.717 41.667 0.00 0.00 40.72 2.57
1713 1759 5.478332 ACTGAGTCGGCATATCATCTTGATA 59.522 40.000 0.00 0.05 42.83 2.15
1743 1789 5.241506 CCACAAACAAGGATGTGTCAATACT 59.758 40.000 5.32 0.00 44.21 2.12
1744 1790 6.373779 CACAAACAAGGATGTGTCAATACTC 58.626 40.000 0.00 0.00 41.51 2.59
1745 1791 6.017192 CACAAACAAGGATGTGTCAATACTCA 60.017 38.462 0.00 0.00 41.51 3.41
1746 1792 6.545666 ACAAACAAGGATGTGTCAATACTCAA 59.454 34.615 0.00 0.00 40.46 3.02
1747 1793 7.231317 ACAAACAAGGATGTGTCAATACTCAAT 59.769 33.333 0.00 0.00 40.46 2.57
1748 1794 8.729756 CAAACAAGGATGTGTCAATACTCAATA 58.270 33.333 0.00 0.00 40.46 1.90
1749 1795 7.849804 ACAAGGATGTGTCAATACTCAATAC 57.150 36.000 0.00 0.00 38.69 1.89
1831 1877 0.954452 GCCTGGACAGTGGACAAAAG 59.046 55.000 0.00 0.00 0.00 2.27
1834 1880 3.490348 CCTGGACAGTGGACAAAAGAAT 58.510 45.455 0.00 0.00 0.00 2.40
1835 1881 3.503748 CCTGGACAGTGGACAAAAGAATC 59.496 47.826 0.00 0.00 0.00 2.52
1836 1882 4.136796 CTGGACAGTGGACAAAAGAATCA 58.863 43.478 0.00 0.00 0.00 2.57
1837 1883 4.136796 TGGACAGTGGACAAAAGAATCAG 58.863 43.478 0.00 0.00 0.00 2.90
1839 1885 4.453819 GGACAGTGGACAAAAGAATCAGAG 59.546 45.833 0.00 0.00 0.00 3.35
1840 1886 5.296151 ACAGTGGACAAAAGAATCAGAGA 57.704 39.130 0.00 0.00 0.00 3.10
1843 1890 7.453393 ACAGTGGACAAAAGAATCAGAGATTA 58.547 34.615 0.00 0.00 0.00 1.75
1851 1898 8.499162 ACAAAAGAATCAGAGATTAACTTCACG 58.501 33.333 0.00 0.00 0.00 4.35
1872 1919 2.344950 CTCACCACAGAACAGATCAGC 58.655 52.381 0.00 0.00 0.00 4.26
1900 1954 1.148310 CCAGTGTTGGCGTACTCTTG 58.852 55.000 0.00 0.00 37.73 3.02
1962 2016 2.359975 GCGTCCTGGTTGAAGGGG 60.360 66.667 0.00 0.00 37.96 4.79
1964 2018 2.035783 GTCCTGGTTGAAGGGGGC 59.964 66.667 0.00 0.00 37.96 5.80
1965 2019 2.451493 TCCTGGTTGAAGGGGGCA 60.451 61.111 0.00 0.00 37.96 5.36
1971 2025 0.261696 GGTTGAAGGGGGCATGGTAT 59.738 55.000 0.00 0.00 0.00 2.73
1976 2030 1.363530 AAGGGGGCATGGTATGAGGG 61.364 60.000 0.00 0.00 0.00 4.30
1980 2034 0.398318 GGGCATGGTATGAGGGAGAC 59.602 60.000 0.00 0.00 0.00 3.36
1992 2046 3.512516 GGAGACCGCTGCCATTGC 61.513 66.667 0.00 0.00 38.26 3.56
2013 2067 1.476845 TTGGCTTGAGTGCGGAGGTA 61.477 55.000 0.00 0.00 0.00 3.08
2045 2099 3.857052 CAGGTGGAACAATCGCTTAGTA 58.143 45.455 0.00 0.00 44.16 1.82
2047 2101 4.876107 CAGGTGGAACAATCGCTTAGTATT 59.124 41.667 0.00 0.00 44.16 1.89
2122 2177 1.678123 CCATGCTTGAGTGTGGAGGAG 60.678 57.143 0.22 0.00 33.53 3.69
2123 2178 1.277273 CATGCTTGAGTGTGGAGGAGA 59.723 52.381 0.00 0.00 0.00 3.71
2126 2181 1.620819 GCTTGAGTGTGGAGGAGAAGA 59.379 52.381 0.00 0.00 0.00 2.87
2127 2182 2.611722 GCTTGAGTGTGGAGGAGAAGAC 60.612 54.545 0.00 0.00 0.00 3.01
2128 2183 2.381752 TGAGTGTGGAGGAGAAGACA 57.618 50.000 0.00 0.00 0.00 3.41
2129 2184 2.894731 TGAGTGTGGAGGAGAAGACAT 58.105 47.619 0.00 0.00 0.00 3.06
2169 2227 7.307870 GCAAAGAGAAGAGCAGGACATATTATG 60.308 40.741 2.03 2.03 0.00 1.90
2174 2232 8.023021 AGAAGAGCAGGACATATTATGTGTTA 57.977 34.615 13.93 0.00 45.03 2.41
2200 2258 4.712337 TGGGATTAGGTTGTTTGTGTGTTT 59.288 37.500 0.00 0.00 0.00 2.83
2208 2266 4.491763 GGTTGTTTGTGTGTTTCGATTTGC 60.492 41.667 0.00 0.00 0.00 3.68
2215 2273 3.357823 GTGTGTTTCGATTTGCGTGATTC 59.642 43.478 0.00 0.00 41.80 2.52
2216 2274 3.249799 TGTGTTTCGATTTGCGTGATTCT 59.750 39.130 0.00 0.00 41.80 2.40
2223 2281 1.243342 TTTGCGTGATTCTGGGCCTG 61.243 55.000 4.53 4.06 0.00 4.85
2254 2312 1.598130 GTGTATCAGCGGGGCATCC 60.598 63.158 0.00 0.00 0.00 3.51
2259 2317 0.179018 ATCAGCGGGGCATCCTTAAC 60.179 55.000 0.00 0.00 0.00 2.01
2388 2446 5.641783 TGTTATTTGTCATCCATGTGGTG 57.358 39.130 0.00 0.00 36.34 4.17
2455 2513 7.740805 AGGAGGATAACTTCATTAGTGGAATC 58.259 38.462 0.00 0.00 37.12 2.52
2523 2581 9.778741 GATATAGATGTTTACTGTCATTCCCAA 57.221 33.333 0.00 0.00 0.00 4.12
2557 2615 3.617045 GCATGGCTAGCACCAAAATCAAA 60.617 43.478 18.24 0.00 44.65 2.69
2559 2617 4.888326 TGGCTAGCACCAAAATCAAATT 57.112 36.364 18.24 0.00 36.55 1.82
2657 2715 4.816385 ACTGTATGTGGCTACATTGCATAC 59.184 41.667 21.52 12.92 45.01 2.39
2673 2731 4.918588 TGCATACTAGGATCACCGAGATA 58.081 43.478 0.00 0.00 40.57 1.98
2731 2789 0.746659 GCAGTGAGCCCACAGTTTTT 59.253 50.000 0.00 0.00 45.54 1.94
2855 2913 5.652014 CACAACAAATATGGTCATAGGTGGT 59.348 40.000 0.00 0.00 0.00 4.16
2944 3002 8.544622 TCCAACATCACCTATTTAGTGTTATCA 58.455 33.333 0.00 0.00 36.58 2.15
2952 3010 8.830580 CACCTATTTAGTGTTATCATTCAGTGG 58.169 37.037 0.00 0.00 0.00 4.00
2999 3057 0.251787 GACAACTGGCCCCTGGAAAT 60.252 55.000 0.00 0.00 0.00 2.17
3012 3070 4.248058 CCCTGGAAATTTCTGTGCAATTC 58.752 43.478 17.42 0.00 0.00 2.17
3019 3077 7.225145 TGGAAATTTCTGTGCAATTCTTTTCTG 59.775 33.333 17.42 0.00 0.00 3.02
3032 3090 7.463251 GCAATTCTTTTCTGCCGATATTTTGTC 60.463 37.037 0.00 0.00 0.00 3.18
3037 3095 3.444916 TCTGCCGATATTTTGTCGAGAC 58.555 45.455 0.00 0.00 41.40 3.36
3050 3108 4.123497 TGTCGAGACAATGTCCCATAAG 57.877 45.455 10.12 0.00 38.56 1.73
3051 3109 3.513912 TGTCGAGACAATGTCCCATAAGT 59.486 43.478 10.12 0.00 38.56 2.24
3052 3110 4.113354 GTCGAGACAATGTCCCATAAGTC 58.887 47.826 10.12 0.00 32.18 3.01
3066 3124 9.535878 TGTCCCATAAGTCAAATTTTGTTTTAC 57.464 29.630 8.89 0.51 0.00 2.01
3156 3214 7.766278 AGCCAGATTGACTTGTTACTGTATTAG 59.234 37.037 0.00 0.00 0.00 1.73
3286 3344 5.119694 AGAAAGAAAGTTGAAGAGCGTCTT 58.880 37.500 0.71 0.71 39.87 3.01
3298 3356 1.128188 AGCGTCTTCCCCTTTGTCCT 61.128 55.000 0.00 0.00 0.00 3.85
3399 3458 4.412796 AGAATCATCTTTCGGCTCATGA 57.587 40.909 0.00 0.00 29.15 3.07
3408 3467 4.404394 TCTTTCGGCTCATGACATAAGGTA 59.596 41.667 0.00 0.00 0.00 3.08
3423 3482 7.093068 TGACATAAGGTATTGGCTTAAGTCTCA 60.093 37.037 8.83 0.22 34.43 3.27
3426 3485 5.091261 AGGTATTGGCTTAAGTCTCACAG 57.909 43.478 8.83 0.00 0.00 3.66
3430 3489 1.343142 TGGCTTAAGTCTCACAGCGAA 59.657 47.619 8.83 0.00 32.68 4.70
3438 3497 1.302033 CTCACAGCGAAGGCAACCT 60.302 57.895 0.00 0.00 43.41 3.50
3448 3507 3.587095 GGCAACCTTTAGCCGGTC 58.413 61.111 1.90 0.00 41.70 4.79
3472 3531 6.701400 TCGAAAGCCTTATTACCCGTAATAAC 59.299 38.462 13.54 7.51 40.85 1.89
3489 3577 2.262423 AACTGGACAGAACTGAAGGC 57.738 50.000 6.29 0.00 0.00 4.35
3500 3588 0.036022 ACTGAAGGCAGCCTTGAGAC 59.964 55.000 38.53 22.37 45.48 3.36
3511 3599 6.782988 AGGCAGCCTTGAGACTATACTTTATA 59.217 38.462 8.70 0.00 0.00 0.98
3521 3609 7.733501 TGAGACTATACTTTATAGGGAAAGGGG 59.266 40.741 5.44 0.00 41.90 4.79
3522 3610 7.023744 AGACTATACTTTATAGGGAAAGGGGG 58.976 42.308 5.44 0.00 41.90 5.40
3591 3679 5.253330 GTCCATGGTCTTATCAAACTCCAA 58.747 41.667 12.58 0.00 0.00 3.53
3600 3688 5.659525 TCTTATCAAACTCCAATCGGACCTA 59.340 40.000 0.00 0.00 35.91 3.08
3617 3705 5.581085 CGGACCTATTCTGAAAAAGTCGATT 59.419 40.000 0.00 0.00 31.20 3.34
3684 3773 8.726988 TCGGTTTTTGAACTAGATTATTGAAGG 58.273 33.333 0.00 0.00 0.00 3.46
3692 3781 7.500227 TGAACTAGATTATTGAAGGGAGCAATG 59.500 37.037 0.00 0.00 36.68 2.82
3699 3788 4.640771 TTGAAGGGAGCAATGTAAGACT 57.359 40.909 0.00 0.00 0.00 3.24
3701 3790 2.969628 AGGGAGCAATGTAAGACTCG 57.030 50.000 0.00 0.00 0.00 4.18
3714 3803 4.527038 TGTAAGACTCGAAACCTTGGATCT 59.473 41.667 0.00 0.00 0.00 2.75
3744 3833 3.550436 GGCATCACTTAGTACTCTACCGC 60.550 52.174 0.00 0.00 0.00 5.68
3807 3896 1.098050 CAGCAATTGGTACTGGAGGC 58.902 55.000 10.31 0.00 0.00 4.70
3846 3935 5.499313 TCTATGGTTGATGCTGTTGAATCA 58.501 37.500 0.00 0.00 36.49 2.57
3896 3985 5.636123 TGGTGTATTAAACTGGGTTCACAT 58.364 37.500 0.00 0.00 0.00 3.21
3902 3991 6.575162 ATTAAACTGGGTTCACATGTTCTC 57.425 37.500 0.00 0.00 0.00 2.87
3991 4087 4.640805 TCAATGCTTAACTTCGTCGAAC 57.359 40.909 2.90 0.00 0.00 3.95
3996 4092 5.013861 TGCTTAACTTCGTCGAACATTTC 57.986 39.130 2.90 0.00 0.00 2.17
4094 4190 6.755542 AGTCAGAAAATATCTTCTAGGGGG 57.244 41.667 0.00 0.00 35.73 5.40
4115 4211 8.758829 AGGGGGAAATATGTTTCTGTAAAAATC 58.241 33.333 13.76 0.00 42.66 2.17
4154 4250 1.765904 TCAAGTGAGCAGGTAACACCA 59.234 47.619 0.00 0.00 41.95 4.17
4173 4269 6.924111 ACACCATGTTTTCCTATGATCAAAC 58.076 36.000 0.00 0.00 0.00 2.93
4174 4270 6.493115 ACACCATGTTTTCCTATGATCAAACA 59.507 34.615 10.04 10.04 41.93 2.83
4199 4295 6.552445 ATTCTAGTCTGCAACCTAGATGTT 57.448 37.500 17.97 7.84 0.00 2.71
4203 4299 4.511527 AGTCTGCAACCTAGATGTTGATG 58.488 43.478 14.00 6.98 46.77 3.07
4212 4308 5.605534 ACCTAGATGTTGATGTGCAGATAC 58.394 41.667 0.00 0.00 0.00 2.24
4216 4312 7.928167 CCTAGATGTTGATGTGCAGATACTTTA 59.072 37.037 0.00 0.00 0.00 1.85
4217 4313 7.545362 AGATGTTGATGTGCAGATACTTTAC 57.455 36.000 0.00 0.00 0.00 2.01
4219 4315 6.968131 TGTTGATGTGCAGATACTTTACTC 57.032 37.500 0.00 0.00 0.00 2.59
4230 4326 8.097038 TGCAGATACTTTACTCAATGAGACTTT 58.903 33.333 18.20 0.00 33.32 2.66
4475 4583 1.268079 GGCTGGAGCTTTTGTGAACTC 59.732 52.381 0.00 0.00 41.70 3.01
4530 4639 5.295045 GCCCAAATAGAAATTGCTCCATTTG 59.705 40.000 12.24 12.24 34.62 2.32
4631 4786 7.408756 AAGATGCTTGTATTTAATGCTCCAA 57.591 32.000 0.00 0.00 0.00 3.53
4639 4794 6.568869 TGTATTTAATGCTCCAAAATTCCCG 58.431 36.000 0.00 0.00 0.00 5.14
4641 4796 4.712122 TTAATGCTCCAAAATTCCCGAC 57.288 40.909 0.00 0.00 0.00 4.79
4644 4799 1.423845 CTCCAAAATTCCCGACGCG 59.576 57.895 3.53 3.53 0.00 6.01
4724 4888 5.296035 ACTTCAACTTACTACAAACACTGGC 59.704 40.000 0.00 0.00 0.00 4.85
4856 5027 2.414559 CCGCCTCATTTACAACTTGCTG 60.415 50.000 0.00 0.00 0.00 4.41
4862 5033 6.680810 CCTCATTTACAACTTGCTGAAATCA 58.319 36.000 0.00 0.00 0.00 2.57
4951 5122 2.156504 GCAAATGGATACTGATCGCTCG 59.843 50.000 0.00 0.00 32.28 5.03
5091 5263 3.625649 TTACATGTCCATGCACTGCTA 57.374 42.857 0.00 0.00 42.39 3.49
5208 5380 7.542890 AGTCATGTCTACATTGAACAGAGTAG 58.457 38.462 0.00 0.00 33.61 2.57
5289 5461 8.041323 AGTGTACTGTTTATCTTCCTGGTAATG 58.959 37.037 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 95 4.378874 GCAGTGATGAAAACAGGTTAGCTC 60.379 45.833 0.00 0.00 0.00 4.09
201 206 9.979578 TGCAAGTAGAATATGTTGTTTTCAAAT 57.020 25.926 0.00 0.00 41.76 2.32
346 356 1.276421 CACTACTGGTAGCTGCACCTT 59.724 52.381 17.81 10.18 39.50 3.50
354 364 2.168496 TGTCCTCACACTACTGGTAGC 58.832 52.381 7.58 0.00 36.66 3.58
365 375 7.359595 CGTGATTTTAAAGAAATGTCCTCACA 58.640 34.615 0.00 0.00 36.78 3.58
366 376 6.305638 GCGTGATTTTAAAGAAATGTCCTCAC 59.694 38.462 0.00 0.00 0.00 3.51
381 391 6.708949 AGGAGTTTCTAACTTGCGTGATTTTA 59.291 34.615 0.00 0.00 43.03 1.52
497 511 9.981114 AGTTCTTTTATTTGAATGACCGAAAAT 57.019 25.926 0.00 0.00 0.00 1.82
501 516 9.458374 GAAAAGTTCTTTTATTTGAATGACCGA 57.542 29.630 9.99 0.00 0.00 4.69
613 629 0.968901 TACAGCCTACACGGGGACTG 60.969 60.000 0.00 0.00 42.99 3.51
614 630 0.969409 GTACAGCCTACACGGGGACT 60.969 60.000 0.00 0.00 0.00 3.85
615 631 1.514553 GTACAGCCTACACGGGGAC 59.485 63.158 0.00 0.00 0.00 4.46
616 632 1.683365 GGTACAGCCTACACGGGGA 60.683 63.158 0.00 0.00 0.00 4.81
617 633 2.897972 GGTACAGCCTACACGGGG 59.102 66.667 0.00 0.00 0.00 5.73
674 690 6.899114 ACTATGTTTGTTTCTTTCGATGGAC 58.101 36.000 0.00 0.00 0.00 4.02
689 705 8.119226 GGATCGAGAAATGAGAAACTATGTTTG 58.881 37.037 0.10 0.00 0.00 2.93
763 783 3.565307 TCTGGAGTGCCAACAATCTTTT 58.435 40.909 0.00 0.00 45.41 2.27
767 787 2.191128 ACTCTGGAGTGCCAACAATC 57.809 50.000 2.15 0.00 45.41 2.67
769 789 1.679139 CAACTCTGGAGTGCCAACAA 58.321 50.000 3.88 0.00 45.41 2.83
770 790 0.819259 GCAACTCTGGAGTGCCAACA 60.819 55.000 3.88 0.00 45.41 3.33
1203 1247 1.904032 GGGGGAGCTCTCACTTGAG 59.096 63.158 17.22 0.00 43.36 3.02
1226 1270 2.104170 GGAACGAGATGAGAAGGGAGT 58.896 52.381 0.00 0.00 0.00 3.85
1228 1272 2.024846 AGAGGAACGAGATGAGAAGGGA 60.025 50.000 0.00 0.00 0.00 4.20
1239 1283 6.334202 ACTAAGCAAAAGATAGAGGAACGAG 58.666 40.000 0.00 0.00 0.00 4.18
1259 1303 3.016736 GAGCCAGCAAGCCATTAACTAA 58.983 45.455 0.00 0.00 0.00 2.24
1344 1388 6.044520 TCCCCGGGAATATAACAATCACATAA 59.955 38.462 26.32 0.00 0.00 1.90
1345 1389 5.548446 TCCCCGGGAATATAACAATCACATA 59.452 40.000 26.32 0.00 0.00 2.29
1346 1390 4.352595 TCCCCGGGAATATAACAATCACAT 59.647 41.667 26.32 0.00 0.00 3.21
1369 1413 4.039730 CCAATCGTCTTCTACCTCCATCAT 59.960 45.833 0.00 0.00 0.00 2.45
1377 1421 3.000727 CAACACCCAATCGTCTTCTACC 58.999 50.000 0.00 0.00 0.00 3.18
1383 1427 2.930826 AGAACAACACCCAATCGTCT 57.069 45.000 0.00 0.00 0.00 4.18
1431 1475 9.874205 GAATCCATCCAATTTTGTCTCAAAATA 57.126 29.630 17.01 6.25 30.38 1.40
1432 1476 8.377034 TGAATCCATCCAATTTTGTCTCAAAAT 58.623 29.630 12.69 12.69 0.00 1.82
1433 1477 7.733969 TGAATCCATCCAATTTTGTCTCAAAA 58.266 30.769 9.52 9.52 0.00 2.44
1434 1478 7.300556 TGAATCCATCCAATTTTGTCTCAAA 57.699 32.000 0.00 0.00 0.00 2.69
1435 1479 6.914654 TGAATCCATCCAATTTTGTCTCAA 57.085 33.333 0.00 0.00 0.00 3.02
1436 1480 6.438108 ACATGAATCCATCCAATTTTGTCTCA 59.562 34.615 0.00 0.00 0.00 3.27
1437 1481 6.870769 ACATGAATCCATCCAATTTTGTCTC 58.129 36.000 0.00 0.00 0.00 3.36
1438 1482 6.862469 ACATGAATCCATCCAATTTTGTCT 57.138 33.333 0.00 0.00 0.00 3.41
1439 1483 8.253113 ACTAACATGAATCCATCCAATTTTGTC 58.747 33.333 0.00 0.00 0.00 3.18
1440 1484 8.036575 CACTAACATGAATCCATCCAATTTTGT 58.963 33.333 0.00 0.00 0.00 2.83
1441 1485 8.252417 TCACTAACATGAATCCATCCAATTTTG 58.748 33.333 0.00 0.00 0.00 2.44
1442 1486 8.253113 GTCACTAACATGAATCCATCCAATTTT 58.747 33.333 0.00 0.00 0.00 1.82
1443 1487 7.616935 AGTCACTAACATGAATCCATCCAATTT 59.383 33.333 0.00 0.00 0.00 1.82
1444 1488 7.121382 AGTCACTAACATGAATCCATCCAATT 58.879 34.615 0.00 0.00 0.00 2.32
1445 1489 6.666678 AGTCACTAACATGAATCCATCCAAT 58.333 36.000 0.00 0.00 0.00 3.16
1446 1490 6.065976 AGTCACTAACATGAATCCATCCAA 57.934 37.500 0.00 0.00 0.00 3.53
1447 1491 5.698741 AGTCACTAACATGAATCCATCCA 57.301 39.130 0.00 0.00 0.00 3.41
1448 1492 5.297776 CCAAGTCACTAACATGAATCCATCC 59.702 44.000 0.00 0.00 0.00 3.51
1449 1493 5.882557 ACCAAGTCACTAACATGAATCCATC 59.117 40.000 0.00 0.00 0.00 3.51
1450 1494 5.819991 ACCAAGTCACTAACATGAATCCAT 58.180 37.500 0.00 0.00 0.00 3.41
1451 1495 5.241403 ACCAAGTCACTAACATGAATCCA 57.759 39.130 0.00 0.00 0.00 3.41
1452 1496 6.206634 TCAAACCAAGTCACTAACATGAATCC 59.793 38.462 0.00 0.00 0.00 3.01
1453 1497 7.202016 TCAAACCAAGTCACTAACATGAATC 57.798 36.000 0.00 0.00 0.00 2.52
1454 1498 7.765695 ATCAAACCAAGTCACTAACATGAAT 57.234 32.000 0.00 0.00 0.00 2.57
1455 1499 8.729756 CATATCAAACCAAGTCACTAACATGAA 58.270 33.333 0.00 0.00 0.00 2.57
1456 1500 7.148255 GCATATCAAACCAAGTCACTAACATGA 60.148 37.037 0.00 0.00 0.00 3.07
1457 1501 6.968904 GCATATCAAACCAAGTCACTAACATG 59.031 38.462 0.00 0.00 0.00 3.21
1458 1502 6.886459 AGCATATCAAACCAAGTCACTAACAT 59.114 34.615 0.00 0.00 0.00 2.71
1459 1503 6.237901 AGCATATCAAACCAAGTCACTAACA 58.762 36.000 0.00 0.00 0.00 2.41
1460 1504 6.743575 AGCATATCAAACCAAGTCACTAAC 57.256 37.500 0.00 0.00 0.00 2.34
1461 1505 7.880713 TGTTAGCATATCAAACCAAGTCACTAA 59.119 33.333 0.00 0.00 0.00 2.24
1462 1506 7.390823 TGTTAGCATATCAAACCAAGTCACTA 58.609 34.615 0.00 0.00 0.00 2.74
1547 1593 8.948401 ATAGAGATGTTCTAGAAAGGATGCTA 57.052 34.615 6.78 5.84 41.57 3.49
1586 1632 8.653338 GCGTCTATACTGTGTTCTCAAAAATAA 58.347 33.333 0.00 0.00 0.00 1.40
1588 1634 6.649141 TGCGTCTATACTGTGTTCTCAAAAAT 59.351 34.615 0.00 0.00 0.00 1.82
1589 1635 5.986741 TGCGTCTATACTGTGTTCTCAAAAA 59.013 36.000 0.00 0.00 0.00 1.94
1592 1638 4.457949 TCTGCGTCTATACTGTGTTCTCAA 59.542 41.667 0.00 0.00 0.00 3.02
1593 1639 4.007659 TCTGCGTCTATACTGTGTTCTCA 58.992 43.478 0.00 0.00 0.00 3.27
1594 1640 4.344448 GTCTGCGTCTATACTGTGTTCTC 58.656 47.826 0.00 0.00 0.00 2.87
1595 1641 3.181509 CGTCTGCGTCTATACTGTGTTCT 60.182 47.826 0.00 0.00 0.00 3.01
1596 1642 3.099362 CGTCTGCGTCTATACTGTGTTC 58.901 50.000 0.00 0.00 0.00 3.18
1597 1643 2.731341 GCGTCTGCGTCTATACTGTGTT 60.731 50.000 0.00 0.00 40.81 3.32
1598 1644 1.202154 GCGTCTGCGTCTATACTGTGT 60.202 52.381 0.00 0.00 40.81 3.72
1599 1645 1.467875 GCGTCTGCGTCTATACTGTG 58.532 55.000 0.00 0.00 40.81 3.66
1600 1646 3.920144 GCGTCTGCGTCTATACTGT 57.080 52.632 0.00 0.00 40.81 3.55
1611 1657 3.248363 TGCATGTATAAATGAGCGTCTGC 59.752 43.478 7.11 0.00 43.24 4.26
1613 1659 6.146184 GTGTATGCATGTATAAATGAGCGTCT 59.854 38.462 10.16 0.00 0.00 4.18
1616 1662 6.146021 TGAGTGTATGCATGTATAAATGAGCG 59.854 38.462 10.16 0.00 0.00 5.03
1619 1665 8.156165 TGGATGAGTGTATGCATGTATAAATGA 58.844 33.333 10.16 0.00 0.00 2.57
1620 1666 8.326680 TGGATGAGTGTATGCATGTATAAATG 57.673 34.615 10.16 0.00 0.00 2.32
1625 1671 7.854337 TCATATGGATGAGTGTATGCATGTAT 58.146 34.615 10.16 0.82 39.13 2.29
1626 1672 7.243604 TCATATGGATGAGTGTATGCATGTA 57.756 36.000 10.16 0.00 39.13 2.29
1627 1673 6.117975 TCATATGGATGAGTGTATGCATGT 57.882 37.500 10.16 0.00 39.13 3.21
1628 1674 6.428771 TGTTCATATGGATGAGTGTATGCATG 59.571 38.462 10.16 0.00 43.03 4.06
1629 1675 6.429078 GTGTTCATATGGATGAGTGTATGCAT 59.571 38.462 3.79 3.79 43.03 3.96
1630 1676 5.759763 GTGTTCATATGGATGAGTGTATGCA 59.240 40.000 2.13 0.00 43.03 3.96
1632 1678 6.762661 TGTGTGTTCATATGGATGAGTGTATG 59.237 38.462 2.13 0.00 43.03 2.39
1633 1679 6.763135 GTGTGTGTTCATATGGATGAGTGTAT 59.237 38.462 2.13 0.00 43.03 2.29
1634 1680 6.106003 GTGTGTGTTCATATGGATGAGTGTA 58.894 40.000 2.13 0.00 43.03 2.90
1636 1682 4.033243 CGTGTGTGTTCATATGGATGAGTG 59.967 45.833 2.13 0.00 43.03 3.51
1638 1684 3.001634 GCGTGTGTGTTCATATGGATGAG 59.998 47.826 2.13 0.00 43.03 2.90
1641 1687 2.984562 TGCGTGTGTGTTCATATGGAT 58.015 42.857 2.13 0.00 0.00 3.41
1642 1688 2.464157 TGCGTGTGTGTTCATATGGA 57.536 45.000 2.13 0.00 0.00 3.41
1643 1689 2.032054 GGATGCGTGTGTGTTCATATGG 59.968 50.000 2.13 0.00 0.00 2.74
1644 1690 2.938451 AGGATGCGTGTGTGTTCATATG 59.062 45.455 0.00 0.00 0.00 1.78
1645 1691 3.266510 AGGATGCGTGTGTGTTCATAT 57.733 42.857 0.00 0.00 0.00 1.78
1648 1694 1.606994 GGTAGGATGCGTGTGTGTTCA 60.607 52.381 0.00 0.00 0.00 3.18
1649 1695 1.076332 GGTAGGATGCGTGTGTGTTC 58.924 55.000 0.00 0.00 0.00 3.18
1650 1696 0.321298 GGGTAGGATGCGTGTGTGTT 60.321 55.000 0.00 0.00 0.00 3.32
1651 1697 1.192146 AGGGTAGGATGCGTGTGTGT 61.192 55.000 0.00 0.00 0.00 3.72
1652 1698 0.036388 AAGGGTAGGATGCGTGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
1653 1699 1.563924 TAAGGGTAGGATGCGTGTGT 58.436 50.000 0.00 0.00 0.00 3.72
1656 1702 2.868044 GCTCATAAGGGTAGGATGCGTG 60.868 54.545 0.00 0.00 0.00 5.34
1657 1703 1.344763 GCTCATAAGGGTAGGATGCGT 59.655 52.381 0.00 0.00 0.00 5.24
1660 1706 4.503991 GGAAGTGCTCATAAGGGTAGGATG 60.504 50.000 0.00 0.00 0.00 3.51
1661 1707 3.648545 GGAAGTGCTCATAAGGGTAGGAT 59.351 47.826 0.00 0.00 0.00 3.24
1662 1708 3.039011 GGAAGTGCTCATAAGGGTAGGA 58.961 50.000 0.00 0.00 0.00 2.94
1664 1710 2.693591 TCGGAAGTGCTCATAAGGGTAG 59.306 50.000 0.00 0.00 0.00 3.18
1665 1711 2.693591 CTCGGAAGTGCTCATAAGGGTA 59.306 50.000 0.00 0.00 0.00 3.69
1667 1713 1.757118 TCTCGGAAGTGCTCATAAGGG 59.243 52.381 0.00 0.00 0.00 3.95
1668 1714 2.690497 TCTCTCGGAAGTGCTCATAAGG 59.310 50.000 0.00 0.00 0.00 2.69
1670 1716 3.129462 CAGTCTCTCGGAAGTGCTCATAA 59.871 47.826 0.00 0.00 0.00 1.90
1671 1717 2.685388 CAGTCTCTCGGAAGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
1672 1718 1.476085 CAGTCTCTCGGAAGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
1674 1720 1.132262 CTCAGTCTCTCGGAAGTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
1675 1721 1.173043 CTCAGTCTCTCGGAAGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
1676 1722 0.885196 ACTCAGTCTCTCGGAAGTGC 59.115 55.000 0.00 0.00 0.00 4.40
1677 1723 1.129624 CGACTCAGTCTCTCGGAAGTG 59.870 57.143 2.61 0.00 0.00 3.16
1678 1724 1.444836 CGACTCAGTCTCTCGGAAGT 58.555 55.000 2.61 0.00 0.00 3.01
1683 1729 1.300481 TATGCCGACTCAGTCTCTCG 58.700 55.000 2.61 0.00 0.00 4.04
1685 1731 2.937519 TGATATGCCGACTCAGTCTCT 58.062 47.619 2.61 0.00 0.00 3.10
1686 1732 3.505680 AGATGATATGCCGACTCAGTCTC 59.494 47.826 2.61 0.00 0.00 3.36
1687 1733 3.495331 AGATGATATGCCGACTCAGTCT 58.505 45.455 2.61 0.00 0.00 3.24
1688 1734 3.932545 AGATGATATGCCGACTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
1690 1736 4.248691 TCAAGATGATATGCCGACTCAG 57.751 45.455 0.00 0.00 0.00 3.35
1691 1737 4.879197 ATCAAGATGATATGCCGACTCA 57.121 40.909 0.00 0.00 34.88 3.41
1692 1738 7.840342 AAATATCAAGATGATATGCCGACTC 57.160 36.000 12.30 0.00 46.26 3.36
1693 1739 8.627208 AAAAATATCAAGATGATATGCCGACT 57.373 30.769 12.30 0.00 46.26 4.18
1694 1740 7.965107 GGAAAAATATCAAGATGATATGCCGAC 59.035 37.037 12.30 5.48 46.26 4.79
1695 1741 7.665145 TGGAAAAATATCAAGATGATATGCCGA 59.335 33.333 12.30 0.44 46.26 5.54
1696 1742 7.752239 GTGGAAAAATATCAAGATGATATGCCG 59.248 37.037 12.30 0.00 46.26 5.69
1697 1743 8.579006 TGTGGAAAAATATCAAGATGATATGCC 58.421 33.333 12.30 11.62 46.26 4.40
1698 1744 9.970395 TTGTGGAAAAATATCAAGATGATATGC 57.030 29.630 12.30 4.73 46.26 3.14
1703 1749 9.695526 CTTGTTTGTGGAAAAATATCAAGATGA 57.304 29.630 0.00 0.00 33.86 2.92
1704 1750 8.928733 CCTTGTTTGTGGAAAAATATCAAGATG 58.071 33.333 0.00 0.00 33.86 2.90
1705 1751 8.869109 TCCTTGTTTGTGGAAAAATATCAAGAT 58.131 29.630 0.00 0.00 33.86 2.40
1706 1752 8.243961 TCCTTGTTTGTGGAAAAATATCAAGA 57.756 30.769 0.00 0.00 33.86 3.02
1707 1753 8.928733 CATCCTTGTTTGTGGAAAAATATCAAG 58.071 33.333 0.00 0.00 35.81 3.02
1708 1754 8.428063 ACATCCTTGTTTGTGGAAAAATATCAA 58.572 29.630 0.00 0.00 35.81 2.57
1709 1755 7.871973 CACATCCTTGTTTGTGGAAAAATATCA 59.128 33.333 0.00 0.00 39.61 2.15
1710 1756 7.872483 ACACATCCTTGTTTGTGGAAAAATATC 59.128 33.333 7.83 0.00 45.88 1.63
1711 1757 7.734942 ACACATCCTTGTTTGTGGAAAAATAT 58.265 30.769 7.83 0.00 45.88 1.28
1712 1758 7.118496 ACACATCCTTGTTTGTGGAAAAATA 57.882 32.000 7.83 0.00 45.88 1.40
1713 1759 5.988287 ACACATCCTTGTTTGTGGAAAAAT 58.012 33.333 7.83 0.00 45.88 1.82
1714 1760 5.047021 TGACACATCCTTGTTTGTGGAAAAA 60.047 36.000 7.83 0.00 45.88 1.94
1805 1851 0.620556 CCACTGTCCAGGCATAGGTT 59.379 55.000 0.00 0.00 0.00 3.50
1831 1877 5.807520 TGAGCGTGAAGTTAATCTCTGATTC 59.192 40.000 0.00 0.00 0.00 2.52
1834 1880 4.486090 GTGAGCGTGAAGTTAATCTCTGA 58.514 43.478 0.00 0.00 0.00 3.27
1835 1881 3.614616 GGTGAGCGTGAAGTTAATCTCTG 59.385 47.826 0.00 0.00 0.00 3.35
1836 1882 3.258372 TGGTGAGCGTGAAGTTAATCTCT 59.742 43.478 0.00 0.00 0.00 3.10
1837 1883 3.368236 GTGGTGAGCGTGAAGTTAATCTC 59.632 47.826 0.00 0.00 0.00 2.75
1839 1885 3.064207 TGTGGTGAGCGTGAAGTTAATC 58.936 45.455 0.00 0.00 0.00 1.75
1840 1886 3.067106 CTGTGGTGAGCGTGAAGTTAAT 58.933 45.455 0.00 0.00 0.00 1.40
1843 1890 0.464036 TCTGTGGTGAGCGTGAAGTT 59.536 50.000 0.00 0.00 0.00 2.66
1851 1898 2.344950 CTGATCTGTTCTGTGGTGAGC 58.655 52.381 0.00 0.00 0.00 4.26
1872 1919 1.601759 CCAACACTGGTGCCTCCTG 60.602 63.158 0.17 1.52 38.00 3.86
1882 1929 2.148916 TCAAGAGTACGCCAACACTG 57.851 50.000 0.00 0.00 0.00 3.66
1891 1938 3.067461 CCTCTCCTGGAATCAAGAGTACG 59.933 52.174 0.00 0.00 34.09 3.67
1900 1954 2.110006 GCCGCCTCTCCTGGAATC 59.890 66.667 0.00 0.00 0.00 2.52
1962 2016 0.398318 GGTCTCCCTCATACCATGCC 59.602 60.000 0.00 0.00 33.28 4.40
1964 2018 0.034059 GCGGTCTCCCTCATACCATG 59.966 60.000 0.00 0.00 32.55 3.66
1965 2019 0.105453 AGCGGTCTCCCTCATACCAT 60.105 55.000 0.00 0.00 32.55 3.55
1976 2030 1.589716 AAAGCAATGGCAGCGGTCTC 61.590 55.000 0.00 0.00 44.61 3.36
1980 2034 2.125832 CCAAAGCAATGGCAGCGG 60.126 61.111 0.00 0.00 44.61 5.52
1992 2046 1.580845 CCTCCGCACTCAAGCCAAAG 61.581 60.000 0.00 0.00 0.00 2.77
2013 2067 4.087892 CCACCTGCTACTGCCGCT 62.088 66.667 0.00 0.00 38.71 5.52
2045 2099 2.366972 CCCTCCGTCCCTCCCAAT 60.367 66.667 0.00 0.00 0.00 3.16
2047 2101 4.075793 CTCCCTCCGTCCCTCCCA 62.076 72.222 0.00 0.00 0.00 4.37
2122 2177 3.594134 CTTGACTCCACCAGATGTCTTC 58.406 50.000 0.00 0.00 0.00 2.87
2123 2178 2.289945 GCTTGACTCCACCAGATGTCTT 60.290 50.000 0.00 0.00 0.00 3.01
2126 2181 1.059098 TGCTTGACTCCACCAGATGT 58.941 50.000 0.00 0.00 0.00 3.06
2127 2182 2.189594 TTGCTTGACTCCACCAGATG 57.810 50.000 0.00 0.00 0.00 2.90
2128 2183 2.373169 TCTTTGCTTGACTCCACCAGAT 59.627 45.455 0.00 0.00 0.00 2.90
2129 2184 1.768275 TCTTTGCTTGACTCCACCAGA 59.232 47.619 0.00 0.00 0.00 3.86
2169 2227 8.188139 CACAAACAACCTAATCCCATATAACAC 58.812 37.037 0.00 0.00 0.00 3.32
2174 2232 6.252995 ACACACAAACAACCTAATCCCATAT 58.747 36.000 0.00 0.00 0.00 1.78
2177 2235 3.904717 ACACACAAACAACCTAATCCCA 58.095 40.909 0.00 0.00 0.00 4.37
2184 2242 4.712122 AATCGAAACACACAAACAACCT 57.288 36.364 0.00 0.00 0.00 3.50
2200 2258 1.368641 CCCAGAATCACGCAAATCGA 58.631 50.000 0.00 0.00 41.67 3.59
2208 2266 0.745845 CTTCCAGGCCCAGAATCACG 60.746 60.000 0.00 0.00 0.00 4.35
2215 2273 0.610232 CTTGAACCTTCCAGGCCCAG 60.610 60.000 0.00 0.00 39.63 4.45
2216 2274 1.460255 CTTGAACCTTCCAGGCCCA 59.540 57.895 0.00 0.00 39.63 5.36
2223 2281 3.610911 CTGATACACCCTTGAACCTTCC 58.389 50.000 0.00 0.00 0.00 3.46
2228 2286 1.369625 CCGCTGATACACCCTTGAAC 58.630 55.000 0.00 0.00 0.00 3.18
2238 2296 0.685097 TAAGGATGCCCCGCTGATAC 59.315 55.000 0.00 0.00 40.87 2.24
2254 2312 8.367911 TCATAATACCCTGCTGATACTGTTAAG 58.632 37.037 0.00 0.00 0.00 1.85
2259 2317 8.627208 AATTTCATAATACCCTGCTGATACTG 57.373 34.615 0.00 0.00 0.00 2.74
2307 2365 3.309296 CCCCAGTACTGTATCAGTGGAT 58.691 50.000 21.18 0.00 45.01 3.41
2354 2412 5.911752 TGACAAATAACAAACCATTGCACT 58.088 33.333 0.00 0.00 40.34 4.40
2357 2415 5.931146 TGGATGACAAATAACAAACCATTGC 59.069 36.000 0.00 0.00 40.34 3.56
2388 2446 5.739161 GTCATTTTCGTAACAATCATGAGGC 59.261 40.000 0.09 0.00 0.00 4.70
2430 2488 7.472100 CGATTCCACTAATGAAGTTATCCTCCT 60.472 40.741 0.00 0.00 35.76 3.69
2455 2513 0.517316 GCAGTTTTCCTAGTGCCACG 59.483 55.000 0.00 0.00 38.30 4.94
2505 2563 9.521841 TGTATAATTTGGGAATGACAGTAAACA 57.478 29.630 0.00 0.00 0.00 2.83
2523 2581 4.082125 GCTAGCCATGCCCTTGTATAATT 58.918 43.478 2.29 0.00 0.00 1.40
2557 2615 8.118976 AGACATTGTCATTTGAACTCATCAAT 57.881 30.769 18.57 0.00 40.25 2.57
2559 2617 7.446319 AGAAGACATTGTCATTTGAACTCATCA 59.554 33.333 18.57 0.00 34.60 3.07
2657 2715 7.600752 GGAAAAGATTTATCTCGGTGATCCTAG 59.399 40.741 0.00 0.00 35.76 3.02
2673 2731 4.129380 GCAAACAGCAAGGGAAAAGATTT 58.871 39.130 0.00 0.00 44.79 2.17
2855 2913 8.531146 TCATCACTTGAATCATCTGTAACAGTA 58.469 33.333 0.00 0.00 32.61 2.74
2944 3002 5.762179 TTGTAAGTCATCCTCCACTGAAT 57.238 39.130 0.00 0.00 0.00 2.57
2952 3010 6.341316 TGTCAAGCTATTGTAAGTCATCCTC 58.659 40.000 0.00 0.00 37.68 3.71
2999 3057 4.370917 GGCAGAAAAGAATTGCACAGAAA 58.629 39.130 0.00 0.00 39.54 2.52
3012 3070 5.063438 TCTCGACAAAATATCGGCAGAAAAG 59.937 40.000 0.00 0.00 40.05 2.27
3066 3124 7.972277 CCTAGAAATCCAACATTGACATCAAAG 59.028 37.037 0.00 0.00 39.55 2.77
3156 3214 4.054671 GACTAGCATGGCTATGTTGACTC 58.945 47.826 12.04 0.00 40.54 3.36
3224 3282 2.836944 GGAACCTTTTCCGGTCTCG 58.163 57.895 0.00 0.00 42.20 4.04
3246 3304 0.541998 TCTTCCTCCAACAGCTCGGA 60.542 55.000 0.00 0.00 0.00 4.55
3248 3306 2.072298 CTTTCTTCCTCCAACAGCTCG 58.928 52.381 0.00 0.00 0.00 5.03
3251 3309 3.885901 ACTTTCTTTCTTCCTCCAACAGC 59.114 43.478 0.00 0.00 0.00 4.40
3341 3399 2.693267 AAGGACCTATGGTTTCGCTC 57.307 50.000 0.00 0.00 35.25 5.03
3349 3407 3.887621 TGAGACGAAAAGGACCTATGG 57.112 47.619 0.00 0.00 0.00 2.74
3389 3447 4.503123 CCAATACCTTATGTCATGAGCCGA 60.503 45.833 0.00 0.00 0.00 5.54
3390 3448 3.748048 CCAATACCTTATGTCATGAGCCG 59.252 47.826 0.00 0.00 0.00 5.52
3399 3458 7.048512 GTGAGACTTAAGCCAATACCTTATGT 58.951 38.462 1.29 0.00 36.47 2.29
3408 3467 2.028112 TCGCTGTGAGACTTAAGCCAAT 60.028 45.455 1.29 0.00 31.84 3.16
3423 3482 1.523758 CTAAAGGTTGCCTTCGCTGT 58.476 50.000 0.45 0.00 43.92 4.40
3426 3485 1.506718 GGCTAAAGGTTGCCTTCGC 59.493 57.895 0.45 7.13 43.92 4.70
3430 3489 1.002502 GACCGGCTAAAGGTTGCCT 60.003 57.895 0.00 0.00 46.42 4.75
3438 3497 0.035739 AAGGCTTTCGACCGGCTAAA 59.964 50.000 0.00 0.00 35.37 1.85
3447 3506 4.734398 TTACGGGTAATAAGGCTTTCGA 57.266 40.909 4.45 0.00 0.00 3.71
3448 3507 6.703165 AGTTATTACGGGTAATAAGGCTTTCG 59.297 38.462 19.19 3.43 44.16 3.46
3472 3531 1.805869 CTGCCTTCAGTTCTGTCCAG 58.194 55.000 0.00 0.00 35.61 3.86
3489 3577 7.451877 TCCCTATAAAGTATAGTCTCAAGGCTG 59.548 40.741 0.00 0.00 37.11 4.85
3491 3579 7.778185 TCCCTATAAAGTATAGTCTCAAGGC 57.222 40.000 2.49 0.00 37.11 4.35
3521 3609 9.817809 GGTTTTTAAAGATATTCTCCATTTCCC 57.182 33.333 0.00 0.00 0.00 3.97
3522 3610 9.817809 GGGTTTTTAAAGATATTCTCCATTTCC 57.182 33.333 0.00 0.00 0.00 3.13
3557 3645 2.572104 AGACCATGGACCCTAGTGAAAC 59.428 50.000 21.47 0.00 0.00 2.78
3591 3679 5.105473 TCGACTTTTTCAGAATAGGTCCGAT 60.105 40.000 9.37 0.00 0.00 4.18
3617 3705 7.759886 GCACTTGTGTGTCTCTACATAATTAGA 59.240 37.037 2.61 0.00 45.44 2.10
3634 3722 1.481772 ACCAAAGCAATGCACTTGTGT 59.518 42.857 8.35 7.92 37.18 3.72
3684 3773 3.371285 GGTTTCGAGTCTTACATTGCTCC 59.629 47.826 0.00 0.00 0.00 4.70
3692 3781 5.074584 AGATCCAAGGTTTCGAGTCTTAC 57.925 43.478 0.00 0.00 0.00 2.34
3699 3788 5.477607 TGAAGTAAGATCCAAGGTTTCGA 57.522 39.130 0.00 0.00 0.00 3.71
3701 3790 4.396478 GCCTGAAGTAAGATCCAAGGTTTC 59.604 45.833 0.00 0.00 0.00 2.78
3714 3803 6.663953 AGAGTACTAAGTGATGCCTGAAGTAA 59.336 38.462 0.00 0.00 0.00 2.24
3744 3833 9.046296 GGATATGTATTCACCTGTCAAGTAAAG 57.954 37.037 0.00 0.00 0.00 1.85
3783 3872 4.156008 CCTCCAGTACCAATTGCTGTAAAC 59.844 45.833 0.00 0.00 0.00 2.01
3846 3935 6.150140 CCTTTGGAATCGATTCTTGAAGAACT 59.850 38.462 31.32 0.00 37.00 3.01
3887 3976 5.106157 CCAACATAAGAGAACATGTGAACCC 60.106 44.000 0.00 0.00 35.59 4.11
4046 4142 1.244816 GGCCCTGTACAAACCAAGTC 58.755 55.000 0.00 0.00 0.00 3.01
4094 4190 7.222031 GGCCCGATTTTTACAGAAACATATTTC 59.778 37.037 0.00 0.00 44.02 2.17
4173 4269 7.665690 ACATCTAGGTTGCAGACTAGAATATG 58.334 38.462 24.35 20.88 46.12 1.78
4174 4270 7.847711 ACATCTAGGTTGCAGACTAGAATAT 57.152 36.000 24.35 14.55 46.12 1.28
4199 4295 7.330262 TCATTGAGTAAAGTATCTGCACATCA 58.670 34.615 0.00 0.00 0.00 3.07
4203 4299 7.038659 AGTCTCATTGAGTAAAGTATCTGCAC 58.961 38.462 13.23 0.17 0.00 4.57
4212 4308 9.390795 CAACAATCAAAGTCTCATTGAGTAAAG 57.609 33.333 13.23 2.41 39.92 1.85
4216 4312 6.949352 ACAACAATCAAAGTCTCATTGAGT 57.051 33.333 13.23 0.00 39.92 3.41
4217 4313 7.420002 TGAACAACAATCAAAGTCTCATTGAG 58.580 34.615 7.38 7.38 39.92 3.02
4219 4315 6.639686 CCTGAACAACAATCAAAGTCTCATTG 59.360 38.462 0.00 0.00 34.29 2.82
4230 4326 2.862541 CCTGGACCTGAACAACAATCA 58.137 47.619 0.00 0.00 0.00 2.57
4421 4518 1.514678 TTGTGTCGCATGGAGCCAAC 61.515 55.000 0.00 0.00 41.38 3.77
4454 4551 0.315251 GTTCACAAAAGCTCCAGCCC 59.685 55.000 0.00 0.00 43.38 5.19
4475 4583 6.323203 ACACAAAATGTTCTTCCTCTCATG 57.677 37.500 0.00 0.00 38.98 3.07
4530 4639 3.045601 ACATTGTAGTGCCTGTCTGAC 57.954 47.619 0.00 0.00 0.00 3.51
4631 4786 1.287425 GAGATTCGCGTCGGGAATTT 58.713 50.000 30.64 26.68 43.47 1.82
4641 4796 1.941734 GCAGGACTCGAGATTCGCG 60.942 63.158 21.68 0.00 40.21 5.87
4644 4799 0.529555 GGCAGCAGGACTCGAGATTC 60.530 60.000 21.68 7.00 0.00 2.52
4856 5027 6.425504 CGTTTATCTTGAGGCAGATGATTTC 58.574 40.000 0.00 0.00 35.08 2.17
4862 5033 2.159099 TCGCGTTTATCTTGAGGCAGAT 60.159 45.455 5.77 0.00 37.31 2.90
5066 5238 4.096231 GCAGTGCATGGACATGTAAATACA 59.904 41.667 20.21 0.00 40.80 2.29
5073 5245 2.086869 GTTAGCAGTGCATGGACATGT 58.913 47.619 20.21 0.00 40.80 3.21
5111 5283 0.676782 CCCCCGAGTGGTGAATTCAC 60.677 60.000 27.16 27.16 45.72 3.18
5112 5284 1.131303 ACCCCCGAGTGGTGAATTCA 61.131 55.000 3.38 3.38 33.94 2.57
5208 5380 4.274459 GTGAGCCATGATGATTTCTACCAC 59.726 45.833 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.