Multiple sequence alignment - TraesCS2D01G281100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G281100 chr2D 100.000 3743 0 0 1 3743 353349233 353352975 0.000000e+00 6913.0
1 TraesCS2D01G281100 chr2B 92.433 2709 89 35 340 3015 420202080 420204705 0.000000e+00 3760.0
2 TraesCS2D01G281100 chr2B 87.799 418 23 15 3062 3469 420204705 420205104 7.320000e-127 464.0
3 TraesCS2D01G281100 chr2B 89.205 352 12 4 1 342 420200985 420201320 2.080000e-112 416.0
4 TraesCS2D01G281100 chr2A 93.409 2200 78 26 340 2511 471815750 471817910 0.000000e+00 3197.0
5 TraesCS2D01G281100 chr2A 86.364 770 41 18 2739 3492 471818162 471818883 0.000000e+00 782.0
6 TraesCS2D01G281100 chr2A 94.556 349 8 2 1 338 471814646 471814994 2.560000e-146 529.0
7 TraesCS2D01G281100 chr2A 82.011 189 11 8 2508 2686 471817974 471818149 5.040000e-29 139.0
8 TraesCS2D01G281100 chr3D 82.019 317 51 5 1715 2028 537557642 537557329 7.970000e-67 265.0
9 TraesCS2D01G281100 chr3A 80.696 316 57 4 1715 2028 672869392 672869079 3.740000e-60 243.0
10 TraesCS2D01G281100 chr1A 86.364 66 9 0 3624 3689 363498169 363498234 5.190000e-09 73.1
11 TraesCS2D01G281100 chr7B 93.478 46 3 0 3487 3532 514520252 514520297 6.710000e-08 69.4
12 TraesCS2D01G281100 chr1D 95.238 42 2 0 3491 3532 374401400 374401441 2.410000e-07 67.6
13 TraesCS2D01G281100 chr4D 100.000 30 0 0 3499 3528 304424765 304424794 5.220000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G281100 chr2D 353349233 353352975 3742 False 6913.000000 6913 100.000000 1 3743 1 chr2D.!!$F1 3742
1 TraesCS2D01G281100 chr2B 420200985 420205104 4119 False 1546.666667 3760 89.812333 1 3469 3 chr2B.!!$F1 3468
2 TraesCS2D01G281100 chr2A 471814646 471818883 4237 False 1161.750000 3197 89.085000 1 3492 4 chr2A.!!$F1 3491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.037590 TTAGCCGTGTCCCAAATGCT 59.962 50.0 0.0 0.0 0.00 3.79 F
1107 1937 0.103937 GCATCGTGGAAGGAGAGGAG 59.896 60.0 0.0 0.0 32.39 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 2221 0.248215 CCCAGCGACGATTTGCATTC 60.248 55.0 0.0 0.0 34.03 2.67 R
3054 4024 0.030908 CACGGGAATCCTACTCGCTC 59.969 60.0 0.0 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 0.037590 TTAGCCGTGTCCCAAATGCT 59.962 50.000 0.00 0.00 0.00 3.79
201 202 1.488393 CTCCTTCCCATGTCCTTCCTC 59.512 57.143 0.00 0.00 0.00 3.71
314 330 7.690952 AATTAGCCTTGACCACGTTTTTATA 57.309 32.000 0.00 0.00 0.00 0.98
329 345 8.293867 CACGTTTTTATAACCCTTTGATTGAGA 58.706 33.333 0.00 0.00 0.00 3.27
338 354 6.838401 ACCCTTTGATTGAGATTAGGATCT 57.162 37.500 0.00 0.00 45.27 2.75
392 1190 3.907894 TGAAACGCCAAAACCATCTAC 57.092 42.857 0.00 0.00 0.00 2.59
396 1194 5.473846 TGAAACGCCAAAACCATCTACAATA 59.526 36.000 0.00 0.00 0.00 1.90
397 1195 6.151985 TGAAACGCCAAAACCATCTACAATAT 59.848 34.615 0.00 0.00 0.00 1.28
398 1196 7.337184 TGAAACGCCAAAACCATCTACAATATA 59.663 33.333 0.00 0.00 0.00 0.86
399 1197 7.633193 AACGCCAAAACCATCTACAATATAA 57.367 32.000 0.00 0.00 0.00 0.98
400 1198 7.817418 ACGCCAAAACCATCTACAATATAAT 57.183 32.000 0.00 0.00 0.00 1.28
401 1199 7.871853 ACGCCAAAACCATCTACAATATAATC 58.128 34.615 0.00 0.00 0.00 1.75
402 1200 7.040686 ACGCCAAAACCATCTACAATATAATCC 60.041 37.037 0.00 0.00 0.00 3.01
403 1201 7.040755 CGCCAAAACCATCTACAATATAATCCA 60.041 37.037 0.00 0.00 0.00 3.41
404 1202 8.299570 GCCAAAACCATCTACAATATAATCCAG 58.700 37.037 0.00 0.00 0.00 3.86
405 1203 8.299570 CCAAAACCATCTACAATATAATCCAGC 58.700 37.037 0.00 0.00 0.00 4.85
406 1204 8.849168 CAAAACCATCTACAATATAATCCAGCA 58.151 33.333 0.00 0.00 0.00 4.41
409 1207 7.977818 ACCATCTACAATATAATCCAGCAAGA 58.022 34.615 0.00 0.00 0.00 3.02
686 1501 7.335673 CCTTAACAAAAACACCAGAAACCAAAT 59.664 33.333 0.00 0.00 0.00 2.32
709 1524 2.200081 TGGGAGGAGGAGAAATCAAGG 58.800 52.381 0.00 0.00 0.00 3.61
837 1664 1.684049 CCTCTCCTTCCGGTCAGCT 60.684 63.158 0.00 0.00 0.00 4.24
887 1714 3.090532 AACGGAGGGGAGGGCATC 61.091 66.667 0.00 0.00 0.00 3.91
1012 1841 0.821517 TCTCGCCATTACGGACACAT 59.178 50.000 0.00 0.00 36.56 3.21
1104 1934 1.227089 CCGCATCGTGGAAGGAGAG 60.227 63.158 0.00 0.00 34.74 3.20
1105 1935 1.227089 CGCATCGTGGAAGGAGAGG 60.227 63.158 0.00 0.00 32.39 3.69
1106 1936 1.667154 CGCATCGTGGAAGGAGAGGA 61.667 60.000 0.00 0.00 32.39 3.71
1107 1937 0.103937 GCATCGTGGAAGGAGAGGAG 59.896 60.000 0.00 0.00 32.39 3.69
1108 1938 0.749649 CATCGTGGAAGGAGAGGAGG 59.250 60.000 0.00 0.00 32.39 4.30
1387 2220 7.308450 TGCCTACTCTGCTTTCTTATATGAT 57.692 36.000 0.00 0.00 0.00 2.45
1388 2221 7.157347 TGCCTACTCTGCTTTCTTATATGATG 58.843 38.462 0.00 0.00 0.00 3.07
1389 2222 7.015584 TGCCTACTCTGCTTTCTTATATGATGA 59.984 37.037 0.00 0.00 0.00 2.92
1415 2248 1.739338 ATCGTCGCTGGGATGGAGAC 61.739 60.000 13.18 0.00 32.24 3.36
1418 2251 4.899239 CGCTGGGATGGAGACGGC 62.899 72.222 0.00 0.00 0.00 5.68
1646 2479 0.388520 GGGCCTCGCACAAAATCAAC 60.389 55.000 0.84 0.00 0.00 3.18
1647 2480 0.729140 GGCCTCGCACAAAATCAACG 60.729 55.000 0.00 0.00 0.00 4.10
1648 2481 0.237235 GCCTCGCACAAAATCAACGA 59.763 50.000 0.00 0.00 0.00 3.85
1649 2482 1.135689 GCCTCGCACAAAATCAACGAT 60.136 47.619 0.00 0.00 31.59 3.73
1650 2483 2.508867 CCTCGCACAAAATCAACGATG 58.491 47.619 0.00 0.00 31.59 3.84
1651 2484 2.508867 CTCGCACAAAATCAACGATGG 58.491 47.619 0.00 0.00 31.59 3.51
1652 2485 1.198867 TCGCACAAAATCAACGATGGG 59.801 47.619 0.00 0.00 0.00 4.00
1707 2558 4.275443 CCCATGTTTCCATTGTTTTTGGTG 59.725 41.667 0.00 0.00 35.64 4.17
1711 2562 5.420409 TGTTTCCATTGTTTTTGGTGTACC 58.580 37.500 0.00 0.00 35.64 3.34
2093 2944 4.363990 CGGAGGCAGCACTCGTGT 62.364 66.667 0.00 0.00 38.39 4.49
2342 3199 0.038159 GCGTGGTGAACTACTGCTCT 60.038 55.000 6.55 0.00 0.00 4.09
2351 3208 1.226802 CTACTGCTCTCGCGCATGT 60.227 57.895 8.75 0.00 39.52 3.21
2511 3440 4.814294 CGCCGTGTCCTAGCACCC 62.814 72.222 0.00 0.00 36.08 4.61
2512 3441 4.814294 GCCGTGTCCTAGCACCCG 62.814 72.222 0.00 0.00 36.08 5.28
2513 3442 3.379445 CCGTGTCCTAGCACCCGT 61.379 66.667 0.00 0.00 36.08 5.28
2514 3443 2.654877 CGTGTCCTAGCACCCGTT 59.345 61.111 0.00 0.00 36.08 4.44
2515 3444 1.005394 CGTGTCCTAGCACCCGTTT 60.005 57.895 0.00 0.00 36.08 3.60
2556 3485 3.304726 GGCCAGTTCTTTCCTCTTTTTCG 60.305 47.826 0.00 0.00 0.00 3.46
2561 3490 5.050023 CAGTTCTTTCCTCTTTTTCGTCCTC 60.050 44.000 0.00 0.00 0.00 3.71
2610 3539 1.495951 GTCGCTGCGGTAAAGGTTG 59.504 57.895 23.03 0.00 0.00 3.77
2780 3717 0.928229 GTGACGTCGAAAGTTGTGCT 59.072 50.000 11.62 0.00 0.00 4.40
2781 3718 0.927537 TGACGTCGAAAGTTGTGCTG 59.072 50.000 11.62 0.00 0.00 4.41
2782 3719 0.383124 GACGTCGAAAGTTGTGCTGC 60.383 55.000 0.00 0.00 0.00 5.25
2812 3749 0.468029 CTTTCCTGGTGCCCAACTGT 60.468 55.000 0.00 0.00 30.80 3.55
2828 3765 2.433318 GTCCGTCTGCCACTCTGC 60.433 66.667 0.00 0.00 0.00 4.26
2906 3844 4.359706 GCGTTTCCACTTTGAAGTTCAAT 58.640 39.130 18.69 2.48 36.11 2.57
2908 3846 5.398416 GCGTTTCCACTTTGAAGTTCAATAC 59.602 40.000 18.69 7.92 36.11 1.89
2982 3931 2.494918 CGATCCCGTGACCAGGAC 59.505 66.667 0.00 0.00 34.20 3.85
3025 3995 9.611284 GAAAATGAAAATAAATTGAAACCCAGC 57.389 29.630 0.00 0.00 0.00 4.85
3026 3996 6.966435 ATGAAAATAAATTGAAACCCAGCG 57.034 33.333 0.00 0.00 0.00 5.18
3027 3997 5.233988 TGAAAATAAATTGAAACCCAGCGG 58.766 37.500 0.00 0.00 0.00 5.52
3040 4010 1.876322 CCAGCGGGAAATCTCATCTC 58.124 55.000 0.00 0.00 35.59 2.75
3041 4011 1.139654 CCAGCGGGAAATCTCATCTCA 59.860 52.381 0.00 0.00 35.59 3.27
3042 4012 2.420547 CCAGCGGGAAATCTCATCTCAA 60.421 50.000 0.00 0.00 35.59 3.02
3043 4013 2.871022 CAGCGGGAAATCTCATCTCAAG 59.129 50.000 0.00 0.00 0.00 3.02
3044 4014 2.158842 AGCGGGAAATCTCATCTCAAGG 60.159 50.000 0.00 0.00 0.00 3.61
3045 4015 2.158900 GCGGGAAATCTCATCTCAAGGA 60.159 50.000 0.00 0.00 0.00 3.36
3046 4016 3.682718 GCGGGAAATCTCATCTCAAGGAA 60.683 47.826 0.00 0.00 0.00 3.36
3047 4017 4.517285 CGGGAAATCTCATCTCAAGGAAA 58.483 43.478 0.00 0.00 0.00 3.13
3048 4018 4.333926 CGGGAAATCTCATCTCAAGGAAAC 59.666 45.833 0.00 0.00 0.00 2.78
3049 4019 5.256474 GGGAAATCTCATCTCAAGGAAACA 58.744 41.667 0.00 0.00 0.00 2.83
3050 4020 5.711976 GGGAAATCTCATCTCAAGGAAACAA 59.288 40.000 0.00 0.00 0.00 2.83
3051 4021 6.127786 GGGAAATCTCATCTCAAGGAAACAAG 60.128 42.308 0.00 0.00 0.00 3.16
3052 4022 6.432472 GGAAATCTCATCTCAAGGAAACAAGT 59.568 38.462 0.00 0.00 0.00 3.16
3053 4023 7.607991 GGAAATCTCATCTCAAGGAAACAAGTA 59.392 37.037 0.00 0.00 0.00 2.24
3054 4024 8.558973 AAATCTCATCTCAAGGAAACAAGTAG 57.441 34.615 0.00 0.00 0.00 2.57
3055 4025 6.918067 TCTCATCTCAAGGAAACAAGTAGA 57.082 37.500 0.00 0.00 0.00 2.59
3056 4026 6.929625 TCTCATCTCAAGGAAACAAGTAGAG 58.070 40.000 0.00 0.00 0.00 2.43
3057 4027 5.482908 TCATCTCAAGGAAACAAGTAGAGC 58.517 41.667 0.00 0.00 0.00 4.09
3058 4028 3.914312 TCTCAAGGAAACAAGTAGAGCG 58.086 45.455 0.00 0.00 0.00 5.03
3059 4029 3.572682 TCTCAAGGAAACAAGTAGAGCGA 59.427 43.478 0.00 0.00 0.00 4.93
3060 4030 3.914312 TCAAGGAAACAAGTAGAGCGAG 58.086 45.455 0.00 0.00 0.00 5.03
3061 4031 3.321111 TCAAGGAAACAAGTAGAGCGAGT 59.679 43.478 0.00 0.00 0.00 4.18
3197 4168 3.427503 GCCTGTCAAACACAAATATCCGG 60.428 47.826 0.00 0.00 33.31 5.14
3198 4169 3.427503 CCTGTCAAACACAAATATCCGGC 60.428 47.826 0.00 0.00 33.31 6.13
3199 4170 3.417101 TGTCAAACACAAATATCCGGCT 58.583 40.909 0.00 0.00 29.30 5.52
3200 4171 3.190327 TGTCAAACACAAATATCCGGCTG 59.810 43.478 0.00 0.00 29.30 4.85
3201 4172 2.163412 TCAAACACAAATATCCGGCTGC 59.837 45.455 0.00 0.00 0.00 5.25
3202 4173 2.128771 AACACAAATATCCGGCTGCT 57.871 45.000 0.00 0.00 0.00 4.24
3234 4205 5.684550 AGTGTGTGTAATCGCGATAGATA 57.315 39.130 24.00 8.58 39.76 1.98
3235 4206 5.690816 AGTGTGTGTAATCGCGATAGATAG 58.309 41.667 24.00 0.00 39.76 2.08
3236 4207 5.469084 AGTGTGTGTAATCGCGATAGATAGA 59.531 40.000 24.00 7.05 39.76 1.98
3237 4208 6.149640 AGTGTGTGTAATCGCGATAGATAGAT 59.850 38.462 24.00 7.27 39.76 1.98
3254 4225 2.292794 GATTCGGCGCTAGTGGACCA 62.293 60.000 7.64 0.00 0.00 4.02
3305 4278 0.929824 GAACGTGTGCATGTGTGTGC 60.930 55.000 0.00 0.00 45.25 4.57
3313 4286 4.033776 ATGTGTGTGCGGGAGGGG 62.034 66.667 0.00 0.00 0.00 4.79
3341 4317 3.177249 GACGCGTCCTTGTACCGC 61.177 66.667 28.61 0.00 43.74 5.68
3363 4339 2.501261 GTTTAACTTCTTGCCGAGGGT 58.499 47.619 0.00 0.00 0.00 4.34
3366 4342 1.349067 AACTTCTTGCCGAGGGTAGT 58.651 50.000 0.00 0.00 0.00 2.73
3388 4364 1.468565 GCAGCGAGTTGGATGTACGTA 60.469 52.381 0.00 0.00 0.00 3.57
3390 4366 3.043586 CAGCGAGTTGGATGTACGTATC 58.956 50.000 0.00 0.00 0.00 2.24
3392 4368 4.024302 CAGCGAGTTGGATGTACGTATCTA 60.024 45.833 0.00 0.00 0.00 1.98
3399 4375 8.405418 AGTTGGATGTACGTATCTATGTATGT 57.595 34.615 0.00 0.00 31.09 2.29
3404 4380 8.350722 GGATGTACGTATCTATGTATGTATGGG 58.649 40.741 0.00 0.00 30.98 4.00
3475 4455 5.651387 TCCTCGTAGAATCATCCATCATC 57.349 43.478 0.00 0.00 34.09 2.92
3492 4472 7.844009 TCCATCATCGTTAGTTAGTTTTAGGT 58.156 34.615 0.00 0.00 0.00 3.08
3493 4473 7.762615 TCCATCATCGTTAGTTAGTTTTAGGTG 59.237 37.037 0.00 0.00 0.00 4.00
3494 4474 6.956299 TCATCGTTAGTTAGTTTTAGGTGC 57.044 37.500 0.00 0.00 0.00 5.01
3495 4475 5.574055 TCATCGTTAGTTAGTTTTAGGTGCG 59.426 40.000 0.00 0.00 0.00 5.34
3496 4476 4.870363 TCGTTAGTTAGTTTTAGGTGCGT 58.130 39.130 0.00 0.00 0.00 5.24
3497 4477 4.681025 TCGTTAGTTAGTTTTAGGTGCGTG 59.319 41.667 0.00 0.00 0.00 5.34
3498 4478 4.664891 CGTTAGTTAGTTTTAGGTGCGTGC 60.665 45.833 0.00 0.00 0.00 5.34
3499 4479 3.121738 AGTTAGTTTTAGGTGCGTGCT 57.878 42.857 0.00 0.00 0.00 4.40
3500 4480 4.261578 AGTTAGTTTTAGGTGCGTGCTA 57.738 40.909 0.00 0.00 0.00 3.49
3501 4481 3.992427 AGTTAGTTTTAGGTGCGTGCTAC 59.008 43.478 0.00 0.00 0.00 3.58
3502 4482 1.425412 AGTTTTAGGTGCGTGCTACG 58.575 50.000 4.61 4.61 45.88 3.51
3520 4500 4.189188 CGTCCGCCGGTCGATCTT 62.189 66.667 17.69 0.00 41.67 2.40
3521 4501 2.183555 GTCCGCCGGTCGATCTTT 59.816 61.111 17.96 0.00 41.67 2.52
3522 4502 1.447314 GTCCGCCGGTCGATCTTTT 60.447 57.895 17.96 0.00 41.67 2.27
3523 4503 1.017701 GTCCGCCGGTCGATCTTTTT 61.018 55.000 17.96 0.00 41.67 1.94
3524 4504 0.531657 TCCGCCGGTCGATCTTTTTA 59.468 50.000 17.96 0.00 41.67 1.52
3525 4505 1.067000 TCCGCCGGTCGATCTTTTTAA 60.067 47.619 17.96 0.00 41.67 1.52
3526 4506 1.733360 CCGCCGGTCGATCTTTTTAAA 59.267 47.619 17.96 0.00 41.67 1.52
3527 4507 2.160022 CCGCCGGTCGATCTTTTTAAAA 59.840 45.455 17.96 0.00 41.67 1.52
3528 4508 3.158268 CGCCGGTCGATCTTTTTAAAAC 58.842 45.455 12.11 0.00 41.67 2.43
3529 4509 3.364167 CGCCGGTCGATCTTTTTAAAACA 60.364 43.478 12.11 0.00 41.67 2.83
3530 4510 4.670735 CGCCGGTCGATCTTTTTAAAACAT 60.671 41.667 12.11 0.00 41.67 2.71
3531 4511 4.791676 GCCGGTCGATCTTTTTAAAACATC 59.208 41.667 1.90 4.80 0.00 3.06
3532 4512 5.329493 CCGGTCGATCTTTTTAAAACATCC 58.671 41.667 0.00 0.00 0.00 3.51
3533 4513 5.019498 CGGTCGATCTTTTTAAAACATCCG 58.981 41.667 0.00 5.13 0.00 4.18
3534 4514 5.163933 CGGTCGATCTTTTTAAAACATCCGA 60.164 40.000 0.00 5.52 34.76 4.55
3535 4515 6.604930 GGTCGATCTTTTTAAAACATCCGAA 58.395 36.000 0.00 0.00 0.00 4.30
3536 4516 7.079475 GGTCGATCTTTTTAAAACATCCGAAA 58.921 34.615 0.00 0.00 0.00 3.46
3537 4517 7.060289 GGTCGATCTTTTTAAAACATCCGAAAC 59.940 37.037 0.00 2.40 0.00 2.78
3538 4518 7.588488 GTCGATCTTTTTAAAACATCCGAAACA 59.412 33.333 0.00 0.00 0.00 2.83
3539 4519 8.293867 TCGATCTTTTTAAAACATCCGAAACAT 58.706 29.630 0.00 0.00 0.00 2.71
3540 4520 9.549509 CGATCTTTTTAAAACATCCGAAACATA 57.450 29.630 0.00 0.00 0.00 2.29
3542 4522 9.855021 ATCTTTTTAAAACATCCGAAACATAGG 57.145 29.630 0.00 0.00 0.00 2.57
3543 4523 7.810759 TCTTTTTAAAACATCCGAAACATAGGC 59.189 33.333 0.00 0.00 0.00 3.93
3544 4524 5.570234 TTAAAACATCCGAAACATAGGCC 57.430 39.130 0.00 0.00 0.00 5.19
3545 4525 2.799126 AACATCCGAAACATAGGCCA 57.201 45.000 5.01 0.00 0.00 5.36
3546 4526 3.297134 AACATCCGAAACATAGGCCAT 57.703 42.857 5.01 0.00 0.00 4.40
3547 4527 2.851195 ACATCCGAAACATAGGCCATC 58.149 47.619 5.01 0.00 0.00 3.51
3548 4528 1.800586 CATCCGAAACATAGGCCATCG 59.199 52.381 5.01 4.81 0.00 3.84
3549 4529 0.531974 TCCGAAACATAGGCCATCGC 60.532 55.000 5.01 0.00 32.46 4.58
3550 4530 1.564622 CGAAACATAGGCCATCGCG 59.435 57.895 5.01 0.00 35.02 5.87
3551 4531 0.874175 CGAAACATAGGCCATCGCGA 60.874 55.000 13.09 13.09 35.02 5.87
3552 4532 0.861837 GAAACATAGGCCATCGCGAG 59.138 55.000 16.66 2.31 35.02 5.03
3553 4533 1.160329 AAACATAGGCCATCGCGAGC 61.160 55.000 16.66 13.83 35.02 5.03
3559 4539 3.248029 GCCATCGCGAGCCATTAG 58.752 61.111 16.66 0.00 0.00 1.73
3560 4540 1.300931 GCCATCGCGAGCCATTAGA 60.301 57.895 16.66 0.00 0.00 2.10
3561 4541 0.671781 GCCATCGCGAGCCATTAGAT 60.672 55.000 16.66 0.00 0.00 1.98
3562 4542 1.800805 CCATCGCGAGCCATTAGATT 58.199 50.000 16.66 0.00 0.00 2.40
3563 4543 2.146342 CCATCGCGAGCCATTAGATTT 58.854 47.619 16.66 0.00 0.00 2.17
3564 4544 2.096069 CCATCGCGAGCCATTAGATTTG 60.096 50.000 16.66 2.68 0.00 2.32
3565 4545 2.595124 TCGCGAGCCATTAGATTTGA 57.405 45.000 3.71 0.00 0.00 2.69
3566 4546 2.201732 TCGCGAGCCATTAGATTTGAC 58.798 47.619 3.71 0.00 0.00 3.18
3567 4547 2.159099 TCGCGAGCCATTAGATTTGACT 60.159 45.455 3.71 0.00 0.00 3.41
3568 4548 3.067601 TCGCGAGCCATTAGATTTGACTA 59.932 43.478 3.71 0.00 0.00 2.59
3569 4549 3.802139 CGCGAGCCATTAGATTTGACTAA 59.198 43.478 0.00 0.00 36.89 2.24
3570 4550 4.449068 CGCGAGCCATTAGATTTGACTAAT 59.551 41.667 0.00 0.00 41.78 1.73
3571 4551 5.388890 CGCGAGCCATTAGATTTGACTAATC 60.389 44.000 0.00 1.83 39.92 1.75
3572 4552 5.466728 GCGAGCCATTAGATTTGACTAATCA 59.533 40.000 11.41 0.00 44.25 2.57
3573 4553 6.017934 GCGAGCCATTAGATTTGACTAATCAA 60.018 38.462 11.41 5.17 44.25 2.57
3574 4554 7.571026 CGAGCCATTAGATTTGACTAATCAAG 58.429 38.462 11.41 0.05 45.54 3.02
3575 4555 7.225538 CGAGCCATTAGATTTGACTAATCAAGT 59.774 37.037 11.41 0.00 45.54 3.16
3576 4556 8.218338 AGCCATTAGATTTGACTAATCAAGTG 57.782 34.615 11.41 6.73 45.54 3.16
3577 4557 7.284034 AGCCATTAGATTTGACTAATCAAGTGG 59.716 37.037 11.41 14.00 45.54 4.00
3578 4558 7.420800 CCATTAGATTTGACTAATCAAGTGGC 58.579 38.462 11.41 0.00 45.54 5.01
3579 4559 7.420800 CATTAGATTTGACTAATCAAGTGGCC 58.579 38.462 11.41 0.00 45.54 5.36
3580 4560 3.941483 AGATTTGACTAATCAAGTGGCCG 59.059 43.478 11.41 0.00 45.54 6.13
3581 4561 3.410631 TTTGACTAATCAAGTGGCCGA 57.589 42.857 0.00 0.00 45.54 5.54
3582 4562 3.410631 TTGACTAATCAAGTGGCCGAA 57.589 42.857 0.00 0.00 40.01 4.30
3583 4563 3.627395 TGACTAATCAAGTGGCCGAAT 57.373 42.857 0.00 0.00 39.07 3.34
3584 4564 3.270027 TGACTAATCAAGTGGCCGAATG 58.730 45.455 0.00 0.00 39.07 2.67
3585 4565 3.270877 GACTAATCAAGTGGCCGAATGT 58.729 45.455 0.00 0.00 39.07 2.71
3586 4566 3.686016 ACTAATCAAGTGGCCGAATGTT 58.314 40.909 0.00 0.00 36.93 2.71
3587 4567 4.839121 ACTAATCAAGTGGCCGAATGTTA 58.161 39.130 0.00 0.00 36.93 2.41
3588 4568 4.634443 ACTAATCAAGTGGCCGAATGTTAC 59.366 41.667 0.00 0.00 36.93 2.50
3589 4569 1.816074 TCAAGTGGCCGAATGTTACC 58.184 50.000 0.00 0.00 0.00 2.85
3590 4570 0.446222 CAAGTGGCCGAATGTTACCG 59.554 55.000 0.00 0.00 0.00 4.02
3591 4571 0.035739 AAGTGGCCGAATGTTACCGT 59.964 50.000 0.00 0.00 0.00 4.83
3592 4572 0.390735 AGTGGCCGAATGTTACCGTC 60.391 55.000 0.00 0.00 0.00 4.79
3593 4573 1.078988 TGGCCGAATGTTACCGTCC 60.079 57.895 0.00 0.00 0.00 4.79
3594 4574 1.078988 GGCCGAATGTTACCGTCCA 60.079 57.895 0.00 0.00 0.00 4.02
3595 4575 1.363885 GGCCGAATGTTACCGTCCAC 61.364 60.000 0.00 0.00 0.00 4.02
3596 4576 1.363885 GCCGAATGTTACCGTCCACC 61.364 60.000 0.00 0.00 0.00 4.61
3597 4577 0.037139 CCGAATGTTACCGTCCACCA 60.037 55.000 0.00 0.00 0.00 4.17
3598 4578 1.073177 CGAATGTTACCGTCCACCAC 58.927 55.000 0.00 0.00 0.00 4.16
3599 4579 1.337447 CGAATGTTACCGTCCACCACT 60.337 52.381 0.00 0.00 0.00 4.00
3600 4580 2.073816 GAATGTTACCGTCCACCACTG 58.926 52.381 0.00 0.00 0.00 3.66
3601 4581 0.321298 ATGTTACCGTCCACCACTGC 60.321 55.000 0.00 0.00 0.00 4.40
3602 4582 1.070105 GTTACCGTCCACCACTGCA 59.930 57.895 0.00 0.00 0.00 4.41
3603 4583 0.533308 GTTACCGTCCACCACTGCAA 60.533 55.000 0.00 0.00 0.00 4.08
3604 4584 0.533308 TTACCGTCCACCACTGCAAC 60.533 55.000 0.00 0.00 0.00 4.17
3605 4585 1.687297 TACCGTCCACCACTGCAACA 61.687 55.000 0.00 0.00 0.00 3.33
3606 4586 2.542907 CCGTCCACCACTGCAACAC 61.543 63.158 0.00 0.00 0.00 3.32
3607 4587 1.817520 CGTCCACCACTGCAACACA 60.818 57.895 0.00 0.00 0.00 3.72
3608 4588 1.165907 CGTCCACCACTGCAACACAT 61.166 55.000 0.00 0.00 0.00 3.21
3609 4589 0.311790 GTCCACCACTGCAACACATG 59.688 55.000 0.00 0.00 0.00 3.21
3626 4606 8.838452 CAACACATGCATTGTTGTAAAAATTT 57.162 26.923 28.11 6.10 45.85 1.82
3627 4607 8.945930 CAACACATGCATTGTTGTAAAAATTTC 58.054 29.630 28.11 0.00 45.85 2.17
3628 4608 8.436046 ACACATGCATTGTTGTAAAAATTTCT 57.564 26.923 0.00 0.00 36.00 2.52
3629 4609 8.891720 ACACATGCATTGTTGTAAAAATTTCTT 58.108 25.926 0.00 0.00 36.00 2.52
3630 4610 9.160576 CACATGCATTGTTGTAAAAATTTCTTG 57.839 29.630 0.00 0.00 36.00 3.02
3631 4611 7.856894 ACATGCATTGTTGTAAAAATTTCTTGC 59.143 29.630 0.00 0.00 33.74 4.01
3632 4612 7.312657 TGCATTGTTGTAAAAATTTCTTGCA 57.687 28.000 0.00 0.00 33.28 4.08
3633 4613 7.755591 TGCATTGTTGTAAAAATTTCTTGCAA 58.244 26.923 0.00 0.00 32.82 4.08
3634 4614 7.695618 TGCATTGTTGTAAAAATTTCTTGCAAC 59.304 29.630 23.54 23.54 44.66 4.17
3638 4618 7.931065 GTTGTAAAAATTTCTTGCAACACAC 57.069 32.000 24.38 11.26 44.17 3.82
3639 4619 7.513968 GTTGTAAAAATTTCTTGCAACACACA 58.486 30.769 24.38 8.76 44.17 3.72
3640 4620 7.840342 TGTAAAAATTTCTTGCAACACACAT 57.160 28.000 0.00 0.00 0.00 3.21
3641 4621 7.904094 TGTAAAAATTTCTTGCAACACACATC 58.096 30.769 0.00 0.00 0.00 3.06
3642 4622 7.763528 TGTAAAAATTTCTTGCAACACACATCT 59.236 29.630 0.00 0.00 0.00 2.90
3643 4623 7.614124 AAAAATTTCTTGCAACACACATCTT 57.386 28.000 0.00 0.00 0.00 2.40
3644 4624 6.592798 AAATTTCTTGCAACACACATCTTG 57.407 33.333 0.00 0.00 0.00 3.02
3645 4625 4.717233 TTTCTTGCAACACACATCTTGT 57.283 36.364 0.00 0.00 39.97 3.16
3646 4626 4.717233 TTCTTGCAACACACATCTTGTT 57.283 36.364 0.00 0.00 35.67 2.83
3651 4631 3.696281 CAACACACATCTTGTTGCAGA 57.304 42.857 2.50 0.00 45.36 4.26
3652 4632 4.233123 CAACACACATCTTGTTGCAGAT 57.767 40.909 2.50 0.00 45.36 2.90
3653 4633 4.613944 CAACACACATCTTGTTGCAGATT 58.386 39.130 2.50 0.00 45.36 2.40
3654 4634 4.494350 ACACACATCTTGTTGCAGATTC 57.506 40.909 0.00 0.00 35.67 2.52
3655 4635 4.139786 ACACACATCTTGTTGCAGATTCT 58.860 39.130 0.00 0.00 35.67 2.40
3656 4636 4.581824 ACACACATCTTGTTGCAGATTCTT 59.418 37.500 0.00 0.00 35.67 2.52
3657 4637 5.068198 ACACACATCTTGTTGCAGATTCTTT 59.932 36.000 0.00 0.00 35.67 2.52
3658 4638 5.981315 CACACATCTTGTTGCAGATTCTTTT 59.019 36.000 0.00 0.00 35.67 2.27
3659 4639 5.981315 ACACATCTTGTTGCAGATTCTTTTG 59.019 36.000 0.00 0.00 33.09 2.44
3660 4640 4.986659 ACATCTTGTTGCAGATTCTTTTGC 59.013 37.500 0.00 0.00 40.67 3.68
3668 4648 3.551082 TGCAGATTCTTTTGCAACAAACG 59.449 39.130 0.00 0.00 46.42 3.60
3669 4649 3.551485 GCAGATTCTTTTGCAACAAACGT 59.449 39.130 0.00 0.00 40.02 3.99
3670 4650 4.317348 GCAGATTCTTTTGCAACAAACGTC 60.317 41.667 0.00 0.00 40.02 4.34
3671 4651 5.036737 CAGATTCTTTTGCAACAAACGTCT 58.963 37.500 0.00 0.00 0.00 4.18
3672 4652 5.516339 CAGATTCTTTTGCAACAAACGTCTT 59.484 36.000 0.00 0.00 0.00 3.01
3673 4653 5.516339 AGATTCTTTTGCAACAAACGTCTTG 59.484 36.000 0.00 8.35 0.00 3.02
3674 4654 4.167554 TCTTTTGCAACAAACGTCTTGT 57.832 36.364 0.00 9.39 0.00 3.16
3675 4655 4.551388 TCTTTTGCAACAAACGTCTTGTT 58.449 34.783 17.44 17.44 44.59 2.83
3682 4662 4.370364 AACAAACGTCTTGTTGCAGATT 57.630 36.364 20.47 3.36 40.84 2.40
3683 4663 4.370364 ACAAACGTCTTGTTGCAGATTT 57.630 36.364 9.39 0.00 40.84 2.17
3684 4664 4.351192 ACAAACGTCTTGTTGCAGATTTC 58.649 39.130 9.39 0.00 40.84 2.17
3685 4665 4.096382 ACAAACGTCTTGTTGCAGATTTCT 59.904 37.500 9.39 0.00 40.84 2.52
3686 4666 4.900635 AACGTCTTGTTGCAGATTTCTT 57.099 36.364 0.00 0.00 40.00 2.52
3687 4667 4.900635 ACGTCTTGTTGCAGATTTCTTT 57.099 36.364 0.00 0.00 0.00 2.52
3688 4668 5.248870 ACGTCTTGTTGCAGATTTCTTTT 57.751 34.783 0.00 0.00 0.00 2.27
3689 4669 5.036737 ACGTCTTGTTGCAGATTTCTTTTG 58.963 37.500 0.00 0.00 0.00 2.44
3690 4670 5.036737 CGTCTTGTTGCAGATTTCTTTTGT 58.963 37.500 0.00 0.00 0.00 2.83
3691 4671 6.183360 ACGTCTTGTTGCAGATTTCTTTTGTA 60.183 34.615 0.00 0.00 0.00 2.41
3692 4672 6.690957 CGTCTTGTTGCAGATTTCTTTTGTAA 59.309 34.615 0.00 0.00 0.00 2.41
3693 4673 7.305418 CGTCTTGTTGCAGATTTCTTTTGTAAC 60.305 37.037 0.00 0.00 37.75 2.50
3694 4674 7.702348 GTCTTGTTGCAGATTTCTTTTGTAACT 59.298 33.333 6.31 0.00 37.98 2.24
3695 4675 8.898761 TCTTGTTGCAGATTTCTTTTGTAACTA 58.101 29.630 6.31 0.00 37.98 2.24
3696 4676 9.515020 CTTGTTGCAGATTTCTTTTGTAACTAA 57.485 29.630 6.31 0.51 37.98 2.24
3697 4677 8.850454 TGTTGCAGATTTCTTTTGTAACTAAC 57.150 30.769 6.31 0.00 37.98 2.34
3698 4678 8.682710 TGTTGCAGATTTCTTTTGTAACTAACT 58.317 29.630 6.31 0.00 37.98 2.24
3701 4681 9.555727 TGCAGATTTCTTTTGTAACTAACTACT 57.444 29.630 0.00 0.00 0.00 2.57
3707 4687 9.777575 TTTCTTTTGTAACTAACTACTTGTTGC 57.222 29.630 0.00 0.00 39.55 4.17
3708 4688 7.623770 TCTTTTGTAACTAACTACTTGTTGCG 58.376 34.615 0.00 0.00 39.55 4.85
3709 4689 5.910637 TTGTAACTAACTACTTGTTGCGG 57.089 39.130 0.00 0.00 39.55 5.69
3710 4690 4.309099 TGTAACTAACTACTTGTTGCGGG 58.691 43.478 0.00 0.00 39.55 6.13
3711 4691 3.756933 AACTAACTACTTGTTGCGGGA 57.243 42.857 0.00 0.00 39.55 5.14
3712 4692 3.975168 ACTAACTACTTGTTGCGGGAT 57.025 42.857 0.00 0.00 39.55 3.85
3713 4693 4.281898 ACTAACTACTTGTTGCGGGATT 57.718 40.909 0.00 0.00 39.55 3.01
3714 4694 5.410355 ACTAACTACTTGTTGCGGGATTA 57.590 39.130 0.00 0.00 39.55 1.75
3715 4695 5.985911 ACTAACTACTTGTTGCGGGATTAT 58.014 37.500 0.00 0.00 39.55 1.28
3716 4696 6.412214 ACTAACTACTTGTTGCGGGATTATT 58.588 36.000 0.00 0.00 39.55 1.40
3717 4697 6.882678 ACTAACTACTTGTTGCGGGATTATTT 59.117 34.615 0.00 0.00 39.55 1.40
3718 4698 5.813080 ACTACTTGTTGCGGGATTATTTC 57.187 39.130 0.00 0.00 0.00 2.17
3719 4699 5.497474 ACTACTTGTTGCGGGATTATTTCT 58.503 37.500 0.00 0.00 0.00 2.52
3720 4700 6.646267 ACTACTTGTTGCGGGATTATTTCTA 58.354 36.000 0.00 0.00 0.00 2.10
3721 4701 5.813080 ACTTGTTGCGGGATTATTTCTAC 57.187 39.130 0.00 0.00 0.00 2.59
3722 4702 5.250200 ACTTGTTGCGGGATTATTTCTACA 58.750 37.500 0.00 0.00 0.00 2.74
3723 4703 5.708230 ACTTGTTGCGGGATTATTTCTACAA 59.292 36.000 0.00 0.00 0.00 2.41
3724 4704 6.207810 ACTTGTTGCGGGATTATTTCTACAAA 59.792 34.615 0.00 0.00 0.00 2.83
3725 4705 6.576662 TGTTGCGGGATTATTTCTACAAAA 57.423 33.333 0.00 0.00 0.00 2.44
3726 4706 6.383415 TGTTGCGGGATTATTTCTACAAAAC 58.617 36.000 0.00 0.00 0.00 2.43
3727 4707 5.224562 TGCGGGATTATTTCTACAAAACG 57.775 39.130 0.00 0.00 0.00 3.60
3728 4708 4.936411 TGCGGGATTATTTCTACAAAACGA 59.064 37.500 0.00 0.00 0.00 3.85
3729 4709 5.411977 TGCGGGATTATTTCTACAAAACGAA 59.588 36.000 0.00 0.00 0.00 3.85
3730 4710 6.072618 TGCGGGATTATTTCTACAAAACGAAA 60.073 34.615 0.00 0.00 34.08 3.46
3731 4711 6.249893 GCGGGATTATTTCTACAAAACGAAAC 59.750 38.462 0.00 0.00 32.55 2.78
3732 4712 7.524065 CGGGATTATTTCTACAAAACGAAACT 58.476 34.615 0.00 0.00 32.55 2.66
3733 4713 7.480542 CGGGATTATTTCTACAAAACGAAACTG 59.519 37.037 0.00 0.00 32.55 3.16
3734 4714 7.272731 GGGATTATTTCTACAAAACGAAACTGC 59.727 37.037 0.00 0.00 32.55 4.40
3735 4715 7.806014 GGATTATTTCTACAAAACGAAACTGCA 59.194 33.333 0.00 0.00 32.55 4.41
3736 4716 9.341899 GATTATTTCTACAAAACGAAACTGCAT 57.658 29.630 0.00 0.00 32.55 3.96
3737 4717 8.722342 TTATTTCTACAAAACGAAACTGCATC 57.278 30.769 0.00 0.00 32.55 3.91
3738 4718 4.383774 TCTACAAAACGAAACTGCATCG 57.616 40.909 6.65 6.65 45.47 3.84
3739 4719 1.753956 ACAAAACGAAACTGCATCGC 58.246 45.000 8.06 0.00 43.88 4.58
3740 4720 1.064803 ACAAAACGAAACTGCATCGCA 59.935 42.857 8.06 0.00 43.88 5.10
3741 4721 1.447938 CAAAACGAAACTGCATCGCAC 59.552 47.619 8.06 0.00 43.88 5.34
3742 4722 0.040425 AAACGAAACTGCATCGCACC 60.040 50.000 8.06 0.00 43.88 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.464389 CGGCACTAACTAATAATTAACCGCT 59.536 40.000 0.00 0.00 0.00 5.52
73 74 2.930887 GCGAGGTTCTAATCACAGCACA 60.931 50.000 0.00 0.00 0.00 4.57
201 202 4.342092 TGCAAGAAAAGGAAAGGAAAGGAG 59.658 41.667 0.00 0.00 0.00 3.69
314 330 7.218314 AGATCCTAATCTCAATCAAAGGGTT 57.782 36.000 0.00 0.00 37.75 4.11
338 354 4.041075 TGTTATGCCTTGTGAACTGGAGTA 59.959 41.667 0.00 0.00 0.00 2.59
396 1194 9.393512 GCAGATATATCTTTCTTGCTGGATTAT 57.606 33.333 12.75 0.00 34.22 1.28
397 1195 7.826252 GGCAGATATATCTTTCTTGCTGGATTA 59.174 37.037 12.75 0.00 34.22 1.75
398 1196 6.658391 GGCAGATATATCTTTCTTGCTGGATT 59.342 38.462 12.75 0.00 34.22 3.01
399 1197 6.179040 GGCAGATATATCTTTCTTGCTGGAT 58.821 40.000 12.75 0.00 34.22 3.41
400 1198 5.072193 TGGCAGATATATCTTTCTTGCTGGA 59.928 40.000 12.75 0.95 34.22 3.86
401 1199 5.311265 TGGCAGATATATCTTTCTTGCTGG 58.689 41.667 12.75 0.01 34.22 4.85
402 1200 6.430308 ACATGGCAGATATATCTTTCTTGCTG 59.570 38.462 12.75 10.79 34.22 4.41
403 1201 6.540995 ACATGGCAGATATATCTTTCTTGCT 58.459 36.000 12.75 0.00 34.22 3.91
404 1202 6.429078 TGACATGGCAGATATATCTTTCTTGC 59.571 38.462 12.75 12.90 34.22 4.01
405 1203 7.974482 TGACATGGCAGATATATCTTTCTTG 57.026 36.000 12.75 15.82 34.22 3.02
406 1204 8.162085 ACATGACATGGCAGATATATCTTTCTT 58.838 33.333 19.39 4.07 32.19 2.52
409 1207 7.455891 TGACATGACATGGCAGATATATCTTT 58.544 34.615 20.37 0.00 45.06 2.52
686 1501 4.509122 CCTTGATTTCTCCTCCTCCCAAAA 60.509 45.833 0.00 0.00 0.00 2.44
709 1524 4.016444 TCTCTCTCTCTCCTCAGCTTTTC 58.984 47.826 0.00 0.00 0.00 2.29
808 1625 2.040359 GGAGAGGAGGGAAGGGGG 60.040 72.222 0.00 0.00 0.00 5.40
837 1664 1.052124 ACGGAGTGGTCAACAGGGAA 61.052 55.000 0.00 0.00 42.51 3.97
887 1714 1.430369 GGAAGGAGGATGGGATGGGG 61.430 65.000 0.00 0.00 0.00 4.96
1012 1841 0.856982 GGGGAGGGAGAGAGAGATGA 59.143 60.000 0.00 0.00 0.00 2.92
1104 1934 2.445654 CTGCCTCCTCTCCCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
1105 1935 2.445654 CCTGCCTCCTCTCCCCTC 60.446 72.222 0.00 0.00 0.00 4.30
1106 1936 4.814041 GCCTGCCTCCTCTCCCCT 62.814 72.222 0.00 0.00 0.00 4.79
1387 2220 0.447406 CCAGCGACGATTTGCATTCA 59.553 50.000 0.00 0.00 34.03 2.57
1388 2221 0.248215 CCCAGCGACGATTTGCATTC 60.248 55.000 0.00 0.00 34.03 2.67
1389 2222 0.676466 TCCCAGCGACGATTTGCATT 60.676 50.000 0.00 0.00 34.03 3.56
1646 2479 1.213537 CAAGCACAAAGGCCCATCG 59.786 57.895 0.00 0.00 0.00 3.84
1647 2480 1.593265 CCAAGCACAAAGGCCCATC 59.407 57.895 0.00 0.00 0.00 3.51
1648 2481 2.586293 GCCAAGCACAAAGGCCCAT 61.586 57.895 0.00 0.00 42.58 4.00
1649 2482 3.233231 GCCAAGCACAAAGGCCCA 61.233 61.111 0.00 0.00 42.58 5.36
1650 2483 4.362476 CGCCAAGCACAAAGGCCC 62.362 66.667 0.00 0.00 45.56 5.80
1651 2484 2.548127 GATCGCCAAGCACAAAGGCC 62.548 60.000 0.00 0.00 45.56 5.19
1652 2485 1.153958 GATCGCCAAGCACAAAGGC 60.154 57.895 0.00 0.00 44.89 4.35
2076 2927 4.363990 ACACGAGTGCTGCCTCCG 62.364 66.667 2.76 7.56 0.00 4.63
2093 2944 2.568612 CCGAAGTCGCTGAGCAGA 59.431 61.111 4.88 0.00 38.18 4.26
2297 3154 4.373116 GAGCACCGCCGGAACTCA 62.373 66.667 11.71 0.00 31.88 3.41
2351 3208 3.889134 CTTCCAGTGCAGCGCCTGA 62.889 63.158 12.27 2.57 32.44 3.86
2420 3277 2.032376 GGGTTGGGGTTCGCGTTA 59.968 61.111 5.77 0.00 0.00 3.18
2511 3440 7.054998 GCCAGAAAAATAAAAGAAACGAAACG 58.945 34.615 0.00 0.00 0.00 3.60
2512 3441 7.010645 TGGCCAGAAAAATAAAAGAAACGAAAC 59.989 33.333 0.00 0.00 0.00 2.78
2513 3442 7.042335 TGGCCAGAAAAATAAAAGAAACGAAA 58.958 30.769 0.00 0.00 0.00 3.46
2514 3443 6.574350 TGGCCAGAAAAATAAAAGAAACGAA 58.426 32.000 0.00 0.00 0.00 3.85
2515 3444 6.150396 TGGCCAGAAAAATAAAAGAAACGA 57.850 33.333 0.00 0.00 0.00 3.85
2571 3500 2.100197 CATGTACAGAGAAGGGTCCGA 58.900 52.381 0.33 0.00 0.00 4.55
2610 3539 1.019805 GCAAGTAACCAGACTCGGCC 61.020 60.000 0.00 0.00 0.00 6.13
2726 3663 8.286800 TCACATCTCGACGAAACATTTAAATTT 58.713 29.630 0.00 0.00 0.00 1.82
2728 3665 7.359262 TCACATCTCGACGAAACATTTAAAT 57.641 32.000 0.00 0.00 0.00 1.40
2780 3717 2.586425 CAGGAAAGAAGGGAAACTGCA 58.414 47.619 0.00 0.00 0.00 4.41
2781 3718 1.889170 CCAGGAAAGAAGGGAAACTGC 59.111 52.381 0.00 0.00 0.00 4.40
2782 3719 2.887152 CACCAGGAAAGAAGGGAAACTG 59.113 50.000 0.00 0.00 0.00 3.16
2812 3749 1.304134 TAGCAGAGTGGCAGACGGA 60.304 57.895 0.00 0.00 35.83 4.69
2828 3765 2.158842 CCTCTCCCTGCCATTTCTGTAG 60.159 54.545 0.00 0.00 0.00 2.74
2906 3844 4.111016 CCGTCGTGCTGGAGCGTA 62.111 66.667 0.00 0.00 45.83 4.42
2941 3890 1.324005 AAGCAGACTAGTCCCGAGCC 61.324 60.000 19.38 2.11 0.00 4.70
2942 3891 0.101579 GAAGCAGACTAGTCCCGAGC 59.898 60.000 19.38 17.04 0.00 5.03
2944 3893 1.030488 CCGAAGCAGACTAGTCCCGA 61.030 60.000 19.38 0.00 0.00 5.14
2945 3894 1.433879 CCGAAGCAGACTAGTCCCG 59.566 63.158 19.38 11.99 0.00 5.14
2946 3895 1.142097 GCCGAAGCAGACTAGTCCC 59.858 63.158 19.38 10.81 39.53 4.46
2947 3896 1.142097 GGCCGAAGCAGACTAGTCC 59.858 63.158 19.38 5.15 42.56 3.85
2949 3898 1.038130 ATCGGCCGAAGCAGACTAGT 61.038 55.000 34.66 8.60 46.23 2.57
2950 3899 0.318275 GATCGGCCGAAGCAGACTAG 60.318 60.000 34.66 0.00 46.23 2.57
2982 3931 5.123820 TCATTTTCATTACAGCCCTCTTTCG 59.876 40.000 0.00 0.00 0.00 3.46
3015 3985 0.404040 AGATTTCCCGCTGGGTTTCA 59.596 50.000 12.46 0.00 44.74 2.69
3016 3986 1.095600 GAGATTTCCCGCTGGGTTTC 58.904 55.000 12.46 8.54 44.74 2.78
3017 3987 0.404040 TGAGATTTCCCGCTGGGTTT 59.596 50.000 12.46 0.83 44.74 3.27
3018 3988 0.625849 ATGAGATTTCCCGCTGGGTT 59.374 50.000 12.46 1.14 44.74 4.11
3019 3989 0.181350 GATGAGATTTCCCGCTGGGT 59.819 55.000 12.46 0.00 44.74 4.51
3020 3990 0.471617 AGATGAGATTTCCCGCTGGG 59.528 55.000 7.24 7.24 46.11 4.45
3021 3991 1.139654 TGAGATGAGATTTCCCGCTGG 59.860 52.381 0.00 0.00 0.00 4.85
3022 3992 2.609427 TGAGATGAGATTTCCCGCTG 57.391 50.000 0.00 0.00 0.00 5.18
3023 3993 2.158842 CCTTGAGATGAGATTTCCCGCT 60.159 50.000 0.00 0.00 0.00 5.52
3024 3994 2.158900 TCCTTGAGATGAGATTTCCCGC 60.159 50.000 0.00 0.00 0.00 6.13
3025 3995 3.827008 TCCTTGAGATGAGATTTCCCG 57.173 47.619 0.00 0.00 0.00 5.14
3026 3996 5.256474 TGTTTCCTTGAGATGAGATTTCCC 58.744 41.667 0.00 0.00 0.00 3.97
3027 3997 6.432472 ACTTGTTTCCTTGAGATGAGATTTCC 59.568 38.462 0.00 0.00 0.00 3.13
3028 3998 7.446001 ACTTGTTTCCTTGAGATGAGATTTC 57.554 36.000 0.00 0.00 0.00 2.17
3029 3999 8.378565 TCTACTTGTTTCCTTGAGATGAGATTT 58.621 33.333 0.00 0.00 0.00 2.17
3030 4000 7.911651 TCTACTTGTTTCCTTGAGATGAGATT 58.088 34.615 0.00 0.00 0.00 2.40
3031 4001 7.487822 TCTACTTGTTTCCTTGAGATGAGAT 57.512 36.000 0.00 0.00 0.00 2.75
3032 4002 6.573289 GCTCTACTTGTTTCCTTGAGATGAGA 60.573 42.308 0.00 0.00 0.00 3.27
3033 4003 5.580297 GCTCTACTTGTTTCCTTGAGATGAG 59.420 44.000 0.00 0.00 0.00 2.90
3034 4004 5.482908 GCTCTACTTGTTTCCTTGAGATGA 58.517 41.667 0.00 0.00 0.00 2.92
3035 4005 4.328440 CGCTCTACTTGTTTCCTTGAGATG 59.672 45.833 0.00 0.00 0.00 2.90
3036 4006 4.220821 TCGCTCTACTTGTTTCCTTGAGAT 59.779 41.667 0.00 0.00 0.00 2.75
3037 4007 3.572682 TCGCTCTACTTGTTTCCTTGAGA 59.427 43.478 0.00 0.00 0.00 3.27
3038 4008 3.914312 TCGCTCTACTTGTTTCCTTGAG 58.086 45.455 0.00 0.00 0.00 3.02
3039 4009 3.321111 ACTCGCTCTACTTGTTTCCTTGA 59.679 43.478 0.00 0.00 0.00 3.02
3040 4010 3.654414 ACTCGCTCTACTTGTTTCCTTG 58.346 45.455 0.00 0.00 0.00 3.61
3041 4011 4.082136 CCTACTCGCTCTACTTGTTTCCTT 60.082 45.833 0.00 0.00 0.00 3.36
3042 4012 3.444388 CCTACTCGCTCTACTTGTTTCCT 59.556 47.826 0.00 0.00 0.00 3.36
3043 4013 3.442977 TCCTACTCGCTCTACTTGTTTCC 59.557 47.826 0.00 0.00 0.00 3.13
3044 4014 4.698583 TCCTACTCGCTCTACTTGTTTC 57.301 45.455 0.00 0.00 0.00 2.78
3045 4015 5.394333 GGAATCCTACTCGCTCTACTTGTTT 60.394 44.000 0.00 0.00 0.00 2.83
3046 4016 4.098196 GGAATCCTACTCGCTCTACTTGTT 59.902 45.833 0.00 0.00 0.00 2.83
3047 4017 3.633065 GGAATCCTACTCGCTCTACTTGT 59.367 47.826 0.00 0.00 0.00 3.16
3048 4018 3.004944 GGGAATCCTACTCGCTCTACTTG 59.995 52.174 0.00 0.00 0.00 3.16
3049 4019 3.224269 GGGAATCCTACTCGCTCTACTT 58.776 50.000 0.00 0.00 0.00 2.24
3050 4020 2.811136 CGGGAATCCTACTCGCTCTACT 60.811 54.545 0.00 0.00 0.00 2.57
3051 4021 1.536331 CGGGAATCCTACTCGCTCTAC 59.464 57.143 0.00 0.00 0.00 2.59
3052 4022 1.142465 ACGGGAATCCTACTCGCTCTA 59.858 52.381 0.00 0.00 0.00 2.43
3053 4023 0.106619 ACGGGAATCCTACTCGCTCT 60.107 55.000 0.00 0.00 0.00 4.09
3054 4024 0.030908 CACGGGAATCCTACTCGCTC 59.969 60.000 0.00 0.00 0.00 5.03
3055 4025 2.017559 GCACGGGAATCCTACTCGCT 62.018 60.000 0.00 0.00 0.00 4.93
3056 4026 1.591863 GCACGGGAATCCTACTCGC 60.592 63.158 0.00 0.00 0.00 5.03
3057 4027 1.067582 GGCACGGGAATCCTACTCG 59.932 63.158 0.00 0.00 0.00 4.18
3058 4028 1.446366 GGGCACGGGAATCCTACTC 59.554 63.158 0.00 0.00 0.00 2.59
3059 4029 2.070650 GGGGCACGGGAATCCTACT 61.071 63.158 0.00 0.00 0.00 2.57
3060 4030 2.509422 GGGGCACGGGAATCCTAC 59.491 66.667 0.00 0.00 0.00 3.18
3061 4031 3.158648 CGGGGCACGGGAATCCTA 61.159 66.667 0.00 0.00 39.42 2.94
3198 4169 1.375652 ACACTAGCAGCAGCAGCAG 60.376 57.895 12.92 9.67 45.49 4.24
3199 4170 1.670083 CACACTAGCAGCAGCAGCA 60.670 57.895 12.92 0.00 45.49 4.41
3200 4171 1.670406 ACACACTAGCAGCAGCAGC 60.670 57.895 3.17 0.46 45.49 5.25
3201 4172 0.602106 ACACACACTAGCAGCAGCAG 60.602 55.000 3.17 1.45 45.49 4.24
3202 4173 0.678950 TACACACACTAGCAGCAGCA 59.321 50.000 3.17 0.00 45.49 4.41
3234 4205 1.437986 GTCCACTAGCGCCGAATCT 59.562 57.895 2.29 0.00 0.00 2.40
3235 4206 1.591863 GGTCCACTAGCGCCGAATC 60.592 63.158 2.29 0.00 0.00 2.52
3236 4207 1.686325 ATGGTCCACTAGCGCCGAAT 61.686 55.000 2.29 0.00 0.00 3.34
3237 4208 2.355986 ATGGTCCACTAGCGCCGAA 61.356 57.895 2.29 0.00 0.00 4.30
3254 4225 1.987807 CTGAGGTTCCGCCCCATCAT 61.988 60.000 0.00 0.00 38.26 2.45
3286 4257 0.929824 GCACACACATGCACACGTTC 60.930 55.000 0.00 0.00 45.39 3.95
3305 4278 1.452108 GATCTGTTTGCCCCTCCCG 60.452 63.158 0.00 0.00 0.00 5.14
3307 4280 0.744771 GTCGATCTGTTTGCCCCTCC 60.745 60.000 0.00 0.00 0.00 4.30
3309 4282 1.079127 CGTCGATCTGTTTGCCCCT 60.079 57.895 0.00 0.00 0.00 4.79
3313 4286 1.057361 GACGCGTCGATCTGTTTGC 59.943 57.895 25.19 0.00 0.00 3.68
3341 4317 1.463444 CCTCGGCAAGAAGTTAAACGG 59.537 52.381 0.00 0.00 0.00 4.44
3363 4339 2.100197 ACATCCAACTCGCTGCTACTA 58.900 47.619 0.00 0.00 0.00 1.82
3366 4342 1.202256 CGTACATCCAACTCGCTGCTA 60.202 52.381 0.00 0.00 0.00 3.49
3388 4364 5.425539 GGTAGCCACCCATACATACATAGAT 59.574 44.000 0.00 0.00 39.11 1.98
3390 4366 4.381612 CGGTAGCCACCCATACATACATAG 60.382 50.000 0.00 0.00 42.43 2.23
3392 4368 2.301870 CGGTAGCCACCCATACATACAT 59.698 50.000 0.00 0.00 42.43 2.29
3416 4392 3.946558 AGTAGTGGATCGTGACCTAGTTC 59.053 47.826 0.00 0.00 0.00 3.01
3463 4443 8.964476 AAAACTAACTAACGATGATGGATGAT 57.036 30.769 0.00 0.00 0.00 2.45
3464 4444 9.529325 CTAAAACTAACTAACGATGATGGATGA 57.471 33.333 0.00 0.00 0.00 2.92
3465 4445 8.765219 CCTAAAACTAACTAACGATGATGGATG 58.235 37.037 0.00 0.00 0.00 3.51
3475 4455 4.664891 GCACGCACCTAAAACTAACTAACG 60.665 45.833 0.00 0.00 0.00 3.18
3503 4483 3.695022 AAAGATCGACCGGCGGACG 62.695 63.158 37.52 37.52 41.67 4.79
3504 4484 1.017701 AAAAAGATCGACCGGCGGAC 61.018 55.000 35.78 26.64 41.33 4.79
3505 4485 0.531657 TAAAAAGATCGACCGGCGGA 59.468 50.000 35.78 11.41 41.33 5.54
3506 4486 1.361793 TTAAAAAGATCGACCGGCGG 58.638 50.000 27.06 27.06 41.33 6.13
3507 4487 3.158268 GTTTTAAAAAGATCGACCGGCG 58.842 45.455 0.00 6.66 42.69 6.46
3508 4488 4.149910 TGTTTTAAAAAGATCGACCGGC 57.850 40.909 0.00 0.00 0.00 6.13
3509 4489 5.329493 GGATGTTTTAAAAAGATCGACCGG 58.671 41.667 0.00 0.00 0.00 5.28
3510 4490 5.019498 CGGATGTTTTAAAAAGATCGACCG 58.981 41.667 1.31 7.63 0.00 4.79
3511 4491 6.173191 TCGGATGTTTTAAAAAGATCGACC 57.827 37.500 1.31 0.02 0.00 4.79
3512 4492 7.588488 TGTTTCGGATGTTTTAAAAAGATCGAC 59.412 33.333 1.31 5.79 0.00 4.20
3513 4493 7.640852 TGTTTCGGATGTTTTAAAAAGATCGA 58.359 30.769 1.31 7.71 0.00 3.59
3514 4494 7.845617 TGTTTCGGATGTTTTAAAAAGATCG 57.154 32.000 1.31 5.60 0.00 3.69
3516 4496 9.855021 CCTATGTTTCGGATGTTTTAAAAAGAT 57.145 29.630 1.31 0.00 0.00 2.40
3517 4497 7.810759 GCCTATGTTTCGGATGTTTTAAAAAGA 59.189 33.333 1.31 0.00 0.00 2.52
3518 4498 7.062956 GGCCTATGTTTCGGATGTTTTAAAAAG 59.937 37.037 1.31 0.00 0.00 2.27
3519 4499 6.869388 GGCCTATGTTTCGGATGTTTTAAAAA 59.131 34.615 1.31 0.00 0.00 1.94
3520 4500 6.015350 TGGCCTATGTTTCGGATGTTTTAAAA 60.015 34.615 3.32 0.00 0.00 1.52
3521 4501 5.477291 TGGCCTATGTTTCGGATGTTTTAAA 59.523 36.000 3.32 0.00 0.00 1.52
3522 4502 5.010933 TGGCCTATGTTTCGGATGTTTTAA 58.989 37.500 3.32 0.00 0.00 1.52
3523 4503 4.590918 TGGCCTATGTTTCGGATGTTTTA 58.409 39.130 3.32 0.00 0.00 1.52
3524 4504 3.426615 TGGCCTATGTTTCGGATGTTTT 58.573 40.909 3.32 0.00 0.00 2.43
3525 4505 3.080300 TGGCCTATGTTTCGGATGTTT 57.920 42.857 3.32 0.00 0.00 2.83
3526 4506 2.799126 TGGCCTATGTTTCGGATGTT 57.201 45.000 3.32 0.00 0.00 2.71
3527 4507 2.806745 CGATGGCCTATGTTTCGGATGT 60.807 50.000 3.32 0.00 0.00 3.06
3528 4508 1.800586 CGATGGCCTATGTTTCGGATG 59.199 52.381 3.32 0.00 0.00 3.51
3529 4509 1.878102 GCGATGGCCTATGTTTCGGAT 60.878 52.381 3.32 0.00 0.00 4.18
3530 4510 0.531974 GCGATGGCCTATGTTTCGGA 60.532 55.000 3.32 0.00 0.00 4.55
3531 4511 1.831389 CGCGATGGCCTATGTTTCGG 61.831 60.000 0.00 0.00 35.02 4.30
3532 4512 0.874175 TCGCGATGGCCTATGTTTCG 60.874 55.000 3.71 4.44 35.02 3.46
3533 4513 0.861837 CTCGCGATGGCCTATGTTTC 59.138 55.000 10.36 0.00 35.02 2.78
3534 4514 1.160329 GCTCGCGATGGCCTATGTTT 61.160 55.000 10.36 0.00 35.02 2.83
3535 4515 1.595382 GCTCGCGATGGCCTATGTT 60.595 57.895 10.36 0.00 35.02 2.71
3536 4516 2.029666 GCTCGCGATGGCCTATGT 59.970 61.111 10.36 0.00 35.02 2.29
3537 4517 2.740055 GGCTCGCGATGGCCTATG 60.740 66.667 26.97 7.67 44.48 2.23
3542 4522 0.671781 ATCTAATGGCTCGCGATGGC 60.672 55.000 10.36 16.69 0.00 4.40
3543 4523 1.800805 AATCTAATGGCTCGCGATGG 58.199 50.000 10.36 0.00 0.00 3.51
3544 4524 2.802247 TCAAATCTAATGGCTCGCGATG 59.198 45.455 10.36 5.11 0.00 3.84
3545 4525 2.802816 GTCAAATCTAATGGCTCGCGAT 59.197 45.455 10.36 0.00 0.00 4.58
3546 4526 2.159099 AGTCAAATCTAATGGCTCGCGA 60.159 45.455 9.26 9.26 0.00 5.87
3547 4527 2.205074 AGTCAAATCTAATGGCTCGCG 58.795 47.619 0.00 0.00 0.00 5.87
3548 4528 5.466728 TGATTAGTCAAATCTAATGGCTCGC 59.533 40.000 4.09 0.00 43.83 5.03
3549 4529 7.225538 ACTTGATTAGTCAAATCTAATGGCTCG 59.774 37.037 2.06 0.00 43.39 5.03
3550 4530 8.341173 CACTTGATTAGTCAAATCTAATGGCTC 58.659 37.037 2.06 0.00 43.39 4.70
3551 4531 7.284034 CCACTTGATTAGTCAAATCTAATGGCT 59.716 37.037 2.06 0.00 43.39 4.75
3552 4532 7.420800 CCACTTGATTAGTCAAATCTAATGGC 58.579 38.462 2.06 0.00 43.39 4.40
3553 4533 7.420800 GCCACTTGATTAGTCAAATCTAATGG 58.579 38.462 2.06 5.64 43.39 3.16
3554 4534 7.420800 GGCCACTTGATTAGTCAAATCTAATG 58.579 38.462 0.00 0.00 43.39 1.90
3555 4535 6.260936 CGGCCACTTGATTAGTCAAATCTAAT 59.739 38.462 2.24 0.00 43.39 1.73
3556 4536 5.584649 CGGCCACTTGATTAGTCAAATCTAA 59.415 40.000 2.24 0.00 43.39 2.10
3557 4537 5.105106 TCGGCCACTTGATTAGTCAAATCTA 60.105 40.000 2.24 0.00 43.39 1.98
3558 4538 3.941483 CGGCCACTTGATTAGTCAAATCT 59.059 43.478 2.24 0.00 43.39 2.40
3559 4539 3.938963 TCGGCCACTTGATTAGTCAAATC 59.061 43.478 2.24 0.00 43.39 2.17
3560 4540 3.950397 TCGGCCACTTGATTAGTCAAAT 58.050 40.909 2.24 0.00 43.39 2.32
3561 4541 3.410631 TCGGCCACTTGATTAGTCAAA 57.589 42.857 2.24 0.00 43.39 2.69
3562 4542 3.410631 TTCGGCCACTTGATTAGTCAA 57.589 42.857 2.24 0.34 41.89 3.18
3563 4543 3.270027 CATTCGGCCACTTGATTAGTCA 58.730 45.455 2.24 0.00 33.85 3.41
3564 4544 3.270877 ACATTCGGCCACTTGATTAGTC 58.729 45.455 2.24 0.00 33.85 2.59
3565 4545 3.350219 ACATTCGGCCACTTGATTAGT 57.650 42.857 2.24 0.00 37.68 2.24
3566 4546 4.035208 GGTAACATTCGGCCACTTGATTAG 59.965 45.833 2.24 0.00 0.00 1.73
3567 4547 3.942748 GGTAACATTCGGCCACTTGATTA 59.057 43.478 2.24 0.00 0.00 1.75
3568 4548 2.752903 GGTAACATTCGGCCACTTGATT 59.247 45.455 2.24 0.00 0.00 2.57
3569 4549 2.365582 GGTAACATTCGGCCACTTGAT 58.634 47.619 2.24 0.00 0.00 2.57
3570 4550 1.816074 GGTAACATTCGGCCACTTGA 58.184 50.000 2.24 0.00 0.00 3.02
3571 4551 0.446222 CGGTAACATTCGGCCACTTG 59.554 55.000 2.24 0.00 0.00 3.16
3572 4552 0.035739 ACGGTAACATTCGGCCACTT 59.964 50.000 2.24 0.00 0.00 3.16
3573 4553 0.390735 GACGGTAACATTCGGCCACT 60.391 55.000 2.24 0.00 0.00 4.00
3574 4554 2.084013 GACGGTAACATTCGGCCAC 58.916 57.895 2.24 0.00 0.00 5.01
3575 4555 4.602159 GACGGTAACATTCGGCCA 57.398 55.556 2.24 0.00 0.00 5.36
3577 4557 1.363885 GGTGGACGGTAACATTCGGC 61.364 60.000 0.00 0.00 0.00 5.54
3578 4558 0.037139 TGGTGGACGGTAACATTCGG 60.037 55.000 0.00 0.00 0.00 4.30
3579 4559 1.073177 GTGGTGGACGGTAACATTCG 58.927 55.000 0.00 0.00 0.00 3.34
3580 4560 2.073816 CAGTGGTGGACGGTAACATTC 58.926 52.381 0.00 0.00 0.00 2.67
3581 4561 1.880646 GCAGTGGTGGACGGTAACATT 60.881 52.381 0.00 0.00 0.00 2.71
3582 4562 0.321298 GCAGTGGTGGACGGTAACAT 60.321 55.000 0.00 0.00 0.00 2.71
3583 4563 1.070105 GCAGTGGTGGACGGTAACA 59.930 57.895 0.00 0.00 0.00 2.41
3584 4564 0.533308 TTGCAGTGGTGGACGGTAAC 60.533 55.000 0.00 0.00 0.00 2.50
3585 4565 0.533308 GTTGCAGTGGTGGACGGTAA 60.533 55.000 0.00 0.00 0.00 2.85
3586 4566 1.070105 GTTGCAGTGGTGGACGGTA 59.930 57.895 0.00 0.00 0.00 4.02
3587 4567 2.203153 GTTGCAGTGGTGGACGGT 60.203 61.111 0.00 0.00 0.00 4.83
3588 4568 2.203139 TGTTGCAGTGGTGGACGG 60.203 61.111 0.00 0.00 0.00 4.79
3589 4569 1.165907 ATGTGTTGCAGTGGTGGACG 61.166 55.000 0.00 0.00 0.00 4.79
3590 4570 0.311790 CATGTGTTGCAGTGGTGGAC 59.688 55.000 0.00 0.00 0.00 4.02
3591 4571 2.718094 CATGTGTTGCAGTGGTGGA 58.282 52.632 0.00 0.00 0.00 4.02
3602 4582 8.891720 AGAAATTTTTACAACAATGCATGTGTT 58.108 25.926 16.54 16.54 42.99 3.32
3603 4583 8.436046 AGAAATTTTTACAACAATGCATGTGT 57.564 26.923 0.00 8.05 42.99 3.72
3604 4584 9.160576 CAAGAAATTTTTACAACAATGCATGTG 57.839 29.630 0.00 3.58 42.99 3.21
3605 4585 7.856894 GCAAGAAATTTTTACAACAATGCATGT 59.143 29.630 0.00 0.00 46.82 3.21
3606 4586 7.856398 TGCAAGAAATTTTTACAACAATGCATG 59.144 29.630 0.00 0.00 34.36 4.06
3607 4587 7.928103 TGCAAGAAATTTTTACAACAATGCAT 58.072 26.923 0.00 0.00 34.36 3.96
3608 4588 7.312657 TGCAAGAAATTTTTACAACAATGCA 57.687 28.000 0.00 0.00 36.65 3.96
3609 4589 7.695618 TGTTGCAAGAAATTTTTACAACAATGC 59.304 29.630 19.45 9.02 41.89 3.56
3610 4590 8.997960 GTGTTGCAAGAAATTTTTACAACAATG 58.002 29.630 21.64 2.33 45.06 2.82
3611 4591 8.725148 TGTGTTGCAAGAAATTTTTACAACAAT 58.275 25.926 21.64 0.00 45.06 2.71
3612 4592 8.012241 GTGTGTTGCAAGAAATTTTTACAACAA 58.988 29.630 21.64 14.04 45.06 2.83
3613 4593 7.171508 TGTGTGTTGCAAGAAATTTTTACAACA 59.828 29.630 18.52 18.52 42.41 3.33
3614 4594 7.513968 TGTGTGTTGCAAGAAATTTTTACAAC 58.486 30.769 15.26 15.26 37.14 3.32
3615 4595 7.658179 TGTGTGTTGCAAGAAATTTTTACAA 57.342 28.000 0.00 0.00 0.00 2.41
3616 4596 7.763528 AGATGTGTGTTGCAAGAAATTTTTACA 59.236 29.630 0.00 0.00 0.00 2.41
3617 4597 8.130307 AGATGTGTGTTGCAAGAAATTTTTAC 57.870 30.769 0.00 0.00 0.00 2.01
3618 4598 8.602328 CAAGATGTGTGTTGCAAGAAATTTTTA 58.398 29.630 0.00 0.00 0.00 1.52
3619 4599 7.119553 ACAAGATGTGTGTTGCAAGAAATTTTT 59.880 29.630 0.00 0.00 39.72 1.94
3620 4600 6.594937 ACAAGATGTGTGTTGCAAGAAATTTT 59.405 30.769 0.00 0.00 39.72 1.82
3621 4601 6.108015 ACAAGATGTGTGTTGCAAGAAATTT 58.892 32.000 0.00 0.00 39.72 1.82
3622 4602 5.663456 ACAAGATGTGTGTTGCAAGAAATT 58.337 33.333 0.00 0.00 39.72 1.82
3623 4603 5.266733 ACAAGATGTGTGTTGCAAGAAAT 57.733 34.783 0.00 0.00 39.72 2.17
3624 4604 4.717233 ACAAGATGTGTGTTGCAAGAAA 57.283 36.364 0.00 0.00 39.72 2.52
3625 4605 4.422840 CAACAAGATGTGTGTTGCAAGAA 58.577 39.130 0.00 0.00 46.63 2.52
3626 4606 4.031418 CAACAAGATGTGTGTTGCAAGA 57.969 40.909 0.00 0.00 46.63 3.02
3632 4612 4.581824 AGAATCTGCAACAAGATGTGTGTT 59.418 37.500 0.00 0.00 40.60 3.32
3633 4613 4.139786 AGAATCTGCAACAAGATGTGTGT 58.860 39.130 0.00 0.00 40.60 3.72
3634 4614 4.761235 AGAATCTGCAACAAGATGTGTG 57.239 40.909 0.00 0.00 40.60 3.82
3635 4615 5.779529 AAAGAATCTGCAACAAGATGTGT 57.220 34.783 0.00 0.00 44.64 3.72
3636 4616 5.107607 GCAAAAGAATCTGCAACAAGATGTG 60.108 40.000 0.00 0.00 36.99 3.21
3637 4617 4.986659 GCAAAAGAATCTGCAACAAGATGT 59.013 37.500 0.00 0.00 36.99 3.06
3638 4618 4.986034 TGCAAAAGAATCTGCAACAAGATG 59.014 37.500 0.00 0.00 45.25 2.90
3639 4619 5.204409 TGCAAAAGAATCTGCAACAAGAT 57.796 34.783 0.00 0.00 45.25 2.40
3640 4620 4.652421 TGCAAAAGAATCTGCAACAAGA 57.348 36.364 0.00 0.00 45.25 3.02
3646 4626 3.551082 CGTTTGTTGCAAAAGAATCTGCA 59.449 39.130 0.00 0.00 46.50 4.41
3647 4627 3.551485 ACGTTTGTTGCAAAAGAATCTGC 59.449 39.130 0.00 0.00 39.09 4.26
3648 4628 5.036737 AGACGTTTGTTGCAAAAGAATCTG 58.963 37.500 0.00 0.00 0.00 2.90
3649 4629 5.248870 AGACGTTTGTTGCAAAAGAATCT 57.751 34.783 0.00 0.00 0.00 2.40
3650 4630 5.288472 ACAAGACGTTTGTTGCAAAAGAATC 59.712 36.000 0.00 0.00 28.73 2.52
3651 4631 5.167845 ACAAGACGTTTGTTGCAAAAGAAT 58.832 33.333 0.00 0.00 28.73 2.40
3652 4632 4.551388 ACAAGACGTTTGTTGCAAAAGAA 58.449 34.783 0.00 0.00 28.73 2.52
3653 4633 4.167554 ACAAGACGTTTGTTGCAAAAGA 57.832 36.364 0.00 0.00 28.73 2.52
3654 4634 4.901866 AACAAGACGTTTGTTGCAAAAG 57.098 36.364 20.47 6.11 40.70 2.27
3661 4641 4.370364 AATCTGCAACAAGACGTTTGTT 57.630 36.364 17.44 17.44 42.75 2.83
3662 4642 4.096382 AGAAATCTGCAACAAGACGTTTGT 59.904 37.500 9.39 9.39 34.86 2.83
3663 4643 4.601019 AGAAATCTGCAACAAGACGTTTG 58.399 39.130 0.00 0.00 34.86 2.93
3664 4644 4.900635 AGAAATCTGCAACAAGACGTTT 57.099 36.364 0.00 0.00 34.86 3.60
3665 4645 4.900635 AAGAAATCTGCAACAAGACGTT 57.099 36.364 0.00 0.00 38.83 3.99
3666 4646 4.900635 AAAGAAATCTGCAACAAGACGT 57.099 36.364 0.00 0.00 0.00 4.34
3667 4647 5.036737 ACAAAAGAAATCTGCAACAAGACG 58.963 37.500 0.00 0.00 0.00 4.18
3668 4648 7.702348 AGTTACAAAAGAAATCTGCAACAAGAC 59.298 33.333 0.00 0.00 0.00 3.01
3669 4649 7.771183 AGTTACAAAAGAAATCTGCAACAAGA 58.229 30.769 0.00 0.00 0.00 3.02
3670 4650 7.992180 AGTTACAAAAGAAATCTGCAACAAG 57.008 32.000 0.00 0.00 0.00 3.16
3671 4651 9.296400 GTTAGTTACAAAAGAAATCTGCAACAA 57.704 29.630 0.00 0.00 0.00 2.83
3672 4652 8.682710 AGTTAGTTACAAAAGAAATCTGCAACA 58.317 29.630 0.00 0.00 0.00 3.33
3675 4655 9.555727 AGTAGTTAGTTACAAAAGAAATCTGCA 57.444 29.630 0.00 0.00 0.00 4.41
3681 4661 9.777575 GCAACAAGTAGTTAGTTACAAAAGAAA 57.222 29.630 0.00 0.00 38.74 2.52
3682 4662 8.117988 CGCAACAAGTAGTTAGTTACAAAAGAA 58.882 33.333 0.00 0.00 38.74 2.52
3683 4663 7.254522 CCGCAACAAGTAGTTAGTTACAAAAGA 60.255 37.037 0.00 0.00 38.74 2.52
3684 4664 6.849305 CCGCAACAAGTAGTTAGTTACAAAAG 59.151 38.462 0.00 0.00 38.74 2.27
3685 4665 6.238429 CCCGCAACAAGTAGTTAGTTACAAAA 60.238 38.462 0.00 0.00 38.74 2.44
3686 4666 5.236911 CCCGCAACAAGTAGTTAGTTACAAA 59.763 40.000 0.00 0.00 38.74 2.83
3687 4667 4.751098 CCCGCAACAAGTAGTTAGTTACAA 59.249 41.667 0.00 0.00 38.74 2.41
3688 4668 4.039004 TCCCGCAACAAGTAGTTAGTTACA 59.961 41.667 0.00 0.00 38.74 2.41
3689 4669 4.559153 TCCCGCAACAAGTAGTTAGTTAC 58.441 43.478 0.00 0.00 38.74 2.50
3690 4670 4.870123 TCCCGCAACAAGTAGTTAGTTA 57.130 40.909 0.00 0.00 38.74 2.24
3691 4671 3.756933 TCCCGCAACAAGTAGTTAGTT 57.243 42.857 0.00 0.00 38.74 2.24
3692 4672 3.975168 ATCCCGCAACAAGTAGTTAGT 57.025 42.857 0.00 0.00 38.74 2.24
3693 4673 6.920569 AATAATCCCGCAACAAGTAGTTAG 57.079 37.500 0.00 0.00 38.74 2.34
3694 4674 7.107542 AGAAATAATCCCGCAACAAGTAGTTA 58.892 34.615 0.00 0.00 38.74 2.24
3695 4675 5.944007 AGAAATAATCCCGCAACAAGTAGTT 59.056 36.000 0.00 0.00 42.42 2.24
3696 4676 5.497474 AGAAATAATCCCGCAACAAGTAGT 58.503 37.500 0.00 0.00 0.00 2.73
3697 4677 6.537301 TGTAGAAATAATCCCGCAACAAGTAG 59.463 38.462 0.00 0.00 0.00 2.57
3698 4678 6.408035 TGTAGAAATAATCCCGCAACAAGTA 58.592 36.000 0.00 0.00 0.00 2.24
3699 4679 5.250200 TGTAGAAATAATCCCGCAACAAGT 58.750 37.500 0.00 0.00 0.00 3.16
3700 4680 5.811399 TGTAGAAATAATCCCGCAACAAG 57.189 39.130 0.00 0.00 0.00 3.16
3701 4681 6.576662 TTTGTAGAAATAATCCCGCAACAA 57.423 33.333 0.00 0.00 0.00 2.83
3702 4682 6.383415 GTTTTGTAGAAATAATCCCGCAACA 58.617 36.000 0.00 0.00 0.00 3.33
3703 4683 5.510323 CGTTTTGTAGAAATAATCCCGCAAC 59.490 40.000 0.00 0.00 0.00 4.17
3704 4684 5.411977 TCGTTTTGTAGAAATAATCCCGCAA 59.588 36.000 0.00 0.00 0.00 4.85
3705 4685 4.936411 TCGTTTTGTAGAAATAATCCCGCA 59.064 37.500 0.00 0.00 0.00 5.69
3706 4686 5.473796 TCGTTTTGTAGAAATAATCCCGC 57.526 39.130 0.00 0.00 0.00 6.13
3707 4687 7.480542 CAGTTTCGTTTTGTAGAAATAATCCCG 59.519 37.037 0.00 0.00 38.43 5.14
3708 4688 7.272731 GCAGTTTCGTTTTGTAGAAATAATCCC 59.727 37.037 0.00 0.00 38.43 3.85
3709 4689 7.806014 TGCAGTTTCGTTTTGTAGAAATAATCC 59.194 33.333 0.00 0.00 38.43 3.01
3710 4690 8.722342 TGCAGTTTCGTTTTGTAGAAATAATC 57.278 30.769 0.00 0.00 38.43 1.75
3711 4691 9.341899 GATGCAGTTTCGTTTTGTAGAAATAAT 57.658 29.630 0.00 0.00 38.43 1.28
3712 4692 7.532546 CGATGCAGTTTCGTTTTGTAGAAATAA 59.467 33.333 0.00 0.00 38.43 1.40
3713 4693 7.012943 CGATGCAGTTTCGTTTTGTAGAAATA 58.987 34.615 0.00 0.00 38.43 1.40
3714 4694 5.851177 CGATGCAGTTTCGTTTTGTAGAAAT 59.149 36.000 0.00 0.00 38.43 2.17
3715 4695 5.201910 CGATGCAGTTTCGTTTTGTAGAAA 58.798 37.500 0.00 0.00 34.40 2.52
3716 4696 4.768145 CGATGCAGTTTCGTTTTGTAGAA 58.232 39.130 0.00 0.00 32.08 2.10
3717 4697 3.363575 GCGATGCAGTTTCGTTTTGTAGA 60.364 43.478 9.70 0.00 38.81 2.59
3718 4698 2.902484 GCGATGCAGTTTCGTTTTGTAG 59.098 45.455 9.70 0.00 38.81 2.74
3719 4699 2.288186 TGCGATGCAGTTTCGTTTTGTA 59.712 40.909 9.70 0.00 38.81 2.41
3720 4700 1.064803 TGCGATGCAGTTTCGTTTTGT 59.935 42.857 9.70 0.00 38.81 2.83
3721 4701 1.447938 GTGCGATGCAGTTTCGTTTTG 59.552 47.619 9.70 0.00 40.08 2.44
3722 4702 1.599419 GGTGCGATGCAGTTTCGTTTT 60.599 47.619 9.70 0.00 40.08 2.43
3723 4703 0.040425 GGTGCGATGCAGTTTCGTTT 60.040 50.000 9.70 0.00 40.08 3.60
3724 4704 1.574428 GGTGCGATGCAGTTTCGTT 59.426 52.632 9.70 0.00 40.08 3.85
3725 4705 3.253955 GGTGCGATGCAGTTTCGT 58.746 55.556 9.70 0.00 40.08 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.