Multiple sequence alignment - TraesCS2D01G280900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G280900 chr2D 100.000 7059 0 0 1 7059 353065022 353072080 0.000000e+00 13036.0
1 TraesCS2D01G280900 chr2D 79.888 179 15 11 2806 2964 107658347 107658170 2.080000e-20 111.0
2 TraesCS2D01G280900 chr2B 96.042 6342 148 30 789 7059 419612444 419618753 0.000000e+00 10226.0
3 TraesCS2D01G280900 chr2A 97.084 4492 84 14 1986 6466 471251799 471256254 0.000000e+00 7526.0
4 TraesCS2D01G280900 chr2A 93.557 1164 38 10 838 1964 471250435 471251598 0.000000e+00 1700.0
5 TraesCS2D01G280900 chr2A 92.549 255 14 2 6698 6952 471257230 471257479 1.870000e-95 361.0
6 TraesCS2D01G280900 chr2A 96.000 150 3 2 6468 6615 471256296 471256444 2.540000e-59 241.0
7 TraesCS2D01G280900 chr2A 95.370 108 4 1 6508 6615 471256451 471256557 3.390000e-38 171.0
8 TraesCS2D01G280900 chr7D 96.496 799 18 1 1 789 472096511 472097309 0.000000e+00 1312.0
9 TraesCS2D01G280900 chr7D 90.625 608 40 12 197 789 104137143 104137748 0.000000e+00 791.0
10 TraesCS2D01G280900 chr7D 83.439 157 16 2 2811 2957 126882001 126882157 3.430000e-28 137.0
11 TraesCS2D01G280900 chr3D 96.496 799 15 4 1 789 494236413 494237208 0.000000e+00 1308.0
12 TraesCS2D01G280900 chr3D 93.659 757 15 2 43 789 86207101 86206368 0.000000e+00 1101.0
13 TraesCS2D01G280900 chr3D 98.371 307 5 0 1 307 579176611 579176917 2.240000e-149 540.0
14 TraesCS2D01G280900 chr4B 91.058 794 64 6 1 789 464957018 464957809 0.000000e+00 1066.0
15 TraesCS2D01G280900 chr4B 86.517 89 11 1 2876 2964 163890135 163890048 5.830000e-16 97.1
16 TraesCS2D01G280900 chr1D 87.468 790 55 25 2 780 80845861 80845105 0.000000e+00 870.0
17 TraesCS2D01G280900 chr5B 86.386 808 44 21 1 789 536520794 536521554 0.000000e+00 822.0
18 TraesCS2D01G280900 chr5B 82.249 169 20 2 2806 2964 58389035 58388867 3.430000e-28 137.0
19 TraesCS2D01G280900 chr5B 91.667 72 5 1 6609 6679 318995476 318995405 1.620000e-16 99.0
20 TraesCS2D01G280900 chr5B 87.209 86 9 2 2880 2964 74996099 74996015 5.830000e-16 97.1
21 TraesCS2D01G280900 chr5B 87.692 65 3 2 6610 6674 320410395 320410336 3.530000e-08 71.3
22 TraesCS2D01G280900 chr3B 91.149 531 41 5 1 526 506622090 506621561 0.000000e+00 715.0
23 TraesCS2D01G280900 chr3B 88.966 435 42 5 360 789 115400468 115400035 3.750000e-147 532.0
24 TraesCS2D01G280900 chr3B 92.857 364 25 1 1 364 115406105 115405743 1.740000e-145 527.0
25 TraesCS2D01G280900 chr3B 81.731 520 57 17 262 779 184536831 184537314 3.970000e-107 399.0
26 TraesCS2D01G280900 chr1B 91.874 443 30 5 1 441 623667555 623667993 1.300000e-171 614.0
27 TraesCS2D01G280900 chr1B 82.927 123 8 6 2842 2964 562376849 562376958 1.620000e-16 99.0
28 TraesCS2D01G280900 chr4A 80.942 467 43 22 320 780 352631315 352631741 1.900000e-85 327.0
29 TraesCS2D01G280900 chr4A 93.617 47 3 0 6604 6650 494558171 494558125 3.530000e-08 71.3
30 TraesCS2D01G280900 chr6D 97.633 169 4 0 621 789 18495097 18495265 2.490000e-74 291.0
31 TraesCS2D01G280900 chr6D 92.308 104 8 0 1102 1205 19348801 19348904 1.590000e-31 148.0
32 TraesCS2D01G280900 chr6D 95.238 42 2 0 6610 6651 330111495 330111454 4.570000e-07 67.6
33 TraesCS2D01G280900 chr7B 79.330 179 17 8 2806 2964 176862511 176862333 2.690000e-19 108.0
34 TraesCS2D01G280900 chr7B 87.778 90 10 1 2875 2964 655637740 655637652 3.480000e-18 104.0
35 TraesCS2D01G280900 chr6B 86.667 90 11 1 2875 2964 494786580 494786668 1.620000e-16 99.0
36 TraesCS2D01G280900 chr7A 97.619 42 1 0 6606 6647 634962346 634962387 9.820000e-09 73.1
37 TraesCS2D01G280900 chr5D 87.692 65 3 2 6610 6674 282357444 282357385 3.530000e-08 71.3
38 TraesCS2D01G280900 chr5A 87.692 65 3 2 6610 6674 374896715 374896656 3.530000e-08 71.3
39 TraesCS2D01G280900 chr6A 95.122 41 2 0 6610 6650 67133249 67133209 1.640000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G280900 chr2D 353065022 353072080 7058 False 13036.0 13036 100.000 1 7059 1 chr2D.!!$F1 7058
1 TraesCS2D01G280900 chr2B 419612444 419618753 6309 False 10226.0 10226 96.042 789 7059 1 chr2B.!!$F1 6270
2 TraesCS2D01G280900 chr2A 471250435 471257479 7044 False 1999.8 7526 94.912 838 6952 5 chr2A.!!$F1 6114
3 TraesCS2D01G280900 chr7D 472096511 472097309 798 False 1312.0 1312 96.496 1 789 1 chr7D.!!$F3 788
4 TraesCS2D01G280900 chr7D 104137143 104137748 605 False 791.0 791 90.625 197 789 1 chr7D.!!$F1 592
5 TraesCS2D01G280900 chr3D 494236413 494237208 795 False 1308.0 1308 96.496 1 789 1 chr3D.!!$F1 788
6 TraesCS2D01G280900 chr3D 86206368 86207101 733 True 1101.0 1101 93.659 43 789 1 chr3D.!!$R1 746
7 TraesCS2D01G280900 chr4B 464957018 464957809 791 False 1066.0 1066 91.058 1 789 1 chr4B.!!$F1 788
8 TraesCS2D01G280900 chr1D 80845105 80845861 756 True 870.0 870 87.468 2 780 1 chr1D.!!$R1 778
9 TraesCS2D01G280900 chr5B 536520794 536521554 760 False 822.0 822 86.386 1 789 1 chr5B.!!$F1 788
10 TraesCS2D01G280900 chr3B 506621561 506622090 529 True 715.0 715 91.149 1 526 1 chr3B.!!$R3 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 897 1.508545 CGATCTGTCCAGTCGTGCT 59.491 57.895 9.57 0.00 31.89 4.40 F
1221 1299 1.392710 CCTACGCCTCATCCGTCCTT 61.393 60.000 0.00 0.00 39.88 3.36 F
2875 3193 0.826062 GCCATAGCAAAATGCCCAGT 59.174 50.000 0.00 0.00 46.52 4.00 F
2936 3264 1.005867 AAGGCAGTGGCAAAATGCG 60.006 52.632 20.04 0.00 46.21 4.73 F
3958 4287 3.467803 ACTGTTGAGGCTTTGTACTGAC 58.532 45.455 0.00 0.00 0.00 3.51 F
4000 4329 2.939103 GAGAGGTTCAAATAGCATGCGT 59.061 45.455 13.01 1.91 0.00 5.24 F
5102 5432 3.040795 CGTTCGATGAACCTATGTACCG 58.959 50.000 4.25 0.00 39.14 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1931 1.337260 ACTGCCGATGACTGTGAAGAC 60.337 52.381 0.00 0.0 0.00 3.01 R
3115 3444 1.536940 AATAACCCCGAAACCAACCG 58.463 50.000 0.00 0.0 0.00 4.44 R
3958 4287 0.754217 TTGTCGTAGGATCTCCCCCG 60.754 60.000 0.00 0.0 36.42 5.73 R
4000 4329 6.096705 CCATTGGTGAAGGTATCATAAGCAAA 59.903 38.462 0.00 0.0 40.97 3.68 R
5032 5362 3.553096 GCGCACTATACAACCTCAGCTAT 60.553 47.826 0.30 0.0 0.00 2.97 R
5203 5534 4.571984 TCAATTGTCGAACATCAGCATAGG 59.428 41.667 5.13 0.0 0.00 2.57 R
7036 8125 0.172352 CCACAACGTGCCAAGTTTGT 59.828 50.000 0.00 0.0 31.34 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
390 415 3.900941 ACACGATGAAACATTTCCTTGC 58.099 40.909 2.00 0.00 36.36 4.01
469 519 5.675684 AAGAACCAGAAAGAAAAAGGCAA 57.324 34.783 0.00 0.00 0.00 4.52
719 771 3.223674 ACGACTCCAGGGTTTGATTTT 57.776 42.857 0.00 0.00 0.00 1.82
832 897 1.508545 CGATCTGTCCAGTCGTGCT 59.491 57.895 9.57 0.00 31.89 4.40
1221 1299 1.392710 CCTACGCCTCATCCGTCCTT 61.393 60.000 0.00 0.00 39.88 3.36
1345 1423 8.641541 ACAATCAGGAGACAAAATAAACAATGT 58.358 29.630 0.00 0.00 0.00 2.71
1429 1510 3.748083 TGGGATGATAAGCATTGCTCTC 58.252 45.455 12.39 12.21 38.25 3.20
1505 1630 7.142680 TCGGACCACATCTTTTTGTTTATTTC 58.857 34.615 0.00 0.00 0.00 2.17
1508 1633 7.095649 GGACCACATCTTTTTGTTTATTTCTGC 60.096 37.037 0.00 0.00 0.00 4.26
1608 1735 9.632638 ATTTCTTACTGACAATATGGTGCTTAT 57.367 29.630 0.00 0.00 0.00 1.73
1800 1931 2.547211 GGTTGGAGATGATGATCAAGCG 59.453 50.000 0.00 0.00 0.00 4.68
1836 1967 4.879545 TCGGCAGTCTGTCTAAAAGTTTTT 59.120 37.500 6.10 0.00 0.00 1.94
2104 2414 3.836365 TGCTATCGGATTGGACAATGA 57.164 42.857 1.69 0.00 0.00 2.57
2563 2873 3.941483 CAGCAGGGTACAAGGAATAACAG 59.059 47.826 0.00 0.00 0.00 3.16
2761 3079 4.777896 ACCTGGAGCTACTCAGTCAATTAA 59.222 41.667 0.00 0.00 31.08 1.40
2875 3193 0.826062 GCCATAGCAAAATGCCCAGT 59.174 50.000 0.00 0.00 46.52 4.00
2936 3264 1.005867 AAGGCAGTGGCAAAATGCG 60.006 52.632 20.04 0.00 46.21 4.73
3115 3444 4.307432 TCGATGGTGAGAAGAAGTTTGTC 58.693 43.478 0.00 0.00 0.00 3.18
3958 4287 3.467803 ACTGTTGAGGCTTTGTACTGAC 58.532 45.455 0.00 0.00 0.00 3.51
4000 4329 2.939103 GAGAGGTTCAAATAGCATGCGT 59.061 45.455 13.01 1.91 0.00 5.24
4132 4461 4.937620 GCTCAGACAGAAATCCATAACACA 59.062 41.667 0.00 0.00 0.00 3.72
4138 4467 7.819415 CAGACAGAAATCCATAACACACTTCTA 59.181 37.037 0.00 0.00 0.00 2.10
4191 4520 6.720309 TCCCATCTATGTCACAAGAAAATGA 58.280 36.000 0.00 0.00 0.00 2.57
4913 5242 4.617253 AGTGTAGCATAGTTTGGTGTCA 57.383 40.909 0.00 0.00 37.26 3.58
4918 5247 6.036083 GTGTAGCATAGTTTGGTGTCAGTATG 59.964 42.308 0.00 0.00 37.26 2.39
4957 5286 7.094762 GGATAACTAAATGTGCTGTTATAGGCC 60.095 40.741 0.00 0.00 36.23 5.19
5032 5362 6.319658 ACTCTGAAGCTTTGACTGAAATTTGA 59.680 34.615 0.00 0.00 0.00 2.69
5102 5432 3.040795 CGTTCGATGAACCTATGTACCG 58.959 50.000 4.25 0.00 39.14 4.02
5130 5461 5.222130 ACCCATGGTTCAGTAGAAATCAAGT 60.222 40.000 11.73 0.00 35.08 3.16
5203 5534 2.754552 TGTAGCATGCCATTTTGTCCTC 59.245 45.455 15.66 0.00 0.00 3.71
5204 5535 1.188863 AGCATGCCATTTTGTCCTCC 58.811 50.000 15.66 0.00 0.00 4.30
5436 5767 5.068987 TGAAGCTGGCAGTTATCAAAAGTTT 59.931 36.000 17.16 0.00 0.00 2.66
5485 5816 9.399797 TCTAACAGAATCACATGCTTTTGATAT 57.600 29.630 2.02 0.00 31.99 1.63
5645 5976 7.668525 AACTTTAGCTGGAGTACATTTACAC 57.331 36.000 0.00 0.00 0.00 2.90
5646 5977 7.005709 ACTTTAGCTGGAGTACATTTACACT 57.994 36.000 0.00 0.00 0.00 3.55
6226 6560 4.395542 GCCTATTTGATCCATGCTCTGATC 59.604 45.833 3.49 3.49 38.27 2.92
6232 6566 7.943079 TTTGATCCATGCTCTGATCTTTTTA 57.057 32.000 9.99 0.00 38.53 1.52
6340 6676 5.335583 CCAGCATTTGAGTTTGGTTATTCGA 60.336 40.000 0.00 0.00 0.00 3.71
6402 6739 9.323985 TGAATTGCATTTTTAAGTGTTAAAGCT 57.676 25.926 0.00 0.00 36.56 3.74
6506 6883 5.644636 TGTTTGGCCGTTTTAGGTTAGATAG 59.355 40.000 0.00 0.00 0.00 2.08
6508 6885 3.453353 TGGCCGTTTTAGGTTAGATAGCT 59.547 43.478 0.00 0.00 38.39 3.32
6509 6886 4.080751 TGGCCGTTTTAGGTTAGATAGCTT 60.081 41.667 0.00 0.00 35.80 3.74
6511 6888 5.007430 GGCCGTTTTAGGTTAGATAGCTTTC 59.993 44.000 0.00 0.00 35.80 2.62
6512 6889 5.583457 GCCGTTTTAGGTTAGATAGCTTTCA 59.417 40.000 6.94 0.00 35.80 2.69
6513 6890 6.093082 GCCGTTTTAGGTTAGATAGCTTTCAA 59.907 38.462 6.94 0.00 35.80 2.69
6514 6891 7.201705 GCCGTTTTAGGTTAGATAGCTTTCAAT 60.202 37.037 6.94 0.00 35.80 2.57
6647 7300 8.316214 ACCAAAATATAAGACGTCTTTGTAGGA 58.684 33.333 33.82 16.70 37.40 2.94
6727 7811 1.537202 CACCTGCAAGCTTGAACTACC 59.463 52.381 30.39 11.38 0.00 3.18
6826 7910 6.408035 GGAGATCTAGGATCACGTGTCTATA 58.592 44.000 16.51 9.11 0.00 1.31
6827 7911 6.314400 GGAGATCTAGGATCACGTGTCTATAC 59.686 46.154 16.51 2.31 0.00 1.47
6828 7912 7.011499 AGATCTAGGATCACGTGTCTATACT 57.989 40.000 16.51 10.46 0.00 2.12
6829 7913 8.136563 AGATCTAGGATCACGTGTCTATACTA 57.863 38.462 16.51 11.06 0.00 1.82
6883 7967 3.059868 ACACAACATCTTCAGCGTAAACG 60.060 43.478 0.00 0.00 43.27 3.60
6952 8036 2.750888 GCATCGGCGGTCCAGAAAC 61.751 63.158 7.21 0.00 0.00 2.78
6990 8074 7.923888 AGCACTATTCATACATAAACTTGCAG 58.076 34.615 0.00 0.00 0.00 4.41
6997 8081 9.793252 ATTCATACATAAACTTGCAGAATGTTC 57.207 29.630 6.73 0.00 39.31 3.18
6998 8082 8.565896 TCATACATAAACTTGCAGAATGTTCT 57.434 30.769 6.73 0.00 39.31 3.01
6999 8083 9.013229 TCATACATAAACTTGCAGAATGTTCTT 57.987 29.630 6.73 0.00 39.31 2.52
7011 8099 5.631096 GCAGAATGTTCTTTTAGCCTCAAAC 59.369 40.000 0.00 0.00 39.31 2.93
7021 8110 6.479660 TCTTTTAGCCTCAAACTTGCAAAATG 59.520 34.615 0.00 0.00 0.00 2.32
7026 8115 3.486841 CCTCAAACTTGCAAAATGTGACG 59.513 43.478 0.00 0.00 0.00 4.35
7032 8121 2.082366 GCAAAATGTGACGCCGCAG 61.082 57.895 0.00 0.00 36.09 5.18
7036 8125 1.163420 AAATGTGACGCCGCAGTTCA 61.163 50.000 0.00 0.00 36.51 3.18
7052 8141 1.917303 GTTCACAAACTTGGCACGTTG 59.083 47.619 10.32 6.31 32.36 4.10
7053 8142 1.169577 TCACAAACTTGGCACGTTGT 58.830 45.000 10.32 6.94 0.00 3.32
7054 8143 1.135546 TCACAAACTTGGCACGTTGTG 60.136 47.619 22.06 22.06 36.51 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
719 771 4.414182 ACCCTGAATTTATAATCCCGGTCA 59.586 41.667 0.00 0.00 0.00 4.02
1221 1299 0.037303 CCTTGAGCTGCTGGAGGAAA 59.963 55.000 18.40 0.00 0.00 3.13
1429 1510 0.957395 ATTGTTCAGGGCTGTGCGAG 60.957 55.000 0.00 0.00 0.00 5.03
1505 1630 3.152341 AGTTGAACTTCATCCCTTGCAG 58.848 45.455 0.00 0.00 0.00 4.41
1508 1633 7.092716 CCAATTTAGTTGAACTTCATCCCTTG 58.907 38.462 1.97 0.00 40.37 3.61
1800 1931 1.337260 ACTGCCGATGACTGTGAAGAC 60.337 52.381 0.00 0.00 0.00 3.01
1836 1967 7.386851 CCTCTTCTTGTACTTTATCAAGGTCA 58.613 38.462 0.00 0.00 40.67 4.02
2436 2746 4.736793 CACAAACAGATGAACAAGCAGAAC 59.263 41.667 0.00 0.00 0.00 3.01
2439 2749 3.047796 GCACAAACAGATGAACAAGCAG 58.952 45.455 0.00 0.00 0.00 4.24
2510 2820 3.441371 GAACTACTGAGTTGGGGCAACG 61.441 54.545 0.00 0.00 46.23 4.10
2563 2873 1.972198 GGCCTAACCAAACTTGCCC 59.028 57.895 0.00 0.00 38.86 5.36
2658 2976 8.150945 ACTTAGTTAGTTTCAGTGATCACATGT 58.849 33.333 27.02 4.33 31.29 3.21
2661 2979 7.152645 GGACTTAGTTAGTTTCAGTGATCACA 58.847 38.462 27.02 5.13 37.17 3.58
2761 3079 9.920946 ACACAGGTAGGAATGTAATAAATTGAT 57.079 29.630 0.00 0.00 0.00 2.57
2875 3193 2.032054 GCACTTATGCGCAGATTAAGCA 59.968 45.455 22.86 0.84 43.33 3.91
3115 3444 1.536940 AATAACCCCGAAACCAACCG 58.463 50.000 0.00 0.00 0.00 4.44
3958 4287 0.754217 TTGTCGTAGGATCTCCCCCG 60.754 60.000 0.00 0.00 36.42 5.73
4000 4329 6.096705 CCATTGGTGAAGGTATCATAAGCAAA 59.903 38.462 0.00 0.00 40.97 3.68
5032 5362 3.553096 GCGCACTATACAACCTCAGCTAT 60.553 47.826 0.30 0.00 0.00 2.97
5102 5432 6.208599 TGATTTCTACTGAACCATGGGTTTTC 59.791 38.462 18.09 11.53 46.95 2.29
5203 5534 4.571984 TCAATTGTCGAACATCAGCATAGG 59.428 41.667 5.13 0.00 0.00 2.57
5204 5535 5.292834 AGTCAATTGTCGAACATCAGCATAG 59.707 40.000 5.13 0.00 0.00 2.23
5336 5667 5.181245 AGTCCCAACGAAAAACATGACTATG 59.819 40.000 0.00 0.00 40.24 2.23
5436 5767 8.809468 AGACATGTCTGTAGTATGAAAGACTA 57.191 34.615 27.37 0.00 39.80 2.59
5645 5976 6.433766 GTTCCTTGTTTTGATCACTGAAGAG 58.566 40.000 0.00 0.00 0.00 2.85
5646 5977 5.007626 CGTTCCTTGTTTTGATCACTGAAGA 59.992 40.000 0.00 0.00 0.00 2.87
6340 6676 4.464008 CAGTCCAACATAAGGGCACATAT 58.536 43.478 0.00 0.00 31.65 1.78
6402 6739 8.772705 GTGCATTCAAACAGAAAATAAAATCCA 58.227 29.630 0.00 0.00 40.22 3.41
6521 6899 8.526147 CAAATGAAGACAAATCCAGAAAGGTAT 58.474 33.333 0.00 0.00 39.02 2.73
6647 7300 6.509656 TCCGTATCAAAATGTAAGACGCTAT 58.490 36.000 0.00 0.00 0.00 2.97
6727 7811 3.393970 TTCTCTCTGGGGCCAGCG 61.394 66.667 4.39 0.00 43.31 5.18
6785 7869 6.209026 AGATCTCCCTACCATTCTCTCTTTT 58.791 40.000 0.00 0.00 0.00 2.27
6826 7910 6.633325 TGTCCACTCTACCTACTAGTTAGT 57.367 41.667 0.00 1.33 40.24 2.24
6827 7911 7.774157 TGATTGTCCACTCTACCTACTAGTTAG 59.226 40.741 0.00 0.00 0.00 2.34
6828 7912 7.636579 TGATTGTCCACTCTACCTACTAGTTA 58.363 38.462 0.00 0.00 0.00 2.24
6829 7913 6.491383 TGATTGTCCACTCTACCTACTAGTT 58.509 40.000 0.00 0.00 0.00 2.24
6883 7967 7.652507 AGTTACAGTCTAGTGTAAAGCTTGAAC 59.347 37.037 11.07 2.11 42.99 3.18
6933 8017 3.247056 TTTCTGGACCGCCGATGCA 62.247 57.895 0.00 0.00 37.32 3.96
6952 8036 4.337274 TGAATAGTGCTCATGAATGCCAAG 59.663 41.667 4.64 0.00 0.00 3.61
6984 8068 5.048504 TGAGGCTAAAAGAACATTCTGCAAG 60.049 40.000 0.00 0.00 37.65 4.01
6990 8074 6.144563 GCAAGTTTGAGGCTAAAAGAACATTC 59.855 38.462 0.00 0.00 0.00 2.67
6994 8078 4.932146 TGCAAGTTTGAGGCTAAAAGAAC 58.068 39.130 0.00 0.00 0.00 3.01
6995 8079 5.590530 TTGCAAGTTTGAGGCTAAAAGAA 57.409 34.783 0.00 0.00 0.00 2.52
6996 8080 5.590530 TTTGCAAGTTTGAGGCTAAAAGA 57.409 34.783 0.00 0.00 0.00 2.52
6997 8081 6.258507 ACATTTTGCAAGTTTGAGGCTAAAAG 59.741 34.615 0.00 0.00 36.27 2.27
6998 8082 6.036953 CACATTTTGCAAGTTTGAGGCTAAAA 59.963 34.615 0.00 0.00 36.27 1.52
6999 8083 5.523188 CACATTTTGCAAGTTTGAGGCTAAA 59.477 36.000 0.00 0.00 36.87 1.85
7011 8099 1.608093 GCGGCGTCACATTTTGCAAG 61.608 55.000 9.37 0.00 0.00 4.01
7021 8110 2.042520 TTTGTGAACTGCGGCGTCAC 62.043 55.000 18.10 18.10 0.00 3.67
7026 8115 0.594796 CCAAGTTTGTGAACTGCGGC 60.595 55.000 0.00 0.00 45.18 6.53
7032 8121 1.917303 CAACGTGCCAAGTTTGTGAAC 59.083 47.619 0.00 0.00 35.97 3.18
7036 8125 0.172352 CCACAACGTGCCAAGTTTGT 59.828 50.000 0.00 0.00 31.34 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.