Multiple sequence alignment - TraesCS2D01G280800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G280800 chr2D 100.000 3663 0 0 1 3663 352915566 352911904 0.000000e+00 6765.0
1 TraesCS2D01G280800 chr2D 77.315 216 45 4 2139 2352 417087392 417087605 1.380000e-24 124.0
2 TraesCS2D01G280800 chr2D 94.444 54 0 2 1941 1994 27876349 27876399 3.030000e-11 80.5
3 TraesCS2D01G280800 chr2B 92.972 1736 87 12 233 1947 419504815 419503094 0.000000e+00 2497.0
4 TraesCS2D01G280800 chr2B 95.881 607 24 1 2110 2715 419503057 419502451 0.000000e+00 981.0
5 TraesCS2D01G280800 chr2B 90.981 632 54 3 3031 3662 419483510 419482882 0.000000e+00 848.0
6 TraesCS2D01G280800 chr2B 94.194 155 6 3 87 238 478435439 478435285 2.200000e-57 233.0
7 TraesCS2D01G280800 chr2B 94.156 154 8 1 86 238 548773606 548773759 2.200000e-57 233.0
8 TraesCS2D01G280800 chr2B 81.646 158 27 2 2164 2320 488995778 488995934 2.970000e-26 130.0
9 TraesCS2D01G280800 chr2B 92.500 80 6 0 9 88 61496955 61497034 8.310000e-22 115.0
10 TraesCS2D01G280800 chr2B 92.453 53 4 0 1946 1998 748078447 748078395 3.920000e-10 76.8
11 TraesCS2D01G280800 chr2B 93.750 48 3 0 1992 2039 419503106 419503059 5.070000e-09 73.1
12 TraesCS2D01G280800 chr2A 94.488 1143 36 5 822 1947 471014491 471013359 0.000000e+00 1736.0
13 TraesCS2D01G280800 chr2A 92.383 814 44 8 2005 2813 471013354 471012554 0.000000e+00 1144.0
14 TraesCS2D01G280800 chr2A 92.379 433 21 4 408 837 471015081 471014658 1.120000e-169 606.0
15 TraesCS2D01G280800 chr2A 92.676 355 16 6 3309 3662 471010120 471009775 1.520000e-138 503.0
16 TraesCS2D01G280800 chr2A 90.741 216 12 5 3113 3323 471010639 471010427 7.740000e-72 281.0
17 TraesCS2D01G280800 chr2A 93.820 178 11 0 2938 3115 471012109 471011932 6.030000e-68 268.0
18 TraesCS2D01G280800 chr2A 79.630 162 31 2 2167 2327 572841278 572841118 8.310000e-22 115.0
19 TraesCS2D01G280800 chr2A 95.522 67 3 0 2876 2942 471012209 471012143 1.390000e-19 108.0
20 TraesCS2D01G280800 chr2A 75.648 193 41 6 3083 3272 59878365 59878554 1.400000e-14 91.6
21 TraesCS2D01G280800 chr3B 88.283 623 73 0 1301 1923 742447658 742447036 0.000000e+00 747.0
22 TraesCS2D01G280800 chr3B 94.805 154 6 2 87 238 326814394 326814241 4.730000e-59 239.0
23 TraesCS2D01G280800 chr3B 85.222 203 30 0 2141 2343 458011161 458010959 3.710000e-50 209.0
24 TraesCS2D01G280800 chr1A 93.814 194 11 1 978 1170 177524013 177524206 1.290000e-74 291.0
25 TraesCS2D01G280800 chr5B 95.395 152 6 1 87 237 360936449 360936600 1.310000e-59 241.0
26 TraesCS2D01G280800 chr5B 91.781 73 5 1 1336 1408 335520242 335520313 2.330000e-17 100.0
27 TraesCS2D01G280800 chr5B 88.333 60 6 1 1934 1993 6417684 6417742 1.820000e-08 71.3
28 TraesCS2D01G280800 chr4B 95.395 152 6 1 86 236 568662146 568662297 1.310000e-59 241.0
29 TraesCS2D01G280800 chr4B 94.771 153 7 1 87 238 442239169 442239017 1.700000e-58 237.0
30 TraesCS2D01G280800 chr4B 94.156 154 7 2 87 238 396236471 396236624 2.200000e-57 233.0
31 TraesCS2D01G280800 chr5D 93.082 159 7 4 87 243 502838693 502838537 2.850000e-56 230.0
32 TraesCS2D01G280800 chr5D 92.593 54 4 0 1944 1997 41553493 41553440 1.090000e-10 78.7
33 TraesCS2D01G280800 chr5D 95.745 47 2 0 1941 1987 549580990 549581036 3.920000e-10 76.8
34 TraesCS2D01G280800 chr1B 92.025 163 11 2 86 247 1847487 1847326 1.020000e-55 228.0
35 TraesCS2D01G280800 chr1B 89.474 76 8 0 16 91 20696272 20696347 3.010000e-16 97.1
36 TraesCS2D01G280800 chr1B 83.133 83 10 4 1936 2016 476928380 476928460 5.070000e-09 73.1
37 TraesCS2D01G280800 chr6B 81.200 250 31 6 2094 2343 508150029 508149796 1.740000e-43 187.0
38 TraesCS2D01G280800 chr3D 85.385 130 17 2 234 362 496364332 496364204 2.290000e-27 134.0
39 TraesCS2D01G280800 chr3D 93.750 80 5 0 9 88 374057300 374057221 1.790000e-23 121.0
40 TraesCS2D01G280800 chr3D 95.918 49 0 2 1945 1993 609449549 609449595 1.090000e-10 78.7
41 TraesCS2D01G280800 chr7D 93.750 80 5 0 9 88 204017588 204017509 1.790000e-23 121.0
42 TraesCS2D01G280800 chr6A 94.203 69 4 0 1340 1408 603340196 603340128 5.000000e-19 106.0
43 TraesCS2D01G280800 chr7A 90.909 77 6 1 13 88 678601126 678601202 6.470000e-18 102.0
44 TraesCS2D01G280800 chr5A 95.918 49 1 1 1950 1998 609242369 609242322 1.090000e-10 78.7
45 TraesCS2D01G280800 chr7B 86.765 68 5 4 1929 1993 532117965 532118031 5.070000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G280800 chr2D 352911904 352915566 3662 True 6765.000000 6765 100.000000 1 3663 1 chr2D.!!$R1 3662
1 TraesCS2D01G280800 chr2B 419502451 419504815 2364 True 1183.700000 2497 94.201000 233 2715 3 chr2B.!!$R4 2482
2 TraesCS2D01G280800 chr2B 419482882 419483510 628 True 848.000000 848 90.981000 3031 3662 1 chr2B.!!$R1 631
3 TraesCS2D01G280800 chr2A 471009775 471015081 5306 True 663.714286 1736 93.144143 408 3662 7 chr2A.!!$R2 3254
4 TraesCS2D01G280800 chr3B 742447036 742447658 622 True 747.000000 747 88.283000 1301 1923 1 chr3B.!!$R3 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.037590 GTGCACCAACCAGGGATGTA 59.962 55.0 5.22 0.0 43.89 2.29 F
278 279 0.179134 ACCTCAGTTACGCATCGAGC 60.179 55.0 0.00 0.0 40.87 5.03 F
1223 1430 0.308993 GAAGCACTTGTCACCTGCAC 59.691 55.0 4.19 0.0 33.06 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1725 0.745128 ACGAGGTAGAGCTCGAGGTG 60.745 60.0 31.23 8.12 44.85 4.00 R
1669 1883 1.165907 CGTTGAGGCTGCTGAACCAA 61.166 55.0 0.00 0.00 0.00 3.67 R
3111 3679 1.142778 TTTGCCGCGTTTGCTTGAAC 61.143 50.0 4.92 0.00 39.65 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.482169 AAAATTAGGGGAGAATTTCACTTCC 57.518 36.000 0.00 0.00 35.86 3.46
35 36 2.728007 GGGGAGAATTTCACTTCCCTG 58.272 52.381 17.32 0.00 46.77 4.45
36 37 2.621668 GGGGAGAATTTCACTTCCCTGG 60.622 54.545 17.32 0.00 46.77 4.45
37 38 2.095461 GGAGAATTTCACTTCCCTGGC 58.905 52.381 0.00 0.00 0.00 4.85
38 39 2.095461 GAGAATTTCACTTCCCTGGCC 58.905 52.381 0.00 0.00 0.00 5.36
39 40 1.713078 AGAATTTCACTTCCCTGGCCT 59.287 47.619 3.32 0.00 0.00 5.19
40 41 1.821136 GAATTTCACTTCCCTGGCCTG 59.179 52.381 3.32 2.54 0.00 4.85
41 42 0.779997 ATTTCACTTCCCTGGCCTGT 59.220 50.000 3.32 0.00 0.00 4.00
42 43 0.178992 TTTCACTTCCCTGGCCTGTG 60.179 55.000 3.32 0.00 0.00 3.66
43 44 2.674380 CACTTCCCTGGCCTGTGC 60.674 66.667 3.32 0.00 0.00 4.57
44 45 3.177884 ACTTCCCTGGCCTGTGCA 61.178 61.111 3.32 0.00 40.13 4.57
45 46 2.674380 CTTCCCTGGCCTGTGCAC 60.674 66.667 10.75 10.75 40.13 4.57
46 47 4.284550 TTCCCTGGCCTGTGCACC 62.285 66.667 15.69 0.00 40.13 5.01
48 49 4.601794 CCCTGGCCTGTGCACCAA 62.602 66.667 15.69 0.00 40.13 3.67
49 50 3.297620 CCTGGCCTGTGCACCAAC 61.298 66.667 15.69 2.73 40.13 3.77
50 51 3.297620 CTGGCCTGTGCACCAACC 61.298 66.667 15.69 13.03 40.13 3.77
51 52 4.134785 TGGCCTGTGCACCAACCA 62.135 61.111 15.69 15.60 40.13 3.67
52 53 3.297620 GGCCTGTGCACCAACCAG 61.298 66.667 15.69 4.17 40.13 4.00
53 54 3.297620 GCCTGTGCACCAACCAGG 61.298 66.667 15.69 14.95 46.91 4.45
54 55 2.598394 CCTGTGCACCAACCAGGG 60.598 66.667 15.69 1.44 41.69 4.45
55 56 2.515398 CTGTGCACCAACCAGGGA 59.485 61.111 15.69 0.00 43.89 4.20
56 57 1.075482 CTGTGCACCAACCAGGGAT 59.925 57.895 15.69 0.00 43.89 3.85
57 58 1.228521 TGTGCACCAACCAGGGATG 60.229 57.895 15.69 0.00 43.89 3.51
58 59 1.228552 GTGCACCAACCAGGGATGT 60.229 57.895 5.22 0.00 43.89 3.06
59 60 0.037590 GTGCACCAACCAGGGATGTA 59.962 55.000 5.22 0.00 43.89 2.29
60 61 0.998928 TGCACCAACCAGGGATGTAT 59.001 50.000 0.00 0.00 43.89 2.29
61 62 2.092646 GTGCACCAACCAGGGATGTATA 60.093 50.000 5.22 0.00 43.89 1.47
62 63 2.092646 TGCACCAACCAGGGATGTATAC 60.093 50.000 0.00 0.00 43.89 1.47
63 64 2.833794 CACCAACCAGGGATGTATACG 58.166 52.381 0.00 0.00 43.89 3.06
64 65 2.432874 CACCAACCAGGGATGTATACGA 59.567 50.000 0.00 0.00 43.89 3.43
65 66 2.433239 ACCAACCAGGGATGTATACGAC 59.567 50.000 0.00 0.00 43.89 4.34
66 67 2.224209 CCAACCAGGGATGTATACGACC 60.224 54.545 8.94 8.94 0.00 4.79
67 68 2.698797 CAACCAGGGATGTATACGACCT 59.301 50.000 14.75 11.08 0.00 3.85
68 69 3.042059 ACCAGGGATGTATACGACCTT 57.958 47.619 14.75 7.31 0.00 3.50
69 70 3.381335 ACCAGGGATGTATACGACCTTT 58.619 45.455 14.75 3.11 0.00 3.11
70 71 3.778629 ACCAGGGATGTATACGACCTTTT 59.221 43.478 14.75 2.83 0.00 2.27
71 72 4.964262 ACCAGGGATGTATACGACCTTTTA 59.036 41.667 14.75 0.00 0.00 1.52
72 73 5.426185 ACCAGGGATGTATACGACCTTTTAA 59.574 40.000 14.75 0.00 0.00 1.52
73 74 5.989777 CCAGGGATGTATACGACCTTTTAAG 59.010 44.000 14.75 3.98 0.00 1.85
74 75 6.407752 CCAGGGATGTATACGACCTTTTAAGT 60.408 42.308 14.75 0.00 0.00 2.24
75 76 7.201938 CCAGGGATGTATACGACCTTTTAAGTA 60.202 40.741 14.75 0.00 0.00 2.24
76 77 8.365647 CAGGGATGTATACGACCTTTTAAGTAT 58.634 37.037 14.75 0.00 34.58 2.12
77 78 8.365647 AGGGATGTATACGACCTTTTAAGTATG 58.634 37.037 14.75 0.00 32.71 2.39
78 79 8.362639 GGGATGTATACGACCTTTTAAGTATGA 58.637 37.037 14.75 0.00 32.71 2.15
79 80 9.408069 GGATGTATACGACCTTTTAAGTATGAG 57.592 37.037 9.86 0.00 32.71 2.90
80 81 9.962783 GATGTATACGACCTTTTAAGTATGAGT 57.037 33.333 0.00 0.00 32.71 3.41
86 87 7.994194 ACGACCTTTTAAGTATGAGTACTAGG 58.006 38.462 0.00 0.00 40.24 3.02
87 88 7.831193 ACGACCTTTTAAGTATGAGTACTAGGA 59.169 37.037 7.78 0.00 40.24 2.94
88 89 8.344098 CGACCTTTTAAGTATGAGTACTAGGAG 58.656 40.741 7.78 0.00 40.24 3.69
89 90 8.536340 ACCTTTTAAGTATGAGTACTAGGAGG 57.464 38.462 7.78 7.13 40.24 4.30
90 91 8.342270 ACCTTTTAAGTATGAGTACTAGGAGGA 58.658 37.037 7.78 0.00 40.24 3.71
91 92 8.631797 CCTTTTAAGTATGAGTACTAGGAGGAC 58.368 40.741 0.00 0.00 40.24 3.85
92 93 7.798596 TTTAAGTATGAGTACTAGGAGGACG 57.201 40.000 0.00 0.00 40.24 4.79
93 94 4.354893 AGTATGAGTACTAGGAGGACGG 57.645 50.000 0.00 0.00 39.36 4.79
94 95 2.660670 ATGAGTACTAGGAGGACGGG 57.339 55.000 0.00 0.00 0.00 5.28
95 96 0.549950 TGAGTACTAGGAGGACGGGG 59.450 60.000 0.00 0.00 0.00 5.73
96 97 0.822944 GAGTACTAGGAGGACGGGGC 60.823 65.000 0.00 0.00 0.00 5.80
97 98 2.192187 GTACTAGGAGGACGGGGCG 61.192 68.421 0.00 0.00 0.00 6.13
98 99 2.683465 TACTAGGAGGACGGGGCGT 61.683 63.158 0.00 0.00 45.10 5.68
111 112 4.699522 GGCGTCGACCCTTTGGCT 62.700 66.667 10.58 0.00 33.59 4.75
112 113 3.423154 GCGTCGACCCTTTGGCTG 61.423 66.667 10.58 0.00 33.59 4.85
113 114 2.742372 CGTCGACCCTTTGGCTGG 60.742 66.667 10.58 0.00 33.59 4.85
114 115 3.056328 GTCGACCCTTTGGCTGGC 61.056 66.667 3.51 0.00 33.59 4.85
115 116 3.565214 TCGACCCTTTGGCTGGCA 61.565 61.111 0.00 0.00 33.59 4.92
116 117 3.058160 CGACCCTTTGGCTGGCAG 61.058 66.667 10.94 10.94 33.59 4.85
117 118 3.376918 GACCCTTTGGCTGGCAGC 61.377 66.667 30.93 30.93 41.46 5.25
118 119 3.875510 GACCCTTTGGCTGGCAGCT 62.876 63.158 35.73 16.95 41.99 4.24
119 120 3.379445 CCCTTTGGCTGGCAGCTG 61.379 66.667 35.73 22.70 41.99 4.24
120 121 2.282674 CCTTTGGCTGGCAGCTGA 60.283 61.111 35.73 22.74 41.99 4.26
121 122 2.341101 CCTTTGGCTGGCAGCTGAG 61.341 63.158 35.73 27.63 41.99 3.35
122 123 2.282674 TTTGGCTGGCAGCTGAGG 60.283 61.111 35.73 7.28 41.99 3.86
123 124 3.137385 TTTGGCTGGCAGCTGAGGT 62.137 57.895 35.73 0.00 41.99 3.85
124 125 2.645394 TTTGGCTGGCAGCTGAGGTT 62.645 55.000 35.73 0.00 41.99 3.50
125 126 3.060615 GGCTGGCAGCTGAGGTTG 61.061 66.667 35.73 3.07 41.99 3.77
126 127 3.745803 GCTGGCAGCTGAGGTTGC 61.746 66.667 31.37 9.75 46.58 4.17
127 128 2.033757 CTGGCAGCTGAGGTTGCT 59.966 61.111 20.43 0.00 46.51 3.91
132 133 2.033757 AGCTGAGGTTGCTGCCAG 59.966 61.111 0.00 0.00 39.56 4.85
133 134 3.745803 GCTGAGGTTGCTGCCAGC 61.746 66.667 10.45 10.45 44.00 4.85
134 135 3.060615 CTGAGGTTGCTGCCAGCC 61.061 66.667 15.29 0.00 41.51 4.85
135 136 4.666253 TGAGGTTGCTGCCAGCCC 62.666 66.667 15.29 9.16 42.79 5.19
136 137 4.666253 GAGGTTGCTGCCAGCCCA 62.666 66.667 15.29 0.00 42.79 5.36
137 138 4.982701 AGGTTGCTGCCAGCCCAC 62.983 66.667 15.29 10.81 42.79 4.61
146 147 3.636231 CCAGCCCACCCGAGTTCA 61.636 66.667 0.00 0.00 0.00 3.18
147 148 2.429930 CAGCCCACCCGAGTTCAA 59.570 61.111 0.00 0.00 0.00 2.69
148 149 1.672356 CAGCCCACCCGAGTTCAAG 60.672 63.158 0.00 0.00 0.00 3.02
149 150 2.147387 AGCCCACCCGAGTTCAAGT 61.147 57.895 0.00 0.00 0.00 3.16
150 151 1.671379 GCCCACCCGAGTTCAAGTC 60.671 63.158 0.00 0.00 0.00 3.01
151 152 1.003718 CCCACCCGAGTTCAAGTCC 60.004 63.158 0.00 0.00 0.00 3.85
152 153 1.003718 CCACCCGAGTTCAAGTCCC 60.004 63.158 0.00 0.00 0.00 4.46
153 154 1.374252 CACCCGAGTTCAAGTCCCG 60.374 63.158 0.00 0.00 0.00 5.14
154 155 2.264794 CCCGAGTTCAAGTCCCGG 59.735 66.667 0.00 0.00 39.85 5.73
155 156 2.434359 CCGAGTTCAAGTCCCGGC 60.434 66.667 0.00 0.00 33.47 6.13
156 157 2.657237 CGAGTTCAAGTCCCGGCT 59.343 61.111 0.00 0.00 0.00 5.52
157 158 1.004918 CGAGTTCAAGTCCCGGCTT 60.005 57.895 0.00 0.00 0.00 4.35
158 159 1.291877 CGAGTTCAAGTCCCGGCTTG 61.292 60.000 13.87 13.87 45.18 4.01
159 160 0.955919 GAGTTCAAGTCCCGGCTTGG 60.956 60.000 18.28 4.22 44.26 3.61
160 161 1.072505 GTTCAAGTCCCGGCTTGGA 59.927 57.895 18.28 9.78 44.26 3.53
165 166 4.309950 GTCCCGGCTTGGACGTGT 62.310 66.667 9.01 0.00 44.98 4.49
166 167 4.308458 TCCCGGCTTGGACGTGTG 62.308 66.667 0.00 0.00 42.00 3.82
168 169 4.619227 CCGGCTTGGACGTGTGGT 62.619 66.667 0.00 0.00 42.00 4.16
169 170 3.345808 CGGCTTGGACGTGTGGTG 61.346 66.667 0.00 0.00 0.00 4.17
170 171 3.660111 GGCTTGGACGTGTGGTGC 61.660 66.667 0.00 0.00 37.52 5.01
171 172 2.591715 GCTTGGACGTGTGGTGCT 60.592 61.111 0.00 0.00 37.93 4.40
172 173 2.607892 GCTTGGACGTGTGGTGCTC 61.608 63.158 0.00 0.00 37.93 4.26
173 174 2.279851 TTGGACGTGTGGTGCTCG 60.280 61.111 0.00 0.00 37.93 5.03
174 175 4.961511 TGGACGTGTGGTGCTCGC 62.962 66.667 0.00 0.00 37.93 5.03
175 176 4.961511 GGACGTGTGGTGCTCGCA 62.962 66.667 0.00 0.00 37.58 5.10
176 177 3.406361 GACGTGTGGTGCTCGCAG 61.406 66.667 0.00 0.00 36.43 5.18
177 178 3.841379 GACGTGTGGTGCTCGCAGA 62.841 63.158 0.00 0.00 36.43 4.26
211 212 3.934457 AAAAATGCCAACGAGGGTTAG 57.066 42.857 0.00 0.00 38.09 2.34
212 213 1.173913 AAATGCCAACGAGGGTTAGC 58.826 50.000 0.00 0.00 40.57 3.09
213 214 0.679960 AATGCCAACGAGGGTTAGCC 60.680 55.000 0.00 0.00 39.61 3.93
225 226 1.822506 GGTTAGCCCTTGAGTTGGTC 58.177 55.000 0.00 0.00 0.00 4.02
226 227 1.351350 GGTTAGCCCTTGAGTTGGTCT 59.649 52.381 0.00 0.00 0.00 3.85
227 228 2.615747 GGTTAGCCCTTGAGTTGGTCTC 60.616 54.545 0.00 0.00 43.03 3.36
273 274 5.944007 AGGATTTTTAACCTCAGTTACGCAT 59.056 36.000 0.00 0.00 38.19 4.73
278 279 0.179134 ACCTCAGTTACGCATCGAGC 60.179 55.000 0.00 0.00 40.87 5.03
279 280 0.872021 CCTCAGTTACGCATCGAGCC 60.872 60.000 0.00 0.00 41.38 4.70
296 297 4.520874 TCGAGCCTAGTCCTCAATGATAAG 59.479 45.833 8.00 0.00 0.00 1.73
301 302 5.053145 CCTAGTCCTCAATGATAAGTGCAC 58.947 45.833 9.40 9.40 0.00 4.57
307 308 4.504461 CCTCAATGATAAGTGCACGAGTAC 59.496 45.833 12.01 4.30 0.00 2.73
308 309 5.066968 TCAATGATAAGTGCACGAGTACA 57.933 39.130 12.01 9.89 32.20 2.90
315 316 6.480651 TGATAAGTGCACGAGTACAAGAAAAA 59.519 34.615 12.01 0.00 32.20 1.94
320 321 3.558418 GCACGAGTACAAGAAAAACCTGA 59.442 43.478 0.00 0.00 0.00 3.86
325 326 5.348997 CGAGTACAAGAAAAACCTGATCCTC 59.651 44.000 0.00 0.00 0.00 3.71
328 329 7.060421 AGTACAAGAAAAACCTGATCCTCAAA 58.940 34.615 0.00 0.00 0.00 2.69
340 341 8.986929 ACCTGATCCTCAAAAATAAATAGGAG 57.013 34.615 0.00 0.00 39.62 3.69
376 377 6.494893 TTCGTGAGGATTTAAATTCAGGTG 57.505 37.500 16.43 6.48 0.00 4.00
379 380 7.162761 TCGTGAGGATTTAAATTCAGGTGTTA 58.837 34.615 16.43 2.23 0.00 2.41
695 696 1.404035 GGTGTGGCGTTTTCAGTCTTT 59.596 47.619 0.00 0.00 0.00 2.52
707 708 7.066505 CGTTTTCAGTCTTTCTCTAGCTTTTC 58.933 38.462 0.00 0.00 0.00 2.29
713 714 6.708054 CAGTCTTTCTCTAGCTTTTCTTTGGA 59.292 38.462 0.00 0.00 0.00 3.53
714 715 6.708502 AGTCTTTCTCTAGCTTTTCTTTGGAC 59.291 38.462 0.00 0.00 0.00 4.02
715 716 6.483640 GTCTTTCTCTAGCTTTTCTTTGGACA 59.516 38.462 0.00 0.00 0.00 4.02
716 717 7.012421 GTCTTTCTCTAGCTTTTCTTTGGACAA 59.988 37.037 0.00 0.00 0.00 3.18
717 718 7.721399 TCTTTCTCTAGCTTTTCTTTGGACAAT 59.279 33.333 0.00 0.00 0.00 2.71
718 719 7.823745 TTCTCTAGCTTTTCTTTGGACAATT 57.176 32.000 0.00 0.00 0.00 2.32
721 722 6.068010 TCTAGCTTTTCTTTGGACAATTGGA 58.932 36.000 10.83 0.00 0.00 3.53
747 748 2.168496 TCTTTCCACGACTCCGATTCT 58.832 47.619 0.00 0.00 39.50 2.40
789 790 0.740516 TTGCAGCAATCGCGATCAGA 60.741 50.000 23.92 4.12 45.49 3.27
809 810 3.825014 AGAGCGTCTGAGGTGTTAAGTTA 59.175 43.478 0.00 0.00 0.00 2.24
817 818 6.814146 GTCTGAGGTGTTAAGTTATCCTCTTG 59.186 42.308 20.14 15.56 43.34 3.02
848 1034 2.502213 TGATGTTACGGCGTAGATGG 57.498 50.000 20.01 0.00 0.00 3.51
984 1171 4.282950 TCCACGATAGCTACTTTGTACG 57.717 45.455 0.00 0.00 42.67 3.67
1028 1215 1.672356 GCACTGCCAACACCGATCT 60.672 57.895 0.00 0.00 0.00 2.75
1176 1373 5.446143 AACAACTAGCTGGATCGATCTAG 57.554 43.478 28.83 28.83 38.31 2.43
1183 1380 5.444744 AGCTGGATCGATCTAGGTATACT 57.555 43.478 33.57 21.12 42.98 2.12
1221 1428 1.312815 AAGAAGCACTTGTCACCTGC 58.687 50.000 0.00 0.00 37.45 4.85
1223 1430 0.308993 GAAGCACTTGTCACCTGCAC 59.691 55.000 4.19 0.00 33.06 4.57
1234 1441 2.096417 GTCACCTGCACGTACACATTTC 60.096 50.000 0.00 0.00 0.00 2.17
1271 1481 9.217278 TGCATGCACTTGATTAATTAATTGTTT 57.783 25.926 18.46 0.00 0.00 2.83
1284 1494 9.994432 TTAATTAATTGTTTTGTTTGTGCTTGG 57.006 25.926 11.05 0.00 0.00 3.61
1327 1541 1.552799 TTGGGCTGCTCTCGATTCCA 61.553 55.000 0.00 0.00 0.00 3.53
1511 1725 1.815421 ATCGTCGCCACCTTCATGC 60.815 57.895 0.00 0.00 0.00 4.06
1748 1962 3.417275 CTTCTCATCGCCGCCGTCT 62.417 63.158 0.00 0.00 35.54 4.18
1812 2026 3.660111 GCTGGTGCGTTGGGACAC 61.660 66.667 0.00 0.00 39.29 3.67
1934 2148 1.286354 ACGTACGTCCCGTTGCAATG 61.286 55.000 16.72 11.90 41.54 2.82
1935 2149 1.286354 CGTACGTCCCGTTGCAATGT 61.286 55.000 17.19 1.69 41.54 2.71
1936 2150 0.869730 GTACGTCCCGTTGCAATGTT 59.130 50.000 17.19 0.00 41.54 2.71
1937 2151 2.067766 GTACGTCCCGTTGCAATGTTA 58.932 47.619 17.19 2.18 41.54 2.41
1938 2152 0.869730 ACGTCCCGTTGCAATGTTAC 59.130 50.000 17.19 12.86 36.35 2.50
1939 2153 0.869068 CGTCCCGTTGCAATGTTACA 59.131 50.000 17.19 0.00 0.00 2.41
1940 2154 1.466950 CGTCCCGTTGCAATGTTACAT 59.533 47.619 17.19 0.00 0.00 2.29
1941 2155 2.095466 CGTCCCGTTGCAATGTTACATT 60.095 45.455 17.19 4.56 0.00 2.71
1942 2156 3.241701 GTCCCGTTGCAATGTTACATTG 58.758 45.455 27.86 27.86 0.00 2.82
1943 2157 3.057876 GTCCCGTTGCAATGTTACATTGA 60.058 43.478 33.86 19.59 0.00 2.57
1944 2158 3.570125 TCCCGTTGCAATGTTACATTGAA 59.430 39.130 33.86 25.14 0.00 2.69
1945 2159 4.219507 TCCCGTTGCAATGTTACATTGAAT 59.780 37.500 33.86 1.83 0.00 2.57
1946 2160 4.928615 CCCGTTGCAATGTTACATTGAATT 59.071 37.500 33.86 2.31 0.00 2.17
1947 2161 5.407995 CCCGTTGCAATGTTACATTGAATTT 59.592 36.000 33.86 1.57 0.00 1.82
1948 2162 6.587990 CCCGTTGCAATGTTACATTGAATTTA 59.412 34.615 33.86 12.56 0.00 1.40
1949 2163 7.277539 CCCGTTGCAATGTTACATTGAATTTAT 59.722 33.333 33.86 0.00 0.00 1.40
1950 2164 8.655092 CCGTTGCAATGTTACATTGAATTTATT 58.345 29.630 33.86 0.00 0.00 1.40
1976 2190 7.671495 ATTTGAATTGTTTGGATTGCTTACC 57.329 32.000 0.00 0.00 0.00 2.85
1977 2191 5.798125 TGAATTGTTTGGATTGCTTACCA 57.202 34.783 0.00 0.00 0.00 3.25
1978 2192 5.537188 TGAATTGTTTGGATTGCTTACCAC 58.463 37.500 0.00 0.00 35.81 4.16
1979 2193 5.069648 TGAATTGTTTGGATTGCTTACCACA 59.930 36.000 0.00 0.00 35.81 4.17
1980 2194 5.743636 ATTGTTTGGATTGCTTACCACAT 57.256 34.783 0.00 0.00 35.81 3.21
1981 2195 4.517952 TGTTTGGATTGCTTACCACATG 57.482 40.909 0.00 0.00 35.81 3.21
1982 2196 3.894427 TGTTTGGATTGCTTACCACATGT 59.106 39.130 0.00 0.00 35.81 3.21
1983 2197 4.236935 GTTTGGATTGCTTACCACATGTG 58.763 43.478 19.31 19.31 35.81 3.21
1984 2198 3.153369 TGGATTGCTTACCACATGTGT 57.847 42.857 23.79 14.29 0.00 3.72
1985 2199 3.081061 TGGATTGCTTACCACATGTGTC 58.919 45.455 23.79 11.95 0.00 3.67
1986 2200 3.081061 GGATTGCTTACCACATGTGTCA 58.919 45.455 23.79 8.71 0.00 3.58
1987 2201 3.696051 GGATTGCTTACCACATGTGTCAT 59.304 43.478 23.79 11.74 0.00 3.06
1988 2202 4.439153 GGATTGCTTACCACATGTGTCATG 60.439 45.833 23.79 11.29 0.00 3.07
1989 2203 3.138884 TGCTTACCACATGTGTCATGT 57.861 42.857 23.79 16.29 0.00 3.21
1990 2204 2.813172 TGCTTACCACATGTGTCATGTG 59.187 45.455 26.20 26.20 46.49 3.21
2039 2257 5.303971 CCATGATTCATCACTTCCTACTCC 58.696 45.833 0.00 0.00 40.03 3.85
2043 2262 9.029368 CATGATTCATCACTTCCTACTCCTATA 57.971 37.037 0.00 0.00 40.03 1.31
2053 2272 5.899120 TCCTACTCCTATATGTGATTCGC 57.101 43.478 0.00 0.00 0.00 4.70
2062 2281 7.693952 TCCTATATGTGATTCGCAAAAAGAAC 58.306 34.615 3.67 0.00 0.00 3.01
2068 2287 6.272318 TGTGATTCGCAAAAAGAACAAGATT 58.728 32.000 0.00 0.00 0.00 2.40
2078 2297 9.196552 GCAAAAAGAACAAGATTATTTGCTACT 57.803 29.630 11.74 0.00 44.54 2.57
2121 2340 1.740585 TCAATGGCCGGACATTTTACG 59.259 47.619 33.36 21.29 38.94 3.18
2126 2345 1.536331 GGCCGGACATTTTACGTTTGA 59.464 47.619 5.05 0.00 0.00 2.69
2183 2402 2.815647 GCACACTCAGCTACGGCC 60.816 66.667 0.00 0.00 39.73 6.13
2470 2689 3.986006 GACGTCGTGGGCCTCACA 61.986 66.667 20.10 0.81 46.36 3.58
2485 2704 3.768922 ACAGGCGCTCTCCTCAGC 61.769 66.667 7.64 0.00 33.25 4.26
2497 2716 4.731612 CTCAGCTGCACGGCGACT 62.732 66.667 16.62 0.00 37.29 4.18
2553 2772 0.034198 TCAAAGATCGGCGGTGACAA 59.966 50.000 7.21 0.00 0.00 3.18
2644 2863 1.414919 ACCTACAGTTCCGTGAAGCAA 59.585 47.619 0.00 0.00 0.00 3.91
2702 2922 4.832608 GGTGGGAGCTTACCGCGG 62.833 72.222 26.86 26.86 45.59 6.46
2718 2938 1.505425 GCGGTGAAAACTTACGGACT 58.495 50.000 0.00 0.00 0.00 3.85
2719 2939 1.193874 GCGGTGAAAACTTACGGACTG 59.806 52.381 0.00 0.00 0.00 3.51
2722 2942 3.064931 GGTGAAAACTTACGGACTGGAG 58.935 50.000 0.00 0.00 0.00 3.86
2725 2945 4.573607 GTGAAAACTTACGGACTGGAGTTT 59.426 41.667 10.55 10.55 42.36 2.66
2727 2947 5.648960 TGAAAACTTACGGACTGGAGTTTTT 59.351 36.000 21.67 8.68 46.47 1.94
2731 2951 5.536260 ACTTACGGACTGGAGTTTTTCTAC 58.464 41.667 0.00 0.00 0.00 2.59
2732 2952 5.303845 ACTTACGGACTGGAGTTTTTCTACT 59.696 40.000 0.00 0.00 0.00 2.57
2734 2954 5.796424 ACGGACTGGAGTTTTTCTACTAA 57.204 39.130 0.00 0.00 0.00 2.24
2756 2978 7.772757 ACTAATTCTCCTCTGAATTTAGCTTGG 59.227 37.037 7.61 0.00 42.06 3.61
2775 2997 1.065782 GGGCCTTCTCCTCTTTCAGTC 60.066 57.143 0.84 0.00 0.00 3.51
2776 2998 1.625818 GGCCTTCTCCTCTTTCAGTCA 59.374 52.381 0.00 0.00 0.00 3.41
2786 3008 3.817084 CCTCTTTCAGTCAGATGTTGCAA 59.183 43.478 0.00 0.00 0.00 4.08
2787 3009 4.458295 CCTCTTTCAGTCAGATGTTGCAAT 59.542 41.667 0.59 0.00 0.00 3.56
2790 3012 5.766670 TCTTTCAGTCAGATGTTGCAATCTT 59.233 36.000 0.59 0.00 34.60 2.40
2798 3020 3.562973 AGATGTTGCAATCTTATCCTGCG 59.437 43.478 0.59 0.00 38.97 5.18
2808 3030 5.931441 ATCTTATCCTGCGAGTTTAATGC 57.069 39.130 0.00 0.00 0.00 3.56
2809 3031 4.127171 TCTTATCCTGCGAGTTTAATGCC 58.873 43.478 0.00 0.00 0.00 4.40
2810 3032 2.418368 ATCCTGCGAGTTTAATGCCA 57.582 45.000 0.00 0.00 0.00 4.92
2811 3033 2.418368 TCCTGCGAGTTTAATGCCAT 57.582 45.000 0.00 0.00 0.00 4.40
2812 3034 3.552132 TCCTGCGAGTTTAATGCCATA 57.448 42.857 0.00 0.00 0.00 2.74
2813 3035 4.085357 TCCTGCGAGTTTAATGCCATAT 57.915 40.909 0.00 0.00 0.00 1.78
2814 3036 4.460263 TCCTGCGAGTTTAATGCCATATT 58.540 39.130 0.00 0.00 0.00 1.28
2815 3037 4.887071 TCCTGCGAGTTTAATGCCATATTT 59.113 37.500 0.00 0.00 0.00 1.40
2816 3038 5.359576 TCCTGCGAGTTTAATGCCATATTTT 59.640 36.000 0.00 0.00 0.00 1.82
2817 3039 6.042143 CCTGCGAGTTTAATGCCATATTTTT 58.958 36.000 0.00 0.00 0.00 1.94
2848 3070 6.435164 AGGTTAATGCCATAAAATCAGTCCT 58.565 36.000 0.00 0.00 0.00 3.85
2859 3081 5.499004 AAAATCAGTCCTTAGGTGTAGCA 57.501 39.130 0.00 0.00 0.00 3.49
2878 3100 4.035017 AGCAAAAACAATCGAAACGTCTG 58.965 39.130 0.00 0.00 0.00 3.51
2919 3449 0.037303 CTTGTGGGTCCTGCTGTCAT 59.963 55.000 0.00 0.00 0.00 3.06
2933 3463 3.758023 TGCTGTCATGAGTAAATTGGTGG 59.242 43.478 0.00 0.00 0.00 4.61
2971 3539 7.508296 GGTCCATACCCTAATAAGTAGACTCAA 59.492 40.741 0.00 0.00 40.21 3.02
2976 3544 5.905913 ACCCTAATAAGTAGACTCAAGGCAT 59.094 40.000 0.00 0.00 30.50 4.40
2986 3554 3.529319 AGACTCAAGGCATCCCCTAAAAT 59.471 43.478 0.00 0.00 45.62 1.82
2994 3562 6.189036 AGGCATCCCCTAAAATAAGTAGAC 57.811 41.667 0.00 0.00 44.08 2.59
3041 3609 1.679139 TTCGGGCAATGCTATTCAGG 58.321 50.000 4.82 0.00 0.00 3.86
3111 3679 0.592637 TGCTGGAGCGTGACAATTTG 59.407 50.000 0.00 0.00 45.83 2.32
3123 4986 4.546081 CGTGACAATTTGTTCAAGCAAACG 60.546 41.667 3.08 1.75 40.58 3.60
3153 5016 1.879380 TCACAGCAAAATCCCTTCGTG 59.121 47.619 0.00 0.00 0.00 4.35
3160 5023 4.825085 AGCAAAATCCCTTCGTGTTAAGAA 59.175 37.500 0.00 0.00 0.00 2.52
3248 5112 1.139498 TGTCATCCTCCCCAGGCAAA 61.139 55.000 0.00 0.00 40.12 3.68
3253 5120 1.065410 TCCTCCCCAGGCAAAGTTCA 61.065 55.000 0.00 0.00 40.12 3.18
3277 5144 5.124936 ACTGGTTATTGCGGTCCTATTTTTC 59.875 40.000 0.00 0.00 0.00 2.29
3278 5145 5.258051 TGGTTATTGCGGTCCTATTTTTCT 58.742 37.500 0.00 0.00 0.00 2.52
3279 5146 5.124776 TGGTTATTGCGGTCCTATTTTTCTG 59.875 40.000 0.00 0.00 0.00 3.02
3280 5147 5.124936 GGTTATTGCGGTCCTATTTTTCTGT 59.875 40.000 0.00 0.00 0.00 3.41
3283 5150 6.827586 ATTGCGGTCCTATTTTTCTGTAAA 57.172 33.333 0.00 0.00 0.00 2.01
3372 5561 4.769345 TGGTTGAATTCTTTTGGGCTTT 57.231 36.364 7.05 0.00 0.00 3.51
3392 5581 5.220605 GCTTTATTCGAACTTATGTCCGCTT 60.221 40.000 0.00 0.00 0.00 4.68
3405 5594 2.034879 CCGCTTGGTTCAGCATCGT 61.035 57.895 0.00 0.00 40.09 3.73
3441 5630 7.414540 GGTCAACCATCTTGTTGTCTTCATATC 60.415 40.741 4.07 0.00 44.66 1.63
3468 5657 4.634004 CCGAAGTTAGCATGGTGTTATTCA 59.366 41.667 7.89 0.00 0.00 2.57
3589 5778 1.830477 GAGGCAGAGGTGAGTGAGAAT 59.170 52.381 0.00 0.00 0.00 2.40
3601 5790 3.256879 TGAGTGAGAATGACAGAGTGGAC 59.743 47.826 0.00 0.00 0.00 4.02
3637 5826 4.023193 ACTTTCATGGTGATTTCAACGTCC 60.023 41.667 0.00 0.00 36.03 4.79
3662 5851 5.702865 AGTCATTGATTGTTGTGGATTTCG 58.297 37.500 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.038302 GGGAAGTGAAATTCTCCCCTAATTTTT 60.038 37.037 7.38 0.00 36.82 1.94
8 9 6.440647 GGGAAGTGAAATTCTCCCCTAATTTT 59.559 38.462 7.38 0.00 36.82 1.82
9 10 5.958380 GGGAAGTGAAATTCTCCCCTAATTT 59.042 40.000 7.38 0.00 38.82 1.82
10 11 5.256389 AGGGAAGTGAAATTCTCCCCTAATT 59.744 40.000 13.33 0.00 40.65 1.40
11 12 4.796265 AGGGAAGTGAAATTCTCCCCTAAT 59.204 41.667 13.33 0.00 40.65 1.73
12 13 4.018415 CAGGGAAGTGAAATTCTCCCCTAA 60.018 45.833 13.33 0.00 40.49 2.69
13 14 3.523564 CAGGGAAGTGAAATTCTCCCCTA 59.476 47.826 13.33 0.00 40.49 3.53
14 15 2.310052 CAGGGAAGTGAAATTCTCCCCT 59.690 50.000 13.33 9.70 43.03 4.79
15 16 2.621668 CCAGGGAAGTGAAATTCTCCCC 60.622 54.545 13.33 7.87 38.12 4.81
16 17 2.728007 CCAGGGAAGTGAAATTCTCCC 58.272 52.381 9.97 9.97 37.67 4.30
17 18 2.095461 GCCAGGGAAGTGAAATTCTCC 58.905 52.381 0.00 0.00 29.23 3.71
18 19 2.095461 GGCCAGGGAAGTGAAATTCTC 58.905 52.381 0.00 0.00 0.00 2.87
19 20 1.713078 AGGCCAGGGAAGTGAAATTCT 59.287 47.619 5.01 0.00 0.00 2.40
20 21 1.821136 CAGGCCAGGGAAGTGAAATTC 59.179 52.381 5.01 0.00 0.00 2.17
21 22 1.147817 ACAGGCCAGGGAAGTGAAATT 59.852 47.619 5.01 0.00 0.00 1.82
22 23 0.779997 ACAGGCCAGGGAAGTGAAAT 59.220 50.000 5.01 0.00 0.00 2.17
23 24 0.178992 CACAGGCCAGGGAAGTGAAA 60.179 55.000 5.01 0.00 32.14 2.69
24 25 1.455849 CACAGGCCAGGGAAGTGAA 59.544 57.895 5.01 0.00 32.14 3.18
25 26 3.160585 CACAGGCCAGGGAAGTGA 58.839 61.111 5.01 0.00 32.14 3.41
26 27 2.674380 GCACAGGCCAGGGAAGTG 60.674 66.667 5.01 4.81 0.00 3.16
27 28 3.177884 TGCACAGGCCAGGGAAGT 61.178 61.111 5.01 0.00 40.13 3.01
28 29 2.674380 GTGCACAGGCCAGGGAAG 60.674 66.667 13.17 0.00 40.13 3.46
29 30 4.284550 GGTGCACAGGCCAGGGAA 62.285 66.667 20.43 0.00 40.13 3.97
31 32 4.601794 TTGGTGCACAGGCCAGGG 62.602 66.667 20.43 0.00 40.13 4.45
32 33 3.297620 GTTGGTGCACAGGCCAGG 61.298 66.667 20.43 0.00 40.13 4.45
33 34 3.297620 GGTTGGTGCACAGGCCAG 61.298 66.667 20.43 0.00 40.13 4.85
34 35 4.134785 TGGTTGGTGCACAGGCCA 62.135 61.111 20.43 18.80 40.13 5.36
35 36 3.297620 CTGGTTGGTGCACAGGCC 61.298 66.667 20.43 16.43 40.13 5.19
36 37 3.297620 CCTGGTTGGTGCACAGGC 61.298 66.667 20.43 7.19 44.55 4.85
38 39 1.075482 ATCCCTGGTTGGTGCACAG 59.925 57.895 20.43 6.74 0.00 3.66
39 40 1.228521 CATCCCTGGTTGGTGCACA 60.229 57.895 20.43 1.62 0.00 4.57
40 41 0.037590 TACATCCCTGGTTGGTGCAC 59.962 55.000 8.80 8.80 0.00 4.57
41 42 0.998928 ATACATCCCTGGTTGGTGCA 59.001 50.000 0.00 0.00 0.00 4.57
42 43 2.572290 GTATACATCCCTGGTTGGTGC 58.428 52.381 0.00 0.00 0.00 5.01
43 44 2.432874 TCGTATACATCCCTGGTTGGTG 59.567 50.000 3.32 0.00 0.00 4.17
44 45 2.433239 GTCGTATACATCCCTGGTTGGT 59.567 50.000 3.32 0.00 0.00 3.67
45 46 2.224209 GGTCGTATACATCCCTGGTTGG 60.224 54.545 3.32 0.00 0.00 3.77
46 47 2.698797 AGGTCGTATACATCCCTGGTTG 59.301 50.000 3.32 0.00 0.00 3.77
47 48 3.042059 AGGTCGTATACATCCCTGGTT 57.958 47.619 3.32 0.00 0.00 3.67
48 49 2.769602 AGGTCGTATACATCCCTGGT 57.230 50.000 3.32 0.00 0.00 4.00
49 50 4.417426 AAAAGGTCGTATACATCCCTGG 57.583 45.455 3.32 0.00 0.00 4.45
50 51 6.579865 ACTTAAAAGGTCGTATACATCCCTG 58.420 40.000 3.32 0.00 0.00 4.45
51 52 6.803366 ACTTAAAAGGTCGTATACATCCCT 57.197 37.500 3.32 1.61 0.00 4.20
52 53 8.362639 TCATACTTAAAAGGTCGTATACATCCC 58.637 37.037 3.32 0.00 0.00 3.85
53 54 9.408069 CTCATACTTAAAAGGTCGTATACATCC 57.592 37.037 3.32 4.58 0.00 3.51
54 55 9.962783 ACTCATACTTAAAAGGTCGTATACATC 57.037 33.333 3.32 0.00 0.00 3.06
60 61 9.113838 CCTAGTACTCATACTTAAAAGGTCGTA 57.886 37.037 0.00 0.00 41.99 3.43
61 62 7.831193 TCCTAGTACTCATACTTAAAAGGTCGT 59.169 37.037 0.00 0.00 41.99 4.34
62 63 8.218338 TCCTAGTACTCATACTTAAAAGGTCG 57.782 38.462 0.00 0.00 41.99 4.79
63 64 8.631797 CCTCCTAGTACTCATACTTAAAAGGTC 58.368 40.741 0.00 0.00 41.99 3.85
64 65 8.342270 TCCTCCTAGTACTCATACTTAAAAGGT 58.658 37.037 0.00 0.00 41.99 3.50
65 66 8.631797 GTCCTCCTAGTACTCATACTTAAAAGG 58.368 40.741 0.00 0.00 41.99 3.11
66 67 8.344098 CGTCCTCCTAGTACTCATACTTAAAAG 58.656 40.741 0.00 0.00 41.99 2.27
67 68 7.284034 CCGTCCTCCTAGTACTCATACTTAAAA 59.716 40.741 0.00 0.00 41.99 1.52
68 69 6.769822 CCGTCCTCCTAGTACTCATACTTAAA 59.230 42.308 0.00 0.00 41.99 1.52
69 70 6.294473 CCGTCCTCCTAGTACTCATACTTAA 58.706 44.000 0.00 0.00 41.99 1.85
70 71 5.221803 CCCGTCCTCCTAGTACTCATACTTA 60.222 48.000 0.00 0.00 41.99 2.24
71 72 4.446023 CCCGTCCTCCTAGTACTCATACTT 60.446 50.000 0.00 0.00 41.99 2.24
72 73 3.072768 CCCGTCCTCCTAGTACTCATACT 59.927 52.174 0.00 0.00 44.22 2.12
73 74 3.410508 CCCGTCCTCCTAGTACTCATAC 58.589 54.545 0.00 0.00 0.00 2.39
74 75 2.374504 CCCCGTCCTCCTAGTACTCATA 59.625 54.545 0.00 0.00 0.00 2.15
75 76 1.145325 CCCCGTCCTCCTAGTACTCAT 59.855 57.143 0.00 0.00 0.00 2.90
76 77 0.549950 CCCCGTCCTCCTAGTACTCA 59.450 60.000 0.00 0.00 0.00 3.41
77 78 0.822944 GCCCCGTCCTCCTAGTACTC 60.823 65.000 0.00 0.00 0.00 2.59
78 79 1.229643 GCCCCGTCCTCCTAGTACT 59.770 63.158 0.00 0.00 0.00 2.73
79 80 2.192187 CGCCCCGTCCTCCTAGTAC 61.192 68.421 0.00 0.00 0.00 2.73
80 81 2.194056 CGCCCCGTCCTCCTAGTA 59.806 66.667 0.00 0.00 0.00 1.82
81 82 4.057943 ACGCCCCGTCCTCCTAGT 62.058 66.667 0.00 0.00 33.69 2.57
94 95 4.699522 AGCCAAAGGGTCGACGCC 62.700 66.667 26.94 19.81 36.17 5.68
95 96 3.423154 CAGCCAAAGGGTCGACGC 61.423 66.667 23.85 23.85 36.17 5.19
96 97 2.742372 CCAGCCAAAGGGTCGACG 60.742 66.667 9.92 0.00 36.17 5.12
97 98 3.056328 GCCAGCCAAAGGGTCGAC 61.056 66.667 7.13 7.13 36.17 4.20
98 99 3.551496 CTGCCAGCCAAAGGGTCGA 62.551 63.158 0.00 0.00 36.17 4.20
99 100 3.058160 CTGCCAGCCAAAGGGTCG 61.058 66.667 0.00 0.00 36.17 4.79
100 101 3.376918 GCTGCCAGCCAAAGGGTC 61.377 66.667 5.06 0.00 34.48 4.46
101 102 3.907130 AGCTGCCAGCCAAAGGGT 61.907 61.111 14.25 0.00 43.77 4.34
102 103 3.379445 CAGCTGCCAGCCAAAGGG 61.379 66.667 14.25 0.00 43.77 3.95
103 104 2.282674 TCAGCTGCCAGCCAAAGG 60.283 61.111 14.25 0.00 43.77 3.11
104 105 2.341101 CCTCAGCTGCCAGCCAAAG 61.341 63.158 14.25 8.28 43.77 2.77
105 106 2.282674 CCTCAGCTGCCAGCCAAA 60.283 61.111 14.25 0.00 43.77 3.28
106 107 3.137385 AACCTCAGCTGCCAGCCAA 62.137 57.895 14.25 0.15 43.77 4.52
107 108 3.573229 AACCTCAGCTGCCAGCCA 61.573 61.111 14.25 0.00 43.77 4.75
108 109 3.060615 CAACCTCAGCTGCCAGCC 61.061 66.667 14.25 0.00 43.77 4.85
109 110 3.745803 GCAACCTCAGCTGCCAGC 61.746 66.667 9.13 9.13 42.84 4.85
110 111 2.033757 AGCAACCTCAGCTGCCAG 59.966 61.111 9.47 1.54 41.61 4.85
115 116 2.033757 CTGGCAGCAACCTCAGCT 59.966 61.111 0.00 0.00 44.62 4.24
116 117 3.745803 GCTGGCAGCAACCTCAGC 61.746 66.667 33.33 4.00 44.34 4.26
117 118 3.060615 GGCTGGCAGCAACCTCAG 61.061 66.667 37.49 0.50 44.75 3.35
118 119 4.666253 GGGCTGGCAGCAACCTCA 62.666 66.667 37.49 0.00 44.75 3.86
119 120 4.666253 TGGGCTGGCAGCAACCTC 62.666 66.667 37.49 21.25 44.75 3.85
120 121 4.982701 GTGGGCTGGCAGCAACCT 62.983 66.667 37.49 0.00 44.75 3.50
129 130 3.190738 TTGAACTCGGGTGGGCTGG 62.191 63.158 0.00 0.00 0.00 4.85
130 131 1.672356 CTTGAACTCGGGTGGGCTG 60.672 63.158 0.00 0.00 0.00 4.85
131 132 2.113243 GACTTGAACTCGGGTGGGCT 62.113 60.000 0.00 0.00 0.00 5.19
132 133 1.671379 GACTTGAACTCGGGTGGGC 60.671 63.158 0.00 0.00 0.00 5.36
133 134 1.003718 GGACTTGAACTCGGGTGGG 60.004 63.158 0.00 0.00 0.00 4.61
134 135 1.003718 GGGACTTGAACTCGGGTGG 60.004 63.158 0.00 0.00 0.00 4.61
135 136 1.374252 CGGGACTTGAACTCGGGTG 60.374 63.158 0.00 0.00 0.00 4.61
136 137 2.580601 CCGGGACTTGAACTCGGGT 61.581 63.158 0.00 0.00 46.21 5.28
137 138 2.264794 CCGGGACTTGAACTCGGG 59.735 66.667 0.00 0.00 46.21 5.14
139 140 1.004918 AAGCCGGGACTTGAACTCG 60.005 57.895 2.18 0.00 0.00 4.18
149 150 4.308458 CACACGTCCAAGCCGGGA 62.308 66.667 2.18 0.00 34.36 5.14
151 152 4.619227 ACCACACGTCCAAGCCGG 62.619 66.667 0.00 0.00 0.00 6.13
152 153 3.345808 CACCACACGTCCAAGCCG 61.346 66.667 0.00 0.00 0.00 5.52
153 154 3.660111 GCACCACACGTCCAAGCC 61.660 66.667 0.00 0.00 0.00 4.35
154 155 2.591715 AGCACCACACGTCCAAGC 60.592 61.111 0.00 0.00 0.00 4.01
155 156 2.310233 CGAGCACCACACGTCCAAG 61.310 63.158 0.00 0.00 0.00 3.61
156 157 2.279851 CGAGCACCACACGTCCAA 60.280 61.111 0.00 0.00 0.00 3.53
157 158 4.961511 GCGAGCACCACACGTCCA 62.962 66.667 0.00 0.00 34.56 4.02
158 159 4.961511 TGCGAGCACCACACGTCC 62.962 66.667 0.00 0.00 34.56 4.79
159 160 3.406361 CTGCGAGCACCACACGTC 61.406 66.667 0.00 0.00 34.56 4.34
160 161 3.848347 CTCTGCGAGCACCACACGT 62.848 63.158 0.00 0.00 34.56 4.49
161 162 3.108289 CTCTGCGAGCACCACACG 61.108 66.667 0.00 0.00 35.25 4.49
162 163 1.160329 AAACTCTGCGAGCACCACAC 61.160 55.000 5.63 0.00 32.04 3.82
163 164 0.463654 AAAACTCTGCGAGCACCACA 60.464 50.000 5.63 0.00 32.04 4.17
164 165 0.663153 AAAAACTCTGCGAGCACCAC 59.337 50.000 5.63 0.00 32.04 4.16
165 166 0.944386 GAAAAACTCTGCGAGCACCA 59.056 50.000 5.63 0.00 32.04 4.17
166 167 0.238553 GGAAAAACTCTGCGAGCACC 59.761 55.000 5.63 0.00 32.04 5.01
167 168 1.230324 AGGAAAAACTCTGCGAGCAC 58.770 50.000 5.63 0.00 32.04 4.40
168 169 2.831685 TAGGAAAAACTCTGCGAGCA 57.168 45.000 0.00 0.00 32.04 4.26
169 170 5.796350 TTTATAGGAAAAACTCTGCGAGC 57.204 39.130 5.63 0.00 32.04 5.03
191 192 3.934457 CTAACCCTCGTTGGCATTTTT 57.066 42.857 0.00 0.00 33.17 1.94
206 207 1.351350 AGACCAACTCAAGGGCTAACC 59.649 52.381 0.00 0.00 44.68 2.85
207 208 2.861147 AGACCAACTCAAGGGCTAAC 57.139 50.000 0.00 0.00 44.68 2.34
260 261 0.872021 GGCTCGATGCGTAACTGAGG 60.872 60.000 0.00 0.00 44.05 3.86
265 266 1.599916 GGACTAGGCTCGATGCGTAAC 60.600 57.143 0.00 7.34 44.05 2.50
270 271 0.747255 TTGAGGACTAGGCTCGATGC 59.253 55.000 0.00 0.00 41.94 3.91
273 274 2.437085 TCATTGAGGACTAGGCTCGA 57.563 50.000 0.00 0.00 0.00 4.04
278 279 5.053145 GTGCACTTATCATTGAGGACTAGG 58.947 45.833 10.32 0.00 0.00 3.02
279 280 4.742167 CGTGCACTTATCATTGAGGACTAG 59.258 45.833 16.19 0.00 0.00 2.57
296 297 3.311596 AGGTTTTTCTTGTACTCGTGCAC 59.688 43.478 6.82 6.82 0.00 4.57
301 302 5.238583 AGGATCAGGTTTTTCTTGTACTCG 58.761 41.667 0.00 0.00 0.00 4.18
328 329 9.628500 AAGGCGAATTTAGACTCCTATTTATTT 57.372 29.630 0.00 0.00 0.00 1.40
340 341 2.603560 CCTCACGAAGGCGAATTTAGAC 59.396 50.000 0.00 0.00 38.67 2.59
387 388 6.214615 TCAACTGGTTGAAGGAGTGGATATTA 59.785 38.462 12.94 0.00 45.56 0.98
388 389 5.014123 TCAACTGGTTGAAGGAGTGGATATT 59.986 40.000 12.94 0.00 45.56 1.28
390 391 3.907474 TCAACTGGTTGAAGGAGTGGATA 59.093 43.478 12.94 0.00 45.56 2.59
401 402 1.352083 AGCCTAGCTCAACTGGTTGA 58.648 50.000 14.30 14.30 46.27 3.18
471 472 2.016318 TCGATGGAATGTTGATGTGCC 58.984 47.619 0.00 0.00 0.00 5.01
695 696 6.207417 CCAATTGTCCAAAGAAAAGCTAGAGA 59.793 38.462 4.43 0.00 0.00 3.10
707 708 7.814587 GGAAAGAAATAGTCCAATTGTCCAAAG 59.185 37.037 4.43 0.00 0.00 2.77
713 714 6.001460 TCGTGGAAAGAAATAGTCCAATTGT 58.999 36.000 4.43 0.00 42.97 2.71
714 715 6.149474 AGTCGTGGAAAGAAATAGTCCAATTG 59.851 38.462 0.00 0.00 42.97 2.32
715 716 6.238648 AGTCGTGGAAAGAAATAGTCCAATT 58.761 36.000 0.00 0.00 42.97 2.32
716 717 5.805728 AGTCGTGGAAAGAAATAGTCCAAT 58.194 37.500 0.00 0.00 42.97 3.16
717 718 5.223449 AGTCGTGGAAAGAAATAGTCCAA 57.777 39.130 0.00 0.00 42.97 3.53
718 719 4.322499 GGAGTCGTGGAAAGAAATAGTCCA 60.322 45.833 0.00 0.00 39.14 4.02
721 722 3.508793 TCGGAGTCGTGGAAAGAAATAGT 59.491 43.478 0.00 0.00 37.69 2.12
747 748 7.518848 GCAAAGCAAAGTGATGATATCGATGTA 60.519 37.037 8.54 0.00 0.00 2.29
789 790 4.381718 GGATAACTTAACACCTCAGACGCT 60.382 45.833 0.00 0.00 0.00 5.07
809 810 2.957402 TGGCAGTTGAACAAGAGGAT 57.043 45.000 0.00 0.00 0.00 3.24
817 818 3.426159 CCGTAACATCATGGCAGTTGAAC 60.426 47.826 0.00 0.00 0.00 3.18
958 1145 5.109903 ACAAAGTAGCTATCGTGGATCAAC 58.890 41.667 0.00 0.00 0.00 3.18
1052 1239 5.300286 CCATTGAAACAAGTCTTGAGGAAGT 59.700 40.000 19.53 0.00 0.00 3.01
1221 1428 3.344852 CATGCATCGAAATGTGTACGTG 58.655 45.455 0.00 0.00 35.18 4.49
1223 1430 2.222999 TGCATGCATCGAAATGTGTACG 60.223 45.455 18.46 0.00 35.18 3.67
1284 1494 1.265095 CTGCATGGATGAACGTATGCC 59.735 52.381 14.37 3.48 43.89 4.40
1327 1541 1.517832 GCCCTGAGACAGTGCGTAT 59.482 57.895 0.00 0.00 0.00 3.06
1511 1725 0.745128 ACGAGGTAGAGCTCGAGGTG 60.745 60.000 31.23 8.12 44.85 4.00
1621 1835 3.044305 AGCACGAACGCCTGCTTC 61.044 61.111 6.52 0.00 41.04 3.86
1669 1883 1.165907 CGTTGAGGCTGCTGAACCAA 61.166 55.000 0.00 0.00 0.00 3.67
1727 1941 2.233654 CGGCGGCGATGAGAAGAAG 61.234 63.158 29.19 0.00 0.00 2.85
1748 1962 2.511900 GAACACCCCGACCCACAA 59.488 61.111 0.00 0.00 0.00 3.33
1950 2164 9.213799 GGTAAGCAATCCAAACAATTCAAATAA 57.786 29.630 0.00 0.00 0.00 1.40
1951 2165 8.370940 TGGTAAGCAATCCAAACAATTCAAATA 58.629 29.630 0.00 0.00 0.00 1.40
1952 2166 7.173047 GTGGTAAGCAATCCAAACAATTCAAAT 59.827 33.333 0.00 0.00 35.38 2.32
1953 2167 6.481644 GTGGTAAGCAATCCAAACAATTCAAA 59.518 34.615 0.00 0.00 35.38 2.69
1954 2168 5.988561 GTGGTAAGCAATCCAAACAATTCAA 59.011 36.000 0.00 0.00 35.38 2.69
1955 2169 5.069648 TGTGGTAAGCAATCCAAACAATTCA 59.930 36.000 0.00 0.00 35.38 2.57
1956 2170 5.537188 TGTGGTAAGCAATCCAAACAATTC 58.463 37.500 0.00 0.00 35.38 2.17
1957 2171 5.543507 TGTGGTAAGCAATCCAAACAATT 57.456 34.783 0.00 0.00 35.38 2.32
1958 2172 5.011943 ACATGTGGTAAGCAATCCAAACAAT 59.988 36.000 0.00 0.00 35.38 2.71
1959 2173 4.343526 ACATGTGGTAAGCAATCCAAACAA 59.656 37.500 0.00 0.00 35.38 2.83
1960 2174 3.894427 ACATGTGGTAAGCAATCCAAACA 59.106 39.130 0.00 0.00 35.38 2.83
1961 2175 4.236935 CACATGTGGTAAGCAATCCAAAC 58.763 43.478 18.51 0.00 35.38 2.93
1962 2176 3.894427 ACACATGTGGTAAGCAATCCAAA 59.106 39.130 28.64 0.00 35.38 3.28
1963 2177 3.495331 ACACATGTGGTAAGCAATCCAA 58.505 40.909 28.64 0.00 35.38 3.53
1964 2178 3.081061 GACACATGTGGTAAGCAATCCA 58.919 45.455 28.64 0.00 34.19 3.41
1965 2179 3.081061 TGACACATGTGGTAAGCAATCC 58.919 45.455 28.64 6.08 34.19 3.01
1966 2180 4.156556 ACATGACACATGTGGTAAGCAATC 59.843 41.667 28.64 14.99 34.19 2.67
1967 2181 4.081406 ACATGACACATGTGGTAAGCAAT 58.919 39.130 28.64 5.90 34.19 3.56
1968 2182 3.252944 CACATGACACATGTGGTAAGCAA 59.747 43.478 28.64 7.21 44.04 3.91
1969 2183 2.813172 CACATGACACATGTGGTAAGCA 59.187 45.455 28.64 17.63 44.04 3.91
1970 2184 3.476295 CACATGACACATGTGGTAAGC 57.524 47.619 28.64 13.03 44.04 3.09
1976 2190 2.805671 ACGTAACCACATGACACATGTG 59.194 45.455 27.39 27.39 46.49 3.21
1977 2191 3.120321 ACGTAACCACATGACACATGT 57.880 42.857 10.94 10.94 0.00 3.21
1978 2192 3.496507 TCAACGTAACCACATGACACATG 59.503 43.478 0.00 9.72 0.00 3.21
1979 2193 3.734463 TCAACGTAACCACATGACACAT 58.266 40.909 0.00 0.00 0.00 3.21
1980 2194 3.180891 TCAACGTAACCACATGACACA 57.819 42.857 0.00 0.00 0.00 3.72
1981 2195 4.742438 ATTCAACGTAACCACATGACAC 57.258 40.909 0.00 0.00 0.00 3.67
1982 2196 5.060506 AGAATTCAACGTAACCACATGACA 58.939 37.500 8.44 0.00 0.00 3.58
1983 2197 5.607119 AGAATTCAACGTAACCACATGAC 57.393 39.130 8.44 0.00 0.00 3.06
1984 2198 5.760743 TCAAGAATTCAACGTAACCACATGA 59.239 36.000 8.44 0.00 0.00 3.07
1985 2199 5.996219 TCAAGAATTCAACGTAACCACATG 58.004 37.500 8.44 0.00 0.00 3.21
1986 2200 6.627395 TTCAAGAATTCAACGTAACCACAT 57.373 33.333 8.44 0.00 0.00 3.21
1987 2201 6.438259 TTTCAAGAATTCAACGTAACCACA 57.562 33.333 8.44 0.00 0.00 4.17
1988 2202 7.136119 TGATTTCAAGAATTCAACGTAACCAC 58.864 34.615 8.44 0.00 30.54 4.16
1989 2203 7.265647 TGATTTCAAGAATTCAACGTAACCA 57.734 32.000 8.44 0.00 30.54 3.67
1990 2204 7.201350 GCATGATTTCAAGAATTCAACGTAACC 60.201 37.037 8.44 0.00 35.27 2.85
2027 2245 7.309177 CGAATCACATATAGGAGTAGGAAGTG 58.691 42.308 0.00 0.00 0.00 3.16
2029 2247 6.071896 TGCGAATCACATATAGGAGTAGGAAG 60.072 42.308 0.00 0.00 0.00 3.46
2032 2250 5.644977 TGCGAATCACATATAGGAGTAGG 57.355 43.478 0.00 0.00 0.00 3.18
2039 2257 8.894409 TTGTTCTTTTTGCGAATCACATATAG 57.106 30.769 0.00 0.00 0.00 1.31
2043 2262 5.830912 TCTTGTTCTTTTTGCGAATCACAT 58.169 33.333 0.00 0.00 0.00 3.21
2084 2303 9.859427 CGGCCATTGATAATTTCACATATATTT 57.141 29.630 2.24 0.00 32.84 1.40
2097 2316 5.278266 CGTAAAATGTCCGGCCATTGATAAT 60.278 40.000 12.17 0.00 35.30 1.28
2104 2323 1.828979 AACGTAAAATGTCCGGCCAT 58.171 45.000 2.24 0.00 0.00 4.40
2107 2326 2.973419 TCAAACGTAAAATGTCCGGC 57.027 45.000 0.00 0.00 0.00 6.13
2121 2340 2.869702 GCGCGGCGTGAATCAAAC 60.870 61.111 26.40 0.00 0.00 2.93
2183 2402 1.744320 TACCCGACGATGCCCATCAG 61.744 60.000 8.79 4.39 37.69 2.90
2470 2689 3.459965 CAGCTGAGGAGAGCGCCT 61.460 66.667 8.42 0.00 44.24 5.52
2485 2704 2.202797 AGCATAGTCGCCGTGCAG 60.203 61.111 0.26 0.00 41.19 4.41
2497 2716 4.100084 AGGCACGGCAGCAGCATA 62.100 61.111 2.65 0.00 44.61 3.14
2553 2772 1.384643 GTCTCCAGCCCCATACCCT 60.385 63.158 0.00 0.00 0.00 4.34
2644 2863 8.508062 TGTGTTAATCATAACTTGCGTACAATT 58.492 29.630 0.00 0.00 41.65 2.32
2702 2922 3.725490 ACTCCAGTCCGTAAGTTTTCAC 58.275 45.455 0.00 0.00 0.00 3.18
2718 2938 8.314751 CAGAGGAGAATTAGTAGAAAAACTCCA 58.685 37.037 0.00 0.00 43.23 3.86
2719 2939 8.532819 TCAGAGGAGAATTAGTAGAAAAACTCC 58.467 37.037 0.00 0.00 41.74 3.85
2727 2947 9.427821 AGCTAAATTCAGAGGAGAATTAGTAGA 57.572 33.333 10.20 0.00 44.96 2.59
2731 2951 7.228308 CCCAAGCTAAATTCAGAGGAGAATTAG 59.772 40.741 2.72 3.27 44.96 1.73
2732 2952 7.056635 CCCAAGCTAAATTCAGAGGAGAATTA 58.943 38.462 2.72 0.00 44.96 1.40
2734 2954 5.444176 CCCAAGCTAAATTCAGAGGAGAAT 58.556 41.667 0.00 0.00 39.81 2.40
2756 2978 1.625818 TGACTGAAAGAGGAGAAGGCC 59.374 52.381 0.00 0.00 37.43 5.19
2775 2997 4.554134 CGCAGGATAAGATTGCAACATCTG 60.554 45.833 0.00 4.51 37.69 2.90
2776 2998 3.562973 CGCAGGATAAGATTGCAACATCT 59.437 43.478 0.00 0.00 37.69 2.90
2786 3008 4.757149 GGCATTAAACTCGCAGGATAAGAT 59.243 41.667 0.00 0.00 0.00 2.40
2787 3009 4.127171 GGCATTAAACTCGCAGGATAAGA 58.873 43.478 0.00 0.00 0.00 2.10
2790 3012 3.552132 TGGCATTAAACTCGCAGGATA 57.448 42.857 0.00 0.00 0.00 2.59
2817 3039 9.784531 TGATTTTATGGCATTAACCTTTCAAAA 57.215 25.926 4.78 3.37 0.00 2.44
2818 3040 9.434420 CTGATTTTATGGCATTAACCTTTCAAA 57.566 29.630 4.78 0.00 0.00 2.69
2819 3041 8.592809 ACTGATTTTATGGCATTAACCTTTCAA 58.407 29.630 4.78 0.00 0.00 2.69
2820 3042 8.133024 ACTGATTTTATGGCATTAACCTTTCA 57.867 30.769 4.78 3.21 0.00 2.69
2821 3043 7.706607 GGACTGATTTTATGGCATTAACCTTTC 59.293 37.037 4.78 0.00 0.00 2.62
2822 3044 7.400052 AGGACTGATTTTATGGCATTAACCTTT 59.600 33.333 4.78 0.00 0.00 3.11
2823 3045 6.897413 AGGACTGATTTTATGGCATTAACCTT 59.103 34.615 4.78 0.00 0.00 3.50
2824 3046 6.435164 AGGACTGATTTTATGGCATTAACCT 58.565 36.000 4.78 1.57 0.00 3.50
2825 3047 6.715347 AGGACTGATTTTATGGCATTAACC 57.285 37.500 4.78 0.00 0.00 2.85
2826 3048 8.352942 CCTAAGGACTGATTTTATGGCATTAAC 58.647 37.037 4.78 0.00 0.00 2.01
2827 3049 8.058847 ACCTAAGGACTGATTTTATGGCATTAA 58.941 33.333 4.78 0.00 0.00 1.40
2828 3050 7.502226 CACCTAAGGACTGATTTTATGGCATTA 59.498 37.037 4.78 0.00 0.00 1.90
2829 3051 6.322201 CACCTAAGGACTGATTTTATGGCATT 59.678 38.462 4.78 0.00 0.00 3.56
2830 3052 5.829924 CACCTAAGGACTGATTTTATGGCAT 59.170 40.000 4.88 4.88 0.00 4.40
2831 3053 5.192927 CACCTAAGGACTGATTTTATGGCA 58.807 41.667 0.00 0.00 0.00 4.92
2832 3054 5.193679 ACACCTAAGGACTGATTTTATGGC 58.806 41.667 0.00 0.00 0.00 4.40
2833 3055 6.483640 GCTACACCTAAGGACTGATTTTATGG 59.516 42.308 0.00 0.00 0.00 2.74
2842 3064 4.819630 TGTTTTTGCTACACCTAAGGACTG 59.180 41.667 0.00 0.00 0.00 3.51
2848 3070 6.621316 TTCGATTGTTTTTGCTACACCTAA 57.379 33.333 0.00 0.00 0.00 2.69
2859 3081 5.479716 ACTCAGACGTTTCGATTGTTTTT 57.520 34.783 0.00 0.00 0.00 1.94
2878 3100 6.199937 AGTCCATGCATCAATTGTTAACTC 57.800 37.500 7.22 0.00 0.00 3.01
2919 3449 4.927267 AGTCCATCCACCAATTTACTCA 57.073 40.909 0.00 0.00 0.00 3.41
2953 3521 5.871396 TGCCTTGAGTCTACTTATTAGGG 57.129 43.478 0.00 0.00 0.00 3.53
2955 3523 6.459923 GGGATGCCTTGAGTCTACTTATTAG 58.540 44.000 0.00 0.00 0.00 1.73
2971 3539 5.911766 AGTCTACTTATTTTAGGGGATGCCT 59.088 40.000 2.19 0.00 0.00 4.75
2976 3544 5.903589 CCCTGAGTCTACTTATTTTAGGGGA 59.096 44.000 0.00 0.00 38.90 4.81
2986 3554 3.678806 CGCAAATGCCCTGAGTCTACTTA 60.679 47.826 0.00 0.00 37.91 2.24
2994 3562 1.386533 ATTCTCGCAAATGCCCTGAG 58.613 50.000 0.00 1.48 37.91 3.35
3041 3609 2.806945 TCCATCCCAGTGAACATTCC 57.193 50.000 0.00 0.00 0.00 3.01
3111 3679 1.142778 TTTGCCGCGTTTGCTTGAAC 61.143 50.000 4.92 0.00 39.65 3.18
3123 4986 1.216122 TTTGCTGTGAAATTTGCCGC 58.784 45.000 0.00 0.00 0.00 6.53
3153 5016 6.922957 TCAGAAACACATGGCAAATTCTTAAC 59.077 34.615 0.00 0.00 0.00 2.01
3160 5023 5.534207 TTCTTCAGAAACACATGGCAAAT 57.466 34.783 0.00 0.00 0.00 2.32
3248 5112 2.423577 GACCGCAATAACCAGTGAACT 58.576 47.619 0.00 0.00 0.00 3.01
3253 5120 3.926058 AATAGGACCGCAATAACCAGT 57.074 42.857 0.00 0.00 0.00 4.00
3441 5630 0.392998 ACCATGCTAACTTCGGCCTG 60.393 55.000 0.00 0.00 0.00 4.85
3524 5713 6.382282 TGGATAGAGCAATGAGAGAGAGAAAA 59.618 38.462 0.00 0.00 0.00 2.29
3589 5778 1.606601 CCCTCCGTCCACTCTGTCA 60.607 63.158 0.00 0.00 0.00 3.58
3601 5790 0.601558 TGAAAGTCGACTTCCCTCCG 59.398 55.000 29.82 0.00 34.61 4.63
3637 5826 6.088483 CGAAATCCACAACAATCAATGACTTG 59.912 38.462 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.