Multiple sequence alignment - TraesCS2D01G280700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G280700 chr2D 100.000 2951 0 0 1 2951 352906560 352903610 0.000000e+00 5450
1 TraesCS2D01G280700 chr2A 91.937 1848 69 25 191 1977 471006703 471004875 0.000000e+00 2514
2 TraesCS2D01G280700 chr2A 89.847 847 50 5 1998 2837 471004813 471003996 0.000000e+00 1055
3 TraesCS2D01G280700 chr2A 83.412 211 4 9 1 186 471007075 471006871 1.820000e-37 167
4 TraesCS2D01G280700 chr2B 89.300 2056 92 51 1 1982 419323647 419321646 0.000000e+00 2460
5 TraesCS2D01G280700 chr2B 91.975 947 53 8 1998 2929 419321584 419320646 0.000000e+00 1306
6 TraesCS2D01G280700 chr7A 86.029 136 17 2 1505 1639 680542156 680542290 8.520000e-31 145
7 TraesCS2D01G280700 chr7D 85.401 137 16 4 1505 1639 589054732 589054598 3.970000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G280700 chr2D 352903610 352906560 2950 True 5450.000000 5450 100.000000 1 2951 1 chr2D.!!$R1 2950
1 TraesCS2D01G280700 chr2A 471003996 471007075 3079 True 1245.333333 2514 88.398667 1 2837 3 chr2A.!!$R1 2836
2 TraesCS2D01G280700 chr2B 419320646 419323647 3001 True 1883.000000 2460 90.637500 1 2929 2 chr2B.!!$R1 2928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 185 0.105039 CTTAGCGGCGAAGGATTCCT 59.895 55.0 12.98 0.0 43.81 3.36 F
1117 1391 0.107993 AGATGCTGTCCACCATCGTG 60.108 55.0 0.00 0.0 41.98 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1292 1566 0.038526 TTCTTGCCTCCGTCGTCTTC 60.039 55.0 0.00 0.00 0.0 2.87 R
2638 2987 0.036388 AAGTGTCCGCGGTTGATCAT 60.036 50.0 27.15 3.84 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 164 0.117943 TGGCCATTTGGGATGGGAAA 59.882 50.000 0.00 0.00 40.01 3.13
152 182 0.252197 AACCTTAGCGGCGAAGGATT 59.748 50.000 37.62 26.53 45.52 3.01
153 183 0.179081 ACCTTAGCGGCGAAGGATTC 60.179 55.000 37.62 2.45 45.52 2.52
154 184 0.880718 CCTTAGCGGCGAAGGATTCC 60.881 60.000 30.76 0.00 45.52 3.01
155 185 0.105039 CTTAGCGGCGAAGGATTCCT 59.895 55.000 12.98 0.00 43.81 3.36
196 389 1.823828 CAGCATCGACCAGTACGTAC 58.176 55.000 18.10 18.10 0.00 3.67
245 438 1.203994 ACTCGTGGTTCCCAGAATACG 59.796 52.381 9.42 9.42 32.34 3.06
312 506 6.206634 CCAGCTGAGATTTACCAAACACTTTA 59.793 38.462 17.39 0.00 0.00 1.85
385 604 4.749245 TTTTGCGAGGAAATCTCTTGAC 57.251 40.909 0.00 0.00 40.30 3.18
410 630 1.883275 TCACAATTTACAACAGCCCCG 59.117 47.619 0.00 0.00 0.00 5.73
470 695 3.313526 GCCTACAATAATGTGAGTGCCTG 59.686 47.826 0.00 0.00 40.84 4.85
471 696 4.769688 CCTACAATAATGTGAGTGCCTGA 58.230 43.478 0.00 0.00 40.84 3.86
472 697 4.572389 CCTACAATAATGTGAGTGCCTGAC 59.428 45.833 0.00 0.00 40.84 3.51
473 698 4.292186 ACAATAATGTGAGTGCCTGACT 57.708 40.909 0.00 0.00 38.69 3.41
486 711 1.354337 CCTGACTCACAATGACCGCG 61.354 60.000 0.00 0.00 0.00 6.46
492 717 0.533032 TCACAATGACCGCGATACCA 59.467 50.000 8.23 0.00 0.00 3.25
567 798 4.023193 CACCTCACCATGAACTTTGTTACC 60.023 45.833 0.00 0.00 0.00 2.85
637 868 3.219281 TCTTTGAAAGGAAAGAACCCGG 58.781 45.455 4.94 0.00 38.69 5.73
712 947 3.232720 TGCATGCATACCCATCATCTT 57.767 42.857 18.46 0.00 0.00 2.40
771 1009 5.172411 GCCTTTGTTAATTGTTACACACACG 59.828 40.000 0.00 0.00 33.98 4.49
772 1010 5.172411 CCTTTGTTAATTGTTACACACACGC 59.828 40.000 0.00 0.00 33.98 5.34
775 1013 2.766970 AATTGTTACACACACGCACC 57.233 45.000 0.00 0.00 33.98 5.01
782 1020 2.186160 CACACACGCACCCACACAT 61.186 57.895 0.00 0.00 0.00 3.21
796 1034 2.246469 CACACATCCATTGTTTCCCCA 58.754 47.619 0.00 0.00 36.00 4.96
800 1038 1.139455 CATCCATTGTTTCCCCATGGC 59.861 52.381 6.09 0.00 32.68 4.40
886 1124 2.682494 GCTCACCCCCACCGTCTA 60.682 66.667 0.00 0.00 0.00 2.59
887 1125 2.288025 GCTCACCCCCACCGTCTAA 61.288 63.158 0.00 0.00 0.00 2.10
971 1221 1.726791 CACCTTGCGCTACTGTACAAG 59.273 52.381 9.73 0.27 39.35 3.16
972 1222 1.343465 ACCTTGCGCTACTGTACAAGT 59.657 47.619 9.73 0.07 43.40 3.16
973 1223 2.559668 ACCTTGCGCTACTGTACAAGTA 59.440 45.455 9.73 1.31 40.56 2.24
974 1224 2.921754 CCTTGCGCTACTGTACAAGTAC 59.078 50.000 9.73 3.47 40.56 2.73
975 1225 3.571571 CTTGCGCTACTGTACAAGTACA 58.428 45.455 9.73 12.09 43.14 2.90
976 1226 3.646611 TGCGCTACTGTACAAGTACAA 57.353 42.857 9.73 0.39 44.47 2.41
980 1230 4.300803 CGCTACTGTACAAGTACAACCAA 58.699 43.478 13.45 0.58 44.47 3.67
1048 1322 7.750903 CACCTTTATTTTGCAAGCTAGTTAGAC 59.249 37.037 0.00 0.00 0.00 2.59
1084 1358 2.393271 AGATGAAGACCAAGGCTTCG 57.607 50.000 0.00 0.00 43.57 3.79
1117 1391 0.107993 AGATGCTGTCCACCATCGTG 60.108 55.000 0.00 0.00 41.98 4.35
1291 1565 3.013932 AAGGAGGAGGCAGCCCAG 61.014 66.667 8.22 0.00 0.00 4.45
1303 1577 3.379445 GCCCAGGAAGACGACGGA 61.379 66.667 0.00 0.00 0.00 4.69
1406 1689 1.347907 GAGAGCGACGACGAGTACC 59.652 63.158 12.29 0.00 42.66 3.34
1509 1792 2.124942 CGCCAAGGAGAAGGAGGC 60.125 66.667 0.00 0.00 41.86 4.70
1658 1941 1.153086 AGCGCTTGATCCACATCCC 60.153 57.895 2.64 0.00 0.00 3.85
1660 1943 0.106708 GCGCTTGATCCACATCCCTA 59.893 55.000 0.00 0.00 0.00 3.53
1672 1955 3.056250 CCACATCCCTAGAATCAGATCCG 60.056 52.174 0.00 0.00 0.00 4.18
1792 2076 9.330063 CATGCATGTAAGTAGAAGGAAAAGATA 57.670 33.333 18.91 0.00 0.00 1.98
1843 2127 0.034477 AGGGTTTTAGTGGGGATGCG 60.034 55.000 0.00 0.00 0.00 4.73
1881 2171 7.166473 CGTGGTACTTTAATCATTACGTACTCC 59.834 40.741 12.56 6.17 0.00 3.85
1898 2188 6.183360 ACGTACTCCTGTTCTTTTGTTCTTTG 60.183 38.462 0.00 0.00 0.00 2.77
1986 2276 7.520451 AATAGACGGCATATACTGTACTTCA 57.480 36.000 0.00 0.00 0.00 3.02
1987 2277 5.184340 AGACGGCATATACTGTACTTCAC 57.816 43.478 0.00 0.00 0.00 3.18
1988 2278 3.961182 ACGGCATATACTGTACTTCACG 58.039 45.455 0.00 0.00 0.00 4.35
1989 2279 3.379372 ACGGCATATACTGTACTTCACGT 59.621 43.478 0.00 0.00 0.00 4.49
1991 2281 4.496840 CGGCATATACTGTACTTCACGTCA 60.497 45.833 0.00 0.00 0.00 4.35
1993 2283 5.450137 GGCATATACTGTACTTCACGTCAGT 60.450 44.000 9.84 9.84 42.56 3.41
1995 2285 6.632035 GCATATACTGTACTTCACGTCAGTAC 59.368 42.308 20.71 20.71 44.78 2.73
2028 2364 9.683069 CAACTGAACAAATTAGCTTCAACTAAT 57.317 29.630 0.00 0.00 43.17 1.73
2117 2456 2.641305 AGCAGAATCAAGCTGATGACC 58.359 47.619 0.00 0.00 40.13 4.02
2118 2457 1.329906 GCAGAATCAAGCTGATGACCG 59.670 52.381 0.00 0.00 37.15 4.79
2132 2471 0.943835 TGACCGCACATGACAACGAG 60.944 55.000 0.00 0.00 0.00 4.18
2190 2529 2.435372 TTGGCCAAGAACAGAACAGT 57.565 45.000 16.05 0.00 0.00 3.55
2194 2533 4.469657 TGGCCAAGAACAGAACAGTTAAT 58.530 39.130 0.61 0.00 0.00 1.40
2328 2677 1.144936 CGTCCTCCATTGCCTCCTC 59.855 63.158 0.00 0.00 0.00 3.71
2420 2769 0.179045 CTGTTCCCTATTGGCCTCCG 60.179 60.000 3.32 0.00 0.00 4.63
2545 2894 0.391661 AGGTGCATGTGGATGACGAC 60.392 55.000 0.00 0.00 0.00 4.34
2552 2901 0.608308 TGTGGATGACGACGAGGACT 60.608 55.000 0.00 0.00 0.00 3.85
2555 2904 0.809385 GGATGACGACGAGGACTTCA 59.191 55.000 0.00 0.00 0.00 3.02
2568 2917 0.815734 GACTTCAAGGACCCGATCGA 59.184 55.000 18.66 0.00 0.00 3.59
2628 2977 4.233287 AGAAGGAACCCTAGGAGAGTGTAT 59.767 45.833 11.48 0.00 31.13 2.29
2638 2987 5.768662 CCTAGGAGAGTGTATATCCGTTTCA 59.231 44.000 1.05 0.00 44.59 2.69
2681 3030 1.895238 CTTGCCCCTGCTTTGATGG 59.105 57.895 0.00 0.00 38.71 3.51
2778 3127 3.547746 TGGACACAGTTAAAACCCTGAC 58.452 45.455 0.00 0.00 32.93 3.51
2790 3139 0.840722 ACCCTGACATCTTTCCCCGT 60.841 55.000 0.00 0.00 0.00 5.28
2806 3158 3.123620 GTGGAAGCAGCCTCAGCG 61.124 66.667 0.00 0.00 46.67 5.18
2837 3189 1.209019 GAGCATCCTTTCTCTCAGCCA 59.791 52.381 0.00 0.00 0.00 4.75
2838 3190 1.845143 AGCATCCTTTCTCTCAGCCAT 59.155 47.619 0.00 0.00 0.00 4.40
2845 3197 2.108566 CTCTCAGCCATGGGAGCG 59.891 66.667 15.13 3.69 46.83 5.03
2873 3225 4.404098 GGTTCGCCCCATCACCGT 62.404 66.667 0.00 0.00 0.00 4.83
2906 3264 1.220749 GCAACTCGTCCCATAGCCA 59.779 57.895 0.00 0.00 0.00 4.75
2913 3271 1.115467 CGTCCCATAGCCACTTCTCT 58.885 55.000 0.00 0.00 0.00 3.10
2937 3295 2.913887 CGAGCGACGAAGAGTGTAC 58.086 57.895 0.00 0.00 45.77 2.90
2938 3296 0.165295 CGAGCGACGAAGAGTGTACA 59.835 55.000 0.00 0.00 45.77 2.90
2939 3297 1.787281 CGAGCGACGAAGAGTGTACAG 60.787 57.143 0.00 0.00 45.77 2.74
2940 3298 1.463831 GAGCGACGAAGAGTGTACAGA 59.536 52.381 0.00 0.00 0.00 3.41
2941 3299 2.085320 AGCGACGAAGAGTGTACAGAT 58.915 47.619 0.00 0.00 0.00 2.90
2942 3300 2.096174 AGCGACGAAGAGTGTACAGATC 59.904 50.000 0.00 0.00 0.00 2.75
2943 3301 2.096174 GCGACGAAGAGTGTACAGATCT 59.904 50.000 0.00 0.00 0.00 2.75
2944 3302 3.309138 GCGACGAAGAGTGTACAGATCTA 59.691 47.826 10.21 0.00 0.00 1.98
2945 3303 4.201792 GCGACGAAGAGTGTACAGATCTAA 60.202 45.833 10.21 0.00 0.00 2.10
2946 3304 5.257108 CGACGAAGAGTGTACAGATCTAAC 58.743 45.833 10.21 0.00 0.00 2.34
2947 3305 5.163884 CGACGAAGAGTGTACAGATCTAACA 60.164 44.000 10.21 0.00 0.00 2.41
2948 3306 6.457122 CGACGAAGAGTGTACAGATCTAACAT 60.457 42.308 11.95 3.76 0.00 2.71
2949 3307 7.159322 ACGAAGAGTGTACAGATCTAACATT 57.841 36.000 11.95 8.68 0.00 2.71
2950 3308 7.251994 ACGAAGAGTGTACAGATCTAACATTC 58.748 38.462 18.05 18.05 31.97 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 164 0.179081 GAATCCTTCGCCGCTAAGGT 60.179 55.000 20.07 5.24 43.42 3.50
152 182 0.895100 GTGCTTGCATGTGGGAAGGA 60.895 55.000 0.00 0.00 44.41 3.36
153 183 1.588082 GTGCTTGCATGTGGGAAGG 59.412 57.895 0.00 0.00 44.41 3.46
154 184 1.210931 CGTGCTTGCATGTGGGAAG 59.789 57.895 6.65 0.00 46.73 3.46
155 185 2.918345 GCGTGCTTGCATGTGGGAA 61.918 57.895 15.09 0.00 34.15 3.97
196 389 7.367285 ACTATAGATTAAGCAGCTCTTCTTCG 58.633 38.462 6.78 0.00 36.25 3.79
245 438 0.962855 GAGGGGGAGCTCAAAAGTGC 60.963 60.000 17.19 0.00 0.00 4.40
385 604 2.916716 GCTGTTGTAAATTGTGATGCCG 59.083 45.455 0.00 0.00 0.00 5.69
470 695 1.852895 GTATCGCGGTCATTGTGAGTC 59.147 52.381 6.13 0.00 0.00 3.36
471 696 1.470979 GGTATCGCGGTCATTGTGAGT 60.471 52.381 6.13 0.00 0.00 3.41
472 697 1.209128 GGTATCGCGGTCATTGTGAG 58.791 55.000 6.13 0.00 0.00 3.51
473 698 0.533032 TGGTATCGCGGTCATTGTGA 59.467 50.000 6.13 0.00 0.00 3.58
486 711 4.525100 TGGCCTTTTAACTTTGGTGGTATC 59.475 41.667 3.32 0.00 0.00 2.24
492 717 4.224147 AGTTTGTGGCCTTTTAACTTTGGT 59.776 37.500 3.32 0.00 0.00 3.67
712 947 6.110033 GGGCAAAAGGAAAAGTAGTCAAAAA 58.890 36.000 0.00 0.00 0.00 1.94
771 1009 0.968405 AACAATGGATGTGTGGGTGC 59.032 50.000 0.00 0.00 42.99 5.01
772 1010 2.029110 GGAAACAATGGATGTGTGGGTG 60.029 50.000 0.00 0.00 42.99 4.61
775 1013 1.550072 GGGGAAACAATGGATGTGTGG 59.450 52.381 0.00 0.00 42.99 4.17
782 1020 0.969917 CGCCATGGGGAAACAATGGA 60.970 55.000 23.98 0.00 44.71 3.41
796 1034 1.453928 GCTAAGGAAAGGGCGCCAT 60.454 57.895 30.85 21.35 0.00 4.40
800 1038 0.744771 GGTGAGCTAAGGAAAGGGCG 60.745 60.000 0.00 0.00 0.00 6.13
886 1124 7.690454 TGCCATGGGTATATATAGCAGTATT 57.310 36.000 20.52 1.32 32.63 1.89
887 1125 7.038017 GGATGCCATGGGTATATATAGCAGTAT 60.038 40.741 20.52 11.85 32.63 2.12
971 1221 2.603652 GCGTGGATTGTGTTGGTTGTAC 60.604 50.000 0.00 0.00 0.00 2.90
972 1222 1.604755 GCGTGGATTGTGTTGGTTGTA 59.395 47.619 0.00 0.00 0.00 2.41
973 1223 0.383949 GCGTGGATTGTGTTGGTTGT 59.616 50.000 0.00 0.00 0.00 3.32
974 1224 0.383590 TGCGTGGATTGTGTTGGTTG 59.616 50.000 0.00 0.00 0.00 3.77
975 1225 0.667993 CTGCGTGGATTGTGTTGGTT 59.332 50.000 0.00 0.00 0.00 3.67
976 1226 1.795170 GCTGCGTGGATTGTGTTGGT 61.795 55.000 0.00 0.00 0.00 3.67
980 1230 1.951510 CTTGCTGCGTGGATTGTGT 59.048 52.632 0.00 0.00 0.00 3.72
1193 1467 2.035442 GCTTCCTGTTGCGGAGGAC 61.035 63.158 0.00 0.00 39.44 3.85
1285 1559 3.382832 CCGTCGTCTTCCTGGGCT 61.383 66.667 0.00 0.00 0.00 5.19
1291 1565 1.446272 CTTGCCTCCGTCGTCTTCC 60.446 63.158 0.00 0.00 0.00 3.46
1292 1566 0.038526 TTCTTGCCTCCGTCGTCTTC 60.039 55.000 0.00 0.00 0.00 2.87
1509 1792 3.787001 GGAACTCAGCCCCCTCCG 61.787 72.222 0.00 0.00 0.00 4.63
1654 1937 2.183679 GGCGGATCTGATTCTAGGGAT 58.816 52.381 5.48 0.00 0.00 3.85
1658 1941 2.230992 CTGGAGGCGGATCTGATTCTAG 59.769 54.545 5.48 5.31 0.00 2.43
1660 1943 1.047002 CTGGAGGCGGATCTGATTCT 58.953 55.000 5.48 0.00 0.00 2.40
1672 1955 3.567478 ATAAATCACTGGACTGGAGGC 57.433 47.619 0.00 0.00 0.00 4.70
1759 2043 2.315925 ACTTACATGCATGGGTCTCG 57.684 50.000 29.41 13.77 0.00 4.04
1763 2047 3.780294 TCCTTCTACTTACATGCATGGGT 59.220 43.478 29.41 24.00 0.00 4.51
1792 2076 3.097342 AGCATCTTCTTGCCTGGATTT 57.903 42.857 0.00 0.00 43.83 2.17
1795 2079 3.457380 AGATAAGCATCTTCTTGCCTGGA 59.543 43.478 0.00 0.00 43.83 3.86
1843 2127 5.635417 AAAGTACCACGTAGTAGACCTTC 57.365 43.478 0.00 0.00 41.61 3.46
1881 2171 6.211515 CCCAGATCAAAGAACAAAAGAACAG 58.788 40.000 0.00 0.00 0.00 3.16
1898 2188 5.358160 CACTTTTACAATCTTCCCCCAGATC 59.642 44.000 0.00 0.00 31.87 2.75
1988 2278 1.004918 AGTTGCCTGCCGTACTGAC 60.005 57.895 0.00 0.00 0.00 3.51
1989 2279 1.005037 CAGTTGCCTGCCGTACTGA 60.005 57.895 9.28 0.00 40.24 3.41
1991 2281 0.602905 GTTCAGTTGCCTGCCGTACT 60.603 55.000 0.00 0.00 38.66 2.73
1993 2283 0.179043 TTGTTCAGTTGCCTGCCGTA 60.179 50.000 0.00 0.00 38.66 4.02
1995 2285 0.314935 ATTTGTTCAGTTGCCTGCCG 59.685 50.000 0.00 0.00 38.66 5.69
1996 2286 2.531522 AATTTGTTCAGTTGCCTGCC 57.468 45.000 0.00 0.00 38.66 4.85
2028 2364 7.562454 TCAACTCTCGGGGATTAGTAGAAAATA 59.438 37.037 0.00 0.00 0.00 1.40
2036 2372 3.442076 AGTTCAACTCTCGGGGATTAGT 58.558 45.455 0.00 0.00 0.00 2.24
2117 2456 1.136252 CCTTTCTCGTTGTCATGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
2118 2457 1.197721 CCCTTTCTCGTTGTCATGTGC 59.802 52.381 0.00 0.00 0.00 4.57
2132 2471 3.312697 CCATAAAACTAGCGAGCCCTTTC 59.687 47.826 0.00 0.00 0.00 2.62
2190 2529 6.268158 TCCTACGGATTACTGGTATGCATTAA 59.732 38.462 3.54 0.00 0.00 1.40
2194 2533 3.568443 TCCTACGGATTACTGGTATGCA 58.432 45.455 0.00 0.00 0.00 3.96
2328 2677 3.522731 CCCTGCGTCTCTCCGAGG 61.523 72.222 0.00 0.00 0.00 4.63
2420 2769 4.301027 CGCCAGGTATCTCGGGCC 62.301 72.222 0.00 0.00 43.50 5.80
2531 2880 0.455815 TCCTCGTCGTCATCCACATG 59.544 55.000 0.00 0.00 0.00 3.21
2533 2882 0.608308 AGTCCTCGTCGTCATCCACA 60.608 55.000 0.00 0.00 0.00 4.17
2545 2894 1.215647 CGGGTCCTTGAAGTCCTCG 59.784 63.158 0.00 0.00 0.00 4.63
2552 2901 2.027561 ACAATTCGATCGGGTCCTTGAA 60.028 45.455 16.41 0.00 0.00 2.69
2555 2904 1.134491 GGACAATTCGATCGGGTCCTT 60.134 52.381 26.87 10.53 43.62 3.36
2568 2917 1.073025 TCGGCACTGCAGGACAATT 59.927 52.632 19.93 0.00 0.00 2.32
2628 2977 2.869801 GCGGTTGATCATGAAACGGATA 59.130 45.455 17.37 0.00 34.02 2.59
2638 2987 0.036388 AAGTGTCCGCGGTTGATCAT 60.036 50.000 27.15 3.84 0.00 2.45
2681 3030 1.222115 GACAACACGGTCAGTCTGGC 61.222 60.000 0.00 0.00 37.73 4.85
2743 3092 3.066190 TCCATCCGTTCGCCGTCT 61.066 61.111 0.00 0.00 33.66 4.18
2760 3109 5.048846 AGATGTCAGGGTTTTAACTGTGT 57.951 39.130 0.00 0.00 36.17 3.72
2790 3139 3.313524 TCGCTGAGGCTGCTTCCA 61.314 61.111 9.40 0.00 36.09 3.53
2806 3158 3.188786 GATGCTCGTGTGGGCGTC 61.189 66.667 0.00 0.00 37.32 5.19
2845 3197 2.315386 GGCGAACCGTGGAGAACAC 61.315 63.158 0.00 0.00 46.78 3.32
2902 3260 1.548269 CTCGAAAGGAGAGAAGTGGCT 59.452 52.381 0.00 0.00 46.23 4.75
2906 3264 1.535833 TCGCTCGAAAGGAGAGAAGT 58.464 50.000 0.00 0.00 46.72 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.