Multiple sequence alignment - TraesCS2D01G280300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G280300 chr2D 100.000 3686 0 0 1 3686 352623657 352627342 0.000000e+00 6807.0
1 TraesCS2D01G280300 chr2D 97.143 70 2 0 337 406 200901964 200901895 6.470000e-23 119.0
2 TraesCS2D01G280300 chr2A 96.346 2764 61 14 669 3412 470430381 470433124 0.000000e+00 4508.0
3 TraesCS2D01G280300 chr2A 88.561 271 29 2 3418 3686 771681726 771681996 9.870000e-86 327.0
4 TraesCS2D01G280300 chr2A 92.377 223 14 2 1 221 470429963 470430184 7.680000e-82 315.0
5 TraesCS2D01G280300 chr2A 91.176 68 6 0 572 639 470430241 470430308 3.920000e-15 93.5
6 TraesCS2D01G280300 chr2B 96.694 2571 45 15 779 3327 418775972 418778524 0.000000e+00 4241.0
7 TraesCS2D01G280300 chr2B 94.606 241 12 1 1 240 418774508 418774748 4.500000e-99 372.0
8 TraesCS2D01G280300 chr2B 95.890 73 3 0 334 406 526475867 526475939 6.470000e-23 119.0
9 TraesCS2D01G280300 chr7B 91.852 270 20 2 3418 3686 727116592 727116324 3.480000e-100 375.0
10 TraesCS2D01G280300 chr3A 91.111 270 23 1 3417 3686 458689315 458689047 7.520000e-97 364.0
11 TraesCS2D01G280300 chr7A 90.741 270 25 0 3417 3686 727054642 727054911 9.730000e-96 361.0
12 TraesCS2D01G280300 chr7A 92.245 245 18 1 3415 3658 714823630 714823874 2.720000e-91 346.0
13 TraesCS2D01G280300 chr7A 92.697 178 12 1 396 572 352623989 352623812 4.720000e-64 255.0
14 TraesCS2D01G280300 chr5D 90.476 273 24 2 3415 3686 535499988 535499717 3.500000e-95 359.0
15 TraesCS2D01G280300 chr5D 90.706 269 23 2 3418 3686 509374805 509374539 1.260000e-94 357.0
16 TraesCS2D01G280300 chr5D 95.210 167 7 1 407 572 503224982 503224816 2.820000e-66 263.0
17 TraesCS2D01G280300 chr5D 95.210 167 7 1 407 572 503229767 503229601 2.820000e-66 263.0
18 TraesCS2D01G280300 chr5D 89.320 103 3 4 240 334 503248023 503248125 5.000000e-24 122.0
19 TraesCS2D01G280300 chr5D 89.320 103 3 4 240 334 503262025 503261923 5.000000e-24 122.0
20 TraesCS2D01G280300 chr5D 95.890 73 3 0 334 406 80074208 80074280 6.470000e-23 119.0
21 TraesCS2D01G280300 chr5D 95.890 73 3 0 334 406 80146645 80146573 6.470000e-23 119.0
22 TraesCS2D01G280300 chr3B 90.476 273 24 2 3415 3686 749645326 749645055 3.500000e-95 359.0
23 TraesCS2D01G280300 chr6A 89.051 274 24 3 3418 3686 356210494 356210766 5.900000e-88 335.0
24 TraesCS2D01G280300 chr6A 95.808 167 6 1 407 572 84403262 84403096 6.070000e-68 268.0
25 TraesCS2D01G280300 chr4B 95.808 167 6 1 407 572 209112807 209112973 6.070000e-68 268.0
26 TraesCS2D01G280300 chr3D 95.808 167 6 1 407 572 520163601 520163435 6.070000e-68 268.0
27 TraesCS2D01G280300 chr3D 88.785 107 3 5 237 334 508629095 508628989 5.000000e-24 122.0
28 TraesCS2D01G280300 chr3D 97.143 70 2 0 337 406 154774813 154774744 6.470000e-23 119.0
29 TraesCS2D01G280300 chrUn 95.210 167 7 1 407 572 352978435 352978269 2.820000e-66 263.0
30 TraesCS2D01G280300 chrUn 89.320 103 3 4 240 334 425407396 425407498 5.000000e-24 122.0
31 TraesCS2D01G280300 chrUn 89.320 103 3 4 240 334 428084140 428084038 5.000000e-24 122.0
32 TraesCS2D01G280300 chrUn 89.320 103 3 4 240 334 433990941 433991043 5.000000e-24 122.0
33 TraesCS2D01G280300 chrUn 89.320 103 3 4 240 334 461210892 461210790 5.000000e-24 122.0
34 TraesCS2D01G280300 chr6D 95.210 167 7 1 407 572 168264433 168264267 2.820000e-66 263.0
35 TraesCS2D01G280300 chr6D 95.210 167 7 1 407 572 389251441 389251275 2.820000e-66 263.0
36 TraesCS2D01G280300 chr6D 89.320 103 3 4 240 334 172740818 172740716 5.000000e-24 122.0
37 TraesCS2D01G280300 chr1B 90.291 103 2 4 240 334 421411642 421411744 1.070000e-25 128.0
38 TraesCS2D01G280300 chr7D 95.890 73 3 0 334 406 382040483 382040555 6.470000e-23 119.0
39 TraesCS2D01G280300 chr4D 97.143 70 2 0 337 406 123310224 123310155 6.470000e-23 119.0
40 TraesCS2D01G280300 chr4D 95.890 73 3 0 334 406 123458203 123458275 6.470000e-23 119.0
41 TraesCS2D01G280300 chr1D 95.890 73 3 0 334 406 209287150 209287222 6.470000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G280300 chr2D 352623657 352627342 3685 False 6807.000000 6807 100.000000 1 3686 1 chr2D.!!$F1 3685
1 TraesCS2D01G280300 chr2A 470429963 470433124 3161 False 1638.833333 4508 93.299667 1 3412 3 chr2A.!!$F2 3411
2 TraesCS2D01G280300 chr2B 418774508 418778524 4016 False 2306.500000 4241 95.650000 1 3327 2 chr2B.!!$F2 3326

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 304 0.036388 TCAGGCCGAAAGTCATGGAC 60.036 55.0 0.00 0.0 0.0 4.02 F
401 435 0.036388 GCCAATGGAGTTCGAGGTCA 60.036 55.0 2.05 0.0 0.0 4.02 F
406 440 0.037326 TGGAGTTCGAGGTCATGTGC 60.037 55.0 0.00 0.0 0.0 4.57 F
407 441 0.037326 GGAGTTCGAGGTCATGTGCA 60.037 55.0 0.00 0.0 0.0 4.57 F
2355 3460 0.686769 ATCGTAGGAGGAGGGCGTTT 60.687 55.0 0.00 0.0 0.0 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 3043 0.542702 CAACCCCAAGCACCTCCATT 60.543 55.000 0.0 0.00 0.00 3.16 R
2355 3460 0.555769 ACTGGCTGAACCCAAGGAAA 59.444 50.000 0.0 0.00 37.83 3.13 R
2409 3514 7.420800 CAACAAGCTTCAAATCTTTACTCTGT 58.579 34.615 0.0 0.00 0.00 3.41 R
2475 3580 3.744660 CCATGGCTGGTTATAGAAGTCC 58.255 50.000 0.0 0.00 37.79 3.85 R
3666 4786 0.393402 GGGTGTATGTTTCCGGGGAC 60.393 60.000 0.0 0.68 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.250154 TTGAGGGCCAAAATGGAGCG 61.250 55.000 6.18 0.00 40.96 5.03
65 66 9.125026 CGGGTTATAAGTCTAGGAACTAAACTA 57.875 37.037 0.00 0.00 42.04 2.24
241 275 9.613428 ACTTTACATGCTAGTGCTAAATATTCA 57.387 29.630 0.00 0.00 40.48 2.57
243 277 8.607441 TTACATGCTAGTGCTAAATATTCAGG 57.393 34.615 0.00 0.00 40.48 3.86
245 279 4.389374 TGCTAGTGCTAAATATTCAGGGC 58.611 43.478 0.00 0.00 40.48 5.19
246 280 3.753797 GCTAGTGCTAAATATTCAGGGCC 59.246 47.826 0.00 0.00 36.03 5.80
247 281 4.505742 GCTAGTGCTAAATATTCAGGGCCT 60.506 45.833 0.00 0.00 36.03 5.19
248 282 5.280011 GCTAGTGCTAAATATTCAGGGCCTA 60.280 44.000 5.28 0.00 36.03 3.93
249 283 5.646692 AGTGCTAAATATTCAGGGCCTAA 57.353 39.130 5.28 1.37 0.00 2.69
250 284 6.013554 AGTGCTAAATATTCAGGGCCTAAA 57.986 37.500 5.28 0.00 0.00 1.85
251 285 6.614657 AGTGCTAAATATTCAGGGCCTAAAT 58.385 36.000 5.28 6.40 0.00 1.40
252 286 6.717084 AGTGCTAAATATTCAGGGCCTAAATC 59.283 38.462 4.83 0.00 0.00 2.17
253 287 6.490040 GTGCTAAATATTCAGGGCCTAAATCA 59.510 38.462 4.83 0.00 0.00 2.57
254 288 6.716628 TGCTAAATATTCAGGGCCTAAATCAG 59.283 38.462 4.83 0.97 0.00 2.90
265 299 2.985896 CCTAAATCAGGCCGAAAGTCA 58.014 47.619 0.00 0.00 37.70 3.41
266 300 3.545703 CCTAAATCAGGCCGAAAGTCAT 58.454 45.455 0.00 0.00 37.70 3.06
267 301 3.313526 CCTAAATCAGGCCGAAAGTCATG 59.686 47.826 0.00 0.00 37.70 3.07
268 302 1.755179 AATCAGGCCGAAAGTCATGG 58.245 50.000 0.00 0.00 0.00 3.66
269 303 0.911769 ATCAGGCCGAAAGTCATGGA 59.088 50.000 0.00 0.00 0.00 3.41
270 304 0.036388 TCAGGCCGAAAGTCATGGAC 60.036 55.000 0.00 0.00 0.00 4.02
271 305 0.321564 CAGGCCGAAAGTCATGGACA 60.322 55.000 0.00 0.00 34.60 4.02
272 306 0.400213 AGGCCGAAAGTCATGGACAA 59.600 50.000 0.00 0.00 34.60 3.18
273 307 1.004745 AGGCCGAAAGTCATGGACAAT 59.995 47.619 0.00 0.00 34.60 2.71
274 308 1.133025 GGCCGAAAGTCATGGACAATG 59.867 52.381 0.00 0.00 34.60 2.82
275 309 1.133025 GCCGAAAGTCATGGACAATGG 59.867 52.381 0.00 0.00 36.86 3.16
276 310 1.745087 CCGAAAGTCATGGACAATGGG 59.255 52.381 0.00 0.00 36.86 4.00
277 311 2.436417 CGAAAGTCATGGACAATGGGT 58.564 47.619 0.00 0.00 36.86 4.51
278 312 2.420022 CGAAAGTCATGGACAATGGGTC 59.580 50.000 0.00 0.00 46.20 4.46
291 325 6.619801 GACAATGGGTCAATATTCCTGTAC 57.380 41.667 0.00 0.00 46.19 2.90
292 326 6.327386 ACAATGGGTCAATATTCCTGTACT 57.673 37.500 0.00 0.00 0.00 2.73
293 327 6.122277 ACAATGGGTCAATATTCCTGTACTG 58.878 40.000 0.00 0.00 0.00 2.74
294 328 4.150897 TGGGTCAATATTCCTGTACTGC 57.849 45.455 0.00 0.00 0.00 4.40
295 329 3.118038 TGGGTCAATATTCCTGTACTGCC 60.118 47.826 0.00 0.00 0.00 4.85
296 330 3.477530 GGTCAATATTCCTGTACTGCCC 58.522 50.000 0.00 0.00 0.00 5.36
297 331 3.477530 GTCAATATTCCTGTACTGCCCC 58.522 50.000 0.00 0.00 0.00 5.80
298 332 3.136626 GTCAATATTCCTGTACTGCCCCT 59.863 47.826 0.00 0.00 0.00 4.79
299 333 3.785887 TCAATATTCCTGTACTGCCCCTT 59.214 43.478 0.00 0.00 0.00 3.95
300 334 3.864789 ATATTCCTGTACTGCCCCTTG 57.135 47.619 0.00 0.00 0.00 3.61
301 335 1.372501 ATTCCTGTACTGCCCCTTGT 58.627 50.000 0.00 0.00 0.00 3.16
302 336 1.145571 TTCCTGTACTGCCCCTTGTT 58.854 50.000 0.00 0.00 0.00 2.83
303 337 0.400213 TCCTGTACTGCCCCTTGTTG 59.600 55.000 0.00 0.00 0.00 3.33
304 338 0.609131 CCTGTACTGCCCCTTGTTGG 60.609 60.000 0.00 0.00 0.00 3.77
305 339 0.110486 CTGTACTGCCCCTTGTTGGT 59.890 55.000 0.00 0.00 0.00 3.67
306 340 1.349688 CTGTACTGCCCCTTGTTGGTA 59.650 52.381 0.00 0.00 0.00 3.25
307 341 1.072648 TGTACTGCCCCTTGTTGGTAC 59.927 52.381 0.00 0.00 0.00 3.34
308 342 0.322322 TACTGCCCCTTGTTGGTACG 59.678 55.000 0.00 0.00 0.00 3.67
309 343 1.674322 CTGCCCCTTGTTGGTACGG 60.674 63.158 0.00 0.00 0.00 4.02
310 344 2.119484 CTGCCCCTTGTTGGTACGGA 62.119 60.000 0.00 0.00 0.00 4.69
311 345 1.376812 GCCCCTTGTTGGTACGGAG 60.377 63.158 0.00 0.00 0.00 4.63
312 346 1.298667 CCCCTTGTTGGTACGGAGG 59.701 63.158 0.00 0.00 32.73 4.30
313 347 1.298667 CCCTTGTTGGTACGGAGGG 59.701 63.158 0.00 0.00 41.28 4.30
314 348 1.196104 CCCTTGTTGGTACGGAGGGA 61.196 60.000 10.46 0.00 46.00 4.20
315 349 0.036671 CCTTGTTGGTACGGAGGGAC 60.037 60.000 0.00 0.00 30.57 4.46
316 350 0.389426 CTTGTTGGTACGGAGGGACG 60.389 60.000 0.00 0.00 40.31 4.79
317 351 1.818959 TTGTTGGTACGGAGGGACGG 61.819 60.000 0.00 0.00 38.39 4.79
318 352 1.978617 GTTGGTACGGAGGGACGGA 60.979 63.158 0.00 0.00 38.39 4.69
319 353 1.679977 TTGGTACGGAGGGACGGAG 60.680 63.158 0.00 0.00 38.39 4.63
320 354 2.832201 GGTACGGAGGGACGGAGG 60.832 72.222 0.00 0.00 38.39 4.30
321 355 2.273449 GTACGGAGGGACGGAGGA 59.727 66.667 0.00 0.00 38.39 3.71
322 356 1.823041 GTACGGAGGGACGGAGGAG 60.823 68.421 0.00 0.00 38.39 3.69
323 357 3.052909 TACGGAGGGACGGAGGAGG 62.053 68.421 0.00 0.00 38.39 4.30
325 359 4.467107 GGAGGGACGGAGGAGGCT 62.467 72.222 0.00 0.00 0.00 4.58
326 360 2.601868 GAGGGACGGAGGAGGCTA 59.398 66.667 0.00 0.00 0.00 3.93
327 361 1.529713 GAGGGACGGAGGAGGCTAG 60.530 68.421 0.00 0.00 0.00 3.42
328 362 2.522193 GGGACGGAGGAGGCTAGG 60.522 72.222 0.00 0.00 0.00 3.02
329 363 2.279408 GGACGGAGGAGGCTAGGT 59.721 66.667 0.00 0.00 0.00 3.08
330 364 1.381463 GGACGGAGGAGGCTAGGTT 60.381 63.158 0.00 0.00 0.00 3.50
331 365 0.106318 GGACGGAGGAGGCTAGGTTA 60.106 60.000 0.00 0.00 0.00 2.85
332 366 1.320507 GACGGAGGAGGCTAGGTTAG 58.679 60.000 0.00 0.00 0.00 2.34
349 383 5.469479 AGGTTAGCATGTTTTGGAAAATCG 58.531 37.500 0.00 0.00 0.00 3.34
350 384 5.242838 AGGTTAGCATGTTTTGGAAAATCGA 59.757 36.000 0.00 0.00 0.00 3.59
351 385 5.923684 GGTTAGCATGTTTTGGAAAATCGAA 59.076 36.000 0.00 0.00 0.00 3.71
352 386 6.589907 GGTTAGCATGTTTTGGAAAATCGAAT 59.410 34.615 0.00 0.00 0.00 3.34
353 387 7.411804 GGTTAGCATGTTTTGGAAAATCGAATG 60.412 37.037 0.00 0.00 0.00 2.67
354 388 5.540911 AGCATGTTTTGGAAAATCGAATGT 58.459 33.333 0.00 0.00 0.00 2.71
355 389 6.686630 AGCATGTTTTGGAAAATCGAATGTA 58.313 32.000 0.00 0.00 0.00 2.29
356 390 6.586082 AGCATGTTTTGGAAAATCGAATGTAC 59.414 34.615 0.00 0.00 0.00 2.90
357 391 6.364706 GCATGTTTTGGAAAATCGAATGTACA 59.635 34.615 0.00 0.00 0.00 2.90
358 392 7.095857 GCATGTTTTGGAAAATCGAATGTACAA 60.096 33.333 0.00 0.00 0.00 2.41
359 393 8.924691 CATGTTTTGGAAAATCGAATGTACAAT 58.075 29.630 0.00 0.00 0.00 2.71
360 394 8.514136 TGTTTTGGAAAATCGAATGTACAATC 57.486 30.769 0.00 0.00 0.00 2.67
361 395 8.356657 TGTTTTGGAAAATCGAATGTACAATCT 58.643 29.630 9.20 0.00 0.00 2.40
362 396 9.834628 GTTTTGGAAAATCGAATGTACAATCTA 57.165 29.630 9.20 0.00 0.00 1.98
365 399 9.613428 TTGGAAAATCGAATGTACAATCTATCT 57.387 29.630 9.20 0.00 0.00 1.98
366 400 9.613428 TGGAAAATCGAATGTACAATCTATCTT 57.387 29.630 9.20 0.00 0.00 2.40
374 408 9.360093 CGAATGTACAATCTATCTTCTTATCCC 57.640 37.037 9.20 0.00 0.00 3.85
375 409 9.360093 GAATGTACAATCTATCTTCTTATCCCG 57.640 37.037 0.00 0.00 0.00 5.14
376 410 7.834881 TGTACAATCTATCTTCTTATCCCGT 57.165 36.000 0.00 0.00 0.00 5.28
377 411 8.246430 TGTACAATCTATCTTCTTATCCCGTT 57.754 34.615 0.00 0.00 0.00 4.44
378 412 9.358406 TGTACAATCTATCTTCTTATCCCGTTA 57.642 33.333 0.00 0.00 0.00 3.18
379 413 9.843334 GTACAATCTATCTTCTTATCCCGTTAG 57.157 37.037 0.00 0.00 0.00 2.34
380 414 7.897864 ACAATCTATCTTCTTATCCCGTTAGG 58.102 38.462 0.00 0.00 37.24 2.69
389 423 1.912220 TCCCGTTAGGAGCCAATGG 59.088 57.895 0.00 0.00 40.93 3.16
390 424 0.619255 TCCCGTTAGGAGCCAATGGA 60.619 55.000 2.05 0.00 40.93 3.41
391 425 0.179045 CCCGTTAGGAGCCAATGGAG 60.179 60.000 2.05 0.00 41.02 3.86
392 426 0.541863 CCGTTAGGAGCCAATGGAGT 59.458 55.000 2.05 0.00 41.02 3.85
393 427 1.065418 CCGTTAGGAGCCAATGGAGTT 60.065 52.381 2.05 0.00 41.02 3.01
394 428 2.280628 CGTTAGGAGCCAATGGAGTTC 58.719 52.381 2.05 0.00 0.00 3.01
395 429 2.280628 GTTAGGAGCCAATGGAGTTCG 58.719 52.381 2.05 0.00 0.00 3.95
396 430 1.860641 TAGGAGCCAATGGAGTTCGA 58.139 50.000 2.05 0.00 0.00 3.71
397 431 0.539051 AGGAGCCAATGGAGTTCGAG 59.461 55.000 2.05 0.00 0.00 4.04
398 432 0.462759 GGAGCCAATGGAGTTCGAGG 60.463 60.000 2.05 0.00 0.00 4.63
399 433 0.250513 GAGCCAATGGAGTTCGAGGT 59.749 55.000 2.05 0.00 0.00 3.85
400 434 0.250513 AGCCAATGGAGTTCGAGGTC 59.749 55.000 2.05 0.00 0.00 3.85
401 435 0.036388 GCCAATGGAGTTCGAGGTCA 60.036 55.000 2.05 0.00 0.00 4.02
402 436 1.407437 GCCAATGGAGTTCGAGGTCAT 60.407 52.381 2.05 0.00 0.00 3.06
403 437 2.283298 CCAATGGAGTTCGAGGTCATG 58.717 52.381 0.00 0.00 0.00 3.07
404 438 2.355108 CCAATGGAGTTCGAGGTCATGT 60.355 50.000 0.00 0.00 0.00 3.21
405 439 2.674852 CAATGGAGTTCGAGGTCATGTG 59.325 50.000 0.00 0.00 0.00 3.21
406 440 0.037326 TGGAGTTCGAGGTCATGTGC 60.037 55.000 0.00 0.00 0.00 4.57
407 441 0.037326 GGAGTTCGAGGTCATGTGCA 60.037 55.000 0.00 0.00 0.00 4.57
408 442 1.406069 GGAGTTCGAGGTCATGTGCAT 60.406 52.381 0.00 0.00 0.00 3.96
409 443 2.350522 GAGTTCGAGGTCATGTGCATT 58.649 47.619 0.00 0.00 0.00 3.56
410 444 2.744202 GAGTTCGAGGTCATGTGCATTT 59.256 45.455 0.00 0.00 0.00 2.32
411 445 3.149196 AGTTCGAGGTCATGTGCATTTT 58.851 40.909 0.00 0.00 0.00 1.82
412 446 3.189287 AGTTCGAGGTCATGTGCATTTTC 59.811 43.478 0.00 0.00 0.00 2.29
413 447 2.777094 TCGAGGTCATGTGCATTTTCA 58.223 42.857 0.00 0.00 0.00 2.69
414 448 3.346315 TCGAGGTCATGTGCATTTTCAT 58.654 40.909 0.00 0.00 0.00 2.57
415 449 3.758023 TCGAGGTCATGTGCATTTTCATT 59.242 39.130 0.00 0.00 0.00 2.57
416 450 4.940654 TCGAGGTCATGTGCATTTTCATTA 59.059 37.500 0.00 0.00 0.00 1.90
417 451 5.414144 TCGAGGTCATGTGCATTTTCATTAA 59.586 36.000 0.00 0.00 0.00 1.40
418 452 6.095300 TCGAGGTCATGTGCATTTTCATTAAT 59.905 34.615 0.00 0.00 0.00 1.40
419 453 6.415867 CGAGGTCATGTGCATTTTCATTAATC 59.584 38.462 0.00 0.00 0.00 1.75
420 454 6.576185 AGGTCATGTGCATTTTCATTAATCC 58.424 36.000 0.00 0.00 0.00 3.01
421 455 6.154877 AGGTCATGTGCATTTTCATTAATCCA 59.845 34.615 0.00 0.00 0.00 3.41
422 456 6.987992 GGTCATGTGCATTTTCATTAATCCAT 59.012 34.615 0.00 0.00 0.00 3.41
423 457 7.042321 GGTCATGTGCATTTTCATTAATCCATG 60.042 37.037 0.00 0.00 0.00 3.66
424 458 7.707464 GTCATGTGCATTTTCATTAATCCATGA 59.293 33.333 0.00 0.00 34.32 3.07
425 459 8.258708 TCATGTGCATTTTCATTAATCCATGAA 58.741 29.630 0.00 0.00 40.68 2.57
426 460 7.830940 TGTGCATTTTCATTAATCCATGAAC 57.169 32.000 0.00 0.00 41.83 3.18
427 461 7.384477 TGTGCATTTTCATTAATCCATGAACA 58.616 30.769 0.00 3.74 41.83 3.18
428 462 7.876582 TGTGCATTTTCATTAATCCATGAACAA 59.123 29.630 0.00 0.00 41.83 2.83
429 463 8.719648 GTGCATTTTCATTAATCCATGAACAAA 58.280 29.630 0.00 0.00 41.83 2.83
430 464 9.281371 TGCATTTTCATTAATCCATGAACAAAA 57.719 25.926 0.00 0.00 41.83 2.44
448 482 9.936759 TGAACAAAATCTATGTATGTAGACACA 57.063 29.630 0.00 0.00 39.52 3.72
451 485 9.330063 ACAAAATCTATGTATGTAGACACATGG 57.670 33.333 0.00 0.00 45.17 3.66
452 486 9.546428 CAAAATCTATGTATGTAGACACATGGA 57.454 33.333 0.00 0.00 45.17 3.41
454 488 9.935241 AAATCTATGTATGTAGACACATGGATC 57.065 33.333 10.01 0.00 46.45 3.36
455 489 7.468141 TCTATGTATGTAGACACATGGATCC 57.532 40.000 4.20 4.20 45.17 3.36
456 490 4.584327 TGTATGTAGACACATGGATCCG 57.416 45.455 7.39 0.00 45.17 4.18
457 491 3.958147 TGTATGTAGACACATGGATCCGT 59.042 43.478 7.39 3.27 45.17 4.69
458 492 5.134661 TGTATGTAGACACATGGATCCGTA 58.865 41.667 6.04 0.00 45.17 4.02
459 493 4.585955 ATGTAGACACATGGATCCGTAC 57.414 45.455 6.04 0.47 43.89 3.67
460 494 3.358118 TGTAGACACATGGATCCGTACA 58.642 45.455 6.04 3.41 0.00 2.90
461 495 3.958147 TGTAGACACATGGATCCGTACAT 59.042 43.478 6.04 0.00 0.00 2.29
462 496 3.735237 AGACACATGGATCCGTACATC 57.265 47.619 6.04 4.39 0.00 3.06
463 497 3.300388 AGACACATGGATCCGTACATCT 58.700 45.455 6.04 6.68 0.00 2.90
464 498 3.319405 AGACACATGGATCCGTACATCTC 59.681 47.826 6.04 0.00 0.00 2.75
465 499 2.034685 ACACATGGATCCGTACATCTCG 59.965 50.000 6.04 0.00 0.00 4.04
466 500 2.293399 CACATGGATCCGTACATCTCGA 59.707 50.000 6.04 0.00 0.00 4.04
467 501 3.057245 CACATGGATCCGTACATCTCGAT 60.057 47.826 6.04 0.00 0.00 3.59
468 502 3.574396 ACATGGATCCGTACATCTCGATT 59.426 43.478 6.04 0.00 0.00 3.34
469 503 3.643159 TGGATCCGTACATCTCGATTG 57.357 47.619 7.39 0.00 0.00 2.67
470 504 3.219281 TGGATCCGTACATCTCGATTGA 58.781 45.455 7.39 0.00 0.00 2.57
471 505 3.634910 TGGATCCGTACATCTCGATTGAA 59.365 43.478 7.39 0.00 0.00 2.69
472 506 4.098807 TGGATCCGTACATCTCGATTGAAA 59.901 41.667 7.39 0.00 0.00 2.69
473 507 5.047847 GGATCCGTACATCTCGATTGAAAA 58.952 41.667 0.00 0.00 0.00 2.29
474 508 5.522460 GGATCCGTACATCTCGATTGAAAAA 59.478 40.000 0.00 0.00 0.00 1.94
475 509 6.202954 GGATCCGTACATCTCGATTGAAAAAT 59.797 38.462 0.00 0.00 0.00 1.82
476 510 7.384115 GGATCCGTACATCTCGATTGAAAAATA 59.616 37.037 0.00 0.00 0.00 1.40
477 511 8.657074 ATCCGTACATCTCGATTGAAAAATAA 57.343 30.769 2.79 0.00 0.00 1.40
478 512 8.657074 TCCGTACATCTCGATTGAAAAATAAT 57.343 30.769 2.79 0.00 0.00 1.28
479 513 8.761497 TCCGTACATCTCGATTGAAAAATAATC 58.239 33.333 2.79 0.00 0.00 1.75
480 514 8.547894 CCGTACATCTCGATTGAAAAATAATCA 58.452 33.333 2.79 0.00 34.90 2.57
481 515 9.914923 CGTACATCTCGATTGAAAAATAATCAA 57.085 29.630 2.79 0.00 40.76 2.57
498 532 9.495572 AAATAATCAATAGAAGGAGAATCGGAC 57.504 33.333 0.00 0.00 34.37 4.79
499 533 4.569761 TCAATAGAAGGAGAATCGGACG 57.430 45.455 0.00 0.00 34.37 4.79
500 534 4.204799 TCAATAGAAGGAGAATCGGACGA 58.795 43.478 0.00 0.00 34.37 4.20
501 535 4.827835 TCAATAGAAGGAGAATCGGACGAT 59.172 41.667 0.65 0.65 34.37 3.73
502 536 6.002082 TCAATAGAAGGAGAATCGGACGATA 58.998 40.000 7.72 0.00 34.37 2.92
503 537 6.659668 TCAATAGAAGGAGAATCGGACGATAT 59.340 38.462 7.72 0.00 34.37 1.63
504 538 6.687081 ATAGAAGGAGAATCGGACGATATC 57.313 41.667 7.72 9.04 34.37 1.63
505 539 4.658063 AGAAGGAGAATCGGACGATATCT 58.342 43.478 7.72 12.02 34.37 1.98
506 540 5.074115 AGAAGGAGAATCGGACGATATCTT 58.926 41.667 7.72 8.94 34.37 2.40
507 541 5.536916 AGAAGGAGAATCGGACGATATCTTT 59.463 40.000 7.72 11.18 34.37 2.52
508 542 5.379732 AGGAGAATCGGACGATATCTTTC 57.620 43.478 7.72 2.54 34.37 2.62
509 543 5.074115 AGGAGAATCGGACGATATCTTTCT 58.926 41.667 7.72 7.36 34.37 2.52
510 544 5.182380 AGGAGAATCGGACGATATCTTTCTC 59.818 44.000 19.08 19.08 37.23 2.87
511 545 5.037015 AGAATCGGACGATATCTTTCTCG 57.963 43.478 7.72 4.11 40.62 4.04
512 546 4.755629 AGAATCGGACGATATCTTTCTCGA 59.244 41.667 7.72 8.58 38.24 4.04
513 547 5.238868 AGAATCGGACGATATCTTTCTCGAA 59.761 40.000 7.72 0.00 38.24 3.71
514 548 4.888038 TCGGACGATATCTTTCTCGAAA 57.112 40.909 0.34 0.00 38.24 3.46
515 549 4.595116 TCGGACGATATCTTTCTCGAAAC 58.405 43.478 0.34 0.00 38.24 2.78
516 550 4.095334 TCGGACGATATCTTTCTCGAAACA 59.905 41.667 0.34 0.00 38.24 2.83
517 551 4.796830 CGGACGATATCTTTCTCGAAACAA 59.203 41.667 0.34 0.00 38.24 2.83
518 552 5.287752 CGGACGATATCTTTCTCGAAACAAA 59.712 40.000 0.34 0.00 38.24 2.83
519 553 6.467648 GGACGATATCTTTCTCGAAACAAAC 58.532 40.000 0.34 0.00 38.24 2.93
520 554 6.090358 GGACGATATCTTTCTCGAAACAAACA 59.910 38.462 0.34 0.00 38.24 2.83
521 555 7.359765 GGACGATATCTTTCTCGAAACAAACAA 60.360 37.037 0.34 0.00 38.24 2.83
522 556 7.857569 ACGATATCTTTCTCGAAACAAACAAA 58.142 30.769 0.34 0.00 38.24 2.83
523 557 8.339714 ACGATATCTTTCTCGAAACAAACAAAA 58.660 29.630 0.34 0.00 38.24 2.44
524 558 9.165014 CGATATCTTTCTCGAAACAAACAAAAA 57.835 29.630 0.34 0.00 37.05 1.94
527 561 8.980143 ATCTTTCTCGAAACAAACAAAAAGAA 57.020 26.923 0.00 0.00 35.74 2.52
528 562 8.804688 TCTTTCTCGAAACAAACAAAAAGAAA 57.195 26.923 0.00 0.00 30.83 2.52
529 563 9.250624 TCTTTCTCGAAACAAACAAAAAGAAAA 57.749 25.926 0.00 0.00 32.80 2.29
530 564 9.856803 CTTTCTCGAAACAAACAAAAAGAAAAA 57.143 25.926 0.00 0.00 32.80 1.94
531 565 9.856803 TTTCTCGAAACAAACAAAAAGAAAAAG 57.143 25.926 0.00 0.00 30.83 2.27
532 566 8.804688 TCTCGAAACAAACAAAAAGAAAAAGA 57.195 26.923 0.00 0.00 0.00 2.52
533 567 9.250624 TCTCGAAACAAACAAAAAGAAAAAGAA 57.749 25.926 0.00 0.00 0.00 2.52
534 568 9.856803 CTCGAAACAAACAAAAAGAAAAAGAAA 57.143 25.926 0.00 0.00 0.00 2.52
535 569 9.856803 TCGAAACAAACAAAAAGAAAAAGAAAG 57.143 25.926 0.00 0.00 0.00 2.62
536 570 9.856803 CGAAACAAACAAAAAGAAAAAGAAAGA 57.143 25.926 0.00 0.00 0.00 2.52
556 590 9.293404 AGAAAGAGAAAACTGAAATCATGATCA 57.707 29.630 9.06 3.61 0.00 2.92
557 591 9.903682 GAAAGAGAAAACTGAAATCATGATCAA 57.096 29.630 9.06 0.00 0.00 2.57
558 592 9.688592 AAAGAGAAAACTGAAATCATGATCAAC 57.311 29.630 9.06 4.41 0.00 3.18
559 593 8.632906 AGAGAAAACTGAAATCATGATCAACT 57.367 30.769 9.06 0.00 0.00 3.16
560 594 9.730705 AGAGAAAACTGAAATCATGATCAACTA 57.269 29.630 9.06 0.00 0.00 2.24
561 595 9.985318 GAGAAAACTGAAATCATGATCAACTAG 57.015 33.333 9.06 6.31 0.00 2.57
562 596 8.457261 AGAAAACTGAAATCATGATCAACTAGC 58.543 33.333 9.06 0.00 0.00 3.42
563 597 6.690194 AACTGAAATCATGATCAACTAGCC 57.310 37.500 9.06 0.00 0.00 3.93
564 598 5.128919 ACTGAAATCATGATCAACTAGCCC 58.871 41.667 9.06 0.00 0.00 5.19
565 599 5.104193 ACTGAAATCATGATCAACTAGCCCT 60.104 40.000 9.06 0.00 0.00 5.19
566 600 5.371526 TGAAATCATGATCAACTAGCCCTC 58.628 41.667 9.06 0.00 0.00 4.30
567 601 5.131642 TGAAATCATGATCAACTAGCCCTCT 59.868 40.000 9.06 0.00 0.00 3.69
568 602 4.888326 ATCATGATCAACTAGCCCTCTC 57.112 45.455 1.18 0.00 0.00 3.20
569 603 2.625314 TCATGATCAACTAGCCCTCTCG 59.375 50.000 0.00 0.00 0.00 4.04
570 604 2.437085 TGATCAACTAGCCCTCTCGA 57.563 50.000 0.00 0.00 0.00 4.04
599 633 5.611796 ACCGAACGAACCCTTAAAATAAC 57.388 39.130 0.00 0.00 0.00 1.89
616 650 2.125713 CGACGTGCATACCTGGCA 60.126 61.111 0.00 0.00 39.32 4.92
626 660 2.151202 CATACCTGGCAAACGTTCACT 58.849 47.619 0.00 0.00 0.00 3.41
631 665 2.489971 CTGGCAAACGTTCACTAGGAA 58.510 47.619 0.00 0.00 0.00 3.36
661 716 7.892778 TGACAGTTATTAGTGCGTTTTATGA 57.107 32.000 0.00 0.00 0.00 2.15
664 719 7.101054 ACAGTTATTAGTGCGTTTTATGAGGA 58.899 34.615 0.00 0.00 0.00 3.71
666 721 6.255020 AGTTATTAGTGCGTTTTATGAGGACG 59.745 38.462 0.00 0.00 39.61 4.79
720 1816 9.290483 GACAGTTTCTTTCTTTAAGAGGTTTTG 57.710 33.333 0.00 0.00 43.52 2.44
763 1859 1.511613 ATCCACCGGATGAAGATGGT 58.488 50.000 9.46 0.00 41.43 3.55
765 1861 2.397751 CACCGGATGAAGATGGTGC 58.602 57.895 9.46 0.00 44.69 5.01
981 2080 4.358851 CACCGAGATCTGATCTTGACTTC 58.641 47.826 28.68 12.64 42.34 3.01
1032 2131 2.675075 AACCCCAATCCCAACGCG 60.675 61.111 3.53 3.53 0.00 6.01
1773 2878 3.196685 AGAGGGTGACTATTGCTCTTGAC 59.803 47.826 0.00 0.00 0.00 3.18
1785 2890 3.348119 TGCTCTTGACTCGTCACTCTAT 58.652 45.455 0.00 0.00 39.66 1.98
1803 2908 4.624913 TCTATCCAGAGAACCCACTGATT 58.375 43.478 0.00 0.00 36.38 2.57
1806 2911 2.303022 TCCAGAGAACCCACTGATTGTC 59.697 50.000 0.00 0.00 36.38 3.18
1911 3016 5.238583 CGTCTGGAGATGAATTATAACCCC 58.761 45.833 0.00 0.00 32.95 4.95
1956 3061 1.005924 CTAATGGAGGTGCTTGGGGTT 59.994 52.381 0.00 0.00 0.00 4.11
1971 3076 1.668151 GGTTGAGGTGGACACTCGC 60.668 63.158 2.13 0.00 37.79 5.03
2040 3145 2.040412 ACAGAATCCAAGTGACCCTTCC 59.960 50.000 0.00 0.00 0.00 3.46
2109 3214 1.725641 TGAGGTTTGCTATGCTGTCG 58.274 50.000 0.00 0.00 0.00 4.35
2124 3229 2.793790 GCTGTCGCAGAAGATATCACAG 59.206 50.000 5.32 8.83 39.69 3.66
2298 3403 2.119801 AGGACATTGAGGCATGTGAC 57.880 50.000 0.00 0.00 0.00 3.67
2355 3460 0.686769 ATCGTAGGAGGAGGGCGTTT 60.687 55.000 0.00 0.00 0.00 3.60
2475 3580 1.791103 TTGAAAGGGAAAGGCGTGCG 61.791 55.000 0.00 0.00 0.00 5.34
2723 3831 4.862371 TCCCTTTGGTGTAGAAACAAGTT 58.138 39.130 0.00 0.00 37.36 2.66
2782 3890 9.813080 GTAGTGACAAGAAAATTGTTAGATGTC 57.187 33.333 0.00 0.00 37.15 3.06
3094 4205 3.762823 AGTCCTTGTCTTTAGTACCTCGG 59.237 47.826 0.00 0.00 0.00 4.63
3130 4242 2.203788 TGTCTCTTGGGCCGTCCT 60.204 61.111 0.00 0.00 36.20 3.85
3328 4448 8.915057 ATTATCACAATCAATTACTCCCTCTG 57.085 34.615 0.00 0.00 0.00 3.35
3329 4449 5.762179 TCACAATCAATTACTCCCTCTGT 57.238 39.130 0.00 0.00 0.00 3.41
3330 4450 6.126863 TCACAATCAATTACTCCCTCTGTT 57.873 37.500 0.00 0.00 0.00 3.16
3331 4451 7.252612 TCACAATCAATTACTCCCTCTGTTA 57.747 36.000 0.00 0.00 0.00 2.41
3332 4452 7.861629 TCACAATCAATTACTCCCTCTGTTAT 58.138 34.615 0.00 0.00 0.00 1.89
3333 4453 8.988060 TCACAATCAATTACTCCCTCTGTTATA 58.012 33.333 0.00 0.00 0.00 0.98
3334 4454 9.784531 CACAATCAATTACTCCCTCTGTTATAT 57.215 33.333 0.00 0.00 0.00 0.86
3358 4478 6.961359 TGGATGTAATAACGTCTTGTCTTG 57.039 37.500 0.00 0.00 40.82 3.02
3360 4480 7.604549 TGGATGTAATAACGTCTTGTCTTGTA 58.395 34.615 0.00 0.00 40.82 2.41
3361 4481 8.255206 TGGATGTAATAACGTCTTGTCTTGTAT 58.745 33.333 0.00 0.00 40.82 2.29
3362 4482 9.095065 GGATGTAATAACGTCTTGTCTTGTATT 57.905 33.333 0.00 0.00 40.82 1.89
3369 4489 7.813852 AACGTCTTGTCTTGTATTATCAGAC 57.186 36.000 0.00 0.00 0.00 3.51
3374 4494 5.515797 TGTCTTGTATTATCAGACGGAGG 57.484 43.478 0.00 0.00 32.68 4.30
3412 4532 4.262617 TGTTGCAACCAGTTACTTGTACA 58.737 39.130 26.14 0.18 0.00 2.90
3413 4533 4.700692 TGTTGCAACCAGTTACTTGTACAA 59.299 37.500 26.14 8.28 0.00 2.41
3414 4534 5.183331 TGTTGCAACCAGTTACTTGTACAAA 59.817 36.000 26.14 0.00 0.00 2.83
3415 4535 5.238006 TGCAACCAGTTACTTGTACAAAC 57.762 39.130 10.03 5.30 0.00 2.93
3416 4536 4.944930 TGCAACCAGTTACTTGTACAAACT 59.055 37.500 10.03 7.64 33.82 2.66
3417 4537 6.114089 TGCAACCAGTTACTTGTACAAACTA 58.886 36.000 10.03 0.00 32.35 2.24
3418 4538 6.259167 TGCAACCAGTTACTTGTACAAACTAG 59.741 38.462 10.03 6.31 32.35 2.57
3419 4539 6.293244 GCAACCAGTTACTTGTACAAACTAGG 60.293 42.308 10.03 14.73 33.36 3.02
3420 4540 5.303165 ACCAGTTACTTGTACAAACTAGGC 58.697 41.667 10.03 0.00 33.36 3.93
3421 4541 4.694037 CCAGTTACTTGTACAAACTAGGCC 59.306 45.833 10.03 0.00 33.36 5.19
3422 4542 4.694037 CAGTTACTTGTACAAACTAGGCCC 59.306 45.833 10.03 0.00 33.36 5.80
3423 4543 4.596212 AGTTACTTGTACAAACTAGGCCCT 59.404 41.667 10.03 0.00 33.36 5.19
3424 4544 3.418684 ACTTGTACAAACTAGGCCCTG 57.581 47.619 10.03 0.00 33.36 4.45
3425 4545 2.709397 ACTTGTACAAACTAGGCCCTGT 59.291 45.455 10.03 0.00 33.36 4.00
3426 4546 3.137728 ACTTGTACAAACTAGGCCCTGTT 59.862 43.478 10.03 1.32 33.36 3.16
3427 4547 3.868619 TGTACAAACTAGGCCCTGTTT 57.131 42.857 15.42 15.42 36.91 2.83
3430 4550 1.995376 CAAACTAGGCCCTGTTTGGT 58.005 50.000 29.10 7.55 45.22 3.67
3431 4551 2.316108 CAAACTAGGCCCTGTTTGGTT 58.684 47.619 29.10 12.48 45.22 3.67
3432 4552 2.287977 AACTAGGCCCTGTTTGGTTC 57.712 50.000 0.00 0.00 0.00 3.62
3433 4553 1.145571 ACTAGGCCCTGTTTGGTTCA 58.854 50.000 0.00 0.00 0.00 3.18
3434 4554 1.710809 ACTAGGCCCTGTTTGGTTCAT 59.289 47.619 0.00 0.00 0.00 2.57
3435 4555 2.916934 ACTAGGCCCTGTTTGGTTCATA 59.083 45.455 0.00 0.00 0.00 2.15
3436 4556 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
3437 4557 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
3438 4558 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
3439 4559 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
3440 4560 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
3441 4561 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
3442 4562 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
3443 4563 5.566469 CCCTGTTTGGTTCATAAGTCCTAA 58.434 41.667 0.00 0.00 0.00 2.69
3444 4564 6.007703 CCCTGTTTGGTTCATAAGTCCTAAA 58.992 40.000 0.00 0.00 0.00 1.85
3445 4565 6.492087 CCCTGTTTGGTTCATAAGTCCTAAAA 59.508 38.462 0.00 0.00 0.00 1.52
3446 4566 7.368059 CCTGTTTGGTTCATAAGTCCTAAAAC 58.632 38.462 0.00 0.00 0.00 2.43
3447 4567 7.230712 CCTGTTTGGTTCATAAGTCCTAAAACT 59.769 37.037 0.00 0.00 0.00 2.66
3448 4568 8.528044 TGTTTGGTTCATAAGTCCTAAAACTT 57.472 30.769 0.00 0.00 42.10 2.66
3449 4569 8.973182 TGTTTGGTTCATAAGTCCTAAAACTTT 58.027 29.630 0.00 0.00 40.01 2.66
3450 4570 9.811995 GTTTGGTTCATAAGTCCTAAAACTTTT 57.188 29.630 0.00 0.00 40.01 2.27
3475 4595 9.629878 TTTTTAGTCCCAACTTATAAGTCACAA 57.370 29.630 18.28 3.05 38.57 3.33
3476 4596 8.842358 TTTAGTCCCAACTTATAAGTCACAAG 57.158 34.615 18.28 6.66 38.57 3.16
3477 4597 6.435292 AGTCCCAACTTATAAGTCACAAGT 57.565 37.500 18.28 5.74 38.57 3.16
3478 4598 6.465084 AGTCCCAACTTATAAGTCACAAGTC 58.535 40.000 18.28 6.78 38.57 3.01
3479 4599 5.642491 GTCCCAACTTATAAGTCACAAGTCC 59.358 44.000 18.28 0.00 38.57 3.85
3480 4600 4.941873 CCCAACTTATAAGTCACAAGTCCC 59.058 45.833 18.28 0.00 38.57 4.46
3481 4601 5.280521 CCCAACTTATAAGTCACAAGTCCCT 60.281 44.000 18.28 0.00 38.57 4.20
3482 4602 6.070424 CCCAACTTATAAGTCACAAGTCCCTA 60.070 42.308 18.28 0.00 38.57 3.53
3483 4603 6.817140 CCAACTTATAAGTCACAAGTCCCTAC 59.183 42.308 18.28 0.00 38.57 3.18
3484 4604 6.541934 ACTTATAAGTCACAAGTCCCTACC 57.458 41.667 12.50 0.00 32.86 3.18
3485 4605 6.262207 ACTTATAAGTCACAAGTCCCTACCT 58.738 40.000 12.50 0.00 32.86 3.08
3486 4606 6.154706 ACTTATAAGTCACAAGTCCCTACCTG 59.845 42.308 12.50 0.00 32.86 4.00
3487 4607 2.400467 AGTCACAAGTCCCTACCTGT 57.600 50.000 0.00 0.00 30.10 4.00
3488 4608 2.690840 AGTCACAAGTCCCTACCTGTT 58.309 47.619 0.00 0.00 27.36 3.16
3489 4609 3.046374 AGTCACAAGTCCCTACCTGTTT 58.954 45.455 0.00 0.00 27.36 2.83
3490 4610 3.139077 GTCACAAGTCCCTACCTGTTTG 58.861 50.000 0.00 0.00 27.36 2.93
3491 4611 2.105821 TCACAAGTCCCTACCTGTTTGG 59.894 50.000 0.00 0.00 42.93 3.28
3502 4622 2.938956 CCTGTTTGGTTCCTGAGACT 57.061 50.000 0.00 0.00 0.00 3.24
3503 4623 3.214696 CCTGTTTGGTTCCTGAGACTT 57.785 47.619 0.00 0.00 0.00 3.01
3504 4624 4.351874 CCTGTTTGGTTCCTGAGACTTA 57.648 45.455 0.00 0.00 0.00 2.24
3505 4625 4.911390 CCTGTTTGGTTCCTGAGACTTAT 58.089 43.478 0.00 0.00 0.00 1.73
3506 4626 6.049955 CCTGTTTGGTTCCTGAGACTTATA 57.950 41.667 0.00 0.00 0.00 0.98
3507 4627 6.472887 CCTGTTTGGTTCCTGAGACTTATAA 58.527 40.000 0.00 0.00 0.00 0.98
3508 4628 6.595716 CCTGTTTGGTTCCTGAGACTTATAAG 59.404 42.308 11.05 11.05 0.00 1.73
3509 4629 7.074653 TGTTTGGTTCCTGAGACTTATAAGT 57.925 36.000 18.05 18.05 43.16 2.24
3576 4696 9.261035 TCTCCTTGAGAGTCTTATTTCATAAGT 57.739 33.333 0.00 0.00 43.71 2.24
3577 4697 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
3578 4698 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
3579 4699 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
3580 4700 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
3581 4701 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
3582 4702 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
3583 4703 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
3584 4704 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
3585 4705 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
3586 4706 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
3587 4707 7.068716 GTCTTATTTCATAAGTCCCAAATGCCT 59.931 37.037 3.93 0.00 42.21 4.75
3588 4708 8.278639 TCTTATTTCATAAGTCCCAAATGCCTA 58.721 33.333 3.93 0.00 42.21 3.93
3589 4709 6.715347 ATTTCATAAGTCCCAAATGCCTAC 57.285 37.500 0.00 0.00 0.00 3.18
3590 4710 5.450818 TTCATAAGTCCCAAATGCCTACT 57.549 39.130 0.00 0.00 0.00 2.57
3591 4711 5.450818 TCATAAGTCCCAAATGCCTACTT 57.549 39.130 0.00 0.00 34.86 2.24
3592 4712 5.826643 TCATAAGTCCCAAATGCCTACTTT 58.173 37.500 0.00 0.00 32.85 2.66
3593 4713 6.964464 TCATAAGTCCCAAATGCCTACTTTA 58.036 36.000 0.00 0.00 32.85 1.85
3594 4714 7.406916 TCATAAGTCCCAAATGCCTACTTTAA 58.593 34.615 0.00 0.00 32.85 1.52
3595 4715 7.556275 TCATAAGTCCCAAATGCCTACTTTAAG 59.444 37.037 0.00 0.00 32.85 1.85
3596 4716 5.256806 AGTCCCAAATGCCTACTTTAAGT 57.743 39.130 2.32 2.32 0.00 2.24
3597 4717 5.254115 AGTCCCAAATGCCTACTTTAAGTC 58.746 41.667 0.00 0.00 0.00 3.01
3598 4718 5.014228 AGTCCCAAATGCCTACTTTAAGTCT 59.986 40.000 0.00 0.00 0.00 3.24
3599 4719 5.354513 GTCCCAAATGCCTACTTTAAGTCTC 59.645 44.000 0.00 0.00 0.00 3.36
3600 4720 5.250774 TCCCAAATGCCTACTTTAAGTCTCT 59.749 40.000 0.00 0.00 0.00 3.10
3601 4721 6.442564 TCCCAAATGCCTACTTTAAGTCTCTA 59.557 38.462 0.00 0.00 0.00 2.43
3602 4722 7.127339 TCCCAAATGCCTACTTTAAGTCTCTAT 59.873 37.037 0.00 0.00 0.00 1.98
3603 4723 8.429641 CCCAAATGCCTACTTTAAGTCTCTATA 58.570 37.037 0.00 0.00 0.00 1.31
3604 4724 9.832445 CCAAATGCCTACTTTAAGTCTCTATAA 57.168 33.333 0.00 0.00 0.00 0.98
3608 4728 8.235359 TGCCTACTTTAAGTCTCTATAAGTCC 57.765 38.462 0.00 0.00 31.94 3.85
3609 4729 7.287235 TGCCTACTTTAAGTCTCTATAAGTCCC 59.713 40.741 0.00 0.00 31.94 4.46
3610 4730 7.506599 GCCTACTTTAAGTCTCTATAAGTCCCT 59.493 40.741 0.00 0.00 31.94 4.20
3611 4731 9.070179 CCTACTTTAAGTCTCTATAAGTCCCTC 57.930 40.741 0.00 0.00 31.94 4.30
3612 4732 7.901283 ACTTTAAGTCTCTATAAGTCCCTCC 57.099 40.000 0.00 0.00 0.00 4.30
3613 4733 7.654452 ACTTTAAGTCTCTATAAGTCCCTCCT 58.346 38.462 0.00 0.00 0.00 3.69
3614 4734 7.562088 ACTTTAAGTCTCTATAAGTCCCTCCTG 59.438 40.741 0.00 0.00 0.00 3.86
3615 4735 5.475398 AAGTCTCTATAAGTCCCTCCTGT 57.525 43.478 0.00 0.00 0.00 4.00
3616 4736 5.475398 AGTCTCTATAAGTCCCTCCTGTT 57.525 43.478 0.00 0.00 0.00 3.16
3617 4737 5.844601 AGTCTCTATAAGTCCCTCCTGTTT 58.155 41.667 0.00 0.00 0.00 2.83
3618 4738 5.659079 AGTCTCTATAAGTCCCTCCTGTTTG 59.341 44.000 0.00 0.00 0.00 2.93
3619 4739 4.962995 TCTCTATAAGTCCCTCCTGTTTGG 59.037 45.833 0.00 0.00 37.10 3.28
3620 4740 4.695606 TCTATAAGTCCCTCCTGTTTGGT 58.304 43.478 0.00 0.00 37.07 3.67
3621 4741 5.098663 TCTATAAGTCCCTCCTGTTTGGTT 58.901 41.667 0.00 0.00 37.07 3.67
3622 4742 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
3623 4743 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
3624 4744 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
3625 4745 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
3626 4746 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
3627 4747 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
3628 4748 3.913799 TCCCTCCTGTTTGGTTTAGATGA 59.086 43.478 0.00 0.00 37.07 2.92
3629 4749 4.352595 TCCCTCCTGTTTGGTTTAGATGAA 59.647 41.667 0.00 0.00 37.07 2.57
3630 4750 5.076873 CCCTCCTGTTTGGTTTAGATGAAA 58.923 41.667 0.00 0.00 37.07 2.69
3631 4751 5.048013 CCCTCCTGTTTGGTTTAGATGAAAC 60.048 44.000 0.00 0.00 45.80 2.78
3632 4752 5.770162 CCTCCTGTTTGGTTTAGATGAAACT 59.230 40.000 0.00 0.00 45.80 2.66
3633 4753 6.265422 CCTCCTGTTTGGTTTAGATGAAACTT 59.735 38.462 0.00 0.00 45.80 2.66
3634 4754 7.447238 CCTCCTGTTTGGTTTAGATGAAACTTA 59.553 37.037 0.00 0.00 45.80 2.24
3635 4755 8.934023 TCCTGTTTGGTTTAGATGAAACTTAT 57.066 30.769 0.00 0.00 45.80 1.73
3639 4759 9.238368 TGTTTGGTTTAGATGAAACTTATAGGG 57.762 33.333 0.00 0.00 45.80 3.53
3640 4760 9.457436 GTTTGGTTTAGATGAAACTTATAGGGA 57.543 33.333 0.66 0.00 45.80 4.20
3666 4786 6.538945 TTTTTAAGCCCCTAAGCCAATAAG 57.461 37.500 0.00 0.00 0.00 1.73
3667 4787 4.873724 TTAAGCCCCTAAGCCAATAAGT 57.126 40.909 0.00 0.00 0.00 2.24
3668 4788 3.298686 AAGCCCCTAAGCCAATAAGTC 57.701 47.619 0.00 0.00 0.00 3.01
3669 4789 1.495148 AGCCCCTAAGCCAATAAGTCC 59.505 52.381 0.00 0.00 0.00 3.85
3670 4790 1.478837 GCCCCTAAGCCAATAAGTCCC 60.479 57.143 0.00 0.00 0.00 4.46
3671 4791 1.145119 CCCCTAAGCCAATAAGTCCCC 59.855 57.143 0.00 0.00 0.00 4.81
3672 4792 1.202770 CCCTAAGCCAATAAGTCCCCG 60.203 57.143 0.00 0.00 0.00 5.73
3673 4793 1.202770 CCTAAGCCAATAAGTCCCCGG 60.203 57.143 0.00 0.00 0.00 5.73
3674 4794 1.766496 CTAAGCCAATAAGTCCCCGGA 59.234 52.381 0.73 0.00 0.00 5.14
3675 4795 0.996583 AAGCCAATAAGTCCCCGGAA 59.003 50.000 0.73 0.00 0.00 4.30
3676 4796 0.996583 AGCCAATAAGTCCCCGGAAA 59.003 50.000 0.73 0.00 0.00 3.13
3677 4797 1.100510 GCCAATAAGTCCCCGGAAAC 58.899 55.000 0.73 0.00 0.00 2.78
3678 4798 1.614850 GCCAATAAGTCCCCGGAAACA 60.615 52.381 0.73 0.00 0.00 2.83
3679 4799 2.948600 GCCAATAAGTCCCCGGAAACAT 60.949 50.000 0.73 0.00 0.00 2.71
3680 4800 3.686120 GCCAATAAGTCCCCGGAAACATA 60.686 47.826 0.73 0.00 0.00 2.29
3681 4801 3.881089 CCAATAAGTCCCCGGAAACATAC 59.119 47.826 0.73 0.00 0.00 2.39
3682 4802 4.519213 CAATAAGTCCCCGGAAACATACA 58.481 43.478 0.73 0.00 0.00 2.29
3683 4803 2.484742 AAGTCCCCGGAAACATACAC 57.515 50.000 0.73 0.00 0.00 2.90
3684 4804 0.616891 AGTCCCCGGAAACATACACC 59.383 55.000 0.73 0.00 0.00 4.16
3685 4805 0.393402 GTCCCCGGAAACATACACCC 60.393 60.000 0.73 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 6.491403 AGCCATCAAACTTATCAAGAAGTTGT 59.509 34.615 3.72 0.00 46.52 3.32
246 280 3.313526 CCATGACTTTCGGCCTGATTTAG 59.686 47.826 0.00 1.44 0.00 1.85
247 281 3.054728 TCCATGACTTTCGGCCTGATTTA 60.055 43.478 0.00 0.00 0.00 1.40
248 282 2.094675 CCATGACTTTCGGCCTGATTT 58.905 47.619 0.00 0.00 0.00 2.17
249 283 1.281867 TCCATGACTTTCGGCCTGATT 59.718 47.619 0.00 0.00 0.00 2.57
250 284 0.911769 TCCATGACTTTCGGCCTGAT 59.088 50.000 0.00 0.00 0.00 2.90
251 285 0.036388 GTCCATGACTTTCGGCCTGA 60.036 55.000 0.00 0.00 0.00 3.86
252 286 0.321564 TGTCCATGACTTTCGGCCTG 60.322 55.000 0.00 0.00 33.15 4.85
253 287 0.400213 TTGTCCATGACTTTCGGCCT 59.600 50.000 0.00 0.00 33.15 5.19
254 288 1.133025 CATTGTCCATGACTTTCGGCC 59.867 52.381 0.00 0.00 34.31 6.13
255 289 1.133025 CCATTGTCCATGACTTTCGGC 59.867 52.381 0.00 0.00 34.31 5.54
256 290 1.745087 CCCATTGTCCATGACTTTCGG 59.255 52.381 0.00 0.00 34.31 4.30
257 291 2.420022 GACCCATTGTCCATGACTTTCG 59.580 50.000 0.00 0.00 38.09 3.46
258 292 3.420893 TGACCCATTGTCCATGACTTTC 58.579 45.455 0.00 0.00 43.78 2.62
259 293 3.524095 TGACCCATTGTCCATGACTTT 57.476 42.857 0.00 0.00 43.78 2.66
260 294 3.524095 TTGACCCATTGTCCATGACTT 57.476 42.857 0.00 0.00 43.78 3.01
261 295 3.744940 ATTGACCCATTGTCCATGACT 57.255 42.857 0.00 0.00 43.78 3.41
262 296 5.010012 GGAATATTGACCCATTGTCCATGAC 59.990 44.000 0.00 0.00 43.78 3.06
263 297 5.103558 AGGAATATTGACCCATTGTCCATGA 60.104 40.000 0.00 0.00 43.78 3.07
264 298 5.010314 CAGGAATATTGACCCATTGTCCATG 59.990 44.000 0.00 0.00 43.78 3.66
265 299 5.142639 CAGGAATATTGACCCATTGTCCAT 58.857 41.667 0.00 0.00 43.78 3.41
266 300 4.017591 ACAGGAATATTGACCCATTGTCCA 60.018 41.667 0.00 0.00 43.78 4.02
267 301 4.536765 ACAGGAATATTGACCCATTGTCC 58.463 43.478 0.00 0.00 43.78 4.02
268 302 6.260936 CAGTACAGGAATATTGACCCATTGTC 59.739 42.308 0.00 0.00 44.72 3.18
269 303 6.122277 CAGTACAGGAATATTGACCCATTGT 58.878 40.000 0.00 0.00 0.00 2.71
270 304 5.009010 GCAGTACAGGAATATTGACCCATTG 59.991 44.000 0.00 0.00 0.00 2.82
271 305 5.133221 GCAGTACAGGAATATTGACCCATT 58.867 41.667 0.00 0.00 0.00 3.16
272 306 4.446311 GGCAGTACAGGAATATTGACCCAT 60.446 45.833 0.00 0.00 0.00 4.00
273 307 3.118038 GGCAGTACAGGAATATTGACCCA 60.118 47.826 0.00 0.00 0.00 4.51
274 308 3.477530 GGCAGTACAGGAATATTGACCC 58.522 50.000 0.00 0.00 0.00 4.46
275 309 3.477530 GGGCAGTACAGGAATATTGACC 58.522 50.000 0.00 0.00 33.23 4.02
276 310 3.136626 AGGGGCAGTACAGGAATATTGAC 59.863 47.826 0.00 0.00 0.00 3.18
277 311 3.393687 AGGGGCAGTACAGGAATATTGA 58.606 45.455 0.00 0.00 0.00 2.57
278 312 3.864789 AGGGGCAGTACAGGAATATTG 57.135 47.619 0.00 0.00 0.00 1.90
279 313 3.527665 ACAAGGGGCAGTACAGGAATATT 59.472 43.478 0.00 0.00 0.00 1.28
280 314 3.123273 ACAAGGGGCAGTACAGGAATAT 58.877 45.455 0.00 0.00 0.00 1.28
281 315 2.557869 ACAAGGGGCAGTACAGGAATA 58.442 47.619 0.00 0.00 0.00 1.75
282 316 1.372501 ACAAGGGGCAGTACAGGAAT 58.627 50.000 0.00 0.00 0.00 3.01
283 317 1.145571 AACAAGGGGCAGTACAGGAA 58.854 50.000 0.00 0.00 0.00 3.36
284 318 0.400213 CAACAAGGGGCAGTACAGGA 59.600 55.000 0.00 0.00 0.00 3.86
285 319 0.609131 CCAACAAGGGGCAGTACAGG 60.609 60.000 0.00 0.00 0.00 4.00
286 320 0.110486 ACCAACAAGGGGCAGTACAG 59.890 55.000 0.00 0.00 43.89 2.74
287 321 1.072648 GTACCAACAAGGGGCAGTACA 59.927 52.381 0.00 0.00 43.89 2.90
288 322 1.817357 GTACCAACAAGGGGCAGTAC 58.183 55.000 0.00 0.00 43.89 2.73
289 323 0.322322 CGTACCAACAAGGGGCAGTA 59.678 55.000 0.00 0.00 43.89 2.74
290 324 1.072505 CGTACCAACAAGGGGCAGT 59.927 57.895 0.00 0.00 43.89 4.40
291 325 1.674322 CCGTACCAACAAGGGGCAG 60.674 63.158 0.00 0.00 43.89 4.85
292 326 2.119484 CTCCGTACCAACAAGGGGCA 62.119 60.000 0.00 0.00 43.89 5.36
293 327 1.376812 CTCCGTACCAACAAGGGGC 60.377 63.158 0.00 0.00 43.89 5.80
294 328 1.298667 CCTCCGTACCAACAAGGGG 59.701 63.158 0.00 0.00 43.89 4.79
295 329 1.196104 TCCCTCCGTACCAACAAGGG 61.196 60.000 0.00 0.00 44.49 3.95
296 330 0.036671 GTCCCTCCGTACCAACAAGG 60.037 60.000 0.00 0.00 45.67 3.61
297 331 0.389426 CGTCCCTCCGTACCAACAAG 60.389 60.000 0.00 0.00 0.00 3.16
298 332 1.667151 CGTCCCTCCGTACCAACAA 59.333 57.895 0.00 0.00 0.00 2.83
299 333 2.277591 CCGTCCCTCCGTACCAACA 61.278 63.158 0.00 0.00 0.00 3.33
300 334 1.941999 CTCCGTCCCTCCGTACCAAC 61.942 65.000 0.00 0.00 0.00 3.77
301 335 1.679977 CTCCGTCCCTCCGTACCAA 60.680 63.158 0.00 0.00 0.00 3.67
302 336 2.044650 CTCCGTCCCTCCGTACCA 60.045 66.667 0.00 0.00 0.00 3.25
303 337 2.832201 CCTCCGTCCCTCCGTACC 60.832 72.222 0.00 0.00 0.00 3.34
304 338 1.823041 CTCCTCCGTCCCTCCGTAC 60.823 68.421 0.00 0.00 0.00 3.67
305 339 2.593978 CTCCTCCGTCCCTCCGTA 59.406 66.667 0.00 0.00 0.00 4.02
306 340 4.444081 CCTCCTCCGTCCCTCCGT 62.444 72.222 0.00 0.00 0.00 4.69
308 342 2.987355 CTAGCCTCCTCCGTCCCTCC 62.987 70.000 0.00 0.00 0.00 4.30
309 343 1.529713 CTAGCCTCCTCCGTCCCTC 60.530 68.421 0.00 0.00 0.00 4.30
310 344 2.604152 CTAGCCTCCTCCGTCCCT 59.396 66.667 0.00 0.00 0.00 4.20
311 345 2.522193 CCTAGCCTCCTCCGTCCC 60.522 72.222 0.00 0.00 0.00 4.46
312 346 0.106318 TAACCTAGCCTCCTCCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
313 347 1.320507 CTAACCTAGCCTCCTCCGTC 58.679 60.000 0.00 0.00 0.00 4.79
314 348 0.756070 GCTAACCTAGCCTCCTCCGT 60.756 60.000 0.00 0.00 45.95 4.69
315 349 2.042800 GCTAACCTAGCCTCCTCCG 58.957 63.158 0.00 0.00 45.95 4.63
324 358 6.747280 CGATTTTCCAAAACATGCTAACCTAG 59.253 38.462 0.00 0.00 0.00 3.02
325 359 6.431543 TCGATTTTCCAAAACATGCTAACCTA 59.568 34.615 0.00 0.00 0.00 3.08
326 360 5.242838 TCGATTTTCCAAAACATGCTAACCT 59.757 36.000 0.00 0.00 0.00 3.50
327 361 5.465935 TCGATTTTCCAAAACATGCTAACC 58.534 37.500 0.00 0.00 0.00 2.85
328 362 7.116233 ACATTCGATTTTCCAAAACATGCTAAC 59.884 33.333 0.00 0.00 0.00 2.34
329 363 7.151308 ACATTCGATTTTCCAAAACATGCTAA 58.849 30.769 0.00 0.00 0.00 3.09
330 364 6.686630 ACATTCGATTTTCCAAAACATGCTA 58.313 32.000 0.00 0.00 0.00 3.49
331 365 5.540911 ACATTCGATTTTCCAAAACATGCT 58.459 33.333 0.00 0.00 0.00 3.79
332 366 5.844301 ACATTCGATTTTCCAAAACATGC 57.156 34.783 0.00 0.00 0.00 4.06
333 367 7.865875 TGTACATTCGATTTTCCAAAACATG 57.134 32.000 0.00 0.00 0.00 3.21
334 368 9.139174 GATTGTACATTCGATTTTCCAAAACAT 57.861 29.630 0.00 0.00 0.00 2.71
335 369 8.356657 AGATTGTACATTCGATTTTCCAAAACA 58.643 29.630 11.12 0.00 0.00 2.83
336 370 8.742554 AGATTGTACATTCGATTTTCCAAAAC 57.257 30.769 11.12 0.00 0.00 2.43
339 373 9.613428 AGATAGATTGTACATTCGATTTTCCAA 57.387 29.630 12.64 0.00 0.00 3.53
340 374 9.613428 AAGATAGATTGTACATTCGATTTTCCA 57.387 29.630 12.64 0.00 0.00 3.53
348 382 9.360093 GGGATAAGAAGATAGATTGTACATTCG 57.640 37.037 11.12 0.00 0.00 3.34
349 383 9.360093 CGGGATAAGAAGATAGATTGTACATTC 57.640 37.037 9.30 9.30 0.00 2.67
350 384 8.871125 ACGGGATAAGAAGATAGATTGTACATT 58.129 33.333 0.00 0.00 0.00 2.71
351 385 8.423906 ACGGGATAAGAAGATAGATTGTACAT 57.576 34.615 0.00 0.00 0.00 2.29
352 386 7.834881 ACGGGATAAGAAGATAGATTGTACA 57.165 36.000 0.00 0.00 0.00 2.90
353 387 9.843334 CTAACGGGATAAGAAGATAGATTGTAC 57.157 37.037 0.00 0.00 0.00 2.90
354 388 9.021807 CCTAACGGGATAAGAAGATAGATTGTA 57.978 37.037 0.00 0.00 37.23 2.41
355 389 7.728981 TCCTAACGGGATAAGAAGATAGATTGT 59.271 37.037 0.00 0.00 39.58 2.71
356 390 8.123639 TCCTAACGGGATAAGAAGATAGATTG 57.876 38.462 0.00 0.00 39.58 2.67
357 391 7.093684 GCTCCTAACGGGATAAGAAGATAGATT 60.094 40.741 0.00 0.00 44.15 2.40
358 392 6.378848 GCTCCTAACGGGATAAGAAGATAGAT 59.621 42.308 0.00 0.00 44.15 1.98
359 393 5.711036 GCTCCTAACGGGATAAGAAGATAGA 59.289 44.000 0.00 0.00 44.15 1.98
360 394 5.105675 GGCTCCTAACGGGATAAGAAGATAG 60.106 48.000 0.00 0.00 44.15 2.08
361 395 4.771054 GGCTCCTAACGGGATAAGAAGATA 59.229 45.833 0.00 0.00 44.15 1.98
362 396 3.579151 GGCTCCTAACGGGATAAGAAGAT 59.421 47.826 0.00 0.00 44.15 2.40
363 397 2.963782 GGCTCCTAACGGGATAAGAAGA 59.036 50.000 0.00 0.00 44.15 2.87
364 398 2.698797 TGGCTCCTAACGGGATAAGAAG 59.301 50.000 0.00 0.00 44.15 2.85
365 399 2.754465 TGGCTCCTAACGGGATAAGAA 58.246 47.619 0.00 0.00 44.15 2.52
366 400 2.464796 TGGCTCCTAACGGGATAAGA 57.535 50.000 0.00 0.00 44.15 2.10
367 401 3.403038 CATTGGCTCCTAACGGGATAAG 58.597 50.000 0.00 0.00 44.15 1.73
368 402 2.105821 CCATTGGCTCCTAACGGGATAA 59.894 50.000 0.00 0.00 44.15 1.75
369 403 1.697432 CCATTGGCTCCTAACGGGATA 59.303 52.381 0.00 0.00 44.15 2.59
370 404 0.474184 CCATTGGCTCCTAACGGGAT 59.526 55.000 0.00 0.00 44.15 3.85
371 405 0.619255 TCCATTGGCTCCTAACGGGA 60.619 55.000 0.00 0.00 42.77 5.14
372 406 0.179045 CTCCATTGGCTCCTAACGGG 60.179 60.000 0.00 0.00 0.00 5.28
373 407 0.541863 ACTCCATTGGCTCCTAACGG 59.458 55.000 0.00 0.00 0.00 4.44
374 408 2.280628 GAACTCCATTGGCTCCTAACG 58.719 52.381 0.00 0.00 0.00 3.18
375 409 2.093658 TCGAACTCCATTGGCTCCTAAC 60.094 50.000 0.00 0.00 0.00 2.34
376 410 2.168521 CTCGAACTCCATTGGCTCCTAA 59.831 50.000 0.00 0.00 0.00 2.69
377 411 1.757118 CTCGAACTCCATTGGCTCCTA 59.243 52.381 0.00 0.00 0.00 2.94
378 412 0.539051 CTCGAACTCCATTGGCTCCT 59.461 55.000 0.00 0.00 0.00 3.69
379 413 0.462759 CCTCGAACTCCATTGGCTCC 60.463 60.000 0.00 0.00 0.00 4.70
380 414 0.250513 ACCTCGAACTCCATTGGCTC 59.749 55.000 0.00 0.00 0.00 4.70
381 415 0.250513 GACCTCGAACTCCATTGGCT 59.749 55.000 0.00 0.00 0.00 4.75
382 416 0.036388 TGACCTCGAACTCCATTGGC 60.036 55.000 0.00 0.00 0.00 4.52
383 417 2.283298 CATGACCTCGAACTCCATTGG 58.717 52.381 0.00 0.00 0.00 3.16
384 418 2.674852 CACATGACCTCGAACTCCATTG 59.325 50.000 0.00 0.00 0.00 2.82
385 419 2.936993 GCACATGACCTCGAACTCCATT 60.937 50.000 0.00 0.00 0.00 3.16
386 420 1.406069 GCACATGACCTCGAACTCCAT 60.406 52.381 0.00 0.00 0.00 3.41
387 421 0.037326 GCACATGACCTCGAACTCCA 60.037 55.000 0.00 0.00 0.00 3.86
388 422 0.037326 TGCACATGACCTCGAACTCC 60.037 55.000 0.00 0.00 0.00 3.85
389 423 2.015736 ATGCACATGACCTCGAACTC 57.984 50.000 0.00 0.00 0.00 3.01
390 424 2.479566 AATGCACATGACCTCGAACT 57.520 45.000 0.00 0.00 0.00 3.01
391 425 3.058293 TGAAAATGCACATGACCTCGAAC 60.058 43.478 0.00 0.00 0.00 3.95
392 426 3.145286 TGAAAATGCACATGACCTCGAA 58.855 40.909 0.00 0.00 0.00 3.71
393 427 2.777094 TGAAAATGCACATGACCTCGA 58.223 42.857 0.00 0.00 0.00 4.04
394 428 3.770263 ATGAAAATGCACATGACCTCG 57.230 42.857 0.00 0.00 0.00 4.63
395 429 6.698766 GGATTAATGAAAATGCACATGACCTC 59.301 38.462 0.00 0.00 0.00 3.85
396 430 6.154877 TGGATTAATGAAAATGCACATGACCT 59.845 34.615 0.00 0.00 32.95 3.85
397 431 6.339730 TGGATTAATGAAAATGCACATGACC 58.660 36.000 0.00 0.00 32.95 4.02
398 432 7.707464 TCATGGATTAATGAAAATGCACATGAC 59.293 33.333 0.00 0.00 39.57 3.06
399 433 7.783042 TCATGGATTAATGAAAATGCACATGA 58.217 30.769 0.00 0.00 39.57 3.07
400 434 8.332464 GTTCATGGATTAATGAAAATGCACATG 58.668 33.333 0.00 0.00 45.60 3.21
401 435 8.041919 TGTTCATGGATTAATGAAAATGCACAT 58.958 29.630 0.00 0.00 45.60 3.21
402 436 7.384477 TGTTCATGGATTAATGAAAATGCACA 58.616 30.769 0.00 0.00 45.60 4.57
403 437 7.830940 TGTTCATGGATTAATGAAAATGCAC 57.169 32.000 0.00 0.00 45.60 4.57
404 438 8.843885 TTTGTTCATGGATTAATGAAAATGCA 57.156 26.923 0.00 0.00 45.60 3.96
422 456 9.936759 TGTGTCTACATACATAGATTTTGTTCA 57.063 29.630 0.00 0.00 33.78 3.18
425 459 9.330063 CCATGTGTCTACATACATAGATTTTGT 57.670 33.333 0.00 0.00 45.53 2.83
426 460 9.546428 TCCATGTGTCTACATACATAGATTTTG 57.454 33.333 0.00 0.00 45.53 2.44
428 462 9.935241 GATCCATGTGTCTACATACATAGATTT 57.065 33.333 0.00 0.00 45.53 2.17
429 463 8.535335 GGATCCATGTGTCTACATACATAGATT 58.465 37.037 6.95 0.00 45.53 2.40
430 464 7.148000 CGGATCCATGTGTCTACATACATAGAT 60.148 40.741 13.41 0.00 45.53 1.98
431 465 6.151144 CGGATCCATGTGTCTACATACATAGA 59.849 42.308 13.41 0.00 45.53 1.98
432 466 6.071896 ACGGATCCATGTGTCTACATACATAG 60.072 42.308 13.41 0.00 45.53 2.23
433 467 5.773176 ACGGATCCATGTGTCTACATACATA 59.227 40.000 13.41 0.00 45.53 2.29
434 468 4.588951 ACGGATCCATGTGTCTACATACAT 59.411 41.667 13.41 0.00 45.53 2.29
435 469 3.958147 ACGGATCCATGTGTCTACATACA 59.042 43.478 13.41 0.00 45.53 2.29
436 470 4.585955 ACGGATCCATGTGTCTACATAC 57.414 45.455 13.41 0.00 45.53 2.39
437 471 5.134661 TGTACGGATCCATGTGTCTACATA 58.865 41.667 13.41 0.00 45.53 2.29
439 473 3.358118 TGTACGGATCCATGTGTCTACA 58.642 45.455 13.41 1.07 41.89 2.74
440 474 4.278669 AGATGTACGGATCCATGTGTCTAC 59.721 45.833 13.41 0.00 0.00 2.59
441 475 4.470602 AGATGTACGGATCCATGTGTCTA 58.529 43.478 13.41 0.00 0.00 2.59
442 476 3.300388 AGATGTACGGATCCATGTGTCT 58.700 45.455 13.41 6.36 0.00 3.41
443 477 3.643763 GAGATGTACGGATCCATGTGTC 58.356 50.000 13.41 4.02 0.00 3.67
444 478 2.034685 CGAGATGTACGGATCCATGTGT 59.965 50.000 13.41 3.78 0.00 3.72
445 479 2.293399 TCGAGATGTACGGATCCATGTG 59.707 50.000 13.41 0.00 0.00 3.21
446 480 2.583143 TCGAGATGTACGGATCCATGT 58.417 47.619 13.41 4.96 0.00 3.21
447 481 3.857549 ATCGAGATGTACGGATCCATG 57.142 47.619 13.41 0.00 0.00 3.66
448 482 3.826729 TCAATCGAGATGTACGGATCCAT 59.173 43.478 13.41 0.00 0.00 3.41
449 483 3.219281 TCAATCGAGATGTACGGATCCA 58.781 45.455 13.41 0.00 0.00 3.41
450 484 3.917329 TCAATCGAGATGTACGGATCC 57.083 47.619 0.00 0.00 0.00 3.36
451 485 6.583912 TTTTTCAATCGAGATGTACGGATC 57.416 37.500 0.00 0.00 0.00 3.36
452 486 8.657074 TTATTTTTCAATCGAGATGTACGGAT 57.343 30.769 0.00 0.00 0.00 4.18
453 487 8.657074 ATTATTTTTCAATCGAGATGTACGGA 57.343 30.769 0.00 0.00 0.00 4.69
454 488 8.547894 TGATTATTTTTCAATCGAGATGTACGG 58.452 33.333 0.00 0.00 35.55 4.02
455 489 9.914923 TTGATTATTTTTCAATCGAGATGTACG 57.085 29.630 0.00 0.00 35.55 3.67
472 506 9.495572 GTCCGATTCTCCTTCTATTGATTATTT 57.504 33.333 0.00 0.00 0.00 1.40
473 507 7.815068 CGTCCGATTCTCCTTCTATTGATTATT 59.185 37.037 0.00 0.00 0.00 1.40
474 508 7.176865 TCGTCCGATTCTCCTTCTATTGATTAT 59.823 37.037 0.00 0.00 0.00 1.28
475 509 6.489022 TCGTCCGATTCTCCTTCTATTGATTA 59.511 38.462 0.00 0.00 0.00 1.75
476 510 5.302059 TCGTCCGATTCTCCTTCTATTGATT 59.698 40.000 0.00 0.00 0.00 2.57
477 511 4.827835 TCGTCCGATTCTCCTTCTATTGAT 59.172 41.667 0.00 0.00 0.00 2.57
478 512 4.204799 TCGTCCGATTCTCCTTCTATTGA 58.795 43.478 0.00 0.00 0.00 2.57
479 513 4.569761 TCGTCCGATTCTCCTTCTATTG 57.430 45.455 0.00 0.00 0.00 1.90
480 514 6.887545 AGATATCGTCCGATTCTCCTTCTATT 59.112 38.462 7.57 0.00 36.17 1.73
481 515 6.419791 AGATATCGTCCGATTCTCCTTCTAT 58.580 40.000 7.57 0.00 36.17 1.98
482 516 5.806818 AGATATCGTCCGATTCTCCTTCTA 58.193 41.667 7.57 0.00 36.17 2.10
483 517 4.658063 AGATATCGTCCGATTCTCCTTCT 58.342 43.478 7.57 0.00 36.17 2.85
484 518 5.379732 AAGATATCGTCCGATTCTCCTTC 57.620 43.478 7.57 0.00 36.17 3.46
485 519 5.536916 AGAAAGATATCGTCCGATTCTCCTT 59.463 40.000 7.57 2.31 36.17 3.36
486 520 5.074115 AGAAAGATATCGTCCGATTCTCCT 58.926 41.667 7.57 8.39 36.17 3.69
487 521 5.379732 AGAAAGATATCGTCCGATTCTCC 57.620 43.478 7.57 6.75 36.17 3.71
488 522 5.083389 CGAGAAAGATATCGTCCGATTCTC 58.917 45.833 7.57 12.30 37.75 2.87
489 523 4.755629 TCGAGAAAGATATCGTCCGATTCT 59.244 41.667 7.57 4.98 40.97 2.40
490 524 5.032100 TCGAGAAAGATATCGTCCGATTC 57.968 43.478 7.57 5.80 40.97 2.52
491 525 5.434352 TTCGAGAAAGATATCGTCCGATT 57.566 39.130 7.57 0.00 40.97 3.34
492 526 5.213675 GTTTCGAGAAAGATATCGTCCGAT 58.786 41.667 7.41 7.41 40.97 4.18
493 527 4.095334 TGTTTCGAGAAAGATATCGTCCGA 59.905 41.667 13.61 13.61 40.97 4.55
494 528 4.348656 TGTTTCGAGAAAGATATCGTCCG 58.651 43.478 0.00 5.76 40.97 4.79
495 529 6.090358 TGTTTGTTTCGAGAAAGATATCGTCC 59.910 38.462 0.00 0.00 40.97 4.79
496 530 7.045725 TGTTTGTTTCGAGAAAGATATCGTC 57.954 36.000 0.00 0.00 40.97 4.20
497 531 7.416154 TTGTTTGTTTCGAGAAAGATATCGT 57.584 32.000 0.00 0.00 40.97 3.73
498 532 8.708075 TTTTGTTTGTTTCGAGAAAGATATCG 57.292 30.769 0.00 0.00 41.51 2.92
502 536 8.980143 TTCTTTTTGTTTGTTTCGAGAAAGAT 57.020 26.923 0.00 0.00 33.48 2.40
503 537 8.804688 TTTCTTTTTGTTTGTTTCGAGAAAGA 57.195 26.923 0.00 0.00 32.05 2.52
504 538 9.856803 TTTTTCTTTTTGTTTGTTTCGAGAAAG 57.143 25.926 0.00 0.00 34.54 2.62
505 539 9.856803 CTTTTTCTTTTTGTTTGTTTCGAGAAA 57.143 25.926 0.00 0.00 32.05 2.52
506 540 9.250624 TCTTTTTCTTTTTGTTTGTTTCGAGAA 57.749 25.926 0.00 0.00 0.00 2.87
507 541 8.804688 TCTTTTTCTTTTTGTTTGTTTCGAGA 57.195 26.923 0.00 0.00 0.00 4.04
508 542 9.856803 TTTCTTTTTCTTTTTGTTTGTTTCGAG 57.143 25.926 0.00 0.00 0.00 4.04
509 543 9.856803 CTTTCTTTTTCTTTTTGTTTGTTTCGA 57.143 25.926 0.00 0.00 0.00 3.71
510 544 9.856803 TCTTTCTTTTTCTTTTTGTTTGTTTCG 57.143 25.926 0.00 0.00 0.00 3.46
530 564 9.293404 TGATCATGATTTCAGTTTTCTCTTTCT 57.707 29.630 10.14 0.00 0.00 2.52
531 565 9.903682 TTGATCATGATTTCAGTTTTCTCTTTC 57.096 29.630 10.14 0.00 0.00 2.62
532 566 9.688592 GTTGATCATGATTTCAGTTTTCTCTTT 57.311 29.630 10.14 0.00 0.00 2.52
533 567 9.075678 AGTTGATCATGATTTCAGTTTTCTCTT 57.924 29.630 10.14 0.00 0.00 2.85
534 568 8.632906 AGTTGATCATGATTTCAGTTTTCTCT 57.367 30.769 10.14 0.00 0.00 3.10
535 569 9.985318 CTAGTTGATCATGATTTCAGTTTTCTC 57.015 33.333 10.14 0.00 0.00 2.87
536 570 8.457261 GCTAGTTGATCATGATTTCAGTTTTCT 58.543 33.333 10.14 3.40 0.00 2.52
537 571 7.699812 GGCTAGTTGATCATGATTTCAGTTTTC 59.300 37.037 10.14 0.00 0.00 2.29
538 572 7.363268 GGGCTAGTTGATCATGATTTCAGTTTT 60.363 37.037 10.14 0.00 0.00 2.43
539 573 6.096001 GGGCTAGTTGATCATGATTTCAGTTT 59.904 38.462 10.14 0.00 0.00 2.66
540 574 5.591877 GGGCTAGTTGATCATGATTTCAGTT 59.408 40.000 10.14 0.50 0.00 3.16
541 575 5.104193 AGGGCTAGTTGATCATGATTTCAGT 60.104 40.000 10.14 2.83 0.00 3.41
542 576 5.374921 AGGGCTAGTTGATCATGATTTCAG 58.625 41.667 10.14 4.77 0.00 3.02
543 577 5.131642 AGAGGGCTAGTTGATCATGATTTCA 59.868 40.000 10.14 1.86 0.00 2.69
544 578 5.619220 AGAGGGCTAGTTGATCATGATTTC 58.381 41.667 10.14 0.00 0.00 2.17
545 579 5.619220 GAGAGGGCTAGTTGATCATGATTT 58.381 41.667 10.14 0.00 0.00 2.17
546 580 4.262377 CGAGAGGGCTAGTTGATCATGATT 60.262 45.833 10.14 0.00 0.00 2.57
547 581 3.257873 CGAGAGGGCTAGTTGATCATGAT 59.742 47.826 8.25 8.25 0.00 2.45
548 582 2.625314 CGAGAGGGCTAGTTGATCATGA 59.375 50.000 0.00 0.00 0.00 3.07
549 583 2.625314 TCGAGAGGGCTAGTTGATCATG 59.375 50.000 0.00 0.00 0.00 3.07
550 584 2.890311 CTCGAGAGGGCTAGTTGATCAT 59.110 50.000 6.58 0.00 0.00 2.45
551 585 2.302260 CTCGAGAGGGCTAGTTGATCA 58.698 52.381 6.58 0.00 0.00 2.92
562 596 2.896443 GGTTGGAGCTCGAGAGGG 59.104 66.667 18.75 0.00 0.00 4.30
563 597 1.595993 TTCGGTTGGAGCTCGAGAGG 61.596 60.000 18.75 0.00 34.33 3.69
564 598 0.456995 GTTCGGTTGGAGCTCGAGAG 60.457 60.000 18.75 0.00 34.33 3.20
565 599 1.585006 GTTCGGTTGGAGCTCGAGA 59.415 57.895 18.75 0.00 34.33 4.04
566 600 1.801913 CGTTCGGTTGGAGCTCGAG 60.802 63.158 8.45 8.45 34.33 4.04
567 601 1.798234 TTCGTTCGGTTGGAGCTCGA 61.798 55.000 7.83 0.00 0.00 4.04
568 602 1.372499 TTCGTTCGGTTGGAGCTCG 60.372 57.895 7.83 0.00 0.00 5.03
569 603 1.289800 GGTTCGTTCGGTTGGAGCTC 61.290 60.000 4.71 4.71 0.00 4.09
570 604 1.301479 GGTTCGTTCGGTTGGAGCT 60.301 57.895 0.00 0.00 0.00 4.09
599 633 1.295357 TTTGCCAGGTATGCACGTCG 61.295 55.000 0.00 0.00 38.72 5.12
626 660 7.041721 CACTAATAACTGTCATGCTGTTCCTA 58.958 38.462 12.93 7.56 39.46 2.94
631 665 3.618594 CGCACTAATAACTGTCATGCTGT 59.381 43.478 0.00 0.00 0.00 4.40
639 673 7.064253 GTCCTCATAAAACGCACTAATAACTGT 59.936 37.037 0.00 0.00 0.00 3.55
661 716 1.350310 AAAACTGTCACCCCCGTCCT 61.350 55.000 0.00 0.00 0.00 3.85
664 719 1.770061 TCTAAAAACTGTCACCCCCGT 59.230 47.619 0.00 0.00 0.00 5.28
666 721 4.579454 GTTTCTAAAAACTGTCACCCCC 57.421 45.455 0.00 0.00 41.32 5.40
705 783 7.662897 ACAACAACAACAAAACCTCTTAAAGA 58.337 30.769 0.00 0.00 0.00 2.52
763 1859 1.070786 GAACCACCTCTGAACCGCA 59.929 57.895 0.00 0.00 0.00 5.69
765 1861 2.027625 GCGAACCACCTCTGAACCG 61.028 63.158 0.00 0.00 0.00 4.44
816 1914 5.067954 AGGTTGTTTTACGGAAATACTGCT 58.932 37.500 0.00 0.00 0.00 4.24
1128 2227 2.361119 GGTGTGGAAAAGACCCTGAAAC 59.639 50.000 0.00 0.00 36.15 2.78
1722 2827 3.181478 ACGAGGAGAATTTCGGATACACC 60.181 47.826 2.63 0.00 40.93 4.16
1785 2890 2.303022 GACAATCAGTGGGTTCTCTGGA 59.697 50.000 0.00 0.00 35.76 3.86
1803 2908 2.669133 CCGGGCATTCTCCCAGACA 61.669 63.158 0.00 0.00 46.92 3.41
1806 2911 2.190578 GACCGGGCATTCTCCCAG 59.809 66.667 0.00 0.00 46.92 4.45
1911 3016 2.473816 TGTGACAGCTTGAACTTCTCG 58.526 47.619 0.00 0.00 0.00 4.04
1938 3043 0.542702 CAACCCCAAGCACCTCCATT 60.543 55.000 0.00 0.00 0.00 3.16
1956 3061 4.357947 GCGCGAGTGTCCACCTCA 62.358 66.667 12.10 0.00 0.00 3.86
1971 3076 3.869272 GCTGCGATCACCCTTGCG 61.869 66.667 0.00 0.00 0.00 4.85
2040 3145 3.992943 TGGGGGTCACACATAAAGTAG 57.007 47.619 0.00 0.00 0.00 2.57
2109 3214 4.319622 GCAAGATGCTGTGATATCTTCTGC 60.320 45.833 16.67 16.67 40.62 4.26
2124 3229 1.817099 CGGTGGAGGAGCAAGATGC 60.817 63.158 0.00 0.00 45.46 3.91
2298 3403 4.625028 TGATTGAAGCAGATATCACCTCG 58.375 43.478 5.32 0.00 0.00 4.63
2355 3460 0.555769 ACTGGCTGAACCCAAGGAAA 59.444 50.000 0.00 0.00 37.83 3.13
2409 3514 7.420800 CAACAAGCTTCAAATCTTTACTCTGT 58.579 34.615 0.00 0.00 0.00 3.41
2475 3580 3.744660 CCATGGCTGGTTATAGAAGTCC 58.255 50.000 0.00 0.00 37.79 3.85
2723 3831 8.977412 TGAAATTATACTGATACAGGACAGACA 58.023 33.333 0.00 0.00 37.54 3.41
3094 4205 5.930135 AGACACACCAGTTATCATAATCCC 58.070 41.667 0.00 0.00 0.00 3.85
3130 4242 6.555463 AGAACCCACGGATAAAAGAGAATA 57.445 37.500 0.00 0.00 0.00 1.75
3195 4315 2.617250 TGCAAAAGCACTCATAAGCG 57.383 45.000 0.00 0.00 35.48 4.68
3331 4451 9.832445 AAGACAAGACGTTATTACATCCAATAT 57.168 29.630 0.00 0.00 0.00 1.28
3332 4452 9.093970 CAAGACAAGACGTTATTACATCCAATA 57.906 33.333 0.00 0.00 0.00 1.90
3333 4453 7.606456 ACAAGACAAGACGTTATTACATCCAAT 59.394 33.333 0.00 0.00 0.00 3.16
3334 4454 6.932400 ACAAGACAAGACGTTATTACATCCAA 59.068 34.615 0.00 0.00 0.00 3.53
3335 4455 6.460781 ACAAGACAAGACGTTATTACATCCA 58.539 36.000 0.00 0.00 0.00 3.41
3336 4456 6.963049 ACAAGACAAGACGTTATTACATCC 57.037 37.500 0.00 0.00 0.00 3.51
3353 4473 4.583489 TCCCTCCGTCTGATAATACAAGAC 59.417 45.833 0.00 0.00 0.00 3.01
3355 4475 4.585162 ACTCCCTCCGTCTGATAATACAAG 59.415 45.833 0.00 0.00 0.00 3.16
3358 4478 5.315348 AGTACTCCCTCCGTCTGATAATAC 58.685 45.833 0.00 0.00 0.00 1.89
3360 4480 4.456662 AGTACTCCCTCCGTCTGATAAT 57.543 45.455 0.00 0.00 0.00 1.28
3361 4481 3.947612 AGTACTCCCTCCGTCTGATAA 57.052 47.619 0.00 0.00 0.00 1.75
3362 4482 3.947612 AAGTACTCCCTCCGTCTGATA 57.052 47.619 0.00 0.00 0.00 2.15
3365 4485 3.679824 AAAAAGTACTCCCTCCGTCTG 57.320 47.619 0.00 0.00 0.00 3.51
3386 4506 4.400884 ACAAGTAACTGGTTGCAACATCAA 59.599 37.500 29.55 11.85 0.00 2.57
3396 4516 5.761726 GCCTAGTTTGTACAAGTAACTGGTT 59.238 40.000 17.76 0.00 34.26 3.67
3400 4520 4.596212 AGGGCCTAGTTTGTACAAGTAACT 59.404 41.667 2.82 14.22 36.23 2.24
3412 4532 2.091555 TGAACCAAACAGGGCCTAGTTT 60.092 45.455 21.02 21.02 43.89 2.66
3413 4533 1.497286 TGAACCAAACAGGGCCTAGTT 59.503 47.619 5.28 10.69 43.89 2.24
3414 4534 1.145571 TGAACCAAACAGGGCCTAGT 58.854 50.000 5.28 3.98 43.89 2.57
3415 4535 2.514458 ATGAACCAAACAGGGCCTAG 57.486 50.000 5.28 3.22 43.89 3.02
3416 4536 3.332485 ACTTATGAACCAAACAGGGCCTA 59.668 43.478 5.28 0.00 43.89 3.93
3417 4537 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
3418 4538 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
3419 4539 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
3420 4540 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
3421 4541 7.230712 AGTTTTAGGACTTATGAACCAAACAGG 59.769 37.037 0.00 0.00 45.67 4.00
3422 4542 8.166422 AGTTTTAGGACTTATGAACCAAACAG 57.834 34.615 0.00 0.00 0.00 3.16
3423 4543 8.528044 AAGTTTTAGGACTTATGAACCAAACA 57.472 30.769 0.00 0.00 38.06 2.83
3424 4544 9.811995 AAAAGTTTTAGGACTTATGAACCAAAC 57.188 29.630 0.00 0.00 38.86 2.93
3449 4569 9.629878 TTGTGACTTATAAGTTGGGACTAAAAA 57.370 29.630 18.96 3.18 39.88 1.94
3450 4570 9.280174 CTTGTGACTTATAAGTTGGGACTAAAA 57.720 33.333 18.96 4.98 39.88 1.52
3451 4571 8.434392 ACTTGTGACTTATAAGTTGGGACTAAA 58.566 33.333 18.96 5.70 37.44 1.85
3452 4572 7.970102 ACTTGTGACTTATAAGTTGGGACTAA 58.030 34.615 18.96 7.57 37.44 2.24
3453 4573 7.310237 GGACTTGTGACTTATAAGTTGGGACTA 60.310 40.741 18.96 9.68 40.34 2.59
3454 4574 6.435292 ACTTGTGACTTATAAGTTGGGACT 57.565 37.500 18.96 0.00 37.44 3.85
3455 4575 5.642491 GGACTTGTGACTTATAAGTTGGGAC 59.358 44.000 18.96 13.23 40.34 4.46
3456 4576 5.280317 GGGACTTGTGACTTATAAGTTGGGA 60.280 44.000 18.96 6.15 40.34 4.37
3457 4577 4.941873 GGGACTTGTGACTTATAAGTTGGG 59.058 45.833 18.96 10.37 40.34 4.12
3458 4578 5.805728 AGGGACTTGTGACTTATAAGTTGG 58.194 41.667 18.96 10.07 40.34 3.77
3459 4579 6.817140 GGTAGGGACTTGTGACTTATAAGTTG 59.183 42.308 18.96 9.81 40.34 3.16
3460 4580 6.729569 AGGTAGGGACTTGTGACTTATAAGTT 59.270 38.462 18.96 2.29 40.34 2.66
3461 4581 6.154706 CAGGTAGGGACTTGTGACTTATAAGT 59.845 42.308 18.05 18.05 42.57 2.24
3462 4582 6.154706 ACAGGTAGGGACTTGTGACTTATAAG 59.845 42.308 11.05 11.05 43.72 1.73
3463 4583 6.021030 ACAGGTAGGGACTTGTGACTTATAA 58.979 40.000 0.00 0.00 43.72 0.98
3464 4584 5.586877 ACAGGTAGGGACTTGTGACTTATA 58.413 41.667 0.00 0.00 43.72 0.98
3465 4585 4.426704 ACAGGTAGGGACTTGTGACTTAT 58.573 43.478 0.00 0.00 43.72 1.73
3466 4586 3.853207 ACAGGTAGGGACTTGTGACTTA 58.147 45.455 0.00 0.00 43.72 2.24
3467 4587 2.690840 ACAGGTAGGGACTTGTGACTT 58.309 47.619 0.00 0.00 43.72 3.01
3468 4588 2.400467 ACAGGTAGGGACTTGTGACT 57.600 50.000 0.00 0.00 43.72 3.41
3469 4589 3.139077 CAAACAGGTAGGGACTTGTGAC 58.861 50.000 0.00 0.00 44.55 3.67
3470 4590 2.105821 CCAAACAGGTAGGGACTTGTGA 59.894 50.000 0.00 0.00 44.55 3.58
3471 4591 2.504367 CCAAACAGGTAGGGACTTGTG 58.496 52.381 0.00 0.00 44.55 3.33
3483 4603 2.938956 AGTCTCAGGAACCAAACAGG 57.061 50.000 0.00 0.00 45.67 4.00
3484 4604 7.162082 ACTTATAAGTCTCAGGAACCAAACAG 58.838 38.462 12.50 0.00 32.86 3.16
3485 4605 7.074653 ACTTATAAGTCTCAGGAACCAAACA 57.925 36.000 12.50 0.00 32.86 2.83
3564 4684 8.058847 AGTAGGCATTTGGGACTTATGAAATAA 58.941 33.333 0.00 0.00 36.20 1.40
3565 4685 7.582719 AGTAGGCATTTGGGACTTATGAAATA 58.417 34.615 0.00 0.00 0.00 1.40
3566 4686 6.435164 AGTAGGCATTTGGGACTTATGAAAT 58.565 36.000 0.00 0.00 0.00 2.17
3567 4687 5.826643 AGTAGGCATTTGGGACTTATGAAA 58.173 37.500 0.00 0.00 0.00 2.69
3568 4688 5.450818 AGTAGGCATTTGGGACTTATGAA 57.549 39.130 0.00 0.00 0.00 2.57
3569 4689 5.450818 AAGTAGGCATTTGGGACTTATGA 57.549 39.130 0.00 0.00 0.00 2.15
3570 4690 7.339466 ACTTAAAGTAGGCATTTGGGACTTATG 59.661 37.037 0.00 0.00 30.34 1.90
3571 4691 7.410991 ACTTAAAGTAGGCATTTGGGACTTAT 58.589 34.615 0.00 0.00 30.34 1.73
3572 4692 6.786122 ACTTAAAGTAGGCATTTGGGACTTA 58.214 36.000 0.00 0.00 30.34 2.24
3573 4693 5.641155 ACTTAAAGTAGGCATTTGGGACTT 58.359 37.500 0.00 0.00 31.79 3.01
3574 4694 5.014228 AGACTTAAAGTAGGCATTTGGGACT 59.986 40.000 0.00 0.00 0.00 3.85
3575 4695 5.254115 AGACTTAAAGTAGGCATTTGGGAC 58.746 41.667 0.00 0.00 0.00 4.46
3576 4696 5.250774 AGAGACTTAAAGTAGGCATTTGGGA 59.749 40.000 0.00 0.00 0.00 4.37
3577 4697 5.501156 AGAGACTTAAAGTAGGCATTTGGG 58.499 41.667 0.00 0.00 0.00 4.12
3578 4698 9.832445 TTATAGAGACTTAAAGTAGGCATTTGG 57.168 33.333 0.00 0.00 0.00 3.28
3582 4702 8.862085 GGACTTATAGAGACTTAAAGTAGGCAT 58.138 37.037 0.00 0.00 30.83 4.40
3583 4703 7.287235 GGGACTTATAGAGACTTAAAGTAGGCA 59.713 40.741 0.00 0.00 30.83 4.75
3584 4704 7.506599 AGGGACTTATAGAGACTTAAAGTAGGC 59.493 40.741 0.00 0.00 27.25 3.93
3585 4705 8.999905 AGGGACTTATAGAGACTTAAAGTAGG 57.000 38.462 0.00 0.00 27.25 3.18
3586 4706 9.070179 GGAGGGACTTATAGAGACTTAAAGTAG 57.930 40.741 0.00 0.00 41.55 2.57
3587 4707 8.789782 AGGAGGGACTTATAGAGACTTAAAGTA 58.210 37.037 0.00 0.00 41.55 2.24
3588 4708 7.562088 CAGGAGGGACTTATAGAGACTTAAAGT 59.438 40.741 0.00 0.00 41.55 2.66
3589 4709 7.562088 ACAGGAGGGACTTATAGAGACTTAAAG 59.438 40.741 0.00 0.00 41.55 1.85
3590 4710 7.420029 ACAGGAGGGACTTATAGAGACTTAAA 58.580 38.462 0.00 0.00 41.55 1.52
3591 4711 6.982899 ACAGGAGGGACTTATAGAGACTTAA 58.017 40.000 0.00 0.00 41.55 1.85
3592 4712 6.593759 ACAGGAGGGACTTATAGAGACTTA 57.406 41.667 0.00 0.00 41.55 2.24
3593 4713 5.475398 ACAGGAGGGACTTATAGAGACTT 57.525 43.478 0.00 0.00 41.55 3.01
3594 4714 5.475398 AACAGGAGGGACTTATAGAGACT 57.525 43.478 0.00 0.00 41.55 3.24
3595 4715 5.163395 CCAAACAGGAGGGACTTATAGAGAC 60.163 48.000 0.00 0.00 41.55 3.36
3596 4716 4.962995 CCAAACAGGAGGGACTTATAGAGA 59.037 45.833 0.00 0.00 41.55 3.10
3597 4717 4.717280 ACCAAACAGGAGGGACTTATAGAG 59.283 45.833 0.00 0.00 41.55 2.43
3598 4718 4.695606 ACCAAACAGGAGGGACTTATAGA 58.304 43.478 0.00 0.00 41.55 1.98
3599 4719 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
3600 4720 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
3601 4721 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
3602 4722 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
3603 4723 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
3605 4725 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
3606 4726 3.913799 TCATCTAAACCAAACAGGAGGGA 59.086 43.478 0.00 0.00 41.22 4.20
3607 4727 4.301072 TCATCTAAACCAAACAGGAGGG 57.699 45.455 0.00 0.00 41.22 4.30
3608 4728 6.013842 GTTTCATCTAAACCAAACAGGAGG 57.986 41.667 0.00 0.00 41.44 4.30
3643 4763 6.020389 ACTTATTGGCTTAGGGGCTTAAAAA 58.980 36.000 0.00 0.00 41.48 1.94
3644 4764 5.585894 ACTTATTGGCTTAGGGGCTTAAAA 58.414 37.500 0.00 0.00 41.48 1.52
3645 4765 5.198207 GACTTATTGGCTTAGGGGCTTAAA 58.802 41.667 0.00 0.00 41.48 1.52
3646 4766 4.385977 GGACTTATTGGCTTAGGGGCTTAA 60.386 45.833 0.00 0.00 41.48 1.85
3647 4767 3.137728 GGACTTATTGGCTTAGGGGCTTA 59.862 47.826 0.00 0.00 41.48 3.09
3648 4768 2.091830 GGACTTATTGGCTTAGGGGCTT 60.092 50.000 0.00 0.00 41.48 4.35
3649 4769 1.495148 GGACTTATTGGCTTAGGGGCT 59.505 52.381 0.00 0.00 41.48 5.19
3650 4770 1.478837 GGGACTTATTGGCTTAGGGGC 60.479 57.143 0.00 0.00 41.27 5.80
3651 4771 1.145119 GGGGACTTATTGGCTTAGGGG 59.855 57.143 0.00 0.00 0.00 4.79
3652 4772 1.202770 CGGGGACTTATTGGCTTAGGG 60.203 57.143 0.00 0.00 0.00 3.53
3653 4773 1.202770 CCGGGGACTTATTGGCTTAGG 60.203 57.143 0.00 0.00 0.00 2.69
3654 4774 1.766496 TCCGGGGACTTATTGGCTTAG 59.234 52.381 0.00 0.00 0.00 2.18
3655 4775 1.882308 TCCGGGGACTTATTGGCTTA 58.118 50.000 0.00 0.00 0.00 3.09
3656 4776 0.996583 TTCCGGGGACTTATTGGCTT 59.003 50.000 0.00 0.00 0.00 4.35
3657 4777 0.996583 TTTCCGGGGACTTATTGGCT 59.003 50.000 0.00 0.00 0.00 4.75
3658 4778 1.100510 GTTTCCGGGGACTTATTGGC 58.899 55.000 0.00 0.00 0.00 4.52
3659 4779 2.500392 TGTTTCCGGGGACTTATTGG 57.500 50.000 0.00 0.00 0.00 3.16
3660 4780 4.334481 GTGTATGTTTCCGGGGACTTATTG 59.666 45.833 0.00 0.00 0.00 1.90
3661 4781 4.520179 GTGTATGTTTCCGGGGACTTATT 58.480 43.478 0.00 0.00 0.00 1.40
3662 4782 3.118149 GGTGTATGTTTCCGGGGACTTAT 60.118 47.826 0.00 0.00 0.00 1.73
3663 4783 2.236893 GGTGTATGTTTCCGGGGACTTA 59.763 50.000 0.00 0.63 0.00 2.24
3664 4784 1.003928 GGTGTATGTTTCCGGGGACTT 59.996 52.381 0.00 1.65 0.00 3.01
3665 4785 0.616891 GGTGTATGTTTCCGGGGACT 59.383 55.000 0.00 0.00 0.00 3.85
3666 4786 0.393402 GGGTGTATGTTTCCGGGGAC 60.393 60.000 0.00 0.68 0.00 4.46
3667 4787 1.992844 GGGTGTATGTTTCCGGGGA 59.007 57.895 0.00 0.00 0.00 4.81
3668 4788 4.649845 GGGTGTATGTTTCCGGGG 57.350 61.111 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.