Multiple sequence alignment - TraesCS2D01G279400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G279400 chr2D 100.000 8700 0 0 1 8700 351048976 351057675 0.000000e+00 16066
1 TraesCS2D01G279400 chr2D 99.650 572 2 0 4227 4798 106332127 106332698 0.000000e+00 1046
2 TraesCS2D01G279400 chr2D 78.826 954 174 10 8 935 480588402 480587451 1.240000e-172 617
3 TraesCS2D01G279400 chr2D 97.701 174 3 1 6271 6443 78903197 78903370 1.840000e-76 298
4 TraesCS2D01G279400 chr2D 97.633 169 4 0 6269 6437 587279416 587279248 3.070000e-74 291
5 TraesCS2D01G279400 chr2A 96.972 2279 57 6 6433 8700 468531647 468533924 0.000000e+00 3816
6 TraesCS2D01G279400 chr2A 95.375 2184 67 13 978 3152 468526170 468528328 0.000000e+00 3443
7 TraesCS2D01G279400 chr2A 96.361 1484 43 10 4797 6272 468530168 468531648 0.000000e+00 2431
8 TraesCS2D01G279400 chr2A 98.132 589 10 1 3142 3729 468528975 468529563 0.000000e+00 1026
9 TraesCS2D01G279400 chr2A 96.267 509 14 2 3727 4230 468529679 468530187 0.000000e+00 830
10 TraesCS2D01G279400 chr2B 95.078 1605 52 12 1017 2618 417073110 417074690 0.000000e+00 2501
11 TraesCS2D01G279400 chr2B 96.429 1288 35 4 7419 8700 417079406 417080688 0.000000e+00 2113
12 TraesCS2D01G279400 chr2B 96.990 897 25 2 2834 3729 417075261 417076156 0.000000e+00 1506
13 TraesCS2D01G279400 chr2B 97.477 872 18 4 4797 5667 417076764 417077632 0.000000e+00 1485
14 TraesCS2D01G279400 chr2B 97.397 730 18 1 6605 7333 417078681 417079410 0.000000e+00 1242
15 TraesCS2D01G279400 chr2B 96.311 515 18 1 5759 6272 417077957 417078471 0.000000e+00 845
16 TraesCS2D01G279400 chr2B 95.712 513 14 3 3727 4231 417076272 417076784 0.000000e+00 819
17 TraesCS2D01G279400 chr2B 96.067 178 2 3 6433 6610 417078470 417078642 1.430000e-72 285
18 TraesCS2D01G279400 chr2B 99.231 130 1 0 2619 2748 417075125 417075254 1.460000e-57 235
19 TraesCS2D01G279400 chr2B 96.774 124 1 3 5656 5776 417077820 417077943 4.120000e-48 204
20 TraesCS2D01G279400 chr6A 99.825 572 1 0 4227 4798 410902084 410901513 0.000000e+00 1051
21 TraesCS2D01G279400 chr6A 83.117 154 24 2 8 160 563219753 563219905 1.180000e-28 139
22 TraesCS2D01G279400 chr3A 99.825 572 1 0 4227 4798 91016438 91017009 0.000000e+00 1051
23 TraesCS2D01G279400 chrUn 99.651 573 2 0 4227 4799 70286410 70285838 0.000000e+00 1048
24 TraesCS2D01G279400 chrUn 78.176 866 163 14 26 869 170199261 170200122 5.980000e-146 529
25 TraesCS2D01G279400 chrUn 98.193 166 2 1 6270 6435 99637990 99638154 1.110000e-73 289
26 TraesCS2D01G279400 chrUn 76.716 408 75 9 100 489 62702935 62703340 8.850000e-50 209
27 TraesCS2D01G279400 chr5A 99.651 573 2 0 4227 4799 602838624 602839196 0.000000e+00 1048
28 TraesCS2D01G279400 chr5A 99.650 572 2 0 4227 4798 23608406 23608977 0.000000e+00 1046
29 TraesCS2D01G279400 chr5A 77.273 946 186 17 8 942 275112079 275111152 5.980000e-146 529
30 TraesCS2D01G279400 chr5A 77.211 961 179 31 8 942 309772385 309773331 7.740000e-145 525
31 TraesCS2D01G279400 chr7A 99.650 572 2 0 4227 4798 91513309 91512738 0.000000e+00 1046
32 TraesCS2D01G279400 chr1D 99.650 572 2 0 4227 4798 223524002 223524573 0.000000e+00 1046
33 TraesCS2D01G279400 chr1D 80.053 752 130 13 198 942 407614074 407614812 2.760000e-149 540
34 TraesCS2D01G279400 chr1D 77.865 890 145 27 8 875 479125260 479126119 1.010000e-138 505
35 TraesCS2D01G279400 chr1D 78.851 766 145 11 99 849 384467742 384468505 1.300000e-137 501
36 TraesCS2D01G279400 chr1D 80.118 679 117 5 111 772 445761721 445761044 2.820000e-134 490
37 TraesCS2D01G279400 chr1D 77.175 885 172 16 11 878 488635262 488636133 1.020000e-133 488
38 TraesCS2D01G279400 chr1D 76.205 954 170 24 8 942 479350209 479349294 1.330000e-122 451
39 TraesCS2D01G279400 chr1D 76.177 722 121 29 9 689 258413799 258414510 5.030000e-87 333
40 TraesCS2D01G279400 chr1D 99.390 164 1 0 6271 6434 396035330 396035493 1.840000e-76 298
41 TraesCS2D01G279400 chr1D 79.043 439 85 7 335 770 427009658 427009224 2.380000e-75 294
42 TraesCS2D01G279400 chr1D 81.343 134 16 2 196 326 109785505 109785632 5.560000e-17 100
43 TraesCS2D01G279400 chr1A 99.650 572 2 0 4227 4798 396446263 396445692 0.000000e+00 1046
44 TraesCS2D01G279400 chr3B 80.136 881 149 16 8 869 418749838 418748965 1.230000e-177 634
45 TraesCS2D01G279400 chr5B 78.699 953 186 12 2 942 670250567 670251514 3.450000e-173 619
46 TraesCS2D01G279400 chr4D 78.975 937 158 23 5 922 47557678 47558594 3.470000e-168 603
47 TraesCS2D01G279400 chr4D 79.976 819 124 19 22 824 356880608 356879814 1.270000e-157 568
48 TraesCS2D01G279400 chr4D 78.049 943 157 30 9 940 486934225 486935128 4.590000e-152 549
49 TraesCS2D01G279400 chr4D 77.164 959 171 24 9 942 63813570 63814505 1.670000e-141 514
50 TraesCS2D01G279400 chr4D 77.868 863 142 21 8 849 315803027 315803861 2.820000e-134 490
51 TraesCS2D01G279400 chr4D 96.154 182 5 2 6268 6448 293550124 293550304 6.600000e-76 296
52 TraesCS2D01G279400 chr7B 79.455 881 150 18 9 869 476883312 476884181 5.810000e-166 595
53 TraesCS2D01G279400 chr7B 81.364 660 108 10 4 653 709518034 709518688 2.780000e-144 523
54 TraesCS2D01G279400 chr7B 98.780 164 2 0 6271 6434 664801022 664800859 8.540000e-75 292
55 TraesCS2D01G279400 chr7D 79.267 873 160 10 5 858 559270178 559271048 2.710000e-164 590
56 TraesCS2D01G279400 chr7D 76.715 962 171 28 2 942 538912349 538913278 3.650000e-133 486
57 TraesCS2D01G279400 chr3D 79.171 893 150 23 1 869 438615515 438614635 3.500000e-163 586
58 TraesCS2D01G279400 chr3D 98.830 171 2 0 6265 6435 53464815 53464985 1.100000e-78 305
59 TraesCS2D01G279400 chr3D 96.571 175 4 2 6270 6442 302228235 302228061 1.110000e-73 289
60 TraesCS2D01G279400 chr3D 98.182 165 3 0 6271 6435 379483466 379483302 1.110000e-73 289
61 TraesCS2D01G279400 chr3D 81.724 290 40 4 10 286 94029533 94029822 6.790000e-56 230
62 TraesCS2D01G279400 chr6D 78.563 877 147 27 5 868 388266699 388267547 2.760000e-149 540
63 TraesCS2D01G279400 chr6D 81.475 583 96 12 295 869 388320476 388321054 1.320000e-127 468
64 TraesCS2D01G279400 chr6D 83.077 130 21 1 5 134 335378346 335378474 5.520000e-22 117
65 TraesCS2D01G279400 chr5D 78.153 888 153 18 8 875 37646541 37645675 2.150000e-145 527
66 TraesCS2D01G279400 chr5D 78.017 837 144 25 8 825 408746271 408745456 2.820000e-134 490
67 TraesCS2D01G279400 chr1B 78.745 781 128 17 8 777 520789989 520789236 1.020000e-133 488
68 TraesCS2D01G279400 chr1B 77.074 868 158 29 12 869 7583534 7582698 6.150000e-126 462


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G279400 chr2D 351048976 351057675 8699 False 16066.0 16066 100.0000 1 8700 1 chr2D.!!$F3 8699
1 TraesCS2D01G279400 chr2D 106332127 106332698 571 False 1046.0 1046 99.6500 4227 4798 1 chr2D.!!$F2 571
2 TraesCS2D01G279400 chr2D 480587451 480588402 951 True 617.0 617 78.8260 8 935 1 chr2D.!!$R1 927
3 TraesCS2D01G279400 chr2A 468526170 468533924 7754 False 2309.2 3816 96.6214 978 8700 5 chr2A.!!$F1 7722
4 TraesCS2D01G279400 chr2B 417073110 417080688 7578 False 1123.5 2501 96.7466 1017 8700 10 chr2B.!!$F1 7683
5 TraesCS2D01G279400 chr6A 410901513 410902084 571 True 1051.0 1051 99.8250 4227 4798 1 chr6A.!!$R1 571
6 TraesCS2D01G279400 chr3A 91016438 91017009 571 False 1051.0 1051 99.8250 4227 4798 1 chr3A.!!$F1 571
7 TraesCS2D01G279400 chrUn 70285838 70286410 572 True 1048.0 1048 99.6510 4227 4799 1 chrUn.!!$R1 572
8 TraesCS2D01G279400 chrUn 170199261 170200122 861 False 529.0 529 78.1760 26 869 1 chrUn.!!$F3 843
9 TraesCS2D01G279400 chr5A 602838624 602839196 572 False 1048.0 1048 99.6510 4227 4799 1 chr5A.!!$F3 572
10 TraesCS2D01G279400 chr5A 23608406 23608977 571 False 1046.0 1046 99.6500 4227 4798 1 chr5A.!!$F1 571
11 TraesCS2D01G279400 chr5A 275111152 275112079 927 True 529.0 529 77.2730 8 942 1 chr5A.!!$R1 934
12 TraesCS2D01G279400 chr5A 309772385 309773331 946 False 525.0 525 77.2110 8 942 1 chr5A.!!$F2 934
13 TraesCS2D01G279400 chr7A 91512738 91513309 571 True 1046.0 1046 99.6500 4227 4798 1 chr7A.!!$R1 571
14 TraesCS2D01G279400 chr1D 223524002 223524573 571 False 1046.0 1046 99.6500 4227 4798 1 chr1D.!!$F2 571
15 TraesCS2D01G279400 chr1D 407614074 407614812 738 False 540.0 540 80.0530 198 942 1 chr1D.!!$F6 744
16 TraesCS2D01G279400 chr1D 479125260 479126119 859 False 505.0 505 77.8650 8 875 1 chr1D.!!$F7 867
17 TraesCS2D01G279400 chr1D 384467742 384468505 763 False 501.0 501 78.8510 99 849 1 chr1D.!!$F4 750
18 TraesCS2D01G279400 chr1D 445761044 445761721 677 True 490.0 490 80.1180 111 772 1 chr1D.!!$R2 661
19 TraesCS2D01G279400 chr1D 488635262 488636133 871 False 488.0 488 77.1750 11 878 1 chr1D.!!$F8 867
20 TraesCS2D01G279400 chr1D 479349294 479350209 915 True 451.0 451 76.2050 8 942 1 chr1D.!!$R3 934
21 TraesCS2D01G279400 chr1D 258413799 258414510 711 False 333.0 333 76.1770 9 689 1 chr1D.!!$F3 680
22 TraesCS2D01G279400 chr1A 396445692 396446263 571 True 1046.0 1046 99.6500 4227 4798 1 chr1A.!!$R1 571
23 TraesCS2D01G279400 chr3B 418748965 418749838 873 True 634.0 634 80.1360 8 869 1 chr3B.!!$R1 861
24 TraesCS2D01G279400 chr5B 670250567 670251514 947 False 619.0 619 78.6990 2 942 1 chr5B.!!$F1 940
25 TraesCS2D01G279400 chr4D 47557678 47558594 916 False 603.0 603 78.9750 5 922 1 chr4D.!!$F1 917
26 TraesCS2D01G279400 chr4D 356879814 356880608 794 True 568.0 568 79.9760 22 824 1 chr4D.!!$R1 802
27 TraesCS2D01G279400 chr4D 486934225 486935128 903 False 549.0 549 78.0490 9 940 1 chr4D.!!$F5 931
28 TraesCS2D01G279400 chr4D 63813570 63814505 935 False 514.0 514 77.1640 9 942 1 chr4D.!!$F2 933
29 TraesCS2D01G279400 chr4D 315803027 315803861 834 False 490.0 490 77.8680 8 849 1 chr4D.!!$F4 841
30 TraesCS2D01G279400 chr7B 476883312 476884181 869 False 595.0 595 79.4550 9 869 1 chr7B.!!$F1 860
31 TraesCS2D01G279400 chr7B 709518034 709518688 654 False 523.0 523 81.3640 4 653 1 chr7B.!!$F2 649
32 TraesCS2D01G279400 chr7D 559270178 559271048 870 False 590.0 590 79.2670 5 858 1 chr7D.!!$F2 853
33 TraesCS2D01G279400 chr7D 538912349 538913278 929 False 486.0 486 76.7150 2 942 1 chr7D.!!$F1 940
34 TraesCS2D01G279400 chr3D 438614635 438615515 880 True 586.0 586 79.1710 1 869 1 chr3D.!!$R3 868
35 TraesCS2D01G279400 chr6D 388266699 388267547 848 False 540.0 540 78.5630 5 868 1 chr6D.!!$F2 863
36 TraesCS2D01G279400 chr6D 388320476 388321054 578 False 468.0 468 81.4750 295 869 1 chr6D.!!$F3 574
37 TraesCS2D01G279400 chr5D 37645675 37646541 866 True 527.0 527 78.1530 8 875 1 chr5D.!!$R1 867
38 TraesCS2D01G279400 chr5D 408745456 408746271 815 True 490.0 490 78.0170 8 825 1 chr5D.!!$R2 817
39 TraesCS2D01G279400 chr1B 520789236 520789989 753 True 488.0 488 78.7450 8 777 1 chr1B.!!$R2 769
40 TraesCS2D01G279400 chr1B 7582698 7583534 836 True 462.0 462 77.0740 12 869 1 chr1B.!!$R1 857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 769 0.389426 GGTGCCATACAGACGAACGT 60.389 55.000 0.00 0.0 0.00 3.99 F
1086 1210 0.174845 GATGACGACCGTTGGATGGA 59.825 55.000 0.00 0.0 0.00 3.41 F
1983 2111 0.319555 TGCCAAGTCGTAGCACTGTC 60.320 55.000 0.00 0.0 0.00 3.51 F
3764 5103 3.391296 ACCACTCTGAGCTTTTAACTGGA 59.609 43.478 12.07 0.0 0.00 3.86 F
4111 5457 1.622312 ACTCTTTACCTCCGGTGAACC 59.378 52.381 4.76 0.0 36.19 3.62 F
5397 6747 1.545428 CCTGCTAAACACCTCAAGCCA 60.545 52.381 0.00 0.0 33.99 4.75 F
6902 8534 0.740737 CAATCCGCAATTCAGGGACC 59.259 55.000 0.00 0.0 31.52 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2092 0.319555 GACAGTGCTACGACTTGGCA 60.320 55.000 0.00 0.00 0.00 4.92 R
2017 2145 2.202797 CCAGCGGGATCGTGTCTG 60.203 66.667 0.00 0.00 38.89 3.51 R
3850 5196 1.074405 ACCAGAGATTGAAGCTGCCAA 59.926 47.619 0.00 4.54 0.00 4.52 R
5093 6443 3.068307 CAGGGGTATGGAAGAGTAGTTCG 59.932 52.174 0.00 0.00 0.00 3.95 R
5813 7400 3.012518 ACAACTGTGAGGCATGAATAGC 58.987 45.455 0.00 0.00 0.00 2.97 R
7354 8990 0.109342 AGAAGGTCAAGTGGCACCAG 59.891 55.000 15.27 7.33 34.80 4.00 R
7762 9406 1.134877 TCTGCTCATCTCTGCTTTCCG 60.135 52.381 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 125 4.155733 CATGGCCGCCACGACCTA 62.156 66.667 16.16 0.00 35.80 3.08
392 447 1.900351 CCGACCCTGATCTGCTTGA 59.100 57.895 0.00 0.00 0.00 3.02
461 533 2.125512 CCGTGGAAAGGCTCTCCG 60.126 66.667 1.73 0.00 35.55 4.63
464 536 1.446272 GTGGAAAGGCTCTCCGACG 60.446 63.158 1.73 0.00 35.55 5.12
507 581 2.877691 GGATGCGGTGCAAGGAAC 59.122 61.111 0.00 0.00 43.62 3.62
655 753 1.723870 CGAGCCTGCTTAATGGTGC 59.276 57.895 0.00 0.00 0.00 5.01
670 769 0.389426 GGTGCCATACAGACGAACGT 60.389 55.000 0.00 0.00 0.00 3.99
853 974 2.282180 AATGTGGAGCGGCCGTTT 60.282 55.556 28.70 16.06 40.66 3.60
869 992 4.380023 GGCCGTTTTACAACAGCATGAATA 60.380 41.667 0.00 0.00 37.96 1.75
875 998 1.677576 ACAACAGCATGAATATGGGCG 59.322 47.619 0.00 0.00 39.69 6.13
880 1003 1.133823 AGCATGAATATGGGCGGTTGA 60.134 47.619 0.00 0.00 34.79 3.18
894 1017 2.616960 CGGTTGACATCGGATCAGAAA 58.383 47.619 0.00 0.00 0.00 2.52
928 1052 0.978907 GAGGACGGGGTTTAAGTGGA 59.021 55.000 0.00 0.00 0.00 4.02
946 1070 4.087892 CCAGGGTGGTCAGGCTCG 62.088 72.222 0.00 0.00 31.35 5.03
947 1071 4.087892 CAGGGTGGTCAGGCTCGG 62.088 72.222 0.00 0.00 0.00 4.63
948 1072 4.316823 AGGGTGGTCAGGCTCGGA 62.317 66.667 0.00 0.00 0.00 4.55
949 1073 4.083862 GGGTGGTCAGGCTCGGAC 62.084 72.222 0.00 0.00 34.52 4.79
950 1074 2.997897 GGTGGTCAGGCTCGGACT 60.998 66.667 5.13 0.00 35.61 3.85
951 1075 2.584391 GGTGGTCAGGCTCGGACTT 61.584 63.158 5.13 0.00 35.61 3.01
952 1076 1.371558 GTGGTCAGGCTCGGACTTT 59.628 57.895 5.13 0.00 35.61 2.66
953 1077 0.670854 GTGGTCAGGCTCGGACTTTC 60.671 60.000 5.13 0.00 35.61 2.62
954 1078 0.832135 TGGTCAGGCTCGGACTTTCT 60.832 55.000 5.13 0.00 35.61 2.52
955 1079 1.183549 GGTCAGGCTCGGACTTTCTA 58.816 55.000 5.13 0.00 35.61 2.10
956 1080 1.135333 GGTCAGGCTCGGACTTTCTAG 59.865 57.143 5.13 0.00 35.61 2.43
957 1081 1.135333 GTCAGGCTCGGACTTTCTAGG 59.865 57.143 0.00 0.00 32.54 3.02
958 1082 1.005569 TCAGGCTCGGACTTTCTAGGA 59.994 52.381 0.00 0.00 0.00 2.94
959 1083 1.825474 CAGGCTCGGACTTTCTAGGAA 59.175 52.381 0.00 0.00 0.00 3.36
960 1084 2.104170 AGGCTCGGACTTTCTAGGAAG 58.896 52.381 9.40 9.40 0.00 3.46
961 1085 1.137282 GGCTCGGACTTTCTAGGAAGG 59.863 57.143 15.43 0.00 0.00 3.46
962 1086 2.100989 GCTCGGACTTTCTAGGAAGGA 58.899 52.381 15.43 2.24 0.00 3.36
963 1087 2.159212 GCTCGGACTTTCTAGGAAGGAC 60.159 54.545 15.43 8.43 0.00 3.85
964 1088 2.427812 CTCGGACTTTCTAGGAAGGACC 59.572 54.545 15.43 15.32 39.35 4.46
965 1089 2.176889 CGGACTTTCTAGGAAGGACCA 58.823 52.381 21.30 0.00 42.04 4.02
966 1090 2.565834 CGGACTTTCTAGGAAGGACCAA 59.434 50.000 21.30 0.00 42.04 3.67
967 1091 3.368531 CGGACTTTCTAGGAAGGACCAAG 60.369 52.174 21.30 8.79 42.04 3.61
968 1092 3.601435 GACTTTCTAGGAAGGACCAAGC 58.399 50.000 15.43 0.00 42.04 4.01
969 1093 2.979678 ACTTTCTAGGAAGGACCAAGCA 59.020 45.455 15.43 0.00 42.04 3.91
970 1094 3.008485 ACTTTCTAGGAAGGACCAAGCAG 59.992 47.826 15.43 0.00 42.04 4.24
971 1095 2.623418 TCTAGGAAGGACCAAGCAGA 57.377 50.000 0.00 0.00 42.04 4.26
972 1096 3.121929 TCTAGGAAGGACCAAGCAGAT 57.878 47.619 0.00 0.00 42.04 2.90
973 1097 3.034635 TCTAGGAAGGACCAAGCAGATC 58.965 50.000 0.00 0.00 42.04 2.75
974 1098 0.915364 AGGAAGGACCAAGCAGATCC 59.085 55.000 0.00 0.00 42.04 3.36
975 1099 0.620556 GGAAGGACCAAGCAGATCCA 59.379 55.000 0.00 0.00 38.79 3.41
976 1100 1.680249 GGAAGGACCAAGCAGATCCAC 60.680 57.143 0.00 0.00 38.79 4.02
979 1103 1.168714 GGACCAAGCAGATCCACAAC 58.831 55.000 0.00 0.00 32.35 3.32
984 1108 2.361757 CCAAGCAGATCCACAACAACAA 59.638 45.455 0.00 0.00 0.00 2.83
1004 1128 4.867047 ACAATGCAATGAACAACGACAAAA 59.133 33.333 9.20 0.00 0.00 2.44
1006 1130 4.831741 TGCAATGAACAACGACAAAAAC 57.168 36.364 0.00 0.00 0.00 2.43
1007 1131 4.237724 TGCAATGAACAACGACAAAAACA 58.762 34.783 0.00 0.00 0.00 2.83
1008 1132 4.686091 TGCAATGAACAACGACAAAAACAA 59.314 33.333 0.00 0.00 0.00 2.83
1009 1133 5.349817 TGCAATGAACAACGACAAAAACAAT 59.650 32.000 0.00 0.00 0.00 2.71
1010 1134 5.671997 GCAATGAACAACGACAAAAACAATG 59.328 36.000 0.00 0.00 0.00 2.82
1012 1136 4.810790 TGAACAACGACAAAAACAATGGT 58.189 34.783 0.00 0.00 0.00 3.55
1015 1139 6.528423 TGAACAACGACAAAAACAATGGTAAG 59.472 34.615 0.00 0.00 0.00 2.34
1016 1140 6.197364 ACAACGACAAAAACAATGGTAAGA 57.803 33.333 0.00 0.00 0.00 2.10
1017 1141 6.801575 ACAACGACAAAAACAATGGTAAGAT 58.198 32.000 0.00 0.00 0.00 2.40
1019 1143 8.407064 ACAACGACAAAAACAATGGTAAGATAA 58.593 29.630 0.00 0.00 0.00 1.75
1020 1144 9.239002 CAACGACAAAAACAATGGTAAGATAAA 57.761 29.630 0.00 0.00 0.00 1.40
1021 1145 9.458374 AACGACAAAAACAATGGTAAGATAAAG 57.542 29.630 0.00 0.00 0.00 1.85
1022 1146 8.626526 ACGACAAAAACAATGGTAAGATAAAGT 58.373 29.630 0.00 0.00 0.00 2.66
1023 1147 8.901748 CGACAAAAACAATGGTAAGATAAAGTG 58.098 33.333 0.00 0.00 0.00 3.16
1051 1175 3.149196 CAAATATCCCCGTCAATCCTGG 58.851 50.000 0.00 0.00 0.00 4.45
1057 1181 1.889105 CCGTCAATCCTGGCCATCG 60.889 63.158 5.51 0.00 0.00 3.84
1086 1210 0.174845 GATGACGACCGTTGGATGGA 59.825 55.000 0.00 0.00 0.00 3.41
1099 1223 1.683441 GATGGACGGGGGTGTTCTT 59.317 57.895 0.00 0.00 0.00 2.52
1110 1234 0.674895 GGTGTTCTTGCTGGAGCGAT 60.675 55.000 0.00 0.00 45.83 4.58
1120 1244 1.747206 GCTGGAGCGATAATTGTGGGT 60.747 52.381 0.00 0.00 0.00 4.51
1121 1245 1.942657 CTGGAGCGATAATTGTGGGTG 59.057 52.381 0.00 0.00 0.00 4.61
1122 1246 1.280710 TGGAGCGATAATTGTGGGTGT 59.719 47.619 0.00 0.00 0.00 4.16
1123 1247 2.502130 TGGAGCGATAATTGTGGGTGTA 59.498 45.455 0.00 0.00 0.00 2.90
1124 1248 3.131396 GGAGCGATAATTGTGGGTGTAG 58.869 50.000 0.00 0.00 0.00 2.74
1125 1249 3.181469 GGAGCGATAATTGTGGGTGTAGA 60.181 47.826 0.00 0.00 0.00 2.59
1126 1250 3.793559 AGCGATAATTGTGGGTGTAGAC 58.206 45.455 0.00 0.00 0.00 2.59
1159 1283 2.529389 AGGGTCGGGGCTGAACTT 60.529 61.111 0.00 0.00 0.00 2.66
1172 1298 2.099756 GCTGAACTTGTTTGCTGGAGTT 59.900 45.455 0.00 0.00 35.22 3.01
1221 1347 3.368948 GGCTCTCGTCTCCTTTTGATCTT 60.369 47.826 0.00 0.00 0.00 2.40
1223 1349 4.328712 GCTCTCGTCTCCTTTTGATCTTTC 59.671 45.833 0.00 0.00 0.00 2.62
1243 1369 2.829741 CCCCCATTTCGAAAGCAAAA 57.170 45.000 16.80 0.00 0.00 2.44
1372 1498 3.363627 GGTACTACCTACTTGCTGTCCT 58.636 50.000 0.00 0.00 34.73 3.85
1396 1522 2.506061 CCCTCTCCTCCGCTCCATG 61.506 68.421 0.00 0.00 0.00 3.66
1561 1687 1.966451 GTCAACAGCCAGGGGTTCG 60.966 63.158 0.00 0.00 0.00 3.95
1620 1747 5.585047 ACAGGTTAATATCTTCGTTTCTGCC 59.415 40.000 0.00 0.00 0.00 4.85
1777 1904 3.860641 CACAGTGGCTCTTTTGGTTTTT 58.139 40.909 0.00 0.00 0.00 1.94
1964 2092 2.223805 GCTAGTTGCCAACACTTTGCTT 60.224 45.455 10.69 0.00 35.15 3.91
1983 2111 0.319555 TGCCAAGTCGTAGCACTGTC 60.320 55.000 0.00 0.00 0.00 3.51
2027 2155 5.156804 ACTTTTGTTGTTCAGACACGATC 57.843 39.130 0.00 0.00 34.98 3.69
2069 2197 3.735237 TCACTGGAGTCTTCACTGAAC 57.265 47.619 0.00 0.00 30.63 3.18
2362 2491 7.070571 TCCTTTGATGTAGGGTTTGAAACATTT 59.929 33.333 10.53 0.00 32.87 2.32
2424 2553 6.146837 CCAAATAGATATTGAGAAGGACTGCG 59.853 42.308 0.00 0.00 0.00 5.18
2805 3368 8.988934 GCAAACGGATTTTCATCTGAGTATATA 58.011 33.333 0.00 0.00 37.97 0.86
2838 3401 6.040842 TCCTTTTTCTTCAGCTTACAATGCTT 59.959 34.615 0.00 0.00 38.92 3.91
2851 3414 6.018832 GCTTACAATGCTTTGTGTTGTTGAAT 60.019 34.615 24.00 0.16 45.56 2.57
3138 3701 9.177608 CTCAATAAATGTCCCTGATTGTTCTTA 57.822 33.333 0.00 0.00 0.00 2.10
3294 4514 4.886247 TTTTACTCCCTGTTTGTGTTCG 57.114 40.909 0.00 0.00 0.00 3.95
3476 4696 3.903090 TGGCAAAACCTTCTCATTCCAAT 59.097 39.130 0.00 0.00 40.22 3.16
3575 4795 6.697395 TCACACTGCTATACACATGTTTACT 58.303 36.000 0.00 0.00 0.00 2.24
3717 4938 7.452880 TTCCCATCTTCACATTTAGAAGTTG 57.547 36.000 0.00 0.00 42.35 3.16
3764 5103 3.391296 ACCACTCTGAGCTTTTAACTGGA 59.609 43.478 12.07 0.00 0.00 3.86
3817 5163 7.551585 TGCTTAAAAACTTCCAACTTCATGAA 58.448 30.769 8.12 8.12 0.00 2.57
3850 5196 6.848631 TCTCTCTATCCAGGGATGAAGAAATT 59.151 38.462 11.08 0.00 36.17 1.82
4071 5417 2.237143 TCCAGGTGCTCTCTTAACCATG 59.763 50.000 0.00 0.00 36.37 3.66
4103 5449 8.617290 TCATTTTGTAGAAACTCTTTACCTCC 57.383 34.615 0.00 0.00 0.00 4.30
4111 5457 1.622312 ACTCTTTACCTCCGGTGAACC 59.378 52.381 4.76 0.00 36.19 3.62
4799 6147 5.388994 GGCTTTGTTGTTGTTGTTGTTGTAC 60.389 40.000 0.00 0.00 0.00 2.90
4800 6148 5.175856 GCTTTGTTGTTGTTGTTGTTGTACA 59.824 36.000 0.00 0.00 0.00 2.90
4801 6149 6.292381 GCTTTGTTGTTGTTGTTGTTGTACAA 60.292 34.615 3.59 3.59 35.42 2.41
4802 6150 6.755461 TTGTTGTTGTTGTTGTTGTACAAG 57.245 33.333 8.98 0.00 39.00 3.16
4803 6151 5.833082 TGTTGTTGTTGTTGTTGTACAAGT 58.167 33.333 8.98 0.00 39.00 3.16
4804 6152 6.967135 TGTTGTTGTTGTTGTTGTACAAGTA 58.033 32.000 8.98 0.00 39.00 2.24
4805 6153 7.078851 TGTTGTTGTTGTTGTTGTACAAGTAG 58.921 34.615 8.98 0.00 39.00 2.57
4806 6154 6.804770 TGTTGTTGTTGTTGTACAAGTAGT 57.195 33.333 8.98 0.00 39.00 2.73
4807 6155 6.604012 TGTTGTTGTTGTTGTACAAGTAGTG 58.396 36.000 8.98 0.00 39.00 2.74
4808 6156 6.427242 TGTTGTTGTTGTTGTACAAGTAGTGA 59.573 34.615 8.98 0.00 39.00 3.41
4809 6157 7.041303 TGTTGTTGTTGTTGTACAAGTAGTGAA 60.041 33.333 8.98 0.00 39.00 3.18
4810 6158 7.618502 TGTTGTTGTTGTACAAGTAGTGAAT 57.381 32.000 8.98 0.00 39.00 2.57
4811 6159 8.719560 TGTTGTTGTTGTACAAGTAGTGAATA 57.280 30.769 8.98 0.00 39.00 1.75
4812 6160 9.163899 TGTTGTTGTTGTACAAGTAGTGAATAA 57.836 29.630 8.98 0.00 39.00 1.40
4815 6163 9.549078 TGTTGTTGTACAAGTAGTGAATAATGA 57.451 29.630 8.98 0.00 39.00 2.57
4816 6164 9.807386 GTTGTTGTACAAGTAGTGAATAATGAC 57.193 33.333 8.98 0.00 39.00 3.06
4817 6165 9.549078 TTGTTGTACAAGTAGTGAATAATGACA 57.451 29.630 8.98 0.00 32.34 3.58
5035 6385 7.145932 AGCTGTAACATTTTTGTAGGCTTAG 57.854 36.000 0.00 0.00 0.00 2.18
5167 6517 4.260375 GCTTGCATAGTTACCTGACAATCG 60.260 45.833 0.00 0.00 0.00 3.34
5397 6747 1.545428 CCTGCTAAACACCTCAAGCCA 60.545 52.381 0.00 0.00 33.99 4.75
5488 6838 4.268405 GCTTGATAACGAATTGCCAATTGG 59.732 41.667 20.81 20.81 38.53 3.16
5781 7367 7.339466 ACATAGAACACCAAGAAACTTCACTTT 59.661 33.333 0.00 0.00 0.00 2.66
6156 7745 5.356882 TGAATTTACAGCTTACACTGCAC 57.643 39.130 0.00 0.00 41.60 4.57
6165 7754 3.688185 AGCTTACACTGCACTGATTCATG 59.312 43.478 0.00 0.00 0.00 3.07
6185 7774 8.978874 TTCATGGCACTCTTTGTATGTTATAT 57.021 30.769 0.00 0.00 0.00 0.86
6262 7851 6.037098 ACAGATTTTACTATGAGAGACACGC 58.963 40.000 0.00 0.00 0.00 5.34
6271 7860 2.791655 TGAGAGACACGCTCCTTTCTA 58.208 47.619 0.00 0.00 45.10 2.10
6272 7861 2.488545 TGAGAGACACGCTCCTTTCTAC 59.511 50.000 0.00 0.00 45.10 2.59
6273 7862 2.750712 GAGAGACACGCTCCTTTCTACT 59.249 50.000 0.00 0.00 45.10 2.57
6274 7863 2.750712 AGAGACACGCTCCTTTCTACTC 59.249 50.000 0.00 0.00 45.10 2.59
6275 7864 1.819903 AGACACGCTCCTTTCTACTCC 59.180 52.381 0.00 0.00 0.00 3.85
6276 7865 0.896226 ACACGCTCCTTTCTACTCCC 59.104 55.000 0.00 0.00 0.00 4.30
6277 7866 1.187087 CACGCTCCTTTCTACTCCCT 58.813 55.000 0.00 0.00 0.00 4.20
6278 7867 1.135333 CACGCTCCTTTCTACTCCCTC 59.865 57.143 0.00 0.00 0.00 4.30
6279 7868 0.747852 CGCTCCTTTCTACTCCCTCC 59.252 60.000 0.00 0.00 0.00 4.30
6280 7869 0.747852 GCTCCTTTCTACTCCCTCCG 59.252 60.000 0.00 0.00 0.00 4.63
6281 7870 1.960953 GCTCCTTTCTACTCCCTCCGT 60.961 57.143 0.00 0.00 0.00 4.69
6282 7871 2.458620 CTCCTTTCTACTCCCTCCGTT 58.541 52.381 0.00 0.00 0.00 4.44
6283 7872 2.427812 CTCCTTTCTACTCCCTCCGTTC 59.572 54.545 0.00 0.00 0.00 3.95
6284 7873 1.481363 CCTTTCTACTCCCTCCGTTCC 59.519 57.143 0.00 0.00 0.00 3.62
6285 7874 2.176889 CTTTCTACTCCCTCCGTTCCA 58.823 52.381 0.00 0.00 0.00 3.53
6286 7875 2.314071 TTCTACTCCCTCCGTTCCAA 57.686 50.000 0.00 0.00 0.00 3.53
6287 7876 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
6288 7877 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
6289 7878 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
6290 7879 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
6291 7880 4.966805 TCTACTCCCTCCGTTCCAAAATAT 59.033 41.667 0.00 0.00 0.00 1.28
6292 7881 6.138263 TCTACTCCCTCCGTTCCAAAATATA 58.862 40.000 0.00 0.00 0.00 0.86
6293 7882 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
6294 7883 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
6295 7884 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
6296 7885 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
6297 7886 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
6298 7887 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
6299 7888 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
6300 7889 7.122204 CCCTCCGTTCCAAAATATAAGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
6301 7890 9.169592 CCTCCGTTCCAAAATATAAGTCTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
6318 7907 9.467796 AAGTCTTTTAAGAGATTCCAATAAGGG 57.532 33.333 0.00 0.00 35.02 3.95
6319 7908 8.836735 AGTCTTTTAAGAGATTCCAATAAGGGA 58.163 33.333 0.00 0.00 35.02 4.20
6320 7909 8.894731 GTCTTTTAAGAGATTCCAATAAGGGAC 58.105 37.037 0.00 0.00 34.24 4.46
6323 7912 9.901172 TTTTAAGAGATTCCAATAAGGGACTAC 57.099 33.333 0.00 0.00 38.49 2.73
6324 7913 8.618240 TTAAGAGATTCCAATAAGGGACTACA 57.382 34.615 0.00 0.00 38.49 2.74
6325 7914 7.698163 AAGAGATTCCAATAAGGGACTACAT 57.302 36.000 0.00 0.00 38.49 2.29
6326 7915 8.798975 AAGAGATTCCAATAAGGGACTACATA 57.201 34.615 0.00 0.00 38.49 2.29
6327 7916 8.196378 AGAGATTCCAATAAGGGACTACATAC 57.804 38.462 0.00 0.00 38.49 2.39
6328 7917 6.994221 AGATTCCAATAAGGGACTACATACG 58.006 40.000 0.00 0.00 38.49 3.06
6329 7918 5.540400 TTCCAATAAGGGACTACATACGG 57.460 43.478 0.00 0.00 38.49 4.02
6330 7919 4.806892 TCCAATAAGGGACTACATACGGA 58.193 43.478 0.00 0.00 38.49 4.69
6331 7920 4.831155 TCCAATAAGGGACTACATACGGAG 59.169 45.833 0.00 0.00 38.49 4.63
6332 7921 4.557205 CAATAAGGGACTACATACGGAGC 58.443 47.826 0.00 0.00 38.49 4.70
6333 7922 2.154567 AAGGGACTACATACGGAGCA 57.845 50.000 0.00 0.00 38.49 4.26
6334 7923 2.154567 AGGGACTACATACGGAGCAA 57.845 50.000 0.00 0.00 36.02 3.91
6335 7924 2.463752 AGGGACTACATACGGAGCAAA 58.536 47.619 0.00 0.00 36.02 3.68
6336 7925 2.835764 AGGGACTACATACGGAGCAAAA 59.164 45.455 0.00 0.00 36.02 2.44
6337 7926 3.454812 AGGGACTACATACGGAGCAAAAT 59.545 43.478 0.00 0.00 36.02 1.82
6338 7927 3.560068 GGGACTACATACGGAGCAAAATG 59.440 47.826 0.00 0.00 0.00 2.32
6339 7928 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
6340 7929 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
6341 7930 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
6342 7931 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
6343 7932 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
6344 7933 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
6345 7934 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
6346 7935 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
6347 7936 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6348 7937 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6349 7938 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6350 7939 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
6351 7940 5.295292 CGGAGCAAAATGAGTGAATCTACAT 59.705 40.000 0.00 0.00 0.00 2.29
6352 7941 6.183360 CGGAGCAAAATGAGTGAATCTACATT 60.183 38.462 0.00 0.00 34.99 2.71
6353 7942 7.192232 GGAGCAAAATGAGTGAATCTACATTC 58.808 38.462 0.00 0.00 39.24 2.67
6354 7943 7.066766 GGAGCAAAATGAGTGAATCTACATTCT 59.933 37.037 0.00 0.00 39.49 2.40
6355 7944 9.102757 GAGCAAAATGAGTGAATCTACATTCTA 57.897 33.333 0.00 0.00 39.49 2.10
6356 7945 9.453572 AGCAAAATGAGTGAATCTACATTCTAA 57.546 29.630 0.00 0.00 39.49 2.10
6393 7982 6.621316 ACATCCGTATGTAGTCTCTTAGTG 57.379 41.667 0.00 0.00 44.66 2.74
6394 7983 6.354938 ACATCCGTATGTAGTCTCTTAGTGA 58.645 40.000 0.00 0.00 44.66 3.41
6395 7984 6.827251 ACATCCGTATGTAGTCTCTTAGTGAA 59.173 38.462 0.00 0.00 44.66 3.18
6396 7985 7.338703 ACATCCGTATGTAGTCTCTTAGTGAAA 59.661 37.037 0.00 0.00 44.66 2.69
6397 7986 7.876936 TCCGTATGTAGTCTCTTAGTGAAAT 57.123 36.000 0.00 0.00 0.00 2.17
6398 7987 7.928103 TCCGTATGTAGTCTCTTAGTGAAATC 58.072 38.462 0.00 0.00 0.00 2.17
6399 7988 7.774157 TCCGTATGTAGTCTCTTAGTGAAATCT 59.226 37.037 0.00 0.00 0.00 2.40
6400 7989 8.071368 CCGTATGTAGTCTCTTAGTGAAATCTC 58.929 40.741 0.00 0.00 0.00 2.75
6401 7990 8.832521 CGTATGTAGTCTCTTAGTGAAATCTCT 58.167 37.037 0.00 0.00 0.00 3.10
6405 7994 9.961264 TGTAGTCTCTTAGTGAAATCTCTAGAA 57.039 33.333 0.00 0.00 0.00 2.10
6408 7997 9.747898 AGTCTCTTAGTGAAATCTCTAGAAAGA 57.252 33.333 0.00 0.00 0.00 2.52
6409 7998 9.783256 GTCTCTTAGTGAAATCTCTAGAAAGAC 57.217 37.037 0.00 11.17 0.00 3.01
6410 7999 9.747898 TCTCTTAGTGAAATCTCTAGAAAGACT 57.252 33.333 0.00 0.00 0.00 3.24
6428 8017 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
6429 8018 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
6430 8019 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
6431 8020 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
6432 8021 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
6473 8062 1.004277 TGGCCGCTTGTTAGAGGAAAT 59.996 47.619 0.00 0.00 43.44 2.17
6475 8064 2.872858 GGCCGCTTGTTAGAGGAAATAG 59.127 50.000 0.00 0.00 43.44 1.73
6476 8065 2.288186 GCCGCTTGTTAGAGGAAATAGC 59.712 50.000 0.00 0.00 43.44 2.97
6487 8076 5.712152 AGAGGAAATAGCCAACAACAAAG 57.288 39.130 0.00 0.00 0.00 2.77
6628 8260 9.453572 TCTACATTTTATCTGACAATTGAAGCT 57.546 29.630 13.59 3.68 0.00 3.74
6778 8410 3.753272 TGCAGGCATTCTTTTGAGTACTC 59.247 43.478 16.32 16.32 0.00 2.59
6902 8534 0.740737 CAATCCGCAATTCAGGGACC 59.259 55.000 0.00 0.00 31.52 4.46
6992 8624 7.814264 AGCAGAGGAAGTATGAAAATAATGG 57.186 36.000 0.00 0.00 0.00 3.16
7126 8759 3.603158 TGAGTAGCAACCTAATTCGCA 57.397 42.857 0.00 0.00 0.00 5.10
7145 8778 1.956477 CAGTCTTGGTCCTTTGGTTGG 59.044 52.381 0.00 0.00 0.00 3.77
7339 8973 5.667626 AGGAGCTCATTTCAGATTACCCTTA 59.332 40.000 17.19 0.00 0.00 2.69
7354 8990 9.012161 AGATTACCCTTATACTTCGTACAGATC 57.988 37.037 0.00 0.00 0.00 2.75
7390 9026 2.492019 TCTACGCATGTGGAATCGAG 57.508 50.000 11.65 0.00 32.03 4.04
7413 9049 2.540101 GCTGTTGCTGCTAGGTATAACG 59.460 50.000 0.00 0.00 36.03 3.18
7429 9065 6.495872 AGGTATAACGGCATAGATTTAGTCCA 59.504 38.462 0.00 0.00 0.00 4.02
7432 9068 9.216117 GTATAACGGCATAGATTTAGTCCATTT 57.784 33.333 0.00 0.00 0.00 2.32
7573 9209 3.044235 TCAATTGACTGACGCTGTGAT 57.956 42.857 3.38 0.00 0.00 3.06
7584 9222 5.473504 ACTGACGCTGTGATAAAAAGGAAAT 59.526 36.000 0.00 0.00 0.00 2.17
7693 9337 2.679837 ACACATGAAACATGATCTCCGC 59.320 45.455 16.86 0.00 0.00 5.54
7716 9360 5.559770 CCCAGGCAAAATAATTCCAAGTTT 58.440 37.500 0.00 0.00 0.00 2.66
7762 9406 3.128589 TCAAGGCAGAAACACAACAAGAC 59.871 43.478 0.00 0.00 0.00 3.01
7775 9419 3.070018 CAACAAGACGGAAAGCAGAGAT 58.930 45.455 0.00 0.00 0.00 2.75
7853 9497 6.101997 GGCTTTAAAGTTTGGAATCTCATGG 58.898 40.000 16.38 0.00 0.00 3.66
8006 9650 2.042831 GCCAGCATCTCACACCACC 61.043 63.158 0.00 0.00 0.00 4.61
8098 9742 2.414612 AGGAAAACCTACACTGACCCA 58.585 47.619 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
380 435 2.070262 TGTCGTGTCAAGCAGATCAG 57.930 50.000 0.00 0.00 0.00 2.90
392 447 1.593787 CCTGGCAGAGATGTCGTGT 59.406 57.895 17.94 0.00 0.00 4.49
461 533 3.394836 AGGAGGCCAAGCTCCGTC 61.395 66.667 5.01 0.00 44.09 4.79
464 536 3.574074 TTGCAGGAGGCCAAGCTCC 62.574 63.158 5.01 2.28 43.89 4.70
471 543 2.757099 CCATGGTTGCAGGAGGCC 60.757 66.667 2.57 0.00 43.89 5.19
475 548 2.982643 ATCCGCCATGGTTGCAGGA 61.983 57.895 14.67 14.36 39.52 3.86
523 597 1.092921 TCTCCACGCCACAACACAAC 61.093 55.000 0.00 0.00 0.00 3.32
655 753 0.389296 TGCCACGTTCGTCTGTATGG 60.389 55.000 0.00 0.00 0.00 2.74
670 769 3.361158 CACGCCCGTTCAATGCCA 61.361 61.111 0.00 0.00 0.00 4.92
853 974 3.314913 CGCCCATATTCATGCTGTTGTAA 59.685 43.478 0.00 0.00 0.00 2.41
869 992 1.983119 ATCCGATGTCAACCGCCCAT 61.983 55.000 0.00 0.00 0.00 4.00
875 998 2.352960 GCTTTCTGATCCGATGTCAACC 59.647 50.000 0.00 0.00 0.00 3.77
880 1003 1.148157 CGCGCTTTCTGATCCGATGT 61.148 55.000 5.56 0.00 0.00 3.06
916 1040 0.775542 ACCCTGGTCCACTTAAACCC 59.224 55.000 0.00 0.00 34.47 4.11
942 1066 2.100989 TCCTTCCTAGAAAGTCCGAGC 58.899 52.381 0.00 0.00 0.00 5.03
943 1067 2.427812 GGTCCTTCCTAGAAAGTCCGAG 59.572 54.545 0.00 0.00 0.00 4.63
944 1068 2.225192 TGGTCCTTCCTAGAAAGTCCGA 60.225 50.000 0.00 0.00 37.07 4.55
945 1069 2.176889 TGGTCCTTCCTAGAAAGTCCG 58.823 52.381 0.00 0.00 37.07 4.79
946 1070 3.620226 GCTTGGTCCTTCCTAGAAAGTCC 60.620 52.174 0.00 0.00 40.60 3.85
947 1071 3.008049 TGCTTGGTCCTTCCTAGAAAGTC 59.992 47.826 0.00 0.00 40.60 3.01
948 1072 2.979678 TGCTTGGTCCTTCCTAGAAAGT 59.020 45.455 0.00 0.00 40.60 2.66
949 1073 3.261897 TCTGCTTGGTCCTTCCTAGAAAG 59.738 47.826 0.00 0.00 40.60 2.62
950 1074 3.248024 TCTGCTTGGTCCTTCCTAGAAA 58.752 45.455 0.00 0.00 40.60 2.52
951 1075 2.902608 TCTGCTTGGTCCTTCCTAGAA 58.097 47.619 0.00 0.00 40.60 2.10
952 1076 2.623418 TCTGCTTGGTCCTTCCTAGA 57.377 50.000 0.00 0.00 40.60 2.43
953 1077 2.103941 GGATCTGCTTGGTCCTTCCTAG 59.896 54.545 2.91 0.00 40.98 3.02
954 1078 2.119495 GGATCTGCTTGGTCCTTCCTA 58.881 52.381 2.91 0.00 37.07 2.94
955 1079 0.915364 GGATCTGCTTGGTCCTTCCT 59.085 55.000 2.91 0.00 37.07 3.36
956 1080 0.620556 TGGATCTGCTTGGTCCTTCC 59.379 55.000 10.18 0.00 33.15 3.46
957 1081 1.003580 TGTGGATCTGCTTGGTCCTTC 59.996 52.381 10.18 5.32 33.15 3.46
958 1082 1.067295 TGTGGATCTGCTTGGTCCTT 58.933 50.000 10.18 0.00 33.15 3.36
959 1083 1.067295 TTGTGGATCTGCTTGGTCCT 58.933 50.000 10.18 0.00 33.15 3.85
960 1084 1.168714 GTTGTGGATCTGCTTGGTCC 58.831 55.000 3.14 3.14 0.00 4.46
961 1085 1.896220 TGTTGTGGATCTGCTTGGTC 58.104 50.000 0.00 0.00 0.00 4.02
962 1086 1.956477 GTTGTTGTGGATCTGCTTGGT 59.044 47.619 0.00 0.00 0.00 3.67
963 1087 1.955778 TGTTGTTGTGGATCTGCTTGG 59.044 47.619 0.00 0.00 0.00 3.61
964 1088 3.713858 TTGTTGTTGTGGATCTGCTTG 57.286 42.857 0.00 0.00 0.00 4.01
965 1089 3.553508 GCATTGTTGTTGTGGATCTGCTT 60.554 43.478 0.00 0.00 0.00 3.91
966 1090 2.029649 GCATTGTTGTTGTGGATCTGCT 60.030 45.455 0.00 0.00 0.00 4.24
967 1091 2.288334 TGCATTGTTGTTGTGGATCTGC 60.288 45.455 0.00 0.00 0.00 4.26
968 1092 3.646611 TGCATTGTTGTTGTGGATCTG 57.353 42.857 0.00 0.00 0.00 2.90
969 1093 4.281435 TCATTGCATTGTTGTTGTGGATCT 59.719 37.500 8.36 0.00 0.00 2.75
970 1094 4.558178 TCATTGCATTGTTGTTGTGGATC 58.442 39.130 8.36 0.00 0.00 3.36
971 1095 4.603989 TCATTGCATTGTTGTTGTGGAT 57.396 36.364 8.36 0.00 0.00 3.41
972 1096 4.118410 GTTCATTGCATTGTTGTTGTGGA 58.882 39.130 8.36 0.00 0.00 4.02
973 1097 3.869832 TGTTCATTGCATTGTTGTTGTGG 59.130 39.130 8.36 0.00 0.00 4.17
974 1098 5.257108 GTTGTTCATTGCATTGTTGTTGTG 58.743 37.500 8.36 0.00 0.00 3.33
975 1099 4.032672 CGTTGTTCATTGCATTGTTGTTGT 59.967 37.500 8.36 0.00 0.00 3.32
976 1100 4.267214 TCGTTGTTCATTGCATTGTTGTTG 59.733 37.500 8.36 0.00 0.00 3.33
979 1103 3.795639 TGTCGTTGTTCATTGCATTGTTG 59.204 39.130 8.36 0.00 0.00 3.33
984 1108 4.867047 TGTTTTTGTCGTTGTTCATTGCAT 59.133 33.333 0.00 0.00 0.00 3.96
1004 1128 9.227777 GAGTTACCACTTTATCTTACCATTGTT 57.772 33.333 0.00 0.00 31.22 2.83
1006 1130 8.786826 TGAGTTACCACTTTATCTTACCATTG 57.213 34.615 0.00 0.00 31.22 2.82
1007 1131 9.802039 TTTGAGTTACCACTTTATCTTACCATT 57.198 29.630 0.00 0.00 31.22 3.16
1008 1132 9.975218 ATTTGAGTTACCACTTTATCTTACCAT 57.025 29.630 0.00 0.00 31.22 3.55
1015 1139 7.172703 CGGGGATATTTGAGTTACCACTTTATC 59.827 40.741 0.00 0.00 31.22 1.75
1016 1140 6.996282 CGGGGATATTTGAGTTACCACTTTAT 59.004 38.462 0.00 0.00 31.22 1.40
1017 1141 6.070078 ACGGGGATATTTGAGTTACCACTTTA 60.070 38.462 0.00 0.00 31.22 1.85
1019 1143 4.226620 ACGGGGATATTTGAGTTACCACTT 59.773 41.667 0.00 0.00 31.22 3.16
1020 1144 3.778629 ACGGGGATATTTGAGTTACCACT 59.221 43.478 0.00 0.00 35.17 4.00
1021 1145 4.124970 GACGGGGATATTTGAGTTACCAC 58.875 47.826 0.00 0.00 0.00 4.16
1022 1146 3.775866 TGACGGGGATATTTGAGTTACCA 59.224 43.478 0.00 0.00 0.00 3.25
1023 1147 4.411256 TGACGGGGATATTTGAGTTACC 57.589 45.455 0.00 0.00 0.00 2.85
1028 1152 4.067896 CAGGATTGACGGGGATATTTGAG 58.932 47.826 0.00 0.00 0.00 3.02
1086 1210 2.113139 CAGCAAGAACACCCCCGT 59.887 61.111 0.00 0.00 0.00 5.28
1090 1214 2.328099 CGCTCCAGCAAGAACACCC 61.328 63.158 0.00 0.00 42.21 4.61
1099 1223 1.667236 CCACAATTATCGCTCCAGCA 58.333 50.000 0.00 0.00 42.21 4.41
1110 1234 5.421056 CCTCTACAGTCTACACCCACAATTA 59.579 44.000 0.00 0.00 0.00 1.40
1120 1244 5.432645 CTGTCAGATCCTCTACAGTCTACA 58.567 45.833 0.00 0.00 35.66 2.74
1121 1245 4.819630 CCTGTCAGATCCTCTACAGTCTAC 59.180 50.000 0.00 0.00 38.10 2.59
1122 1246 4.141367 CCCTGTCAGATCCTCTACAGTCTA 60.141 50.000 0.00 0.00 38.10 2.59
1123 1247 3.372566 CCCTGTCAGATCCTCTACAGTCT 60.373 52.174 0.00 0.00 38.10 3.24
1124 1248 2.955660 CCCTGTCAGATCCTCTACAGTC 59.044 54.545 0.00 0.00 38.10 3.51
1125 1249 2.313342 ACCCTGTCAGATCCTCTACAGT 59.687 50.000 0.00 0.00 38.10 3.55
1126 1250 2.955660 GACCCTGTCAGATCCTCTACAG 59.044 54.545 0.00 7.16 39.22 2.74
1159 1283 0.178992 CCTCCCAACTCCAGCAAACA 60.179 55.000 0.00 0.00 0.00 2.83
1243 1369 1.203001 CCTCTCTCTCCCGCCTAGAAT 60.203 57.143 0.00 0.00 0.00 2.40
1372 1498 4.507916 CGGAGGAGAGGGCGGAGA 62.508 72.222 0.00 0.00 0.00 3.71
1396 1522 0.256177 GGGAGTTGGGAGGTGAATCC 59.744 60.000 0.00 0.00 38.76 3.01
1561 1687 2.481289 AAGAAACCTAGCAGAGCACC 57.519 50.000 0.00 0.00 0.00 5.01
1620 1747 1.890041 TCCGCCTGGAAACAACACG 60.890 57.895 0.00 0.00 42.85 4.49
1678 1805 1.819288 CCCAAACAGCGACTCTCTAGA 59.181 52.381 0.00 0.00 0.00 2.43
1760 1887 5.462068 GTCACATAAAAACCAAAAGAGCCAC 59.538 40.000 0.00 0.00 0.00 5.01
1777 1904 1.729517 CAACAATCGCACCGTCACATA 59.270 47.619 0.00 0.00 0.00 2.29
1873 2000 5.970592 TGTCTCTCCAATGACACTAATCTG 58.029 41.667 0.00 0.00 38.15 2.90
1964 2092 0.319555 GACAGTGCTACGACTTGGCA 60.320 55.000 0.00 0.00 0.00 4.92
1983 2111 8.628882 AAGTCGTTTTTGTTATTTGAAGGAAG 57.371 30.769 0.00 0.00 0.00 3.46
2017 2145 2.202797 CCAGCGGGATCGTGTCTG 60.203 66.667 0.00 0.00 38.89 3.51
2069 2197 4.818546 AGAACAACCTCTGAATCAAGTGTG 59.181 41.667 0.00 0.00 0.00 3.82
2362 2491 3.840666 AGTTGAGATAGGACTTGCTTCCA 59.159 43.478 2.92 0.00 38.25 3.53
2424 2553 6.823689 ACAACATCTAACCACACCTCATATTC 59.176 38.462 0.00 0.00 0.00 1.75
2851 3414 6.834451 TCCTGGAAATTTGTTAAAGGTGTGTA 59.166 34.615 0.00 0.00 0.00 2.90
2997 3560 9.809096 TTGTTGATGTTAAGATGCTTTAAACAA 57.191 25.926 0.00 0.00 0.00 2.83
3374 4594 1.777878 AGAACAATGGTGGTGGTGGTA 59.222 47.619 0.00 0.00 0.00 3.25
3817 5163 4.402616 CCTGGATAGAGAGAGGGAGATT 57.597 50.000 0.00 0.00 0.00 2.40
3850 5196 1.074405 ACCAGAGATTGAAGCTGCCAA 59.926 47.619 0.00 4.54 0.00 4.52
3921 5267 2.032620 AGGTCAGTATAGGTGCCTTCG 58.967 52.381 0.00 0.00 0.00 3.79
4103 5449 4.906065 ATGATGATCAATTGGTTCACCG 57.094 40.909 5.42 0.00 39.43 4.94
4140 5487 4.338118 AGGCATTACACCAAATATCAACCG 59.662 41.667 0.00 0.00 0.00 4.44
4144 5491 5.009911 GCATCAGGCATTACACCAAATATCA 59.990 40.000 0.00 0.00 43.97 2.15
4800 6148 9.396022 CCTTGGTTATGTCATTATTCACTACTT 57.604 33.333 0.00 0.00 0.00 2.24
4801 6149 8.768397 TCCTTGGTTATGTCATTATTCACTACT 58.232 33.333 0.00 0.00 0.00 2.57
4802 6150 8.958119 TCCTTGGTTATGTCATTATTCACTAC 57.042 34.615 0.00 0.00 0.00 2.73
4803 6151 9.778741 GATCCTTGGTTATGTCATTATTCACTA 57.221 33.333 0.00 0.00 0.00 2.74
4804 6152 8.274322 TGATCCTTGGTTATGTCATTATTCACT 58.726 33.333 0.00 0.00 0.00 3.41
4805 6153 8.450578 TGATCCTTGGTTATGTCATTATTCAC 57.549 34.615 0.00 0.00 0.00 3.18
4811 6159 9.479549 AGTTTTATGATCCTTGGTTATGTCATT 57.520 29.630 0.00 0.00 0.00 2.57
4812 6160 8.906867 CAGTTTTATGATCCTTGGTTATGTCAT 58.093 33.333 0.00 0.00 0.00 3.06
4813 6161 7.148086 GCAGTTTTATGATCCTTGGTTATGTCA 60.148 37.037 0.00 0.00 0.00 3.58
4814 6162 7.148086 TGCAGTTTTATGATCCTTGGTTATGTC 60.148 37.037 0.00 0.00 0.00 3.06
4815 6163 6.663093 TGCAGTTTTATGATCCTTGGTTATGT 59.337 34.615 0.00 0.00 0.00 2.29
4816 6164 7.099266 TGCAGTTTTATGATCCTTGGTTATG 57.901 36.000 0.00 0.00 0.00 1.90
4817 6165 7.201938 CCATGCAGTTTTATGATCCTTGGTTAT 60.202 37.037 0.00 0.00 0.00 1.89
4976 6326 7.118680 CCTTTATGTACCGTTGAACACTTGTAT 59.881 37.037 0.00 0.00 0.00 2.29
5093 6443 3.068307 CAGGGGTATGGAAGAGTAGTTCG 59.932 52.174 0.00 0.00 0.00 3.95
5167 6517 4.574599 AGACAACATCAGTTTTTGCCTC 57.425 40.909 0.00 0.00 35.28 4.70
5397 6747 9.136323 ACAGGAATAAGAAGAAAAGTTTGACAT 57.864 29.630 0.00 0.00 0.00 3.06
5506 6856 6.784031 ACATAGTTCTCCTGAATGGACTTTT 58.216 36.000 0.00 0.00 40.56 2.27
5781 7367 9.883142 AAATAACACAAAAGAAATGACAAAGGA 57.117 25.926 0.00 0.00 0.00 3.36
5813 7400 3.012518 ACAACTGTGAGGCATGAATAGC 58.987 45.455 0.00 0.00 0.00 2.97
6156 7745 5.356190 ACATACAAAGAGTGCCATGAATCAG 59.644 40.000 0.00 0.00 30.81 2.90
6165 7754 7.495934 ACAGTGATATAACATACAAAGAGTGCC 59.504 37.037 0.00 0.00 0.00 5.01
6185 7774 7.495606 CAGTAATATTGGCAGAACATACAGTGA 59.504 37.037 0.00 0.00 0.00 3.41
6262 7851 2.146920 ACGGAGGGAGTAGAAAGGAG 57.853 55.000 0.00 0.00 0.00 3.69
6271 7860 5.191124 ACTTATATTTTGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
6272 7861 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6273 7862 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
6274 7863 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6275 7864 7.625828 AAAGACTTATATTTTGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
6292 7881 9.467796 CCCTTATTGGAATCTCTTAAAAGACTT 57.532 33.333 0.00 0.00 38.35 3.01
6293 7882 8.836735 TCCCTTATTGGAATCTCTTAAAAGACT 58.163 33.333 0.00 0.00 38.35 3.24
6294 7883 8.894731 GTCCCTTATTGGAATCTCTTAAAAGAC 58.105 37.037 0.00 0.00 35.80 3.01
6295 7884 8.836735 AGTCCCTTATTGGAATCTCTTAAAAGA 58.163 33.333 0.00 0.00 35.80 2.52
6297 7886 9.901172 GTAGTCCCTTATTGGAATCTCTTAAAA 57.099 33.333 0.00 0.00 35.80 1.52
6298 7887 9.053472 TGTAGTCCCTTATTGGAATCTCTTAAA 57.947 33.333 0.00 0.00 35.80 1.52
6299 7888 8.618240 TGTAGTCCCTTATTGGAATCTCTTAA 57.382 34.615 0.00 0.00 35.80 1.85
6300 7889 8.798975 ATGTAGTCCCTTATTGGAATCTCTTA 57.201 34.615 0.00 0.00 35.80 2.10
6301 7890 7.698163 ATGTAGTCCCTTATTGGAATCTCTT 57.302 36.000 0.00 0.00 35.80 2.85
6302 7891 7.039644 CGTATGTAGTCCCTTATTGGAATCTCT 60.040 40.741 0.00 0.00 35.80 3.10
6303 7892 7.091443 CGTATGTAGTCCCTTATTGGAATCTC 58.909 42.308 0.00 0.00 35.80 2.75
6304 7893 6.014499 CCGTATGTAGTCCCTTATTGGAATCT 60.014 42.308 0.00 0.00 35.80 2.40
6305 7894 6.014840 TCCGTATGTAGTCCCTTATTGGAATC 60.015 42.308 0.00 0.00 35.80 2.52
6306 7895 5.842328 TCCGTATGTAGTCCCTTATTGGAAT 59.158 40.000 0.00 0.00 35.80 3.01
6307 7896 5.210430 TCCGTATGTAGTCCCTTATTGGAA 58.790 41.667 0.00 0.00 35.80 3.53
6308 7897 4.806892 TCCGTATGTAGTCCCTTATTGGA 58.193 43.478 0.00 0.00 38.35 3.53
6309 7898 4.560919 GCTCCGTATGTAGTCCCTTATTGG 60.561 50.000 0.00 0.00 0.00 3.16
6310 7899 4.038763 TGCTCCGTATGTAGTCCCTTATTG 59.961 45.833 0.00 0.00 0.00 1.90
6311 7900 4.220724 TGCTCCGTATGTAGTCCCTTATT 58.779 43.478 0.00 0.00 0.00 1.40
6312 7901 3.840991 TGCTCCGTATGTAGTCCCTTAT 58.159 45.455 0.00 0.00 0.00 1.73
6313 7902 3.301794 TGCTCCGTATGTAGTCCCTTA 57.698 47.619 0.00 0.00 0.00 2.69
6314 7903 2.154567 TGCTCCGTATGTAGTCCCTT 57.845 50.000 0.00 0.00 0.00 3.95
6315 7904 2.154567 TTGCTCCGTATGTAGTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
6316 7905 2.973694 TTTGCTCCGTATGTAGTCCC 57.026 50.000 0.00 0.00 0.00 4.46
6317 7906 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
6318 7907 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
6319 7908 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
6320 7909 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
6321 7910 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
6322 7911 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
6323 7912 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
6324 7913 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6325 7914 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6326 7915 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6327 7916 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
6328 7917 6.690194 ATGTAGATTCACTCATTTTGCTCC 57.310 37.500 0.00 0.00 0.00 4.70
6329 7918 7.983307 AGAATGTAGATTCACTCATTTTGCTC 58.017 34.615 14.46 0.00 40.59 4.26
6330 7919 7.934855 AGAATGTAGATTCACTCATTTTGCT 57.065 32.000 14.46 0.00 40.59 3.91
6361 7950 9.597170 GAGACTACATACGGATGTATATAGACA 57.403 37.037 20.64 2.07 45.42 3.41
6362 7951 9.820725 AGAGACTACATACGGATGTATATAGAC 57.179 37.037 20.64 11.15 45.42 2.59
6367 7956 9.433153 CACTAAGAGACTACATACGGATGTATA 57.567 37.037 20.64 8.41 45.42 1.47
6368 7957 8.155510 TCACTAAGAGACTACATACGGATGTAT 58.844 37.037 20.64 11.04 45.42 2.29
6369 7958 7.503549 TCACTAAGAGACTACATACGGATGTA 58.496 38.462 19.32 19.32 44.77 2.29
6371 7960 6.862711 TCACTAAGAGACTACATACGGATG 57.137 41.667 5.94 5.94 39.16 3.51
6372 7961 7.876936 TTTCACTAAGAGACTACATACGGAT 57.123 36.000 0.00 0.00 0.00 4.18
6373 7962 7.774157 AGATTTCACTAAGAGACTACATACGGA 59.226 37.037 0.00 0.00 0.00 4.69
6374 7963 7.932335 AGATTTCACTAAGAGACTACATACGG 58.068 38.462 0.00 0.00 0.00 4.02
6375 7964 8.832521 AGAGATTTCACTAAGAGACTACATACG 58.167 37.037 0.00 0.00 0.00 3.06
6379 7968 9.961264 TTCTAGAGATTTCACTAAGAGACTACA 57.039 33.333 0.00 0.00 0.00 2.74
6382 7971 9.747898 TCTTTCTAGAGATTTCACTAAGAGACT 57.252 33.333 0.00 0.00 0.00 3.24
6383 7972 9.783256 GTCTTTCTAGAGATTTCACTAAGAGAC 57.217 37.037 0.00 0.00 0.00 3.36
6384 7973 9.747898 AGTCTTTCTAGAGATTTCACTAAGAGA 57.252 33.333 0.00 0.00 0.00 3.10
6402 7991 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
6403 7992 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
6404 7993 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
6405 7994 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
6406 7995 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
6407 7996 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
6408 7997 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
6409 7998 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
6410 7999 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
6411 8000 9.471702 CTATTACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
6412 8001 8.175431 TCTATTACTCCCTCCGTTCCTAAATAT 58.825 37.037 0.00 0.00 0.00 1.28
6413 8002 7.529555 TCTATTACTCCCTCCGTTCCTAAATA 58.470 38.462 0.00 0.00 0.00 1.40
6414 8003 6.379579 TCTATTACTCCCTCCGTTCCTAAAT 58.620 40.000 0.00 0.00 0.00 1.40
6415 8004 5.769835 TCTATTACTCCCTCCGTTCCTAAA 58.230 41.667 0.00 0.00 0.00 1.85
6416 8005 5.393068 TCTATTACTCCCTCCGTTCCTAA 57.607 43.478 0.00 0.00 0.00 2.69
6417 8006 5.393068 TTCTATTACTCCCTCCGTTCCTA 57.607 43.478 0.00 0.00 0.00 2.94
6418 8007 3.967467 TCTATTACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
6419 8008 5.349061 TTTTCTATTACTCCCTCCGTTCC 57.651 43.478 0.00 0.00 0.00 3.62
6420 8009 6.579865 TCATTTTCTATTACTCCCTCCGTTC 58.420 40.000 0.00 0.00 0.00 3.95
6421 8010 6.555463 TCATTTTCTATTACTCCCTCCGTT 57.445 37.500 0.00 0.00 0.00 4.44
6422 8011 6.749036 ATCATTTTCTATTACTCCCTCCGT 57.251 37.500 0.00 0.00 0.00 4.69
6423 8012 7.278868 GCATATCATTTTCTATTACTCCCTCCG 59.721 40.741 0.00 0.00 0.00 4.63
6424 8013 8.103305 TGCATATCATTTTCTATTACTCCCTCC 58.897 37.037 0.00 0.00 0.00 4.30
6425 8014 9.160496 CTGCATATCATTTTCTATTACTCCCTC 57.840 37.037 0.00 0.00 0.00 4.30
6426 8015 7.609532 GCTGCATATCATTTTCTATTACTCCCT 59.390 37.037 0.00 0.00 0.00 4.20
6427 8016 7.609532 AGCTGCATATCATTTTCTATTACTCCC 59.390 37.037 1.02 0.00 0.00 4.30
6428 8017 8.449397 CAGCTGCATATCATTTTCTATTACTCC 58.551 37.037 0.00 0.00 0.00 3.85
6429 8018 8.449397 CCAGCTGCATATCATTTTCTATTACTC 58.551 37.037 8.66 0.00 0.00 2.59
6430 8019 7.094463 GCCAGCTGCATATCATTTTCTATTACT 60.094 37.037 8.66 0.00 40.77 2.24
6431 8020 7.025963 GCCAGCTGCATATCATTTTCTATTAC 58.974 38.462 8.66 0.00 40.77 1.89
6432 8021 6.151648 GGCCAGCTGCATATCATTTTCTATTA 59.848 38.462 8.66 0.00 43.89 0.98
6473 8062 8.417106 TGAAATTGTAATCTTTGTTGTTGGCTA 58.583 29.630 0.00 0.00 0.00 3.93
6475 8064 7.010923 TGTGAAATTGTAATCTTTGTTGTTGGC 59.989 33.333 0.00 0.00 0.00 4.52
6476 8065 8.417780 TGTGAAATTGTAATCTTTGTTGTTGG 57.582 30.769 0.00 0.00 0.00 3.77
6778 8410 6.017933 GCTACGATTGTTTCATCTTTGTCAG 58.982 40.000 0.00 0.00 0.00 3.51
6902 8534 7.730364 ATCTAAAGTTATATTCGTTGGCTGG 57.270 36.000 0.00 0.00 0.00 4.85
6992 8624 2.076863 AGGCGTCTATGCAAAACAGAC 58.923 47.619 0.00 0.49 36.23 3.51
7126 8759 1.754201 GCCAACCAAAGGACCAAGACT 60.754 52.381 0.00 0.00 0.00 3.24
7354 8990 0.109342 AGAAGGTCAAGTGGCACCAG 59.891 55.000 15.27 7.33 34.80 4.00
7390 9026 2.029838 ATACCTAGCAGCAACAGCAC 57.970 50.000 0.00 0.00 0.00 4.40
7463 9099 2.940410 TCTTTCGACGGTTCAAGCTTTT 59.060 40.909 0.00 0.00 0.00 2.27
7693 9337 4.824479 ACTTGGAATTATTTTGCCTGGG 57.176 40.909 0.00 0.00 0.00 4.45
7762 9406 1.134877 TCTGCTCATCTCTGCTTTCCG 60.135 52.381 0.00 0.00 0.00 4.30
7775 9419 1.479730 AGCTCGATCATGTTCTGCTCA 59.520 47.619 12.43 0.00 0.00 4.26
7791 9435 3.631145 TGCAATGAGTTCAACAAGCTC 57.369 42.857 0.00 0.00 0.00 4.09
7919 9563 6.922247 TTATGTGACCGTTGAAGTTTACAA 57.078 33.333 0.00 0.00 0.00 2.41
8006 9650 1.208293 GTGGGGAAGAGGCTAGTGAAG 59.792 57.143 0.00 0.00 0.00 3.02
8098 9742 7.068103 TGCATCCATCCTATTATTTCGTGTTTT 59.932 33.333 0.00 0.00 0.00 2.43
8192 9836 4.722700 CAGGGGCCTGTGGTTCCG 62.723 72.222 0.84 0.00 39.10 4.30
8357 10001 3.130693 GGGTCTACACAGCGAAAGACTAT 59.869 47.826 0.00 0.00 38.69 2.12
8411 10055 2.635915 TGGTGAGGACGACAACCTATTT 59.364 45.455 0.00 0.00 37.93 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.