Multiple sequence alignment - TraesCS2D01G278300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G278300 chr2D 100.000 3605 0 0 1001 4605 349562247 349558643 0.000000e+00 6658
1 TraesCS2D01G278300 chr2D 100.000 669 0 0 1 669 349563247 349562579 0.000000e+00 1236
2 TraesCS2D01G278300 chr2B 96.183 3196 96 12 1001 4187 415316480 415313302 0.000000e+00 5203
3 TraesCS2D01G278300 chr2B 97.436 234 5 1 436 669 415316749 415316517 9.280000e-107 398
4 TraesCS2D01G278300 chr2A 97.045 2640 50 15 1001 3638 464856959 464854346 0.000000e+00 4418
5 TraesCS2D01G278300 chr2A 94.313 422 23 1 4185 4605 464853718 464853297 0.000000e+00 645
6 TraesCS2D01G278300 chr2A 95.423 284 9 2 3629 3911 464854279 464853999 2.530000e-122 449
7 TraesCS2D01G278300 chr2A 96.234 239 3 4 436 669 464857233 464856996 2.010000e-103 387
8 TraesCS2D01G278300 chr2A 89.916 238 14 4 3953 4190 464853890 464853663 9.690000e-77 298
9 TraesCS2D01G278300 chr4A 83.637 1809 212 52 1874 3655 22730280 22728529 0.000000e+00 1624
10 TraesCS2D01G278300 chr4D 83.417 1797 211 48 1874 3655 445339110 445337386 0.000000e+00 1587
11 TraesCS2D01G278300 chr4D 96.364 440 15 1 1 439 455739191 455739630 0.000000e+00 723
12 TraesCS2D01G278300 chr4D 96.128 439 17 0 1 439 503605209 503604771 0.000000e+00 717
13 TraesCS2D01G278300 chr4B 83.024 1779 218 52 1874 3634 554816798 554815086 0.000000e+00 1535
14 TraesCS2D01G278300 chr1D 95.682 440 18 1 1 439 479963090 479963529 0.000000e+00 706
15 TraesCS2D01G278300 chr6D 95.465 441 18 2 1 439 450362161 450361721 0.000000e+00 702
16 TraesCS2D01G278300 chr3D 95.455 440 19 1 1 439 454890144 454890583 0.000000e+00 701
17 TraesCS2D01G278300 chr3D 95.205 438 21 0 1 438 519113189 519112752 0.000000e+00 693
18 TraesCS2D01G278300 chr5D 95.455 440 17 2 1 439 116723148 116723585 0.000000e+00 699
19 TraesCS2D01G278300 chr7D 95.000 440 21 1 1 439 478050347 478050786 0.000000e+00 689
20 TraesCS2D01G278300 chr1A 94.785 441 21 2 1 440 415799543 415799104 0.000000e+00 686


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G278300 chr2D 349558643 349563247 4604 True 3947.0 6658 100.0000 1 4605 2 chr2D.!!$R1 4604
1 TraesCS2D01G278300 chr2B 415313302 415316749 3447 True 2800.5 5203 96.8095 436 4187 2 chr2B.!!$R1 3751
2 TraesCS2D01G278300 chr2A 464853297 464857233 3936 True 1239.4 4418 94.5862 436 4605 5 chr2A.!!$R1 4169
3 TraesCS2D01G278300 chr4A 22728529 22730280 1751 True 1624.0 1624 83.6370 1874 3655 1 chr4A.!!$R1 1781
4 TraesCS2D01G278300 chr4D 445337386 445339110 1724 True 1587.0 1587 83.4170 1874 3655 1 chr4D.!!$R1 1781
5 TraesCS2D01G278300 chr4B 554815086 554816798 1712 True 1535.0 1535 83.0240 1874 3634 1 chr4B.!!$R1 1760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.032813 ACAATTCTGCCTCCCATGGG 60.033 55.000 26.30 26.3 0.00 4.00 F
428 429 0.107654 ATAGTGCTTCTGCCGGTTCC 60.108 55.000 1.90 0.0 38.71 3.62 F
431 432 0.321298 GTGCTTCTGCCGGTTCCTTA 60.321 55.000 1.90 0.0 38.71 2.69 F
432 433 0.398696 TGCTTCTGCCGGTTCCTTAA 59.601 50.000 1.90 0.0 38.71 1.85 F
1199 1206 1.136774 GGCGGTTTCGAGGATTTGC 59.863 57.895 0.00 0.0 39.00 3.68 F
2675 2718 1.333636 GCCTTCTAGCCAGGAGAGCA 61.334 60.000 11.13 0.0 32.41 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 1206 0.470833 AGTCGATCCCCTCCATCCAG 60.471 60.000 0.00 0.00 0.00 3.86 R
1872 1881 0.511221 CCCACACGAACTTAGCAACG 59.489 55.000 0.00 0.00 0.00 4.10 R
2133 2153 3.323775 AACCTCAGAAGGGTACTCCAAA 58.676 45.455 0.00 0.00 42.48 3.28 R
2614 2649 9.467258 GAACTTGTCATGATTCAAAAAGAATGA 57.533 29.630 0.00 0.00 46.76 2.57 R
2771 2814 1.807814 AGACTGGAAACCCTGACAGT 58.192 50.000 0.93 0.00 45.99 3.55 R
4210 4409 0.248990 GTCATCTCTGAGCTCAGGCG 60.249 60.000 36.92 28.27 43.91 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.532523 TTTGATCGCATGTTCAGGCA 58.467 45.000 9.91 0.00 0.00 4.75
20 21 1.753930 TTGATCGCATGTTCAGGCAT 58.246 45.000 9.91 2.92 0.00 4.40
21 22 1.018910 TGATCGCATGTTCAGGCATG 58.981 50.000 9.91 0.00 46.50 4.06
22 23 0.309922 GATCGCATGTTCAGGCATGG 59.690 55.000 9.91 0.00 44.58 3.66
23 24 0.107066 ATCGCATGTTCAGGCATGGA 60.107 50.000 9.91 0.00 44.58 3.41
24 25 1.026182 TCGCATGTTCAGGCATGGAC 61.026 55.000 1.91 1.91 44.58 4.02
25 26 1.811860 GCATGTTCAGGCATGGACC 59.188 57.895 7.44 0.00 44.58 4.46
26 27 1.996786 GCATGTTCAGGCATGGACCG 61.997 60.000 7.44 0.00 44.58 4.79
27 28 1.077501 ATGTTCAGGCATGGACCGG 60.078 57.895 7.44 0.00 33.50 5.28
28 29 2.438434 GTTCAGGCATGGACCGGG 60.438 66.667 6.32 0.00 33.69 5.73
29 30 3.727258 TTCAGGCATGGACCGGGG 61.727 66.667 6.32 0.00 33.69 5.73
30 31 4.731853 TCAGGCATGGACCGGGGA 62.732 66.667 6.32 0.00 33.69 4.81
31 32 4.181010 CAGGCATGGACCGGGGAG 62.181 72.222 6.32 0.00 33.69 4.30
45 46 2.746277 GGAGGCGCCAACGAACAT 60.746 61.111 31.54 4.27 43.93 2.71
46 47 2.480555 GAGGCGCCAACGAACATG 59.519 61.111 31.54 0.00 43.93 3.21
47 48 2.031919 AGGCGCCAACGAACATGA 59.968 55.556 31.54 0.00 43.93 3.07
48 49 1.369091 GAGGCGCCAACGAACATGAT 61.369 55.000 31.54 1.71 43.93 2.45
49 50 1.226379 GGCGCCAACGAACATGATG 60.226 57.895 24.80 0.00 43.93 3.07
50 51 1.643868 GGCGCCAACGAACATGATGA 61.644 55.000 24.80 0.00 43.93 2.92
51 52 0.521242 GCGCCAACGAACATGATGAC 60.521 55.000 0.00 0.00 43.93 3.06
52 53 0.795698 CGCCAACGAACATGATGACA 59.204 50.000 0.00 0.00 43.93 3.58
53 54 1.196581 CGCCAACGAACATGATGACAA 59.803 47.619 0.00 0.00 43.93 3.18
54 55 2.159531 CGCCAACGAACATGATGACAAT 60.160 45.455 0.00 0.00 43.93 2.71
55 56 3.670359 CGCCAACGAACATGATGACAATT 60.670 43.478 0.00 0.00 43.93 2.32
56 57 3.853671 GCCAACGAACATGATGACAATTC 59.146 43.478 0.00 0.00 0.00 2.17
57 58 4.379813 GCCAACGAACATGATGACAATTCT 60.380 41.667 0.00 0.00 0.00 2.40
58 59 5.090757 CCAACGAACATGATGACAATTCTG 58.909 41.667 0.00 0.00 0.00 3.02
59 60 4.346734 ACGAACATGATGACAATTCTGC 57.653 40.909 0.00 0.00 0.00 4.26
60 61 3.127548 ACGAACATGATGACAATTCTGCC 59.872 43.478 0.00 0.00 0.00 4.85
61 62 3.376234 CGAACATGATGACAATTCTGCCT 59.624 43.478 0.00 0.00 0.00 4.75
62 63 4.495349 CGAACATGATGACAATTCTGCCTC 60.495 45.833 0.00 0.00 0.00 4.70
63 64 3.285484 ACATGATGACAATTCTGCCTCC 58.715 45.455 0.00 0.00 0.00 4.30
64 65 2.425143 TGATGACAATTCTGCCTCCC 57.575 50.000 0.00 0.00 0.00 4.30
65 66 1.634973 TGATGACAATTCTGCCTCCCA 59.365 47.619 0.00 0.00 0.00 4.37
66 67 2.242965 TGATGACAATTCTGCCTCCCAT 59.757 45.455 0.00 0.00 0.00 4.00
67 68 2.133281 TGACAATTCTGCCTCCCATG 57.867 50.000 0.00 0.00 0.00 3.66
68 69 1.341285 TGACAATTCTGCCTCCCATGG 60.341 52.381 4.14 4.14 0.00 3.66
69 70 0.032813 ACAATTCTGCCTCCCATGGG 60.033 55.000 26.30 26.30 0.00 4.00
70 71 0.259647 CAATTCTGCCTCCCATGGGA 59.740 55.000 31.83 31.83 42.90 4.37
78 79 3.105785 TCCCATGGGAGTCTCCGA 58.894 61.111 30.62 9.58 39.76 4.55
79 80 1.381327 TCCCATGGGAGTCTCCGAC 60.381 63.158 30.62 0.46 39.76 4.79
80 81 1.381872 CCCATGGGAGTCTCCGACT 60.382 63.158 28.27 0.00 46.42 4.18
81 82 1.680522 CCCATGGGAGTCTCCGACTG 61.681 65.000 28.27 9.41 43.53 3.51
82 83 1.680522 CCATGGGAGTCTCCGACTGG 61.681 65.000 12.91 14.14 43.53 4.00
83 84 0.972983 CATGGGAGTCTCCGACTGGT 60.973 60.000 12.91 0.00 43.53 4.00
84 85 0.972983 ATGGGAGTCTCCGACTGGTG 60.973 60.000 12.91 0.00 43.53 4.17
85 86 2.352032 GGGAGTCTCCGACTGGTGG 61.352 68.421 12.91 0.00 43.53 4.61
86 87 2.352032 GGAGTCTCCGACTGGTGGG 61.352 68.421 2.28 0.00 43.53 4.61
87 88 1.304217 GAGTCTCCGACTGGTGGGA 60.304 63.158 0.57 4.53 43.53 4.37
88 89 0.684805 GAGTCTCCGACTGGTGGGAT 60.685 60.000 5.02 0.00 43.53 3.85
89 90 0.684805 AGTCTCCGACTGGTGGGATC 60.685 60.000 5.02 2.94 41.76 3.36
90 91 1.753078 TCTCCGACTGGTGGGATCG 60.753 63.158 5.02 0.00 36.86 3.69
93 94 3.461773 CGACTGGTGGGATCGGCT 61.462 66.667 0.00 0.00 32.22 5.52
94 95 2.501610 GACTGGTGGGATCGGCTC 59.498 66.667 0.00 0.00 0.00 4.70
95 96 2.284625 ACTGGTGGGATCGGCTCA 60.285 61.111 0.00 0.00 0.00 4.26
96 97 1.690219 GACTGGTGGGATCGGCTCAT 61.690 60.000 0.00 0.00 0.00 2.90
97 98 1.070445 CTGGTGGGATCGGCTCATC 59.930 63.158 0.00 0.00 0.00 2.92
98 99 1.383109 TGGTGGGATCGGCTCATCT 60.383 57.895 0.00 0.00 0.00 2.90
99 100 1.070445 GGTGGGATCGGCTCATCTG 59.930 63.158 0.00 0.00 0.00 2.90
100 101 1.690219 GGTGGGATCGGCTCATCTGT 61.690 60.000 0.00 0.00 0.00 3.41
101 102 0.249657 GTGGGATCGGCTCATCTGTC 60.250 60.000 0.00 0.00 0.00 3.51
102 103 1.369321 GGGATCGGCTCATCTGTCC 59.631 63.158 0.00 0.00 0.00 4.02
103 104 1.369321 GGATCGGCTCATCTGTCCC 59.631 63.158 0.00 0.00 0.00 4.46
104 105 1.369321 GATCGGCTCATCTGTCCCC 59.631 63.158 0.00 0.00 0.00 4.81
105 106 1.074926 ATCGGCTCATCTGTCCCCT 60.075 57.895 0.00 0.00 0.00 4.79
106 107 1.406065 ATCGGCTCATCTGTCCCCTG 61.406 60.000 0.00 0.00 0.00 4.45
107 108 2.362369 CGGCTCATCTGTCCCCTGT 61.362 63.158 0.00 0.00 0.00 4.00
108 109 1.524482 GGCTCATCTGTCCCCTGTC 59.476 63.158 0.00 0.00 0.00 3.51
109 110 1.524482 GCTCATCTGTCCCCTGTCC 59.476 63.158 0.00 0.00 0.00 4.02
110 111 1.267574 GCTCATCTGTCCCCTGTCCA 61.268 60.000 0.00 0.00 0.00 4.02
111 112 1.279496 CTCATCTGTCCCCTGTCCAA 58.721 55.000 0.00 0.00 0.00 3.53
112 113 1.209019 CTCATCTGTCCCCTGTCCAAG 59.791 57.143 0.00 0.00 0.00 3.61
113 114 0.254178 CATCTGTCCCCTGTCCAAGG 59.746 60.000 0.00 0.00 46.94 3.61
124 125 2.151295 GTCCAAGGACGAAAGACGC 58.849 57.895 3.08 0.00 46.94 5.19
125 126 1.005394 TCCAAGGACGAAAGACGCC 60.005 57.895 0.00 0.00 46.94 5.68
126 127 2.380410 CCAAGGACGAAAGACGCCG 61.380 63.158 0.00 0.00 46.94 6.46
127 128 2.048503 AAGGACGAAAGACGCCGG 60.049 61.111 0.00 0.00 46.94 6.13
128 129 4.736896 AGGACGAAAGACGCCGGC 62.737 66.667 19.07 19.07 46.94 6.13
145 146 4.787999 CGTAGCGGTCACTTCCTC 57.212 61.111 0.00 0.00 0.00 3.71
146 147 2.181584 CGTAGCGGTCACTTCCTCT 58.818 57.895 0.00 0.00 0.00 3.69
147 148 1.376543 CGTAGCGGTCACTTCCTCTA 58.623 55.000 0.00 0.00 0.00 2.43
148 149 1.063764 CGTAGCGGTCACTTCCTCTAC 59.936 57.143 0.00 0.00 40.39 2.59
149 150 2.089980 GTAGCGGTCACTTCCTCTACA 58.910 52.381 0.00 0.00 42.18 2.74
150 151 0.889306 AGCGGTCACTTCCTCTACAC 59.111 55.000 0.00 0.00 0.00 2.90
151 152 0.108756 GCGGTCACTTCCTCTACACC 60.109 60.000 0.00 0.00 0.00 4.16
152 153 1.254026 CGGTCACTTCCTCTACACCA 58.746 55.000 0.00 0.00 0.00 4.17
153 154 1.825474 CGGTCACTTCCTCTACACCAT 59.175 52.381 0.00 0.00 0.00 3.55
154 155 2.233922 CGGTCACTTCCTCTACACCATT 59.766 50.000 0.00 0.00 0.00 3.16
155 156 3.306780 CGGTCACTTCCTCTACACCATTT 60.307 47.826 0.00 0.00 0.00 2.32
156 157 4.003648 GGTCACTTCCTCTACACCATTTG 58.996 47.826 0.00 0.00 0.00 2.32
157 158 4.003648 GTCACTTCCTCTACACCATTTGG 58.996 47.826 0.00 0.00 42.17 3.28
158 159 3.907474 TCACTTCCTCTACACCATTTGGA 59.093 43.478 3.01 0.00 38.94 3.53
159 160 4.349636 TCACTTCCTCTACACCATTTGGAA 59.650 41.667 3.01 0.00 38.94 3.53
160 161 5.014123 TCACTTCCTCTACACCATTTGGAAT 59.986 40.000 3.01 0.00 38.94 3.01
161 162 6.214615 TCACTTCCTCTACACCATTTGGAATA 59.785 38.462 3.01 0.00 38.94 1.75
162 163 7.056635 CACTTCCTCTACACCATTTGGAATAT 58.943 38.462 3.01 0.00 38.94 1.28
163 164 7.227512 CACTTCCTCTACACCATTTGGAATATC 59.772 40.741 3.01 0.00 38.94 1.63
164 165 7.127955 ACTTCCTCTACACCATTTGGAATATCT 59.872 37.037 3.01 0.00 38.94 1.98
165 166 6.830912 TCCTCTACACCATTTGGAATATCTG 58.169 40.000 3.01 0.00 38.94 2.90
166 167 6.000219 CCTCTACACCATTTGGAATATCTGG 59.000 44.000 3.01 0.00 38.94 3.86
167 168 6.183361 CCTCTACACCATTTGGAATATCTGGA 60.183 42.308 3.01 0.00 38.94 3.86
168 169 7.206789 TCTACACCATTTGGAATATCTGGAA 57.793 36.000 3.01 0.00 38.94 3.53
169 170 7.282585 TCTACACCATTTGGAATATCTGGAAG 58.717 38.462 3.01 0.00 38.94 3.46
170 171 5.203528 ACACCATTTGGAATATCTGGAAGG 58.796 41.667 3.01 0.00 38.94 3.46
171 172 5.044179 ACACCATTTGGAATATCTGGAAGGA 60.044 40.000 3.01 0.00 38.94 3.36
172 173 5.533903 CACCATTTGGAATATCTGGAAGGAG 59.466 44.000 3.01 0.00 38.94 3.69
173 174 4.522022 CCATTTGGAATATCTGGAAGGAGC 59.478 45.833 0.00 0.00 37.39 4.70
174 175 3.475566 TTGGAATATCTGGAAGGAGCG 57.524 47.619 0.00 0.00 0.00 5.03
175 176 1.070758 TGGAATATCTGGAAGGAGCGC 59.929 52.381 0.00 0.00 0.00 5.92
176 177 1.070758 GGAATATCTGGAAGGAGCGCA 59.929 52.381 11.47 0.00 0.00 6.09
177 178 2.485479 GGAATATCTGGAAGGAGCGCAA 60.485 50.000 11.47 0.00 0.00 4.85
178 179 2.246719 ATATCTGGAAGGAGCGCAAC 57.753 50.000 11.47 0.54 0.00 4.17
179 180 0.178068 TATCTGGAAGGAGCGCAACC 59.822 55.000 11.47 13.25 0.00 3.77
180 181 2.859273 ATCTGGAAGGAGCGCAACCG 62.859 60.000 11.47 0.00 37.57 4.44
190 191 2.935955 CGCAACCGCCGGATATTC 59.064 61.111 11.71 0.00 33.11 1.75
191 192 1.885388 CGCAACCGCCGGATATTCA 60.885 57.895 11.71 0.00 33.11 2.57
192 193 1.227999 CGCAACCGCCGGATATTCAT 61.228 55.000 11.71 0.00 33.11 2.57
193 194 0.517316 GCAACCGCCGGATATTCATC 59.483 55.000 11.71 0.00 0.00 2.92
194 195 0.790207 CAACCGCCGGATATTCATCG 59.210 55.000 11.71 0.00 31.33 3.84
195 196 0.320421 AACCGCCGGATATTCATCGG 60.320 55.000 11.71 8.74 42.24 4.18
196 197 2.100631 CCGCCGGATATTCATCGGC 61.101 63.158 5.05 14.92 42.48 5.54
197 198 1.374125 CGCCGGATATTCATCGGCA 60.374 57.895 22.65 0.00 44.32 5.69
198 199 1.626654 CGCCGGATATTCATCGGCAC 61.627 60.000 22.65 0.00 44.32 5.01
199 200 1.298859 GCCGGATATTCATCGGCACC 61.299 60.000 19.13 0.00 43.93 5.01
200 201 0.673644 CCGGATATTCATCGGCACCC 60.674 60.000 0.00 0.00 31.77 4.61
213 214 3.314331 CACCCGCCTCACTCACCT 61.314 66.667 0.00 0.00 0.00 4.00
214 215 3.314331 ACCCGCCTCACTCACCTG 61.314 66.667 0.00 0.00 0.00 4.00
215 216 4.087892 CCCGCCTCACTCACCTGG 62.088 72.222 0.00 0.00 0.00 4.45
216 217 2.997315 CCGCCTCACTCACCTGGA 60.997 66.667 0.00 0.00 0.00 3.86
229 230 4.864334 CTGGAGGTGGCGGCCATC 62.864 72.222 26.68 25.70 35.28 3.51
252 253 3.872608 GCTCGACGATATAAGAATGCG 57.127 47.619 0.00 0.00 0.00 4.73
253 254 2.594654 GCTCGACGATATAAGAATGCGG 59.405 50.000 0.00 0.00 0.00 5.69
254 255 3.172050 CTCGACGATATAAGAATGCGGG 58.828 50.000 0.00 0.00 0.00 6.13
255 256 1.654105 CGACGATATAAGAATGCGGGC 59.346 52.381 0.00 0.00 0.00 6.13
256 257 2.671351 CGACGATATAAGAATGCGGGCT 60.671 50.000 0.00 0.00 0.00 5.19
257 258 3.326747 GACGATATAAGAATGCGGGCTT 58.673 45.455 0.00 0.00 0.00 4.35
258 259 3.067106 ACGATATAAGAATGCGGGCTTG 58.933 45.455 0.00 0.00 0.00 4.01
259 260 2.159653 CGATATAAGAATGCGGGCTTGC 60.160 50.000 0.00 0.00 0.00 4.01
260 261 1.225855 TATAAGAATGCGGGCTTGCG 58.774 50.000 0.00 0.00 37.81 4.85
261 262 2.063541 ATAAGAATGCGGGCTTGCGC 62.064 55.000 0.00 0.00 37.81 6.09
278 279 3.053828 CCTTTGGCAGGGCACAAG 58.946 61.111 0.00 3.41 39.39 3.16
279 280 1.833934 CCTTTGGCAGGGCACAAGT 60.834 57.895 0.00 0.00 39.39 3.16
280 281 1.364901 CTTTGGCAGGGCACAAGTG 59.635 57.895 0.00 0.00 0.00 3.16
281 282 1.076412 TTTGGCAGGGCACAAGTGA 60.076 52.632 4.04 0.00 0.00 3.41
282 283 1.391157 TTTGGCAGGGCACAAGTGAC 61.391 55.000 4.04 0.00 38.06 3.67
283 284 3.357079 GGCAGGGCACAAGTGACG 61.357 66.667 4.04 0.00 40.25 4.35
284 285 2.280797 GCAGGGCACAAGTGACGA 60.281 61.111 4.04 0.00 40.25 4.20
285 286 2.607892 GCAGGGCACAAGTGACGAC 61.608 63.158 4.04 0.00 40.25 4.34
286 287 1.961277 CAGGGCACAAGTGACGACC 60.961 63.158 4.04 0.49 40.25 4.79
287 288 3.041940 GGGCACAAGTGACGACCG 61.042 66.667 4.04 0.00 40.25 4.79
288 289 3.041940 GGCACAAGTGACGACCGG 61.042 66.667 0.00 0.00 0.00 5.28
289 290 3.712881 GCACAAGTGACGACCGGC 61.713 66.667 0.00 0.00 0.00 6.13
290 291 2.279851 CACAAGTGACGACCGGCA 60.280 61.111 0.00 0.00 0.00 5.69
291 292 1.667830 CACAAGTGACGACCGGCAT 60.668 57.895 0.00 0.00 34.62 4.40
292 293 1.070786 ACAAGTGACGACCGGCATT 59.929 52.632 0.00 0.00 34.62 3.56
293 294 1.227999 ACAAGTGACGACCGGCATTG 61.228 55.000 0.00 9.50 34.62 2.82
294 295 1.671054 AAGTGACGACCGGCATTGG 60.671 57.895 0.00 0.00 34.62 3.16
295 296 3.124921 GTGACGACCGGCATTGGG 61.125 66.667 0.00 0.00 34.62 4.12
296 297 3.632080 TGACGACCGGCATTGGGT 61.632 61.111 0.00 0.00 41.48 4.51
297 298 3.124921 GACGACCGGCATTGGGTG 61.125 66.667 0.00 0.00 38.07 4.61
298 299 3.599285 GACGACCGGCATTGGGTGA 62.599 63.158 0.00 0.00 38.07 4.02
299 300 2.124736 CGACCGGCATTGGGTGAT 60.125 61.111 0.00 0.00 38.07 3.06
300 301 1.748879 CGACCGGCATTGGGTGATT 60.749 57.895 0.00 0.00 38.07 2.57
301 302 1.312371 CGACCGGCATTGGGTGATTT 61.312 55.000 0.00 0.00 38.07 2.17
302 303 0.173255 GACCGGCATTGGGTGATTTG 59.827 55.000 0.00 0.00 38.07 2.32
303 304 1.257055 ACCGGCATTGGGTGATTTGG 61.257 55.000 0.00 0.00 36.14 3.28
304 305 1.257055 CCGGCATTGGGTGATTTGGT 61.257 55.000 0.00 0.00 0.00 3.67
305 306 0.607620 CGGCATTGGGTGATTTGGTT 59.392 50.000 0.00 0.00 0.00 3.67
306 307 1.404047 CGGCATTGGGTGATTTGGTTC 60.404 52.381 0.00 0.00 0.00 3.62
307 308 1.622811 GGCATTGGGTGATTTGGTTCA 59.377 47.619 0.00 0.00 0.00 3.18
308 309 2.612721 GGCATTGGGTGATTTGGTTCAC 60.613 50.000 0.00 0.00 44.27 3.18
309 310 2.299867 GCATTGGGTGATTTGGTTCACT 59.700 45.455 4.75 0.00 44.39 3.41
310 311 3.244181 GCATTGGGTGATTTGGTTCACTT 60.244 43.478 4.75 0.00 44.39 3.16
311 312 4.021544 GCATTGGGTGATTTGGTTCACTTA 60.022 41.667 4.75 0.00 44.39 2.24
312 313 5.713025 CATTGGGTGATTTGGTTCACTTAG 58.287 41.667 4.75 0.00 44.39 2.18
313 314 3.153919 TGGGTGATTTGGTTCACTTAGC 58.846 45.455 4.75 0.00 44.39 3.09
314 315 3.153919 GGGTGATTTGGTTCACTTAGCA 58.846 45.455 4.75 0.00 44.39 3.49
315 316 3.763897 GGGTGATTTGGTTCACTTAGCAT 59.236 43.478 4.75 0.00 44.39 3.79
316 317 4.947388 GGGTGATTTGGTTCACTTAGCATA 59.053 41.667 4.75 0.00 44.39 3.14
317 318 5.163652 GGGTGATTTGGTTCACTTAGCATAC 60.164 44.000 4.75 0.00 44.39 2.39
318 319 5.163652 GGTGATTTGGTTCACTTAGCATACC 60.164 44.000 4.75 0.00 44.39 2.73
319 320 5.414454 GTGATTTGGTTCACTTAGCATACCA 59.586 40.000 0.00 0.00 42.22 3.25
320 321 5.414454 TGATTTGGTTCACTTAGCATACCAC 59.586 40.000 0.00 0.00 38.53 4.16
321 322 4.359434 TTGGTTCACTTAGCATACCACA 57.641 40.909 0.00 0.00 38.53 4.17
322 323 4.359434 TGGTTCACTTAGCATACCACAA 57.641 40.909 0.00 0.00 34.13 3.33
323 324 4.069304 TGGTTCACTTAGCATACCACAAC 58.931 43.478 0.00 0.00 34.13 3.32
324 325 3.124636 GGTTCACTTAGCATACCACAACG 59.875 47.826 0.00 0.00 0.00 4.10
325 326 2.967362 TCACTTAGCATACCACAACGG 58.033 47.619 0.00 0.00 42.50 4.44
338 339 3.946606 CCACAACGGTTCTTATAAGGGT 58.053 45.455 12.54 3.62 0.00 4.34
339 340 4.329392 CCACAACGGTTCTTATAAGGGTT 58.671 43.478 12.54 8.87 0.00 4.11
340 341 4.763279 CCACAACGGTTCTTATAAGGGTTT 59.237 41.667 12.54 0.00 0.00 3.27
341 342 5.106436 CCACAACGGTTCTTATAAGGGTTTC 60.106 44.000 12.54 0.04 0.00 2.78
342 343 4.692155 ACAACGGTTCTTATAAGGGTTTCG 59.308 41.667 12.54 11.32 0.00 3.46
343 344 4.541973 ACGGTTCTTATAAGGGTTTCGT 57.458 40.909 12.54 11.86 0.00 3.85
344 345 4.498241 ACGGTTCTTATAAGGGTTTCGTC 58.502 43.478 12.54 0.00 0.00 4.20
345 346 4.021192 ACGGTTCTTATAAGGGTTTCGTCA 60.021 41.667 12.54 0.00 0.00 4.35
346 347 4.565564 CGGTTCTTATAAGGGTTTCGTCAG 59.434 45.833 12.54 0.00 0.00 3.51
347 348 4.874396 GGTTCTTATAAGGGTTTCGTCAGG 59.126 45.833 12.54 0.00 0.00 3.86
348 349 5.485620 GTTCTTATAAGGGTTTCGTCAGGT 58.514 41.667 12.54 0.00 0.00 4.00
349 350 5.750352 TCTTATAAGGGTTTCGTCAGGTT 57.250 39.130 12.54 0.00 0.00 3.50
350 351 6.117975 TCTTATAAGGGTTTCGTCAGGTTT 57.882 37.500 12.54 0.00 0.00 3.27
351 352 6.536447 TCTTATAAGGGTTTCGTCAGGTTTT 58.464 36.000 12.54 0.00 0.00 2.43
352 353 6.652062 TCTTATAAGGGTTTCGTCAGGTTTTC 59.348 38.462 12.54 0.00 0.00 2.29
353 354 1.977056 AGGGTTTCGTCAGGTTTTCC 58.023 50.000 0.00 0.00 41.05 3.13
354 355 0.956633 GGGTTTCGTCAGGTTTTCCC 59.043 55.000 0.00 0.00 41.86 3.97
355 356 1.682740 GGTTTCGTCAGGTTTTCCCA 58.317 50.000 0.00 0.00 41.86 4.37
356 357 2.025898 GGTTTCGTCAGGTTTTCCCAA 58.974 47.619 0.00 0.00 41.86 4.12
357 358 2.427812 GGTTTCGTCAGGTTTTCCCAAA 59.572 45.455 0.00 0.00 41.86 3.28
358 359 3.119065 GGTTTCGTCAGGTTTTCCCAAAA 60.119 43.478 0.00 0.00 41.86 2.44
359 360 4.496360 GTTTCGTCAGGTTTTCCCAAAAA 58.504 39.130 0.00 0.00 41.86 1.94
385 386 8.747538 AACCTGTCATCTTTATACATAAACCC 57.252 34.615 0.00 0.00 0.00 4.11
386 387 8.102484 ACCTGTCATCTTTATACATAAACCCT 57.898 34.615 0.00 0.00 0.00 4.34
387 388 8.211629 ACCTGTCATCTTTATACATAAACCCTC 58.788 37.037 0.00 0.00 0.00 4.30
388 389 8.432805 CCTGTCATCTTTATACATAAACCCTCT 58.567 37.037 0.00 0.00 0.00 3.69
389 390 9.838339 CTGTCATCTTTATACATAAACCCTCTT 57.162 33.333 0.00 0.00 0.00 2.85
395 396 9.729281 TCTTTATACATAAACCCTCTTTTTCGT 57.271 29.630 0.00 0.00 0.00 3.85
396 397 9.983804 CTTTATACATAAACCCTCTTTTTCGTC 57.016 33.333 0.00 0.00 0.00 4.20
397 398 9.729281 TTTATACATAAACCCTCTTTTTCGTCT 57.271 29.630 0.00 0.00 0.00 4.18
398 399 5.941948 ACATAAACCCTCTTTTTCGTCTG 57.058 39.130 0.00 0.00 0.00 3.51
399 400 5.617252 ACATAAACCCTCTTTTTCGTCTGA 58.383 37.500 0.00 0.00 0.00 3.27
400 401 6.059484 ACATAAACCCTCTTTTTCGTCTGAA 58.941 36.000 0.00 0.00 0.00 3.02
401 402 6.544564 ACATAAACCCTCTTTTTCGTCTGAAA 59.455 34.615 0.00 0.00 42.21 2.69
402 403 7.230712 ACATAAACCCTCTTTTTCGTCTGAAAT 59.769 33.333 0.00 0.00 43.32 2.17
403 404 5.438761 AACCCTCTTTTTCGTCTGAAATG 57.561 39.130 0.00 0.00 43.32 2.32
404 405 4.714632 ACCCTCTTTTTCGTCTGAAATGA 58.285 39.130 0.00 0.00 43.32 2.57
405 406 5.130350 ACCCTCTTTTTCGTCTGAAATGAA 58.870 37.500 0.00 0.00 43.32 2.57
406 407 5.592688 ACCCTCTTTTTCGTCTGAAATGAAA 59.407 36.000 0.00 0.00 43.32 2.69
407 408 6.096282 ACCCTCTTTTTCGTCTGAAATGAAAA 59.904 34.615 8.68 8.68 46.32 2.29
415 416 6.408858 TCGTCTGAAATGAAAAGATAGTGC 57.591 37.500 0.00 0.00 0.00 4.40
416 417 6.166279 TCGTCTGAAATGAAAAGATAGTGCT 58.834 36.000 0.00 0.00 0.00 4.40
417 418 6.650807 TCGTCTGAAATGAAAAGATAGTGCTT 59.349 34.615 0.00 0.00 0.00 3.91
418 419 6.958193 CGTCTGAAATGAAAAGATAGTGCTTC 59.042 38.462 0.00 0.00 0.00 3.86
419 420 7.148507 CGTCTGAAATGAAAAGATAGTGCTTCT 60.149 37.037 0.00 0.00 0.00 2.85
420 421 7.961827 GTCTGAAATGAAAAGATAGTGCTTCTG 59.038 37.037 0.00 0.00 0.00 3.02
421 422 6.615088 TGAAATGAAAAGATAGTGCTTCTGC 58.385 36.000 0.00 0.00 40.20 4.26
422 423 5.573337 AATGAAAAGATAGTGCTTCTGCC 57.427 39.130 0.00 0.00 38.71 4.85
423 424 3.002791 TGAAAAGATAGTGCTTCTGCCG 58.997 45.455 0.00 0.00 38.71 5.69
424 425 2.029838 AAAGATAGTGCTTCTGCCGG 57.970 50.000 0.00 0.00 38.71 6.13
425 426 0.905357 AAGATAGTGCTTCTGCCGGT 59.095 50.000 1.90 0.00 38.71 5.28
426 427 0.905357 AGATAGTGCTTCTGCCGGTT 59.095 50.000 1.90 0.00 38.71 4.44
427 428 1.134670 AGATAGTGCTTCTGCCGGTTC 60.135 52.381 1.90 0.00 38.71 3.62
428 429 0.107654 ATAGTGCTTCTGCCGGTTCC 60.108 55.000 1.90 0.00 38.71 3.62
429 430 1.192146 TAGTGCTTCTGCCGGTTCCT 61.192 55.000 1.90 0.00 38.71 3.36
430 431 1.600916 GTGCTTCTGCCGGTTCCTT 60.601 57.895 1.90 0.00 38.71 3.36
431 432 0.321298 GTGCTTCTGCCGGTTCCTTA 60.321 55.000 1.90 0.00 38.71 2.69
432 433 0.398696 TGCTTCTGCCGGTTCCTTAA 59.601 50.000 1.90 0.00 38.71 1.85
433 434 1.202830 TGCTTCTGCCGGTTCCTTAAA 60.203 47.619 1.90 0.00 38.71 1.52
434 435 1.883926 GCTTCTGCCGGTTCCTTAAAA 59.116 47.619 1.90 0.00 0.00 1.52
1102 1108 3.853330 CGATGGCGACGGCAACAG 61.853 66.667 28.50 17.46 42.43 3.16
1199 1206 1.136774 GGCGGTTTCGAGGATTTGC 59.863 57.895 0.00 0.00 39.00 3.68
1249 1256 1.484240 AGGGTCTTGAGACTAGCATGC 59.516 52.381 10.51 10.51 44.20 4.06
1318 1325 4.400961 GGCTGCTCCTTCTGCCGT 62.401 66.667 0.00 0.00 40.41 5.68
1399 1406 3.650139 GTTTGTGTCTATGGAGTGTCGT 58.350 45.455 0.00 0.00 0.00 4.34
1426 1433 4.095610 CGATTTACTTTGTTCGATTGGGC 58.904 43.478 0.00 0.00 33.59 5.36
1538 1545 3.259374 TGGATCGAGATATTCTTGGCTCC 59.741 47.826 0.00 7.07 33.93 4.70
1959 1971 1.740025 GGAAATCAAACTCCTCTGCGG 59.260 52.381 0.00 0.00 0.00 5.69
2236 2256 4.278310 TCACTAGTAGCTGGCTATGTTCA 58.722 43.478 5.58 0.00 0.00 3.18
2338 2364 1.882912 TGCACTGATGAACCACAGAC 58.117 50.000 0.00 0.00 37.54 3.51
2358 2384 7.119699 CACAGACTTTAAACTGGAATATGCAGA 59.880 37.037 5.86 0.00 38.14 4.26
2675 2718 1.333636 GCCTTCTAGCCAGGAGAGCA 61.334 60.000 11.13 0.00 32.41 4.26
2956 3002 7.647715 TGCTAAAACAGAATTTGTGTAGCTTTC 59.352 33.333 16.35 0.00 45.56 2.62
3056 3102 6.014584 TGCATGAGACTAGGAAACTTTCTACA 60.015 38.462 0.00 0.00 43.67 2.74
3356 3404 1.023513 CAGCTTTCTCTGGGAAGCCG 61.024 60.000 5.52 0.00 35.16 5.52
3462 3511 5.127682 CAGCTTATTTAACAGCCATTCCCTT 59.872 40.000 0.00 0.00 36.62 3.95
3641 3766 9.091784 CATGCGGCTAATGATATATATATGGAC 57.908 37.037 10.03 0.00 0.00 4.02
3662 3787 8.635765 TGGACATTTGAGTTAAGAATTAGCTT 57.364 30.769 0.00 0.00 42.40 3.74
3685 3813 8.994170 GCTTCTACTTTTACTTCTCTTTCATGT 58.006 33.333 0.00 0.00 0.00 3.21
3713 3841 1.923356 TGGTCTCCTGAAAATTGCCC 58.077 50.000 0.00 0.00 0.00 5.36
3916 4045 6.939163 TCATTAATCCCCAAAACAATGGTTTG 59.061 34.615 16.26 16.26 46.20 2.93
4019 4215 3.378399 GAGCGTCCCTCTTGGCCTC 62.378 68.421 3.32 0.00 37.60 4.70
4100 4299 0.695462 CCCCACCTCATCCCTCATCA 60.695 60.000 0.00 0.00 0.00 3.07
4121 4320 5.848406 TCAGTGCCAAAATTAATCGGTTTT 58.152 33.333 0.00 0.00 0.00 2.43
4124 4323 6.018343 CAGTGCCAAAATTAATCGGTTTTGTT 60.018 34.615 9.84 0.00 41.43 2.83
4176 4375 3.222855 CCGCCCGAGCTCAGAGAT 61.223 66.667 15.40 0.00 36.60 2.75
4177 4376 2.027314 CGCCCGAGCTCAGAGATG 59.973 66.667 15.40 0.00 36.60 2.90
4178 4377 2.484928 CGCCCGAGCTCAGAGATGA 61.485 63.158 15.40 0.00 36.60 2.92
4179 4378 1.067250 GCCCGAGCTCAGAGATGAC 59.933 63.158 15.40 0.00 35.50 3.06
4180 4379 1.670949 GCCCGAGCTCAGAGATGACA 61.671 60.000 15.40 0.00 35.50 3.58
4181 4380 1.039068 CCCGAGCTCAGAGATGACAT 58.961 55.000 15.40 0.00 0.00 3.06
4182 4381 2.234143 CCCGAGCTCAGAGATGACATA 58.766 52.381 15.40 0.00 0.00 2.29
4183 4382 2.824936 CCCGAGCTCAGAGATGACATAT 59.175 50.000 15.40 0.00 0.00 1.78
4184 4383 4.013050 CCCGAGCTCAGAGATGACATATA 58.987 47.826 15.40 0.00 0.00 0.86
4185 4384 4.460731 CCCGAGCTCAGAGATGACATATAA 59.539 45.833 15.40 0.00 0.00 0.98
4186 4385 5.392919 CCCGAGCTCAGAGATGACATATAAG 60.393 48.000 15.40 0.00 0.00 1.73
4187 4386 5.094812 CGAGCTCAGAGATGACATATAAGC 58.905 45.833 15.40 4.29 0.00 3.09
4188 4387 5.404466 AGCTCAGAGATGACATATAAGCC 57.596 43.478 0.00 0.00 0.00 4.35
4189 4388 4.222588 AGCTCAGAGATGACATATAAGCCC 59.777 45.833 0.00 0.00 0.00 5.19
4190 4389 4.622695 GCTCAGAGATGACATATAAGCCCC 60.623 50.000 0.00 0.00 0.00 5.80
4191 4390 4.492646 TCAGAGATGACATATAAGCCCCA 58.507 43.478 0.00 0.00 0.00 4.96
4192 4391 4.907269 TCAGAGATGACATATAAGCCCCAA 59.093 41.667 0.00 0.00 0.00 4.12
4193 4392 5.549228 TCAGAGATGACATATAAGCCCCAAT 59.451 40.000 0.00 0.00 0.00 3.16
4194 4393 6.044754 TCAGAGATGACATATAAGCCCCAATT 59.955 38.462 0.00 0.00 0.00 2.32
4195 4394 6.718454 CAGAGATGACATATAAGCCCCAATTT 59.282 38.462 0.00 0.00 0.00 1.82
4196 4395 6.718454 AGAGATGACATATAAGCCCCAATTTG 59.282 38.462 0.00 0.00 0.00 2.32
4197 4396 5.776716 AGATGACATATAAGCCCCAATTTGG 59.223 40.000 8.56 8.56 37.25 3.28
4198 4397 4.877773 TGACATATAAGCCCCAATTTGGT 58.122 39.130 14.26 0.00 35.17 3.67
4199 4398 4.892934 TGACATATAAGCCCCAATTTGGTC 59.107 41.667 14.26 5.85 35.17 4.02
4200 4399 4.877773 ACATATAAGCCCCAATTTGGTCA 58.122 39.130 14.26 0.00 35.17 4.02
4201 4400 4.895297 ACATATAAGCCCCAATTTGGTCAG 59.105 41.667 14.26 4.14 35.17 3.51
4202 4401 2.230130 TAAGCCCCAATTTGGTCAGG 57.770 50.000 14.26 9.38 35.17 3.86
4203 4402 0.486879 AAGCCCCAATTTGGTCAGGA 59.513 50.000 14.26 0.00 35.17 3.86
4204 4403 0.251787 AGCCCCAATTTGGTCAGGAC 60.252 55.000 14.26 5.44 35.17 3.85
4205 4404 1.595093 GCCCCAATTTGGTCAGGACG 61.595 60.000 14.26 0.00 35.17 4.79
4206 4405 0.965363 CCCCAATTTGGTCAGGACGG 60.965 60.000 14.26 2.79 35.17 4.79
4207 4406 0.965363 CCCAATTTGGTCAGGACGGG 60.965 60.000 14.26 0.00 35.17 5.28
4208 4407 0.965363 CCAATTTGGTCAGGACGGGG 60.965 60.000 7.31 0.00 31.35 5.73
4209 4408 1.304134 AATTTGGTCAGGACGGGGC 60.304 57.895 0.00 0.00 0.00 5.80
4210 4409 2.781431 AATTTGGTCAGGACGGGGCC 62.781 60.000 0.00 0.00 0.00 5.80
4271 4470 3.680786 CGCCAGTCGAGGACACCA 61.681 66.667 0.00 0.00 41.67 4.17
4293 4492 3.453353 AGAATTAGCCTACTTTACCGCCA 59.547 43.478 0.00 0.00 0.00 5.69
4331 4530 2.937379 CTTCCTCCAGCTCCCATGCG 62.937 65.000 0.00 0.00 38.13 4.73
4338 4537 4.916293 GCTCCCATGCGGCATCGA 62.916 66.667 13.53 10.50 39.00 3.59
4390 4589 4.853142 ACCATCGCCGGCCTCCTA 62.853 66.667 23.46 1.12 0.00 2.94
4412 4611 2.439701 TCCAGTCCTAGTCGGGCG 60.440 66.667 0.00 0.00 44.20 6.13
4466 4665 2.483538 GCAAGGTGTTCAACAATTGCCT 60.484 45.455 22.68 10.22 42.50 4.75
4470 4669 5.806654 AGGTGTTCAACAATTGCCTTAAT 57.193 34.783 5.05 0.00 0.00 1.40
4486 4685 6.941857 TGCCTTAATGGTATTTCTTTTTCCC 58.058 36.000 0.00 0.00 38.35 3.97
4534 4734 6.420638 ACTGTCTCAAATTGATCATGGATGA 58.579 36.000 0.00 0.00 41.70 2.92
4569 4769 0.033504 GGAGAGTGCCTGTTGTTCGA 59.966 55.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.532523 TGCCTGAACATGCGATCAAA 58.467 45.000 0.00 0.00 0.00 2.69
1 2 1.402613 CATGCCTGAACATGCGATCAA 59.597 47.619 0.00 0.00 40.89 2.57
2 3 1.018910 CATGCCTGAACATGCGATCA 58.981 50.000 0.00 0.00 40.89 2.92
3 4 0.309922 CCATGCCTGAACATGCGATC 59.690 55.000 0.00 0.00 44.98 3.69
4 5 0.107066 TCCATGCCTGAACATGCGAT 60.107 50.000 0.00 0.00 44.98 4.58
5 6 1.026182 GTCCATGCCTGAACATGCGA 61.026 55.000 0.00 0.00 44.98 5.10
6 7 1.430632 GTCCATGCCTGAACATGCG 59.569 57.895 0.00 0.00 44.98 4.73
7 8 1.811860 GGTCCATGCCTGAACATGC 59.188 57.895 0.00 0.00 44.98 4.06
8 9 1.378882 CCGGTCCATGCCTGAACATG 61.379 60.000 0.00 0.00 45.74 3.21
9 10 1.077501 CCGGTCCATGCCTGAACAT 60.078 57.895 0.00 0.00 0.00 2.71
10 11 2.350895 CCGGTCCATGCCTGAACA 59.649 61.111 0.00 0.00 0.00 3.18
11 12 2.438434 CCCGGTCCATGCCTGAAC 60.438 66.667 0.00 0.00 0.00 3.18
12 13 3.727258 CCCCGGTCCATGCCTGAA 61.727 66.667 0.00 0.00 0.00 3.02
13 14 4.731853 TCCCCGGTCCATGCCTGA 62.732 66.667 0.00 0.00 0.00 3.86
14 15 4.181010 CTCCCCGGTCCATGCCTG 62.181 72.222 0.00 0.00 0.00 4.85
28 29 2.746277 ATGTTCGTTGGCGCCTCC 60.746 61.111 29.70 16.81 38.14 4.30
29 30 1.369091 ATCATGTTCGTTGGCGCCTC 61.369 55.000 29.70 19.22 38.14 4.70
30 31 1.377202 ATCATGTTCGTTGGCGCCT 60.377 52.632 29.70 0.07 38.14 5.52
31 32 1.226379 CATCATGTTCGTTGGCGCC 60.226 57.895 22.73 22.73 38.14 6.53
32 33 0.521242 GTCATCATGTTCGTTGGCGC 60.521 55.000 0.00 0.00 38.14 6.53
33 34 0.795698 TGTCATCATGTTCGTTGGCG 59.204 50.000 0.00 0.00 39.92 5.69
34 35 2.987413 TTGTCATCATGTTCGTTGGC 57.013 45.000 0.00 0.00 0.00 4.52
35 36 5.090757 CAGAATTGTCATCATGTTCGTTGG 58.909 41.667 0.00 0.00 0.00 3.77
36 37 4.556135 GCAGAATTGTCATCATGTTCGTTG 59.444 41.667 0.00 0.00 0.00 4.10
37 38 4.379813 GGCAGAATTGTCATCATGTTCGTT 60.380 41.667 0.00 0.00 0.00 3.85
38 39 3.127548 GGCAGAATTGTCATCATGTTCGT 59.872 43.478 0.00 0.00 0.00 3.85
39 40 3.376234 AGGCAGAATTGTCATCATGTTCG 59.624 43.478 0.00 0.00 0.00 3.95
40 41 4.201990 GGAGGCAGAATTGTCATCATGTTC 60.202 45.833 0.00 0.00 0.00 3.18
41 42 3.698040 GGAGGCAGAATTGTCATCATGTT 59.302 43.478 0.00 0.00 0.00 2.71
42 43 3.285484 GGAGGCAGAATTGTCATCATGT 58.715 45.455 0.00 0.00 0.00 3.21
43 44 2.621998 GGGAGGCAGAATTGTCATCATG 59.378 50.000 0.00 0.00 0.00 3.07
44 45 2.242965 TGGGAGGCAGAATTGTCATCAT 59.757 45.455 0.00 0.00 0.00 2.45
45 46 1.634973 TGGGAGGCAGAATTGTCATCA 59.365 47.619 0.00 0.00 0.00 3.07
46 47 2.425143 TGGGAGGCAGAATTGTCATC 57.575 50.000 0.00 0.00 0.00 2.92
47 48 2.662866 CATGGGAGGCAGAATTGTCAT 58.337 47.619 0.00 0.00 0.00 3.06
48 49 1.341285 CCATGGGAGGCAGAATTGTCA 60.341 52.381 2.85 0.00 0.00 3.58
49 50 1.396653 CCATGGGAGGCAGAATTGTC 58.603 55.000 2.85 0.00 0.00 3.18
50 51 0.032813 CCCATGGGAGGCAGAATTGT 60.033 55.000 28.27 0.00 37.50 2.71
51 52 0.259647 TCCCATGGGAGGCAGAATTG 59.740 55.000 30.62 0.00 39.76 2.32
52 53 2.727336 TCCCATGGGAGGCAGAATT 58.273 52.632 30.62 0.00 39.76 2.17
53 54 4.526102 TCCCATGGGAGGCAGAAT 57.474 55.556 30.62 0.00 39.76 2.40
61 62 3.105785 TCGGAGACTCCCATGGGA 58.894 61.111 31.83 31.83 42.90 4.37
72 73 1.753078 CGATCCCACCAGTCGGAGA 60.753 63.158 0.00 0.00 35.59 3.71
73 74 2.808315 CGATCCCACCAGTCGGAG 59.192 66.667 0.00 0.00 35.59 4.63
76 77 3.432051 GAGCCGATCCCACCAGTCG 62.432 68.421 0.00 0.00 35.29 4.18
77 78 1.690219 ATGAGCCGATCCCACCAGTC 61.690 60.000 0.00 0.00 0.00 3.51
78 79 1.690219 GATGAGCCGATCCCACCAGT 61.690 60.000 0.00 0.00 0.00 4.00
79 80 1.070445 GATGAGCCGATCCCACCAG 59.930 63.158 0.00 0.00 0.00 4.00
80 81 1.383109 AGATGAGCCGATCCCACCA 60.383 57.895 0.00 0.00 0.00 4.17
81 82 1.070445 CAGATGAGCCGATCCCACC 59.930 63.158 0.00 0.00 0.00 4.61
82 83 0.249657 GACAGATGAGCCGATCCCAC 60.250 60.000 0.00 0.00 0.00 4.61
83 84 1.402896 GGACAGATGAGCCGATCCCA 61.403 60.000 0.00 0.00 0.00 4.37
84 85 1.369321 GGACAGATGAGCCGATCCC 59.631 63.158 0.00 0.00 0.00 3.85
85 86 1.369321 GGGACAGATGAGCCGATCC 59.631 63.158 0.00 0.00 0.00 3.36
86 87 1.118356 AGGGGACAGATGAGCCGATC 61.118 60.000 0.00 0.00 0.00 3.69
87 88 1.074926 AGGGGACAGATGAGCCGAT 60.075 57.895 0.00 0.00 0.00 4.18
88 89 2.060383 CAGGGGACAGATGAGCCGA 61.060 63.158 0.00 0.00 0.00 5.54
89 90 2.303549 GACAGGGGACAGATGAGCCG 62.304 65.000 0.00 0.00 0.00 5.52
90 91 1.524482 GACAGGGGACAGATGAGCC 59.476 63.158 0.00 0.00 0.00 4.70
91 92 1.267574 TGGACAGGGGACAGATGAGC 61.268 60.000 0.00 0.00 0.00 4.26
92 93 1.209019 CTTGGACAGGGGACAGATGAG 59.791 57.143 0.00 0.00 0.00 2.90
93 94 1.279496 CTTGGACAGGGGACAGATGA 58.721 55.000 0.00 0.00 0.00 2.92
94 95 0.254178 CCTTGGACAGGGGACAGATG 59.746 60.000 0.00 0.00 39.39 2.90
95 96 0.119155 TCCTTGGACAGGGGACAGAT 59.881 55.000 0.32 0.00 44.12 2.90
96 97 0.836400 GTCCTTGGACAGGGGACAGA 60.836 60.000 14.34 0.00 46.14 3.41
97 98 1.679898 GTCCTTGGACAGGGGACAG 59.320 63.158 14.34 0.00 46.14 3.51
98 99 2.214216 CGTCCTTGGACAGGGGACA 61.214 63.158 18.51 0.00 46.93 4.02
99 100 1.477685 TTCGTCCTTGGACAGGGGAC 61.478 60.000 18.51 13.09 44.12 4.46
100 101 0.765135 TTTCGTCCTTGGACAGGGGA 60.765 55.000 18.51 5.93 44.12 4.81
101 102 0.321653 CTTTCGTCCTTGGACAGGGG 60.322 60.000 18.51 3.77 44.12 4.79
102 103 0.685097 TCTTTCGTCCTTGGACAGGG 59.315 55.000 18.51 4.10 44.12 4.45
103 104 1.797025 GTCTTTCGTCCTTGGACAGG 58.203 55.000 18.51 4.75 45.64 4.00
104 105 1.419374 CGTCTTTCGTCCTTGGACAG 58.581 55.000 18.51 11.59 34.52 3.51
105 106 0.599204 GCGTCTTTCGTCCTTGGACA 60.599 55.000 18.51 4.59 42.13 4.02
106 107 1.289800 GGCGTCTTTCGTCCTTGGAC 61.290 60.000 9.62 9.62 42.13 4.02
107 108 1.005394 GGCGTCTTTCGTCCTTGGA 60.005 57.895 0.00 0.00 42.13 3.53
108 109 2.380410 CGGCGTCTTTCGTCCTTGG 61.380 63.158 0.00 0.00 41.52 3.61
109 110 2.380410 CCGGCGTCTTTCGTCCTTG 61.380 63.158 6.01 0.00 41.52 3.61
110 111 2.048503 CCGGCGTCTTTCGTCCTT 60.049 61.111 6.01 0.00 41.52 3.36
111 112 4.736896 GCCGGCGTCTTTCGTCCT 62.737 66.667 12.58 0.00 41.52 3.85
125 126 2.879462 GAAGTGACCGCTACGCCG 60.879 66.667 0.00 0.00 0.00 6.46
126 127 2.508663 GGAAGTGACCGCTACGCC 60.509 66.667 0.00 0.00 0.00 5.68
127 128 1.516603 GAGGAAGTGACCGCTACGC 60.517 63.158 0.00 0.00 34.73 4.42
128 129 1.063764 GTAGAGGAAGTGACCGCTACG 59.936 57.143 11.41 0.00 46.81 3.51
130 131 2.089980 GTGTAGAGGAAGTGACCGCTA 58.910 52.381 0.00 0.00 40.34 4.26
131 132 0.889306 GTGTAGAGGAAGTGACCGCT 59.111 55.000 0.00 0.00 42.32 5.52
132 133 0.108756 GGTGTAGAGGAAGTGACCGC 60.109 60.000 0.00 0.00 34.73 5.68
133 134 1.254026 TGGTGTAGAGGAAGTGACCG 58.746 55.000 0.00 0.00 34.73 4.79
134 135 3.983044 AATGGTGTAGAGGAAGTGACC 57.017 47.619 0.00 0.00 0.00 4.02
135 136 4.003648 CCAAATGGTGTAGAGGAAGTGAC 58.996 47.826 0.00 0.00 0.00 3.67
136 137 3.907474 TCCAAATGGTGTAGAGGAAGTGA 59.093 43.478 0.00 0.00 36.34 3.41
137 138 4.286297 TCCAAATGGTGTAGAGGAAGTG 57.714 45.455 0.00 0.00 36.34 3.16
138 139 4.993705 TTCCAAATGGTGTAGAGGAAGT 57.006 40.909 0.00 0.00 36.34 3.01
139 140 7.443575 CAGATATTCCAAATGGTGTAGAGGAAG 59.556 40.741 0.00 0.00 38.41 3.46
140 141 7.282585 CAGATATTCCAAATGGTGTAGAGGAA 58.717 38.462 0.00 0.00 39.24 3.36
141 142 6.183361 CCAGATATTCCAAATGGTGTAGAGGA 60.183 42.308 0.00 0.00 36.34 3.71
142 143 6.000219 CCAGATATTCCAAATGGTGTAGAGG 59.000 44.000 0.00 0.00 36.34 3.69
143 144 6.830912 TCCAGATATTCCAAATGGTGTAGAG 58.169 40.000 0.00 0.00 36.34 2.43
144 145 6.823286 TCCAGATATTCCAAATGGTGTAGA 57.177 37.500 0.00 0.00 36.34 2.59
145 146 6.488006 CCTTCCAGATATTCCAAATGGTGTAG 59.512 42.308 0.00 0.00 36.34 2.74
146 147 6.159575 TCCTTCCAGATATTCCAAATGGTGTA 59.840 38.462 0.00 0.00 36.34 2.90
147 148 5.044179 TCCTTCCAGATATTCCAAATGGTGT 60.044 40.000 0.00 0.00 36.34 4.16
148 149 5.448654 TCCTTCCAGATATTCCAAATGGTG 58.551 41.667 0.00 0.00 36.34 4.17
149 150 5.699143 CTCCTTCCAGATATTCCAAATGGT 58.301 41.667 0.00 0.00 36.34 3.55
150 151 4.522022 GCTCCTTCCAGATATTCCAAATGG 59.478 45.833 0.00 0.00 0.00 3.16
151 152 4.214971 CGCTCCTTCCAGATATTCCAAATG 59.785 45.833 0.00 0.00 0.00 2.32
152 153 4.392940 CGCTCCTTCCAGATATTCCAAAT 58.607 43.478 0.00 0.00 0.00 2.32
153 154 3.808728 CGCTCCTTCCAGATATTCCAAA 58.191 45.455 0.00 0.00 0.00 3.28
154 155 2.485479 GCGCTCCTTCCAGATATTCCAA 60.485 50.000 0.00 0.00 0.00 3.53
155 156 1.070758 GCGCTCCTTCCAGATATTCCA 59.929 52.381 0.00 0.00 0.00 3.53
156 157 1.070758 TGCGCTCCTTCCAGATATTCC 59.929 52.381 9.73 0.00 0.00 3.01
157 158 2.533266 TGCGCTCCTTCCAGATATTC 57.467 50.000 9.73 0.00 0.00 1.75
158 159 2.565841 GTTGCGCTCCTTCCAGATATT 58.434 47.619 9.73 0.00 0.00 1.28
159 160 1.202698 GGTTGCGCTCCTTCCAGATAT 60.203 52.381 9.73 0.00 0.00 1.63
160 161 0.178068 GGTTGCGCTCCTTCCAGATA 59.822 55.000 9.73 0.00 0.00 1.98
161 162 1.078143 GGTTGCGCTCCTTCCAGAT 60.078 57.895 9.73 0.00 0.00 2.90
162 163 2.347490 GGTTGCGCTCCTTCCAGA 59.653 61.111 9.73 0.00 0.00 3.86
163 164 3.121030 CGGTTGCGCTCCTTCCAG 61.121 66.667 9.73 0.00 0.00 3.86
170 171 4.884257 TATCCGGCGGTTGCGCTC 62.884 66.667 27.32 1.18 44.10 5.03
171 172 3.750373 AATATCCGGCGGTTGCGCT 62.750 57.895 27.32 7.40 44.10 5.92
172 173 3.236618 GAATATCCGGCGGTTGCGC 62.237 63.158 27.32 10.34 44.10 6.09
173 174 1.227999 ATGAATATCCGGCGGTTGCG 61.228 55.000 27.32 0.00 44.10 4.85
174 175 0.517316 GATGAATATCCGGCGGTTGC 59.483 55.000 27.32 11.39 41.71 4.17
175 176 0.790207 CGATGAATATCCGGCGGTTG 59.210 55.000 27.32 4.40 0.00 3.77
176 177 0.320421 CCGATGAATATCCGGCGGTT 60.320 55.000 27.32 20.77 34.45 4.44
177 178 1.292223 CCGATGAATATCCGGCGGT 59.708 57.895 27.32 15.73 34.45 5.68
178 179 2.100631 GCCGATGAATATCCGGCGG 61.101 63.158 22.51 22.51 40.46 6.13
179 180 1.374125 TGCCGATGAATATCCGGCG 60.374 57.895 18.17 0.00 46.53 6.46
180 181 1.298859 GGTGCCGATGAATATCCGGC 61.299 60.000 16.88 16.88 45.19 6.13
181 182 0.673644 GGGTGCCGATGAATATCCGG 60.674 60.000 0.00 0.00 33.19 5.14
182 183 2.840974 GGGTGCCGATGAATATCCG 58.159 57.895 0.00 0.00 0.00 4.18
196 197 3.314331 AGGTGAGTGAGGCGGGTG 61.314 66.667 0.00 0.00 0.00 4.61
197 198 3.314331 CAGGTGAGTGAGGCGGGT 61.314 66.667 0.00 0.00 0.00 5.28
198 199 4.087892 CCAGGTGAGTGAGGCGGG 62.088 72.222 0.00 0.00 0.00 6.13
199 200 2.997315 TCCAGGTGAGTGAGGCGG 60.997 66.667 0.00 0.00 0.00 6.13
200 201 2.575993 CTCCAGGTGAGTGAGGCG 59.424 66.667 0.00 0.00 36.27 5.52
201 202 2.985456 CCTCCAGGTGAGTGAGGC 59.015 66.667 0.00 0.00 39.29 4.70
212 213 4.864334 GATGGCCGCCACCTCCAG 62.864 72.222 16.16 0.00 35.80 3.86
228 229 1.142474 TCTTATATCGTCGAGCGCGA 58.858 50.000 12.10 8.97 45.71 5.87
229 230 1.946521 TTCTTATATCGTCGAGCGCG 58.053 50.000 2.41 2.41 41.07 6.86
230 231 2.026978 GCATTCTTATATCGTCGAGCGC 59.973 50.000 0.00 0.00 41.07 5.92
231 232 2.273973 CGCATTCTTATATCGTCGAGCG 59.726 50.000 0.00 3.19 43.01 5.03
232 233 2.594654 CCGCATTCTTATATCGTCGAGC 59.405 50.000 0.00 0.00 0.00 5.03
233 234 3.172050 CCCGCATTCTTATATCGTCGAG 58.828 50.000 0.00 0.00 0.00 4.04
234 235 2.670229 GCCCGCATTCTTATATCGTCGA 60.670 50.000 0.00 0.00 0.00 4.20
235 236 1.654105 GCCCGCATTCTTATATCGTCG 59.346 52.381 0.00 0.00 0.00 5.12
236 237 2.960819 AGCCCGCATTCTTATATCGTC 58.039 47.619 0.00 0.00 0.00 4.20
237 238 3.067106 CAAGCCCGCATTCTTATATCGT 58.933 45.455 0.00 0.00 0.00 3.73
238 239 2.159653 GCAAGCCCGCATTCTTATATCG 60.160 50.000 0.00 0.00 0.00 2.92
239 240 2.159653 CGCAAGCCCGCATTCTTATATC 60.160 50.000 0.00 0.00 0.00 1.63
240 241 1.806542 CGCAAGCCCGCATTCTTATAT 59.193 47.619 0.00 0.00 0.00 0.86
241 242 1.225855 CGCAAGCCCGCATTCTTATA 58.774 50.000 0.00 0.00 0.00 0.98
242 243 2.024918 CGCAAGCCCGCATTCTTAT 58.975 52.632 0.00 0.00 0.00 1.73
243 244 3.496711 CGCAAGCCCGCATTCTTA 58.503 55.556 0.00 0.00 0.00 2.10
261 262 1.833934 ACTTGTGCCCTGCCAAAGG 60.834 57.895 0.00 0.00 46.94 3.11
262 263 1.108727 TCACTTGTGCCCTGCCAAAG 61.109 55.000 0.00 0.00 0.00 2.77
263 264 1.076412 TCACTTGTGCCCTGCCAAA 60.076 52.632 0.00 0.00 0.00 3.28
264 265 1.827789 GTCACTTGTGCCCTGCCAA 60.828 57.895 0.00 0.00 0.00 4.52
265 266 2.203337 GTCACTTGTGCCCTGCCA 60.203 61.111 0.00 0.00 0.00 4.92
266 267 3.357079 CGTCACTTGTGCCCTGCC 61.357 66.667 0.00 0.00 0.00 4.85
267 268 2.280797 TCGTCACTTGTGCCCTGC 60.281 61.111 0.00 0.00 0.00 4.85
268 269 1.961277 GGTCGTCACTTGTGCCCTG 60.961 63.158 0.00 0.00 0.00 4.45
269 270 2.426023 GGTCGTCACTTGTGCCCT 59.574 61.111 0.00 0.00 0.00 5.19
270 271 3.041940 CGGTCGTCACTTGTGCCC 61.042 66.667 0.00 0.00 0.00 5.36
271 272 3.041940 CCGGTCGTCACTTGTGCC 61.042 66.667 0.00 0.00 0.00 5.01
272 273 3.712881 GCCGGTCGTCACTTGTGC 61.713 66.667 1.90 0.00 0.00 4.57
273 274 1.227999 AATGCCGGTCGTCACTTGTG 61.228 55.000 1.90 0.00 0.00 3.33
274 275 1.070786 AATGCCGGTCGTCACTTGT 59.929 52.632 1.90 0.00 0.00 3.16
275 276 1.497278 CAATGCCGGTCGTCACTTG 59.503 57.895 1.90 0.00 0.00 3.16
276 277 1.671054 CCAATGCCGGTCGTCACTT 60.671 57.895 1.90 0.00 0.00 3.16
277 278 2.047274 CCAATGCCGGTCGTCACT 60.047 61.111 1.90 0.00 0.00 3.41
278 279 3.124921 CCCAATGCCGGTCGTCAC 61.125 66.667 1.90 0.00 0.00 3.67
279 280 3.632080 ACCCAATGCCGGTCGTCA 61.632 61.111 1.90 0.00 0.00 4.35
280 281 2.869503 ATCACCCAATGCCGGTCGTC 62.870 60.000 1.90 0.00 0.00 4.20
281 282 2.478335 AATCACCCAATGCCGGTCGT 62.478 55.000 1.90 0.00 0.00 4.34
282 283 1.312371 AAATCACCCAATGCCGGTCG 61.312 55.000 1.90 0.00 0.00 4.79
283 284 0.173255 CAAATCACCCAATGCCGGTC 59.827 55.000 1.90 0.00 0.00 4.79
284 285 1.257055 CCAAATCACCCAATGCCGGT 61.257 55.000 1.90 0.00 0.00 5.28
285 286 1.257055 ACCAAATCACCCAATGCCGG 61.257 55.000 0.00 0.00 0.00 6.13
286 287 0.607620 AACCAAATCACCCAATGCCG 59.392 50.000 0.00 0.00 0.00 5.69
287 288 1.622811 TGAACCAAATCACCCAATGCC 59.377 47.619 0.00 0.00 0.00 4.40
288 289 2.687370 GTGAACCAAATCACCCAATGC 58.313 47.619 0.00 0.00 43.11 3.56
296 297 5.414454 GTGGTATGCTAAGTGAACCAAATCA 59.586 40.000 0.00 0.00 41.65 2.57
297 298 5.414454 TGTGGTATGCTAAGTGAACCAAATC 59.586 40.000 0.00 0.00 41.65 2.17
298 299 5.321102 TGTGGTATGCTAAGTGAACCAAAT 58.679 37.500 0.00 0.00 41.65 2.32
299 300 4.720046 TGTGGTATGCTAAGTGAACCAAA 58.280 39.130 0.00 0.00 41.65 3.28
300 301 4.359434 TGTGGTATGCTAAGTGAACCAA 57.641 40.909 0.00 0.00 41.65 3.67
301 302 4.069304 GTTGTGGTATGCTAAGTGAACCA 58.931 43.478 0.00 0.00 37.88 3.67
302 303 3.124636 CGTTGTGGTATGCTAAGTGAACC 59.875 47.826 0.00 0.00 0.00 3.62
303 304 3.124636 CCGTTGTGGTATGCTAAGTGAAC 59.875 47.826 0.00 0.00 0.00 3.18
304 305 3.331150 CCGTTGTGGTATGCTAAGTGAA 58.669 45.455 0.00 0.00 0.00 3.18
305 306 2.967362 CCGTTGTGGTATGCTAAGTGA 58.033 47.619 0.00 0.00 0.00 3.41
317 318 3.946606 ACCCTTATAAGAACCGTTGTGG 58.053 45.455 14.28 5.68 46.41 4.17
318 319 5.390145 CGAAACCCTTATAAGAACCGTTGTG 60.390 44.000 14.28 3.99 0.00 3.33
319 320 4.692155 CGAAACCCTTATAAGAACCGTTGT 59.308 41.667 14.28 2.94 0.00 3.32
320 321 4.692155 ACGAAACCCTTATAAGAACCGTTG 59.308 41.667 14.28 2.30 0.00 4.10
321 322 4.898320 ACGAAACCCTTATAAGAACCGTT 58.102 39.130 14.28 7.52 0.00 4.44
322 323 4.021192 TGACGAAACCCTTATAAGAACCGT 60.021 41.667 14.28 13.95 0.00 4.83
323 324 4.497300 TGACGAAACCCTTATAAGAACCG 58.503 43.478 14.28 11.28 0.00 4.44
324 325 4.874396 CCTGACGAAACCCTTATAAGAACC 59.126 45.833 14.28 0.00 0.00 3.62
325 326 5.485620 ACCTGACGAAACCCTTATAAGAAC 58.514 41.667 14.28 0.31 0.00 3.01
326 327 5.750352 ACCTGACGAAACCCTTATAAGAA 57.250 39.130 14.28 0.00 0.00 2.52
327 328 5.750352 AACCTGACGAAACCCTTATAAGA 57.250 39.130 14.28 0.00 0.00 2.10
328 329 6.128090 GGAAAACCTGACGAAACCCTTATAAG 60.128 42.308 5.43 5.43 0.00 1.73
329 330 5.706833 GGAAAACCTGACGAAACCCTTATAA 59.293 40.000 0.00 0.00 0.00 0.98
330 331 5.247862 GGAAAACCTGACGAAACCCTTATA 58.752 41.667 0.00 0.00 0.00 0.98
331 332 4.077108 GGAAAACCTGACGAAACCCTTAT 58.923 43.478 0.00 0.00 0.00 1.73
332 333 3.479489 GGAAAACCTGACGAAACCCTTA 58.521 45.455 0.00 0.00 0.00 2.69
333 334 2.304092 GGAAAACCTGACGAAACCCTT 58.696 47.619 0.00 0.00 0.00 3.95
334 335 1.478105 GGGAAAACCTGACGAAACCCT 60.478 52.381 0.00 0.00 35.85 4.34
335 336 0.956633 GGGAAAACCTGACGAAACCC 59.043 55.000 0.00 0.00 35.85 4.11
336 337 1.682740 TGGGAAAACCTGACGAAACC 58.317 50.000 0.00 0.00 41.11 3.27
337 338 3.786516 TTTGGGAAAACCTGACGAAAC 57.213 42.857 0.00 0.00 41.11 2.78
338 339 4.803098 TTTTTGGGAAAACCTGACGAAA 57.197 36.364 0.00 0.00 41.11 3.46
359 360 9.185680 GGGTTTATGTATAAAGATGACAGGTTT 57.814 33.333 0.00 0.00 33.31 3.27
360 361 8.557450 AGGGTTTATGTATAAAGATGACAGGTT 58.443 33.333 0.00 0.00 33.31 3.50
361 362 8.102484 AGGGTTTATGTATAAAGATGACAGGT 57.898 34.615 0.00 0.00 33.31 4.00
362 363 8.432805 AGAGGGTTTATGTATAAAGATGACAGG 58.567 37.037 0.00 0.00 33.31 4.00
363 364 9.838339 AAGAGGGTTTATGTATAAAGATGACAG 57.162 33.333 0.00 0.00 33.31 3.51
369 370 9.729281 ACGAAAAAGAGGGTTTATGTATAAAGA 57.271 29.630 0.00 0.00 33.31 2.52
370 371 9.983804 GACGAAAAAGAGGGTTTATGTATAAAG 57.016 33.333 0.00 0.00 33.31 1.85
371 372 9.729281 AGACGAAAAAGAGGGTTTATGTATAAA 57.271 29.630 0.00 0.00 0.00 1.40
372 373 9.158233 CAGACGAAAAAGAGGGTTTATGTATAA 57.842 33.333 0.00 0.00 0.00 0.98
373 374 8.533657 TCAGACGAAAAAGAGGGTTTATGTATA 58.466 33.333 0.00 0.00 0.00 1.47
374 375 7.391620 TCAGACGAAAAAGAGGGTTTATGTAT 58.608 34.615 0.00 0.00 0.00 2.29
375 376 6.761312 TCAGACGAAAAAGAGGGTTTATGTA 58.239 36.000 0.00 0.00 0.00 2.29
376 377 5.617252 TCAGACGAAAAAGAGGGTTTATGT 58.383 37.500 0.00 0.00 0.00 2.29
377 378 6.554334 TTCAGACGAAAAAGAGGGTTTATG 57.446 37.500 0.00 0.00 0.00 1.90
378 379 7.447238 TCATTTCAGACGAAAAAGAGGGTTTAT 59.553 33.333 0.00 0.00 44.12 1.40
379 380 6.768861 TCATTTCAGACGAAAAAGAGGGTTTA 59.231 34.615 0.00 0.00 44.12 2.01
380 381 5.592688 TCATTTCAGACGAAAAAGAGGGTTT 59.407 36.000 0.00 0.00 44.12 3.27
381 382 5.130350 TCATTTCAGACGAAAAAGAGGGTT 58.870 37.500 0.00 0.00 44.12 4.11
382 383 4.714632 TCATTTCAGACGAAAAAGAGGGT 58.285 39.130 0.00 0.00 44.12 4.34
383 384 5.689383 TTCATTTCAGACGAAAAAGAGGG 57.311 39.130 0.00 0.00 44.12 4.30
384 385 7.417612 TCTTTTCATTTCAGACGAAAAAGAGG 58.582 34.615 4.47 0.00 44.12 3.69
387 388 9.884465 ACTATCTTTTCATTTCAGACGAAAAAG 57.116 29.630 0.00 0.00 44.12 2.27
388 389 9.663904 CACTATCTTTTCATTTCAGACGAAAAA 57.336 29.630 0.00 0.00 44.12 1.94
389 390 7.803189 GCACTATCTTTTCATTTCAGACGAAAA 59.197 33.333 0.00 0.00 44.12 2.29
390 391 7.173218 AGCACTATCTTTTCATTTCAGACGAAA 59.827 33.333 0.00 0.00 44.99 3.46
391 392 6.650807 AGCACTATCTTTTCATTTCAGACGAA 59.349 34.615 0.00 0.00 0.00 3.85
392 393 6.166279 AGCACTATCTTTTCATTTCAGACGA 58.834 36.000 0.00 0.00 0.00 4.20
393 394 6.414408 AGCACTATCTTTTCATTTCAGACG 57.586 37.500 0.00 0.00 0.00 4.18
394 395 7.961827 CAGAAGCACTATCTTTTCATTTCAGAC 59.038 37.037 0.00 0.00 0.00 3.51
395 396 7.361542 GCAGAAGCACTATCTTTTCATTTCAGA 60.362 37.037 0.00 0.00 41.58 3.27
396 397 6.746364 GCAGAAGCACTATCTTTTCATTTCAG 59.254 38.462 0.00 0.00 41.58 3.02
397 398 6.349611 GGCAGAAGCACTATCTTTTCATTTCA 60.350 38.462 0.00 0.00 44.61 2.69
398 399 6.032717 GGCAGAAGCACTATCTTTTCATTTC 58.967 40.000 0.00 0.00 44.61 2.17
399 400 5.392380 CGGCAGAAGCACTATCTTTTCATTT 60.392 40.000 0.00 0.00 44.61 2.32
400 401 4.095483 CGGCAGAAGCACTATCTTTTCATT 59.905 41.667 0.00 0.00 44.61 2.57
401 402 3.624861 CGGCAGAAGCACTATCTTTTCAT 59.375 43.478 0.00 0.00 44.61 2.57
402 403 3.002791 CGGCAGAAGCACTATCTTTTCA 58.997 45.455 0.00 0.00 44.61 2.69
403 404 2.352960 CCGGCAGAAGCACTATCTTTTC 59.647 50.000 0.00 0.00 44.61 2.29
404 405 2.290323 ACCGGCAGAAGCACTATCTTTT 60.290 45.455 0.00 0.00 44.61 2.27
405 406 1.279271 ACCGGCAGAAGCACTATCTTT 59.721 47.619 0.00 0.00 44.61 2.52
406 407 0.905357 ACCGGCAGAAGCACTATCTT 59.095 50.000 0.00 0.00 44.61 2.40
407 408 0.905357 AACCGGCAGAAGCACTATCT 59.095 50.000 0.00 0.00 44.61 1.98
408 409 1.291132 GAACCGGCAGAAGCACTATC 58.709 55.000 0.00 0.00 44.61 2.08
409 410 0.107654 GGAACCGGCAGAAGCACTAT 60.108 55.000 0.00 0.00 44.61 2.12
410 411 1.192146 AGGAACCGGCAGAAGCACTA 61.192 55.000 0.00 0.00 44.61 2.74
411 412 2.032681 GGAACCGGCAGAAGCACT 59.967 61.111 0.00 0.00 44.61 4.40
412 413 0.321298 TAAGGAACCGGCAGAAGCAC 60.321 55.000 0.00 0.00 44.61 4.40
413 414 0.398696 TTAAGGAACCGGCAGAAGCA 59.601 50.000 0.00 0.00 44.61 3.91
414 415 1.530323 TTTAAGGAACCGGCAGAAGC 58.470 50.000 0.00 0.00 41.10 3.86
434 435 1.591327 CGCCGCTTTGCCACTTTTT 60.591 52.632 0.00 0.00 0.00 1.94
513 514 0.814457 TGCGGAATGGAAAATTCGGG 59.186 50.000 7.47 0.00 0.00 5.14
1102 1108 3.107661 GCAGCACGCACATTTGGC 61.108 61.111 0.00 0.00 41.79 4.52
1199 1206 0.470833 AGTCGATCCCCTCCATCCAG 60.471 60.000 0.00 0.00 0.00 3.86
1249 1256 2.865670 GCAGATTCTAGTCCCTCATGCG 60.866 54.545 0.00 0.00 0.00 4.73
1318 1325 4.451900 GCAAGATCCCTCTATTTTCGGAA 58.548 43.478 0.00 0.00 0.00 4.30
1399 1406 7.148540 CCCAATCGAACAAAGTAAATCGAGTTA 60.149 37.037 0.32 0.32 46.09 2.24
1426 1433 3.461773 ATCGGTGCAGGAGGACGG 61.462 66.667 0.00 0.00 36.89 4.79
1538 1545 1.144057 CTCCCATTTCGACCCCTCG 59.856 63.158 0.00 0.00 41.65 4.63
1796 1805 6.151648 CAGTTCTGACATGGATGTTGGTTATT 59.848 38.462 0.00 0.00 41.95 1.40
1872 1881 0.511221 CCCACACGAACTTAGCAACG 59.489 55.000 0.00 0.00 0.00 4.10
1959 1971 3.569200 AAAGAAGGCCCGGCAGTCC 62.569 63.158 12.58 0.00 0.00 3.85
2133 2153 3.323775 AACCTCAGAAGGGTACTCCAAA 58.676 45.455 0.00 0.00 42.48 3.28
2614 2649 9.467258 GAACTTGTCATGATTCAAAAAGAATGA 57.533 29.630 0.00 0.00 46.76 2.57
2771 2814 1.807814 AGACTGGAAACCCTGACAGT 58.192 50.000 0.93 0.00 45.99 3.55
2956 3002 5.936956 AGAAAGAACAAGTGAATAGCTGGAG 59.063 40.000 0.00 0.00 0.00 3.86
2967 3013 8.253810 TCCTGTCATAGATAGAAAGAACAAGTG 58.746 37.037 0.00 0.00 0.00 3.16
3356 3404 3.507233 TGATTCTTGTCTTGCCAATGACC 59.493 43.478 5.11 0.00 32.67 4.02
3462 3511 6.409524 AGACCAAATTCTTGAAAGCAATCA 57.590 33.333 0.00 0.00 34.14 2.57
3685 3813 7.094205 GCAATTTTCAGGAGACCATAAGAAGAA 60.094 37.037 0.00 0.00 0.00 2.52
3686 3814 6.375455 GCAATTTTCAGGAGACCATAAGAAGA 59.625 38.462 0.00 0.00 0.00 2.87
3687 3815 6.405176 GGCAATTTTCAGGAGACCATAAGAAG 60.405 42.308 0.00 0.00 0.00 2.85
3713 3841 7.035004 ACCATAATTTGAATGTTGAACCATCG 58.965 34.615 0.00 0.00 0.00 3.84
3871 4000 1.636003 ACTTTTGGGGGAAGAGCTAGG 59.364 52.381 0.00 0.00 0.00 3.02
4033 4229 0.754472 GTGGGGGATGCAAATGATGG 59.246 55.000 0.00 0.00 0.00 3.51
4076 4272 1.307866 GGGATGAGGTGGGGGAGAA 60.308 63.158 0.00 0.00 0.00 2.87
4100 4299 5.606505 ACAAAACCGATTAATTTTGGCACT 58.393 33.333 13.70 0.00 45.80 4.40
4165 4364 5.410067 GGCTTATATGTCATCTCTGAGCTC 58.590 45.833 6.82 6.82 30.18 4.09
4166 4365 4.222588 GGGCTTATATGTCATCTCTGAGCT 59.777 45.833 0.00 0.00 30.18 4.09
4167 4366 4.502962 GGGCTTATATGTCATCTCTGAGC 58.497 47.826 0.00 0.00 30.18 4.26
4168 4367 4.529769 TGGGGCTTATATGTCATCTCTGAG 59.470 45.833 0.00 0.00 30.18 3.35
4169 4368 4.492646 TGGGGCTTATATGTCATCTCTGA 58.507 43.478 0.00 0.00 0.00 3.27
4170 4369 4.897509 TGGGGCTTATATGTCATCTCTG 57.102 45.455 0.00 0.00 0.00 3.35
4171 4370 6.460103 AATTGGGGCTTATATGTCATCTCT 57.540 37.500 0.00 0.00 0.00 3.10
4172 4371 6.071728 CCAAATTGGGGCTTATATGTCATCTC 60.072 42.308 3.60 0.00 32.67 2.75
4173 4372 5.776716 CCAAATTGGGGCTTATATGTCATCT 59.223 40.000 3.60 0.00 32.67 2.90
4174 4373 5.539955 ACCAAATTGGGGCTTATATGTCATC 59.460 40.000 17.27 0.00 43.37 2.92
4175 4374 5.466819 ACCAAATTGGGGCTTATATGTCAT 58.533 37.500 17.27 0.00 43.37 3.06
4176 4375 4.877773 ACCAAATTGGGGCTTATATGTCA 58.122 39.130 17.27 0.00 43.37 3.58
4177 4376 4.892934 TGACCAAATTGGGGCTTATATGTC 59.107 41.667 17.27 1.19 43.37 3.06
4178 4377 4.877773 TGACCAAATTGGGGCTTATATGT 58.122 39.130 17.27 0.00 43.37 2.29
4179 4378 4.281688 CCTGACCAAATTGGGGCTTATATG 59.718 45.833 17.27 0.00 43.37 1.78
4180 4379 4.169856 TCCTGACCAAATTGGGGCTTATAT 59.830 41.667 17.27 0.00 43.37 0.86
4181 4380 3.529734 TCCTGACCAAATTGGGGCTTATA 59.470 43.478 17.27 0.00 43.37 0.98
4182 4381 2.314549 TCCTGACCAAATTGGGGCTTAT 59.685 45.455 17.27 0.00 43.37 1.73
4183 4382 1.713647 TCCTGACCAAATTGGGGCTTA 59.286 47.619 17.27 0.00 43.37 3.09
4184 4383 0.486879 TCCTGACCAAATTGGGGCTT 59.513 50.000 17.27 0.00 43.37 4.35
4185 4384 0.251787 GTCCTGACCAAATTGGGGCT 60.252 55.000 17.27 0.00 43.37 5.19
4186 4385 1.595093 CGTCCTGACCAAATTGGGGC 61.595 60.000 17.27 0.00 43.37 5.80
4187 4386 0.965363 CCGTCCTGACCAAATTGGGG 60.965 60.000 17.27 8.17 43.37 4.96
4188 4387 0.965363 CCCGTCCTGACCAAATTGGG 60.965 60.000 17.27 0.00 43.37 4.12
4189 4388 0.965363 CCCCGTCCTGACCAAATTGG 60.965 60.000 11.02 11.02 45.02 3.16
4190 4389 1.595093 GCCCCGTCCTGACCAAATTG 61.595 60.000 0.00 0.00 0.00 2.32
4191 4390 1.304134 GCCCCGTCCTGACCAAATT 60.304 57.895 0.00 0.00 0.00 1.82
4192 4391 2.355115 GCCCCGTCCTGACCAAAT 59.645 61.111 0.00 0.00 0.00 2.32
4193 4392 3.961414 GGCCCCGTCCTGACCAAA 61.961 66.667 0.00 0.00 0.00 3.28
4207 4406 4.527583 CTCTGAGCTCAGGCGGCC 62.528 72.222 36.92 12.11 43.91 6.13
4208 4407 2.795110 ATCTCTGAGCTCAGGCGGC 61.795 63.158 36.92 0.00 43.91 6.53
4209 4408 1.067749 CATCTCTGAGCTCAGGCGG 59.932 63.158 36.92 26.98 43.91 6.13
4210 4409 0.248990 GTCATCTCTGAGCTCAGGCG 60.249 60.000 36.92 28.27 43.91 5.52
4211 4410 0.248990 CGTCATCTCTGAGCTCAGGC 60.249 60.000 36.92 17.78 43.91 4.85
4212 4411 1.102154 ACGTCATCTCTGAGCTCAGG 58.898 55.000 36.92 27.96 43.91 3.86
4213 4412 3.563390 TCATACGTCATCTCTGAGCTCAG 59.437 47.826 33.73 33.73 45.08 3.35
4214 4413 3.545703 TCATACGTCATCTCTGAGCTCA 58.454 45.455 17.19 17.19 30.18 4.26
4257 4456 2.751166 AATTCTGGTGTCCTCGACTG 57.249 50.000 0.00 0.00 33.15 3.51
4267 4466 4.809426 CGGTAAAGTAGGCTAATTCTGGTG 59.191 45.833 7.77 0.00 0.00 4.17
4271 4470 3.453353 TGGCGGTAAAGTAGGCTAATTCT 59.547 43.478 7.77 1.78 0.00 2.40
4293 4492 1.805428 GCAACGAGTTTGGCCATGGT 61.805 55.000 14.67 0.00 35.51 3.55
4338 4537 1.449601 CGGCAATTACCAGGCTCGT 60.450 57.895 0.00 0.00 0.00 4.18
4390 4589 2.396955 CGACTAGGACTGGACGCGT 61.397 63.158 13.85 13.85 0.00 6.01
4437 4636 0.821301 TGAACACCTTGCATGCGGAA 60.821 50.000 17.40 4.52 0.00 4.30
4470 4669 6.841755 TGGAGAAAAGGGAAAAAGAAATACCA 59.158 34.615 0.00 0.00 0.00 3.25
4511 4711 6.542735 AGTCATCCATGATCAATTTGAGACAG 59.457 38.462 0.00 3.31 39.30 3.51
4512 4712 6.420638 AGTCATCCATGATCAATTTGAGACA 58.579 36.000 0.00 8.10 39.30 3.41
4544 4744 2.234908 ACAACAGGCACTCTCCATCTAC 59.765 50.000 0.00 0.00 34.60 2.59
4569 4769 0.307760 CGAGCACGCTCAACCTTTTT 59.692 50.000 18.54 0.00 42.86 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.