Multiple sequence alignment - TraesCS2D01G277000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G277000 chr2D 100.000 7735 0 0 1 7735 346585372 346577638 0.000000e+00 14284.0
1 TraesCS2D01G277000 chr2D 93.173 249 17 0 7355 7603 428658335 428658583 4.410000e-97 366.0
2 TraesCS2D01G277000 chr2D 99.167 120 1 0 3738 3857 346581518 346581399 4.700000e-52 217.0
3 TraesCS2D01G277000 chr2D 99.167 120 1 0 3855 3974 346581635 346581516 4.700000e-52 217.0
4 TraesCS2D01G277000 chr2D 89.831 59 2 4 7549 7604 34269710 34269653 1.080000e-08 73.1
5 TraesCS2D01G277000 chr2B 95.994 3844 104 23 33 3857 412409277 412405465 0.000000e+00 6200.0
6 TraesCS2D01G277000 chr2B 92.390 1209 47 14 3839 5032 412405596 412404418 0.000000e+00 1681.0
7 TraesCS2D01G277000 chr2B 93.768 1027 32 9 6082 7106 412403663 412402667 0.000000e+00 1513.0
8 TraesCS2D01G277000 chr2B 91.667 60 2 3 7544 7602 510793582 510793525 6.430000e-11 80.5
9 TraesCS2D01G277000 chr2A 94.405 3914 98 52 1 3857 460909113 460905264 0.000000e+00 5903.0
10 TraesCS2D01G277000 chr2A 94.741 1217 25 15 6146 7360 460903782 460902603 0.000000e+00 1857.0
11 TraesCS2D01G277000 chr2A 94.444 1188 37 8 3855 5026 460905384 460904210 0.000000e+00 1801.0
12 TraesCS2D01G277000 chr2A 93.434 198 10 3 6132 6327 460904004 460903808 2.730000e-74 291.0
13 TraesCS2D01G277000 chr2A 93.431 137 8 1 7600 7735 460902601 460902465 1.320000e-47 202.0
14 TraesCS2D01G277000 chr2A 97.561 41 1 0 5094 5134 460904206 460904166 3.870000e-08 71.3
15 TraesCS2D01G277000 chr3B 85.193 986 70 30 5211 6138 52572438 52571471 0.000000e+00 942.0
16 TraesCS2D01G277000 chr3B 92.308 52 2 2 7549 7599 236036723 236036773 1.080000e-08 73.1
17 TraesCS2D01G277000 chr1B 85.417 960 65 25 5214 6117 654414182 654415122 0.000000e+00 928.0
18 TraesCS2D01G277000 chr3A 84.950 897 62 23 5277 6117 316452296 316451417 0.000000e+00 841.0
19 TraesCS2D01G277000 chr3A 84.726 838 58 22 5231 6015 316453129 316452309 0.000000e+00 774.0
20 TraesCS2D01G277000 chr3A 82.727 110 18 1 7010 7119 455780250 455780142 6.390000e-16 97.1
21 TraesCS2D01G277000 chr3A 92.593 54 4 0 7557 7610 623195016 623194963 2.310000e-10 78.7
22 TraesCS2D01G277000 chr6B 84.705 863 59 23 5311 6117 302594693 302595538 0.000000e+00 795.0
23 TraesCS2D01G277000 chr6B 83.048 702 63 12 5457 6115 461950920 461951608 3.110000e-163 586.0
24 TraesCS2D01G277000 chr1A 90.040 251 24 1 7355 7604 297743918 297743668 2.690000e-84 324.0
25 TraesCS2D01G277000 chr7D 97.826 46 1 0 7557 7602 21942060 21942015 6.430000e-11 80.5
26 TraesCS2D01G277000 chr7B 91.228 57 2 3 7549 7602 674298748 674298804 2.990000e-09 75.0
27 TraesCS2D01G277000 chr5A 91.071 56 3 2 7551 7604 296178151 296178096 2.990000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G277000 chr2D 346577638 346585372 7734 True 4906.000000 14284 99.444667 1 7735 3 chr2D.!!$R2 7734
1 TraesCS2D01G277000 chr2B 412402667 412409277 6610 True 3131.333333 6200 94.050667 33 7106 3 chr2B.!!$R2 7073
2 TraesCS2D01G277000 chr2A 460902465 460909113 6648 True 1687.550000 5903 94.669333 1 7735 6 chr2A.!!$R1 7734
3 TraesCS2D01G277000 chr3B 52571471 52572438 967 True 942.000000 942 85.193000 5211 6138 1 chr3B.!!$R1 927
4 TraesCS2D01G277000 chr1B 654414182 654415122 940 False 928.000000 928 85.417000 5214 6117 1 chr1B.!!$F1 903
5 TraesCS2D01G277000 chr3A 316451417 316453129 1712 True 807.500000 841 84.838000 5231 6117 2 chr3A.!!$R3 886
6 TraesCS2D01G277000 chr6B 302594693 302595538 845 False 795.000000 795 84.705000 5311 6117 1 chr6B.!!$F1 806
7 TraesCS2D01G277000 chr6B 461950920 461951608 688 False 586.000000 586 83.048000 5457 6115 1 chr6B.!!$F2 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 513 0.327924 CACAATGTAGGACTGGGCCA 59.672 55.000 5.85 5.85 0.00 5.36 F
1168 1218 0.109226 CGGTCTTCGTCTTCCAGGTC 60.109 60.000 0.00 0.00 0.00 3.85 F
1738 1788 0.894835 CAAATGGTACTGTTGCCCCC 59.105 55.000 0.00 0.00 0.00 5.40 F
2669 2725 2.133641 GGCCTGCACCACCAAAACT 61.134 57.895 0.00 0.00 0.00 2.66 F
3424 3493 1.251251 ACTTGATTGGTGCTGCCTTC 58.749 50.000 0.00 0.00 38.35 3.46 F
4302 4375 0.318762 GGAAAGAGCAGTGTCGACCT 59.681 55.000 14.12 6.92 0.00 3.85 F
5438 5672 0.178992 CCACTCCACACACCCACATT 60.179 55.000 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 2001 2.111043 CACAACAGGCACCTCCGT 59.889 61.111 0.00 0.0 40.77 4.69 R
2703 2759 0.877071 AAGTTGGAGCATCAACAGCG 59.123 50.000 19.49 0.0 46.74 5.18 R
2841 2897 1.055338 GCAAGCGCATCAACTTCAAC 58.945 50.000 11.47 0.0 38.36 3.18 R
4136 4209 0.895559 TGCAGGAAGAGAGACGAGCA 60.896 55.000 0.00 0.0 0.00 4.26 R
5292 5393 0.036765 ACCGGCGCACAGAATAAGAA 60.037 50.000 10.83 0.0 0.00 2.52 R
5975 7177 0.744281 CCCCGCATGGTGGTAAAATC 59.256 55.000 0.00 0.0 0.00 2.17 R
7367 8844 0.104855 CGCTCCATCCAAATCTCCGA 59.895 55.000 0.00 0.0 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 4.664688 ATGGAACTCACTTTCCTCCAAT 57.335 40.909 3.66 0.00 44.89 3.16
97 99 0.811616 CATCCTCCTCGCCCTTTTCG 60.812 60.000 0.00 0.00 0.00 3.46
175 178 2.239907 ACCTCTCCAAAACCCTAGATGC 59.760 50.000 0.00 0.00 0.00 3.91
176 179 2.239654 CCTCTCCAAAACCCTAGATGCA 59.760 50.000 0.00 0.00 0.00 3.96
205 208 4.382254 CGTGGTTTGTACTCTGCCCTAATA 60.382 45.833 0.00 0.00 0.00 0.98
206 209 5.681639 GTGGTTTGTACTCTGCCCTAATAT 58.318 41.667 0.00 0.00 0.00 1.28
232 235 2.744202 CCAAAGCTAGACAAACTCGCAT 59.256 45.455 0.00 0.00 39.36 4.73
292 295 6.011451 GGTTAGGGGAGGAAGAGATCTAGATA 60.011 46.154 4.89 0.00 0.00 1.98
302 305 6.039493 GGAAGAGATCTAGATAACGGTGAACA 59.961 42.308 4.89 0.00 0.00 3.18
304 307 5.007823 AGAGATCTAGATAACGGTGAACACG 59.992 44.000 4.89 0.00 37.36 4.49
350 355 5.542251 AGGAGAGAAATACTAGATGGAAGCC 59.458 44.000 0.00 0.00 0.00 4.35
353 358 5.010213 AGAGAAATACTAGATGGAAGCCGAC 59.990 44.000 0.00 0.00 0.00 4.79
385 391 8.528044 AAAACTTAGGACCTCACATTTTACAA 57.472 30.769 0.00 0.00 0.00 2.41
390 396 9.626045 CTTAGGACCTCACATTTTACAATTTTC 57.374 33.333 0.00 0.00 0.00 2.29
506 512 0.328258 ACACAATGTAGGACTGGGCC 59.672 55.000 0.00 0.00 0.00 5.80
507 513 0.327924 CACAATGTAGGACTGGGCCA 59.672 55.000 5.85 5.85 0.00 5.36
508 514 0.328258 ACAATGTAGGACTGGGCCAC 59.672 55.000 0.00 0.00 0.00 5.01
509 515 0.620556 CAATGTAGGACTGGGCCACT 59.379 55.000 0.00 0.08 0.00 4.00
510 516 0.620556 AATGTAGGACTGGGCCACTG 59.379 55.000 0.00 0.00 0.00 3.66
511 517 1.274703 ATGTAGGACTGGGCCACTGG 61.275 60.000 0.00 0.00 0.00 4.00
512 518 2.285368 TAGGACTGGGCCACTGGG 60.285 66.667 0.00 0.00 37.18 4.45
513 519 3.943137 TAGGACTGGGCCACTGGGG 62.943 68.421 0.00 0.00 40.85 4.96
550 556 0.895559 GGAGTTGGGGCTGGTCAAAG 60.896 60.000 0.00 0.00 0.00 2.77
565 571 6.625960 GCTGGTCAAAGTCTAATTCAAATCCC 60.626 42.308 0.00 0.00 0.00 3.85
644 665 4.520846 CCGAAAGCACATCCGCGC 62.521 66.667 0.00 0.00 36.85 6.86
842 869 1.304217 TCGACCCTCCACCACTCTC 60.304 63.158 0.00 0.00 0.00 3.20
843 870 2.352032 CGACCCTCCACCACTCTCC 61.352 68.421 0.00 0.00 0.00 3.71
844 871 1.990614 GACCCTCCACCACTCTCCC 60.991 68.421 0.00 0.00 0.00 4.30
845 872 2.452114 CCCTCCACCACTCTCCCT 59.548 66.667 0.00 0.00 0.00 4.20
1079 1129 2.740714 CGGCGCAAGTGGTAAGCTC 61.741 63.158 10.83 0.00 41.68 4.09
1148 1198 1.447838 CCCTGACCCGATTCGTGTG 60.448 63.158 0.00 0.00 0.00 3.82
1168 1218 0.109226 CGGTCTTCGTCTTCCAGGTC 60.109 60.000 0.00 0.00 0.00 3.85
1738 1788 0.894835 CAAATGGTACTGTTGCCCCC 59.105 55.000 0.00 0.00 0.00 5.40
1951 2001 2.879646 GTTTACAACCCACCGAATGACA 59.120 45.455 0.00 0.00 0.00 3.58
1952 2002 2.172851 TACAACCCACCGAATGACAC 57.827 50.000 0.00 0.00 0.00 3.67
2389 2443 9.605275 CTGATTCTGGAATGAAAATACTACAGA 57.395 33.333 0.17 0.00 32.47 3.41
2390 2444 9.605275 TGATTCTGGAATGAAAATACTACAGAG 57.395 33.333 0.17 0.00 35.45 3.35
2391 2445 7.849804 TTCTGGAATGAAAATACTACAGAGC 57.150 36.000 0.00 0.00 35.45 4.09
2500 2556 5.189736 TGTCTATCTAGTGCCTTTGGTTGAT 59.810 40.000 0.00 0.00 0.00 2.57
2669 2725 2.133641 GGCCTGCACCACCAAAACT 61.134 57.895 0.00 0.00 0.00 2.66
2703 2759 2.191641 GCTCCTGCCCCATCTGTC 59.808 66.667 0.00 0.00 0.00 3.51
2812 2868 8.780249 GCATTGAAAACCTTCTTAGTACACTAA 58.220 33.333 0.00 2.07 36.99 2.24
3171 3229 3.854666 TCATCAGCTTGCTCTCTGTTAC 58.145 45.455 0.00 0.00 0.00 2.50
3266 3324 8.181904 AGTTTGTTTTGGATGATGTAGATGTT 57.818 30.769 0.00 0.00 0.00 2.71
3275 3341 8.862325 TGGATGATGTAGATGTTTGTTTAACT 57.138 30.769 0.00 0.00 37.64 2.24
3345 3414 2.301346 CCTGTTGCCTTGAAACTCTGT 58.699 47.619 0.00 0.00 0.00 3.41
3424 3493 1.251251 ACTTGATTGGTGCTGCCTTC 58.749 50.000 0.00 0.00 38.35 3.46
3493 3562 8.451908 AGTATATTAGATTGGTGTTGCCTTTC 57.548 34.615 0.00 0.00 38.35 2.62
3501 3570 1.691434 GGTGTTGCCTTTCATTTCCCA 59.309 47.619 0.00 0.00 0.00 4.37
3537 3606 7.914427 TGGATGTATGGAGTTATTGACTAGT 57.086 36.000 0.00 0.00 39.19 2.57
3538 3607 9.601810 ATGGATGTATGGAGTTATTGACTAGTA 57.398 33.333 0.00 0.00 39.19 1.82
3539 3608 9.078990 TGGATGTATGGAGTTATTGACTAGTAG 57.921 37.037 0.00 0.00 39.19 2.57
3642 3711 6.814146 AGTGCTACAACTTAGTTAGAGAATGC 59.186 38.462 0.00 0.00 0.00 3.56
3743 3812 6.461110 AGAATGTTATTCCATGCTCTTTGG 57.539 37.500 0.00 0.00 35.45 3.28
3744 3813 5.954150 AGAATGTTATTCCATGCTCTTTGGT 59.046 36.000 0.00 0.00 35.64 3.67
3745 3814 5.587388 ATGTTATTCCATGCTCTTTGGTG 57.413 39.130 0.00 0.00 35.64 4.17
3746 3815 4.406456 TGTTATTCCATGCTCTTTGGTGT 58.594 39.130 0.00 0.00 35.64 4.16
3747 3816 4.832266 TGTTATTCCATGCTCTTTGGTGTT 59.168 37.500 0.00 0.00 35.64 3.32
3748 3817 5.048083 TGTTATTCCATGCTCTTTGGTGTTC 60.048 40.000 0.00 0.00 35.64 3.18
3749 3818 2.655090 TCCATGCTCTTTGGTGTTCA 57.345 45.000 0.00 0.00 35.64 3.18
3750 3819 2.942804 TCCATGCTCTTTGGTGTTCAA 58.057 42.857 0.00 0.00 35.64 2.69
3751 3820 3.499338 TCCATGCTCTTTGGTGTTCAAT 58.501 40.909 0.00 0.00 34.98 2.57
3752 3821 3.896888 TCCATGCTCTTTGGTGTTCAATT 59.103 39.130 0.00 0.00 34.98 2.32
3753 3822 4.344679 TCCATGCTCTTTGGTGTTCAATTT 59.655 37.500 0.00 0.00 34.98 1.82
3754 3823 5.538053 TCCATGCTCTTTGGTGTTCAATTTA 59.462 36.000 0.00 0.00 34.98 1.40
3755 3824 5.634859 CCATGCTCTTTGGTGTTCAATTTAC 59.365 40.000 0.00 0.00 34.98 2.01
3756 3825 5.843673 TGCTCTTTGGTGTTCAATTTACA 57.156 34.783 0.00 0.00 34.98 2.41
3757 3826 6.214191 TGCTCTTTGGTGTTCAATTTACAA 57.786 33.333 0.00 0.00 34.98 2.41
3758 3827 6.272318 TGCTCTTTGGTGTTCAATTTACAAG 58.728 36.000 0.00 0.00 34.98 3.16
3759 3828 5.691754 GCTCTTTGGTGTTCAATTTACAAGG 59.308 40.000 0.00 0.00 34.98 3.61
3760 3829 6.682861 GCTCTTTGGTGTTCAATTTACAAGGT 60.683 38.462 0.00 0.00 34.98 3.50
3761 3830 7.176589 TCTTTGGTGTTCAATTTACAAGGTT 57.823 32.000 0.00 0.00 34.98 3.50
3762 3831 7.262048 TCTTTGGTGTTCAATTTACAAGGTTC 58.738 34.615 0.00 0.00 34.98 3.62
3763 3832 6.783708 TTGGTGTTCAATTTACAAGGTTCT 57.216 33.333 0.00 0.00 0.00 3.01
3764 3833 6.783708 TGGTGTTCAATTTACAAGGTTCTT 57.216 33.333 0.00 0.00 0.00 2.52
3765 3834 6.568869 TGGTGTTCAATTTACAAGGTTCTTG 58.431 36.000 6.15 6.15 0.00 3.02
3766 3835 6.378564 TGGTGTTCAATTTACAAGGTTCTTGA 59.621 34.615 13.74 0.00 0.00 3.02
3767 3836 6.918022 GGTGTTCAATTTACAAGGTTCTTGAG 59.082 38.462 13.74 0.00 0.00 3.02
3768 3837 6.918022 GTGTTCAATTTACAAGGTTCTTGAGG 59.082 38.462 13.74 0.00 0.00 3.86
3769 3838 6.831353 TGTTCAATTTACAAGGTTCTTGAGGA 59.169 34.615 13.74 0.77 0.00 3.71
3770 3839 7.340743 TGTTCAATTTACAAGGTTCTTGAGGAA 59.659 33.333 13.74 6.24 0.00 3.36
3771 3840 8.360390 GTTCAATTTACAAGGTTCTTGAGGAAT 58.640 33.333 13.74 7.87 36.24 3.01
3772 3841 8.477419 TCAATTTACAAGGTTCTTGAGGAATT 57.523 30.769 13.74 12.06 36.24 2.17
3773 3842 8.923270 TCAATTTACAAGGTTCTTGAGGAATTT 58.077 29.630 13.74 5.75 36.24 1.82
3777 3846 9.807921 TTTACAAGGTTCTTGAGGAATTTATCT 57.192 29.630 13.74 0.00 36.24 1.98
3778 3847 9.807921 TTACAAGGTTCTTGAGGAATTTATCTT 57.192 29.630 13.74 0.00 36.24 2.40
3779 3848 8.115490 ACAAGGTTCTTGAGGAATTTATCTTG 57.885 34.615 13.74 0.00 36.24 3.02
3780 3849 7.725844 ACAAGGTTCTTGAGGAATTTATCTTGT 59.274 33.333 13.74 0.00 36.24 3.16
3781 3850 8.579863 CAAGGTTCTTGAGGAATTTATCTTGTT 58.420 33.333 1.73 0.00 36.24 2.83
3782 3851 8.712228 AGGTTCTTGAGGAATTTATCTTGTTT 57.288 30.769 0.00 0.00 36.24 2.83
3783 3852 9.147732 AGGTTCTTGAGGAATTTATCTTGTTTT 57.852 29.630 0.00 0.00 36.24 2.43
3784 3853 9.411801 GGTTCTTGAGGAATTTATCTTGTTTTC 57.588 33.333 0.00 0.00 36.24 2.29
3831 3900 6.739112 GTCATATGCTACTATGTGACTGACA 58.261 40.000 0.00 0.00 42.45 3.58
3833 3902 7.869937 GTCATATGCTACTATGTGACTGACATT 59.130 37.037 0.00 0.00 43.20 2.71
3834 3903 8.424133 TCATATGCTACTATGTGACTGACATTT 58.576 33.333 0.00 0.00 43.20 2.32
3835 3904 9.696917 CATATGCTACTATGTGACTGACATTTA 57.303 33.333 0.00 0.00 43.20 1.40
3838 3907 9.618890 ATGCTACTATGTGACTGACATTTAATT 57.381 29.630 0.00 0.00 43.20 1.40
3839 3908 8.882736 TGCTACTATGTGACTGACATTTAATTG 58.117 33.333 0.00 0.00 43.20 2.32
3840 3909 8.883731 GCTACTATGTGACTGACATTTAATTGT 58.116 33.333 2.71 2.71 43.20 2.71
3843 3912 8.023128 ACTATGTGACTGACATTTAATTGTTGC 58.977 33.333 4.59 0.00 43.20 4.17
3844 3913 6.389830 TGTGACTGACATTTAATTGTTGCT 57.610 33.333 4.59 0.00 0.00 3.91
3845 3914 6.804677 TGTGACTGACATTTAATTGTTGCTT 58.195 32.000 4.59 0.00 0.00 3.91
3846 3915 6.917477 TGTGACTGACATTTAATTGTTGCTTC 59.083 34.615 4.59 1.59 0.00 3.86
3847 3916 6.363357 GTGACTGACATTTAATTGTTGCTTCC 59.637 38.462 4.59 0.00 0.00 3.46
3848 3917 6.040278 TGACTGACATTTAATTGTTGCTTCCA 59.960 34.615 4.59 0.00 0.00 3.53
3849 3918 6.215845 ACTGACATTTAATTGTTGCTTCCAC 58.784 36.000 4.59 0.00 0.00 4.02
3850 3919 6.040842 ACTGACATTTAATTGTTGCTTCCACT 59.959 34.615 4.59 0.00 0.00 4.00
3851 3920 6.815089 TGACATTTAATTGTTGCTTCCACTT 58.185 32.000 4.59 0.00 0.00 3.16
3852 3921 6.700960 TGACATTTAATTGTTGCTTCCACTTG 59.299 34.615 4.59 0.00 0.00 3.16
3853 3922 6.581712 ACATTTAATTGTTGCTTCCACTTGT 58.418 32.000 0.00 0.00 0.00 3.16
3854 3923 7.047271 ACATTTAATTGTTGCTTCCACTTGTT 58.953 30.769 0.00 0.00 0.00 2.83
3855 3924 7.224557 ACATTTAATTGTTGCTTCCACTTGTTC 59.775 33.333 0.00 0.00 0.00 3.18
4073 4145 7.604927 TGGGCTATAAACGAATACCATGTAATC 59.395 37.037 0.00 0.00 0.00 1.75
4136 4209 5.204409 TCTGAAACAGAAAATGCTGCATT 57.796 34.783 21.48 21.48 37.57 3.56
4159 4232 1.216710 GTCTCTCTTCCTGCACCCG 59.783 63.158 0.00 0.00 0.00 5.28
4302 4375 0.318762 GGAAAGAGCAGTGTCGACCT 59.681 55.000 14.12 6.92 0.00 3.85
4372 4457 3.246112 CCGTGGTGGTGGGAGGAA 61.246 66.667 0.00 0.00 0.00 3.36
4543 4628 6.678568 TGATTGGGTTGGTTAAATCAATGT 57.321 33.333 0.00 0.00 36.40 2.71
4544 4629 6.462500 TGATTGGGTTGGTTAAATCAATGTG 58.538 36.000 0.00 0.00 36.40 3.21
4711 4805 9.931210 GTAATCCGATTCCAATTAAGTTTACAG 57.069 33.333 0.00 0.00 0.00 2.74
4955 5050 7.480810 GTGGTATGTTTCTGAAAGTTCAACTT 58.519 34.615 2.48 0.00 40.80 2.66
4964 5059 6.419791 TCTGAAAGTTCAACTTAACCCTGAA 58.580 36.000 2.38 0.00 37.47 3.02
4965 5060 7.060421 TCTGAAAGTTCAACTTAACCCTGAAT 58.940 34.615 2.38 0.00 37.47 2.57
4966 5061 7.013274 TCTGAAAGTTCAACTTAACCCTGAATG 59.987 37.037 2.38 0.00 37.47 2.67
4967 5062 6.605594 TGAAAGTTCAACTTAACCCTGAATGT 59.394 34.615 2.38 0.00 37.47 2.71
4968 5063 7.776030 TGAAAGTTCAACTTAACCCTGAATGTA 59.224 33.333 2.38 0.00 37.47 2.29
4969 5064 8.528044 AAAGTTCAACTTAACCCTGAATGTAA 57.472 30.769 2.38 0.00 37.47 2.41
4970 5065 8.528044 AAGTTCAACTTAACCCTGAATGTAAA 57.472 30.769 0.00 0.00 36.52 2.01
4971 5066 8.528044 AGTTCAACTTAACCCTGAATGTAAAA 57.472 30.769 0.00 0.00 32.08 1.52
4972 5067 8.973182 AGTTCAACTTAACCCTGAATGTAAAAA 58.027 29.630 0.00 0.00 32.08 1.94
5001 5096 6.635030 AGAATGTACAAGGTTTTGGTCTTC 57.365 37.500 0.00 0.00 38.66 2.87
5079 5174 6.822667 TGACAATGGATGCATAACATATCC 57.177 37.500 14.63 5.20 39.84 2.59
5080 5175 5.412286 TGACAATGGATGCATAACATATCCG 59.588 40.000 14.63 8.15 42.60 4.18
5081 5176 5.316167 ACAATGGATGCATAACATATCCGT 58.684 37.500 14.63 3.34 42.60 4.69
5082 5177 5.769662 ACAATGGATGCATAACATATCCGTT 59.230 36.000 14.63 8.86 46.10 4.44
5083 5178 5.885230 ATGGATGCATAACATATCCGTTG 57.115 39.130 13.12 0.00 42.60 4.10
5084 5179 4.713553 TGGATGCATAACATATCCGTTGT 58.286 39.130 0.00 0.00 42.60 3.32
5085 5180 4.514816 TGGATGCATAACATATCCGTTGTG 59.485 41.667 0.00 0.00 42.60 3.33
5086 5181 4.754618 GGATGCATAACATATCCGTTGTGA 59.245 41.667 0.00 0.00 39.56 3.58
5087 5182 5.412594 GGATGCATAACATATCCGTTGTGAT 59.587 40.000 0.00 0.00 39.56 3.06
5088 5183 5.671742 TGCATAACATATCCGTTGTGATG 57.328 39.130 6.80 0.00 39.56 3.07
5089 5184 5.122519 TGCATAACATATCCGTTGTGATGT 58.877 37.500 6.80 0.00 39.56 3.06
5090 5185 6.284459 TGCATAACATATCCGTTGTGATGTA 58.716 36.000 6.80 0.00 39.56 2.29
5091 5186 6.423604 TGCATAACATATCCGTTGTGATGTAG 59.576 38.462 6.80 0.00 39.56 2.74
5092 5187 6.423905 GCATAACATATCCGTTGTGATGTAGT 59.576 38.462 6.80 0.00 39.56 2.73
5122 5217 7.434897 GCTTGAAGTTTCAATGTTTGACATGTA 59.565 33.333 0.00 0.00 45.26 2.29
5164 5259 5.726980 ATTTGGCTCACATGTATTGTTGT 57.273 34.783 0.00 0.00 36.00 3.32
5165 5260 5.528043 TTTGGCTCACATGTATTGTTGTT 57.472 34.783 0.00 0.00 36.00 2.83
5166 5261 4.502171 TGGCTCACATGTATTGTTGTTG 57.498 40.909 0.00 0.00 36.00 3.33
5167 5262 3.255395 TGGCTCACATGTATTGTTGTTGG 59.745 43.478 0.00 0.00 36.00 3.77
5168 5263 3.244976 GCTCACATGTATTGTTGTTGGC 58.755 45.455 0.00 0.00 36.00 4.52
5169 5264 3.305267 GCTCACATGTATTGTTGTTGGCA 60.305 43.478 0.00 0.00 36.00 4.92
5170 5265 4.229096 CTCACATGTATTGTTGTTGGCAC 58.771 43.478 0.00 0.00 36.00 5.01
5171 5266 3.888323 TCACATGTATTGTTGTTGGCACT 59.112 39.130 0.00 0.00 36.00 4.40
5172 5267 4.340666 TCACATGTATTGTTGTTGGCACTT 59.659 37.500 0.00 0.00 36.00 3.16
5173 5268 5.049167 CACATGTATTGTTGTTGGCACTTT 58.951 37.500 0.00 0.00 36.00 2.66
5174 5269 5.175491 CACATGTATTGTTGTTGGCACTTTC 59.825 40.000 0.00 0.00 36.00 2.62
5175 5270 4.991153 TGTATTGTTGTTGGCACTTTCA 57.009 36.364 0.00 0.00 0.00 2.69
5176 5271 5.528043 TGTATTGTTGTTGGCACTTTCAT 57.472 34.783 0.00 0.00 0.00 2.57
5177 5272 5.911752 TGTATTGTTGTTGGCACTTTCATT 58.088 33.333 0.00 0.00 0.00 2.57
5178 5273 6.344500 TGTATTGTTGTTGGCACTTTCATTT 58.656 32.000 0.00 0.00 0.00 2.32
5179 5274 5.738118 ATTGTTGTTGGCACTTTCATTTG 57.262 34.783 0.00 0.00 0.00 2.32
5180 5275 4.199432 TGTTGTTGGCACTTTCATTTGT 57.801 36.364 0.00 0.00 0.00 2.83
5181 5276 4.573900 TGTTGTTGGCACTTTCATTTGTT 58.426 34.783 0.00 0.00 0.00 2.83
5182 5277 4.629200 TGTTGTTGGCACTTTCATTTGTTC 59.371 37.500 0.00 0.00 0.00 3.18
5183 5278 3.791245 TGTTGGCACTTTCATTTGTTCC 58.209 40.909 0.00 0.00 0.00 3.62
5184 5279 3.196469 TGTTGGCACTTTCATTTGTTCCA 59.804 39.130 0.00 0.00 0.00 3.53
5185 5280 3.731652 TGGCACTTTCATTTGTTCCAG 57.268 42.857 0.00 0.00 0.00 3.86
5186 5281 3.030291 TGGCACTTTCATTTGTTCCAGT 58.970 40.909 0.00 0.00 0.00 4.00
5187 5282 3.450457 TGGCACTTTCATTTGTTCCAGTT 59.550 39.130 0.00 0.00 0.00 3.16
5188 5283 4.081198 TGGCACTTTCATTTGTTCCAGTTT 60.081 37.500 0.00 0.00 0.00 2.66
5189 5284 5.127845 TGGCACTTTCATTTGTTCCAGTTTA 59.872 36.000 0.00 0.00 0.00 2.01
5190 5285 6.045955 GGCACTTTCATTTGTTCCAGTTTAA 58.954 36.000 0.00 0.00 0.00 1.52
5191 5286 6.200854 GGCACTTTCATTTGTTCCAGTTTAAG 59.799 38.462 0.00 0.00 0.00 1.85
5192 5287 6.756542 GCACTTTCATTTGTTCCAGTTTAAGT 59.243 34.615 0.00 0.00 0.00 2.24
5193 5288 7.277760 GCACTTTCATTTGTTCCAGTTTAAGTT 59.722 33.333 0.00 0.00 0.00 2.66
5194 5289 9.796120 CACTTTCATTTGTTCCAGTTTAAGTTA 57.204 29.630 0.00 0.00 0.00 2.24
5303 5404 4.319177 AGAGCGCAAAGTTCTTATTCTGT 58.681 39.130 11.47 0.00 37.07 3.41
5382 5615 4.671766 CGCTAATTGTGTGAGGGTAAAAGC 60.672 45.833 0.00 0.00 0.00 3.51
5389 5622 4.141574 TGTGTGAGGGTAAAAGCAAGTAGT 60.142 41.667 0.00 0.00 0.00 2.73
5430 5663 7.825331 TTAATTTTGATTACCACTCCACACA 57.175 32.000 0.00 0.00 0.00 3.72
5436 5670 0.691413 TACCACTCCACACACCCACA 60.691 55.000 0.00 0.00 0.00 4.17
5438 5672 0.178992 CCACTCCACACACCCACATT 60.179 55.000 0.00 0.00 0.00 2.71
5465 5699 5.581126 TCGCTAATCTTACGAGGGTAAAA 57.419 39.130 0.00 0.00 38.12 1.52
5470 5704 7.224167 CGCTAATCTTACGAGGGTAAAAAGAAT 59.776 37.037 0.00 0.00 38.12 2.40
5471 5705 8.890718 GCTAATCTTACGAGGGTAAAAAGAATT 58.109 33.333 0.00 0.00 38.12 2.17
5476 5710 7.886446 TCTTACGAGGGTAAAAAGAATTGGAAT 59.114 33.333 0.00 0.00 38.12 3.01
5481 5715 6.993079 AGGGTAAAAAGAATTGGAATGTGAC 58.007 36.000 0.00 0.00 0.00 3.67
5483 5717 7.039714 AGGGTAAAAAGAATTGGAATGTGACTC 60.040 37.037 0.00 0.00 0.00 3.36
5493 5727 3.684305 TGGAATGTGACTCGTATTGCTTG 59.316 43.478 0.00 0.00 0.00 4.01
5494 5728 3.063997 GGAATGTGACTCGTATTGCTTGG 59.936 47.826 0.00 0.00 0.00 3.61
5495 5729 2.093306 TGTGACTCGTATTGCTTGGG 57.907 50.000 0.00 0.00 0.00 4.12
5497 5731 2.236146 TGTGACTCGTATTGCTTGGGAT 59.764 45.455 0.00 0.00 0.00 3.85
5528 5762 5.708230 ACCATATGCAAGAAAAAGTAACGGA 59.292 36.000 0.00 0.00 0.00 4.69
5548 5782 5.062558 ACGGATTTAAATTGGTTACGACTCG 59.937 40.000 1.43 0.00 0.00 4.18
5549 5783 5.062558 CGGATTTAAATTGGTTACGACTCGT 59.937 40.000 9.45 9.45 44.35 4.18
5550 5784 6.472680 GGATTTAAATTGGTTACGACTCGTC 58.527 40.000 7.52 0.00 41.54 4.20
5551 5785 6.091169 GGATTTAAATTGGTTACGACTCGTCA 59.909 38.462 7.52 0.00 41.54 4.35
5552 5786 7.201582 GGATTTAAATTGGTTACGACTCGTCAT 60.202 37.037 7.52 0.00 41.54 3.06
5553 5787 4.921470 AAATTGGTTACGACTCGTCATG 57.079 40.909 7.52 0.00 41.54 3.07
5580 5814 2.105128 CCGCTCCGTGGATGAGTC 59.895 66.667 0.00 0.00 34.74 3.36
5591 5825 3.852536 CGTGGATGAGTCGTTCTTCTAAC 59.147 47.826 0.00 0.00 32.15 2.34
5593 5827 3.194968 TGGATGAGTCGTTCTTCTAACCC 59.805 47.826 0.00 0.00 32.15 4.11
5607 5842 4.460948 TCTAACCCGGTAAAGTAGCAAG 57.539 45.455 0.00 0.00 0.00 4.01
5696 5931 7.309194 CCAACCAATCTTCTAACCTGGTAAAAG 60.309 40.741 0.00 4.67 39.48 2.27
5810 6984 8.812147 TTTACTACGAGGCAGATAATTATGTG 57.188 34.615 16.32 16.32 0.00 3.21
5815 6989 4.926238 CGAGGCAGATAATTATGTGGAGAC 59.074 45.833 20.64 6.97 0.00 3.36
5848 7022 9.503427 GAATAGGTGCAACAGTAACATATTTTC 57.497 33.333 3.64 0.00 39.98 2.29
5851 7025 7.593825 AGGTGCAACAGTAACATATTTTCTTC 58.406 34.615 3.64 0.00 39.98 2.87
5874 7048 3.621715 CGTTACTACTTTTCCCATGGCTC 59.378 47.826 6.09 0.00 0.00 4.70
5886 7060 5.483685 TCCCATGGCTCATTACTATGTAC 57.516 43.478 6.09 0.00 33.34 2.90
5889 7063 4.997395 CCATGGCTCATTACTATGTACCAC 59.003 45.833 0.00 0.00 39.16 4.16
5890 7064 5.454613 CCATGGCTCATTACTATGTACCACA 60.455 44.000 0.00 0.00 39.16 4.17
5909 7111 5.657470 CACATGGACTAATTATGTGGTCG 57.343 43.478 9.51 0.00 44.80 4.79
5931 7133 1.374758 CGAGGCGGGGAATAGATGC 60.375 63.158 0.00 0.00 0.00 3.91
5949 7151 2.852449 TGCGTCCAGTGGTAATGAAAA 58.148 42.857 9.54 0.00 0.00 2.29
5975 7177 7.921214 ACAATTCAGTTACTATAGTGTCCATCG 59.079 37.037 15.90 0.00 0.00 3.84
5994 7206 0.744281 GATTTTACCACCATGCGGGG 59.256 55.000 5.93 3.70 42.91 5.73
6293 7747 4.502016 TCTGAGATGAAGATGAAGCACAC 58.498 43.478 0.00 0.00 0.00 3.82
6375 7829 6.299141 CCACCCTTGCTTGTACATAATCTAT 58.701 40.000 0.00 0.00 0.00 1.98
6586 8040 0.762461 ACTGGAGGGAGAGGCTATGC 60.762 60.000 0.00 0.00 0.00 3.14
6701 8155 2.512515 GATCACTCTGGCACCGGC 60.513 66.667 0.00 0.00 40.13 6.13
7051 8526 4.511617 TTTTAGCATGGCAAATCGAACA 57.488 36.364 0.00 0.00 0.00 3.18
7052 8527 3.485947 TTAGCATGGCAAATCGAACAC 57.514 42.857 0.00 0.00 0.00 3.32
7053 8528 0.527565 AGCATGGCAAATCGAACACC 59.472 50.000 0.00 0.00 0.00 4.16
7054 8529 0.527565 GCATGGCAAATCGAACACCT 59.472 50.000 0.00 0.00 0.00 4.00
7055 8530 1.733389 GCATGGCAAATCGAACACCTG 60.733 52.381 0.00 0.00 0.00 4.00
7056 8531 1.811965 CATGGCAAATCGAACACCTGA 59.188 47.619 0.00 0.00 0.00 3.86
7057 8532 1.522668 TGGCAAATCGAACACCTGAG 58.477 50.000 0.00 0.00 0.00 3.35
7058 8533 1.071542 TGGCAAATCGAACACCTGAGA 59.928 47.619 0.00 0.00 0.00 3.27
7059 8534 2.290260 TGGCAAATCGAACACCTGAGAT 60.290 45.455 0.00 0.00 0.00 2.75
7060 8535 2.096496 GGCAAATCGAACACCTGAGATG 59.904 50.000 0.00 0.00 0.00 2.90
7061 8536 2.096496 GCAAATCGAACACCTGAGATGG 59.904 50.000 0.00 0.00 0.00 3.51
7062 8537 2.029838 AATCGAACACCTGAGATGGC 57.970 50.000 0.00 0.00 0.00 4.40
7063 8538 0.904649 ATCGAACACCTGAGATGGCA 59.095 50.000 0.00 0.00 0.00 4.92
7064 8539 0.684535 TCGAACACCTGAGATGGCAA 59.315 50.000 0.00 0.00 0.00 4.52
7065 8540 1.071542 TCGAACACCTGAGATGGCAAA 59.928 47.619 0.00 0.00 0.00 3.68
7066 8541 2.086869 CGAACACCTGAGATGGCAAAT 58.913 47.619 0.00 0.00 0.00 2.32
7076 8551 6.014327 ACCTGAGATGGCAAATTATGTTGTTT 60.014 34.615 0.00 0.00 0.00 2.83
7093 8568 5.163683 TGTTGTTTTGTGGATGGCAATTTTG 60.164 36.000 0.00 0.00 0.00 2.44
7108 8583 4.378666 GCAATTTTGTAAAGCAAGCATGGG 60.379 41.667 0.00 0.00 38.47 4.00
7109 8584 2.453983 TTTGTAAAGCAAGCATGGGC 57.546 45.000 0.00 0.00 38.47 5.36
7110 8585 1.336131 TTGTAAAGCAAGCATGGGCA 58.664 45.000 0.00 0.00 44.61 5.36
7111 8586 1.336131 TGTAAAGCAAGCATGGGCAA 58.664 45.000 0.00 0.00 44.61 4.52
7112 8587 1.901159 TGTAAAGCAAGCATGGGCAAT 59.099 42.857 0.00 0.00 44.61 3.56
7113 8588 2.273557 GTAAAGCAAGCATGGGCAATG 58.726 47.619 0.00 0.00 44.61 2.82
7138 8613 5.406767 TGCTTAAAACATTGCTTGCTTTG 57.593 34.783 0.00 0.00 0.00 2.77
7143 8618 7.644945 GCTTAAAACATTGCTTGCTTTGAAAAT 59.355 29.630 0.00 0.00 0.00 1.82
7152 8627 5.050904 TGCTTGCTTTGAAAATTTGTCATCG 60.051 36.000 0.00 0.00 0.00 3.84
7156 8631 4.208873 GCTTTGAAAATTTGTCATCGCACA 59.791 37.500 0.00 0.00 0.00 4.57
7264 8741 1.014044 TGATTCGCACAAGACGGAGC 61.014 55.000 0.00 0.00 0.00 4.70
7267 8744 2.636778 TTCGCACAAGACGGAGCACA 62.637 55.000 0.00 0.00 0.00 4.57
7278 8755 2.660236 GACGGAGCACAAGTAGTTTACG 59.340 50.000 0.00 0.00 0.00 3.18
7286 8763 3.239026 CACAAGTAGTTTACGCCGTATCG 59.761 47.826 0.00 0.00 0.00 2.92
7360 8837 5.830991 TGTGGGTAATTGTTTAGAGTTGCTT 59.169 36.000 0.00 0.00 0.00 3.91
7361 8838 6.149633 GTGGGTAATTGTTTAGAGTTGCTTG 58.850 40.000 0.00 0.00 0.00 4.01
7362 8839 5.830991 TGGGTAATTGTTTAGAGTTGCTTGT 59.169 36.000 0.00 0.00 0.00 3.16
7363 8840 6.016610 TGGGTAATTGTTTAGAGTTGCTTGTC 60.017 38.462 0.00 0.00 0.00 3.18
7364 8841 6.206829 GGGTAATTGTTTAGAGTTGCTTGTCT 59.793 38.462 0.00 0.00 0.00 3.41
7365 8842 7.298854 GGTAATTGTTTAGAGTTGCTTGTCTC 58.701 38.462 0.00 0.00 0.00 3.36
7366 8843 7.173390 GGTAATTGTTTAGAGTTGCTTGTCTCT 59.827 37.037 0.00 0.00 42.62 3.10
7367 8844 7.573968 AATTGTTTAGAGTTGCTTGTCTCTT 57.426 32.000 0.00 0.00 40.78 2.85
7368 8845 6.604735 TTGTTTAGAGTTGCTTGTCTCTTC 57.395 37.500 0.00 0.00 40.78 2.87
7369 8846 4.745125 TGTTTAGAGTTGCTTGTCTCTTCG 59.255 41.667 0.00 0.00 40.78 3.79
7370 8847 2.447244 AGAGTTGCTTGTCTCTTCGG 57.553 50.000 0.00 0.00 37.72 4.30
7371 8848 1.964223 AGAGTTGCTTGTCTCTTCGGA 59.036 47.619 0.00 0.00 37.72 4.55
7372 8849 2.029470 AGAGTTGCTTGTCTCTTCGGAG 60.029 50.000 0.00 0.00 43.09 4.63
7382 8859 3.827008 TCTCTTCGGAGATTTGGATGG 57.173 47.619 0.00 0.00 45.16 3.51
7383 8860 3.374764 TCTCTTCGGAGATTTGGATGGA 58.625 45.455 0.00 0.00 45.16 3.41
7384 8861 3.386078 TCTCTTCGGAGATTTGGATGGAG 59.614 47.826 0.00 0.00 45.16 3.86
7385 8862 2.158900 TCTTCGGAGATTTGGATGGAGC 60.159 50.000 0.00 0.00 35.04 4.70
7386 8863 0.104855 TCGGAGATTTGGATGGAGCG 59.895 55.000 0.00 0.00 0.00 5.03
7387 8864 0.104855 CGGAGATTTGGATGGAGCGA 59.895 55.000 0.00 0.00 0.00 4.93
7388 8865 1.473257 CGGAGATTTGGATGGAGCGAA 60.473 52.381 0.00 0.00 0.00 4.70
7389 8866 2.643551 GGAGATTTGGATGGAGCGAAA 58.356 47.619 0.00 0.00 0.00 3.46
7390 8867 2.356069 GGAGATTTGGATGGAGCGAAAC 59.644 50.000 0.00 0.00 0.00 2.78
7391 8868 2.009774 AGATTTGGATGGAGCGAAACG 58.990 47.619 0.00 0.00 0.00 3.60
7403 8880 3.173247 CGAAACGCTTGGGTTTTCC 57.827 52.632 15.13 5.05 40.05 3.13
7404 8881 0.659123 CGAAACGCTTGGGTTTTCCG 60.659 55.000 15.13 11.74 40.05 4.30
7405 8882 0.382873 GAAACGCTTGGGTTTTCCGT 59.617 50.000 15.13 0.00 40.05 4.69
7406 8883 1.603326 GAAACGCTTGGGTTTTCCGTA 59.397 47.619 15.13 0.00 40.05 4.02
7407 8884 1.677942 AACGCTTGGGTTTTCCGTAA 58.322 45.000 0.00 0.00 41.82 3.18
7408 8885 1.900245 ACGCTTGGGTTTTCCGTAAT 58.100 45.000 0.00 0.00 41.82 1.89
7409 8886 3.056588 ACGCTTGGGTTTTCCGTAATA 57.943 42.857 0.00 0.00 41.82 0.98
7410 8887 2.743664 ACGCTTGGGTTTTCCGTAATAC 59.256 45.455 0.00 0.00 41.82 1.89
7411 8888 2.096335 CGCTTGGGTTTTCCGTAATACC 59.904 50.000 0.00 0.00 41.82 2.73
7412 8889 2.096335 GCTTGGGTTTTCCGTAATACCG 59.904 50.000 0.00 0.00 37.52 4.02
7413 8890 1.736612 TGGGTTTTCCGTAATACCGC 58.263 50.000 0.00 0.00 37.52 5.68
7414 8891 0.652071 GGGTTTTCCGTAATACCGCG 59.348 55.000 0.00 0.00 37.52 6.46
7419 8896 3.122850 CCGTAATACCGCGGTCCT 58.877 61.111 38.01 25.06 42.73 3.85
7420 8897 1.299620 CCGTAATACCGCGGTCCTG 60.300 63.158 38.01 20.44 42.73 3.86
7421 8898 1.299620 CGTAATACCGCGGTCCTGG 60.300 63.158 38.01 17.72 0.00 4.45
7422 8899 1.818555 GTAATACCGCGGTCCTGGT 59.181 57.895 38.01 18.48 42.34 4.00
7423 8900 1.032014 GTAATACCGCGGTCCTGGTA 58.968 55.000 38.01 17.72 44.40 3.25
7424 8901 1.000938 GTAATACCGCGGTCCTGGTAG 60.001 57.143 38.01 2.09 43.58 3.18
7425 8902 1.397390 AATACCGCGGTCCTGGTAGG 61.397 60.000 38.01 1.18 43.58 3.18
7426 8903 2.288642 ATACCGCGGTCCTGGTAGGA 62.289 60.000 38.01 15.03 43.58 2.94
7427 8904 2.898920 TACCGCGGTCCTGGTAGGAG 62.899 65.000 38.01 0.28 46.90 3.69
7428 8905 2.754658 CGCGGTCCTGGTAGGAGT 60.755 66.667 0.00 0.00 46.90 3.85
7429 8906 2.893398 GCGGTCCTGGTAGGAGTG 59.107 66.667 0.00 0.00 46.90 3.51
7430 8907 1.982938 GCGGTCCTGGTAGGAGTGT 60.983 63.158 0.00 0.00 46.90 3.55
7431 8908 1.542187 GCGGTCCTGGTAGGAGTGTT 61.542 60.000 0.00 0.00 46.90 3.32
7432 8909 1.843368 CGGTCCTGGTAGGAGTGTTA 58.157 55.000 0.00 0.00 46.90 2.41
7433 8910 1.749634 CGGTCCTGGTAGGAGTGTTAG 59.250 57.143 0.00 0.00 46.90 2.34
7434 8911 2.817665 GGTCCTGGTAGGAGTGTTAGT 58.182 52.381 0.00 0.00 46.90 2.24
7435 8912 2.759535 GGTCCTGGTAGGAGTGTTAGTC 59.240 54.545 0.00 0.00 46.90 2.59
7436 8913 2.422832 GTCCTGGTAGGAGTGTTAGTCG 59.577 54.545 0.00 0.00 46.90 4.18
7437 8914 2.040813 TCCTGGTAGGAGTGTTAGTCGT 59.959 50.000 0.00 0.00 40.06 4.34
7438 8915 2.422832 CCTGGTAGGAGTGTTAGTCGTC 59.577 54.545 0.00 0.00 37.67 4.20
7439 8916 3.079578 CTGGTAGGAGTGTTAGTCGTCA 58.920 50.000 0.00 0.00 0.00 4.35
7440 8917 3.489355 TGGTAGGAGTGTTAGTCGTCAA 58.511 45.455 0.00 0.00 0.00 3.18
7441 8918 3.504906 TGGTAGGAGTGTTAGTCGTCAAG 59.495 47.826 0.00 0.00 0.00 3.02
7442 8919 3.755378 GGTAGGAGTGTTAGTCGTCAAGA 59.245 47.826 0.00 0.00 0.00 3.02
7443 8920 4.398673 GGTAGGAGTGTTAGTCGTCAAGAT 59.601 45.833 0.00 0.00 0.00 2.40
7444 8921 5.105837 GGTAGGAGTGTTAGTCGTCAAGATT 60.106 44.000 0.00 0.00 0.00 2.40
7445 8922 6.094603 GGTAGGAGTGTTAGTCGTCAAGATTA 59.905 42.308 0.00 0.00 0.00 1.75
7446 8923 6.585695 AGGAGTGTTAGTCGTCAAGATTAA 57.414 37.500 0.00 0.00 0.00 1.40
7447 8924 6.989659 AGGAGTGTTAGTCGTCAAGATTAAA 58.010 36.000 0.00 0.00 33.68 1.52
7448 8925 7.091443 AGGAGTGTTAGTCGTCAAGATTAAAG 58.909 38.462 0.00 0.00 33.68 1.85
7449 8926 7.039923 AGGAGTGTTAGTCGTCAAGATTAAAGA 60.040 37.037 0.00 0.00 33.68 2.52
7450 8927 7.760340 GGAGTGTTAGTCGTCAAGATTAAAGAT 59.240 37.037 0.00 0.00 33.68 2.40
7451 8928 8.467402 AGTGTTAGTCGTCAAGATTAAAGATG 57.533 34.615 0.00 0.00 33.68 2.90
7452 8929 8.304596 AGTGTTAGTCGTCAAGATTAAAGATGA 58.695 33.333 0.00 0.00 33.68 2.92
7453 8930 8.922676 GTGTTAGTCGTCAAGATTAAAGATGAA 58.077 33.333 0.00 0.00 33.68 2.57
7454 8931 9.653287 TGTTAGTCGTCAAGATTAAAGATGAAT 57.347 29.630 0.00 0.00 33.68 2.57
7455 8932 9.907576 GTTAGTCGTCAAGATTAAAGATGAATG 57.092 33.333 0.00 0.00 33.68 2.67
7456 8933 7.009568 AGTCGTCAAGATTAAAGATGAATGC 57.990 36.000 0.00 0.00 0.00 3.56
7457 8934 6.820656 AGTCGTCAAGATTAAAGATGAATGCT 59.179 34.615 0.00 0.00 0.00 3.79
7458 8935 7.010923 AGTCGTCAAGATTAAAGATGAATGCTC 59.989 37.037 0.00 0.00 0.00 4.26
7459 8936 6.019559 TCGTCAAGATTAAAGATGAATGCTCG 60.020 38.462 0.00 0.00 0.00 5.03
7460 8937 5.906285 GTCAAGATTAAAGATGAATGCTCGC 59.094 40.000 0.00 0.00 0.00 5.03
7461 8938 5.819379 TCAAGATTAAAGATGAATGCTCGCT 59.181 36.000 0.00 0.00 0.00 4.93
7462 8939 6.317140 TCAAGATTAAAGATGAATGCTCGCTT 59.683 34.615 0.00 0.00 0.00 4.68
7463 8940 6.690194 AGATTAAAGATGAATGCTCGCTTT 57.310 33.333 0.00 0.00 34.81 3.51
7464 8941 6.493116 AGATTAAAGATGAATGCTCGCTTTG 58.507 36.000 0.00 0.00 33.45 2.77
7465 8942 5.878332 TTAAAGATGAATGCTCGCTTTGA 57.122 34.783 0.00 0.00 33.45 2.69
7466 8943 4.771590 AAAGATGAATGCTCGCTTTGAA 57.228 36.364 0.00 0.00 31.42 2.69
7467 8944 4.352600 AAGATGAATGCTCGCTTTGAAG 57.647 40.909 0.00 0.00 0.00 3.02
7476 8953 2.259511 GCTTTGAAGCCTTGCGGG 59.740 61.111 4.38 0.00 46.20 6.13
7505 8982 7.935338 AAGCATTTGTGTAATATTATGCTGC 57.065 32.000 17.61 11.92 45.59 5.25
7506 8983 6.144854 AGCATTTGTGTAATATTATGCTGCG 58.855 36.000 16.62 0.00 44.88 5.18
7507 8984 6.017192 AGCATTTGTGTAATATTATGCTGCGA 60.017 34.615 16.62 0.00 44.88 5.10
7508 8985 6.303970 GCATTTGTGTAATATTATGCTGCGAG 59.696 38.462 10.15 0.00 36.39 5.03
7509 8986 7.575365 CATTTGTGTAATATTATGCTGCGAGA 58.425 34.615 0.00 0.00 0.00 4.04
7510 8987 6.769608 TTGTGTAATATTATGCTGCGAGAG 57.230 37.500 0.00 0.00 0.00 3.20
7522 8999 3.288484 CGAGAGCAGTGGCCTGTA 58.712 61.111 3.32 0.00 42.56 2.74
7523 9000 1.591703 CGAGAGCAGTGGCCTGTAA 59.408 57.895 3.32 0.00 42.56 2.41
7524 9001 0.176680 CGAGAGCAGTGGCCTGTAAT 59.823 55.000 3.32 0.00 42.56 1.89
7525 9002 1.804372 CGAGAGCAGTGGCCTGTAATC 60.804 57.143 3.32 0.00 42.56 1.75
7526 9003 1.208052 GAGAGCAGTGGCCTGTAATCA 59.792 52.381 3.32 0.00 42.56 2.57
7527 9004 1.209019 AGAGCAGTGGCCTGTAATCAG 59.791 52.381 3.32 0.00 42.56 2.90
7546 9023 2.967270 GCCTTTGGCCATCAACTCT 58.033 52.632 6.09 0.00 44.06 3.24
7547 9024 2.128771 GCCTTTGGCCATCAACTCTA 57.871 50.000 6.09 0.00 44.06 2.43
7548 9025 2.446435 GCCTTTGGCCATCAACTCTAA 58.554 47.619 6.09 0.00 44.06 2.10
7549 9026 2.825532 GCCTTTGGCCATCAACTCTAAA 59.174 45.455 6.09 0.00 44.06 1.85
7550 9027 3.367395 GCCTTTGGCCATCAACTCTAAAC 60.367 47.826 6.09 0.00 44.06 2.01
7551 9028 4.082125 CCTTTGGCCATCAACTCTAAACT 58.918 43.478 6.09 0.00 34.67 2.66
7552 9029 4.156739 CCTTTGGCCATCAACTCTAAACTC 59.843 45.833 6.09 0.00 34.67 3.01
7553 9030 3.350219 TGGCCATCAACTCTAAACTCC 57.650 47.619 0.00 0.00 0.00 3.85
7554 9031 2.912956 TGGCCATCAACTCTAAACTCCT 59.087 45.455 0.00 0.00 0.00 3.69
7555 9032 3.055094 TGGCCATCAACTCTAAACTCCTC 60.055 47.826 0.00 0.00 0.00 3.71
7556 9033 3.198853 GGCCATCAACTCTAAACTCCTCT 59.801 47.826 0.00 0.00 0.00 3.69
7557 9034 4.438148 GCCATCAACTCTAAACTCCTCTC 58.562 47.826 0.00 0.00 0.00 3.20
7558 9035 4.161377 GCCATCAACTCTAAACTCCTCTCT 59.839 45.833 0.00 0.00 0.00 3.10
7559 9036 5.337975 GCCATCAACTCTAAACTCCTCTCTT 60.338 44.000 0.00 0.00 0.00 2.85
7560 9037 6.127310 GCCATCAACTCTAAACTCCTCTCTTA 60.127 42.308 0.00 0.00 0.00 2.10
7561 9038 7.418483 GCCATCAACTCTAAACTCCTCTCTTAT 60.418 40.741 0.00 0.00 0.00 1.73
7562 9039 8.482128 CCATCAACTCTAAACTCCTCTCTTATT 58.518 37.037 0.00 0.00 0.00 1.40
7563 9040 9.528018 CATCAACTCTAAACTCCTCTCTTATTC 57.472 37.037 0.00 0.00 0.00 1.75
7564 9041 8.651589 TCAACTCTAAACTCCTCTCTTATTCA 57.348 34.615 0.00 0.00 0.00 2.57
7565 9042 9.090103 TCAACTCTAAACTCCTCTCTTATTCAA 57.910 33.333 0.00 0.00 0.00 2.69
7566 9043 9.883142 CAACTCTAAACTCCTCTCTTATTCAAT 57.117 33.333 0.00 0.00 0.00 2.57
7575 9052 8.907885 ACTCCTCTCTTATTCAATAAAAATGGC 58.092 33.333 0.00 0.00 0.00 4.40
7576 9053 8.821686 TCCTCTCTTATTCAATAAAAATGGCA 57.178 30.769 0.00 0.00 0.00 4.92
7577 9054 9.253832 TCCTCTCTTATTCAATAAAAATGGCAA 57.746 29.630 0.00 0.00 0.00 4.52
7578 9055 9.874205 CCTCTCTTATTCAATAAAAATGGCAAA 57.126 29.630 0.00 0.00 0.00 3.68
7586 9063 9.628746 ATTCAATAAAAATGGCAAATCTTTTGC 57.371 25.926 14.88 14.88 44.22 3.68
7596 9073 5.898630 GCAAATCTTTTGCCTCGTTTTAA 57.101 34.783 12.74 0.00 39.38 1.52
7597 9074 6.280537 GCAAATCTTTTGCCTCGTTTTAAA 57.719 33.333 12.74 0.00 39.38 1.52
7598 9075 6.710611 GCAAATCTTTTGCCTCGTTTTAAAA 58.289 32.000 12.74 0.00 39.38 1.52
7625 9102 1.484653 AGTGCACCAAACCCCTTTTTC 59.515 47.619 14.63 0.00 0.00 2.29
7631 9109 2.769663 ACCAAACCCCTTTTTCTGGAAC 59.230 45.455 0.00 0.00 0.00 3.62
7639 9117 4.765339 CCCCTTTTTCTGGAACGACTAAAT 59.235 41.667 0.00 0.00 0.00 1.40
7704 9182 4.645136 TGGTCTGCTATATTCAAGAGACGT 59.355 41.667 0.00 0.00 32.32 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 108 1.079503 CTACAAAGCGGAGAAGTGGC 58.920 55.000 0.00 0.00 0.00 5.01
175 178 4.347813 CAGAGTACAAACCACGGTTTTTG 58.652 43.478 11.52 5.37 44.84 2.44
176 179 3.181494 GCAGAGTACAAACCACGGTTTTT 60.181 43.478 11.52 8.40 44.84 1.94
205 208 2.472695 TTGTCTAGCTTTGGCGACAT 57.527 45.000 0.00 0.00 44.37 3.06
206 209 1.871039 GTTTGTCTAGCTTTGGCGACA 59.129 47.619 0.00 0.00 44.37 4.35
292 295 2.314647 CCATCGCGTGTTCACCGTT 61.315 57.895 5.77 3.93 0.00 4.44
320 325 5.890752 TCTAGTATTTCTCTCCTCTCCGA 57.109 43.478 0.00 0.00 0.00 4.55
350 355 2.157085 GTCCTAAGTTTTTCGCCTGTCG 59.843 50.000 0.00 0.00 40.15 4.35
353 358 2.742589 GAGGTCCTAAGTTTTTCGCCTG 59.257 50.000 0.00 0.00 0.00 4.85
357 362 5.941948 AATGTGAGGTCCTAAGTTTTTCG 57.058 39.130 0.00 0.00 0.00 3.46
358 363 8.626526 TGTAAAATGTGAGGTCCTAAGTTTTTC 58.373 33.333 0.00 0.00 0.00 2.29
385 391 4.580580 GTGAGGTCCACTGTCAAAGAAAAT 59.419 41.667 0.00 0.00 42.44 1.82
390 396 2.620251 TGTGAGGTCCACTGTCAAAG 57.380 50.000 0.00 0.00 45.86 2.77
451 457 5.587043 TCTGTTGTGATTCGTTTGGTAGTTT 59.413 36.000 0.00 0.00 0.00 2.66
506 512 3.721706 GGTGGAGCCTCCCCAGTG 61.722 72.222 8.62 0.00 35.03 3.66
507 513 3.947041 AGGTGGAGCCTCCCCAGT 61.947 66.667 17.39 0.00 46.96 4.00
528 534 3.901797 GACCAGCCCCAACTCCACG 62.902 68.421 0.00 0.00 0.00 4.94
550 556 6.092807 GTGTCAGACTGGGATTTGAATTAGAC 59.907 42.308 1.81 0.00 0.00 2.59
565 571 1.405461 CGGTGTAACGTGTCAGACTG 58.595 55.000 1.31 0.00 38.12 3.51
842 869 1.350019 GGTTATACGGGAATGGGAGGG 59.650 57.143 0.00 0.00 0.00 4.30
843 870 1.350019 GGGTTATACGGGAATGGGAGG 59.650 57.143 0.00 0.00 0.00 4.30
844 871 1.350019 GGGGTTATACGGGAATGGGAG 59.650 57.143 0.00 0.00 0.00 4.30
845 872 1.437397 GGGGTTATACGGGAATGGGA 58.563 55.000 0.00 0.00 0.00 4.37
880 908 1.074850 GAGGAAGAGAGGGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
1079 1129 4.200283 GAGGCAGGGAGAGTCGCG 62.200 72.222 0.00 0.00 34.19 5.87
1118 1168 3.209812 TCAGGGCGGATCGAGTCG 61.210 66.667 6.09 6.09 0.00 4.18
1148 1198 1.446272 CCTGGAAGACGAAGACCGC 60.446 63.158 0.00 0.00 43.32 5.68
1738 1788 2.126307 CGAGGCACACTCTCCACG 60.126 66.667 0.00 0.00 44.33 4.94
1951 2001 2.111043 CACAACAGGCACCTCCGT 59.889 61.111 0.00 0.00 40.77 4.69
1952 2002 2.669569 CCACAACAGGCACCTCCG 60.670 66.667 0.00 0.00 40.77 4.63
2216 2266 9.182214 ACACAAGATTTCAATATATGCAGAACT 57.818 29.630 0.00 0.00 0.00 3.01
2389 2443 6.769822 AGCTCACTAATATTTATTGTGCTGCT 59.230 34.615 14.45 15.01 34.63 4.24
2390 2444 6.963796 AGCTCACTAATATTTATTGTGCTGC 58.036 36.000 14.45 13.80 32.74 5.25
2391 2445 9.443283 GAAAGCTCACTAATATTTATTGTGCTG 57.557 33.333 15.31 8.54 31.20 4.41
2500 2556 6.339730 ACATCAACAAGCTTCAAACAATTCA 58.660 32.000 0.00 0.00 0.00 2.57
2696 2752 1.326852 GAGCATCAACAGCGACAGATG 59.673 52.381 7.57 7.57 40.52 2.90
2697 2753 1.649664 GAGCATCAACAGCGACAGAT 58.350 50.000 0.00 0.00 37.01 2.90
2703 2759 0.877071 AAGTTGGAGCATCAACAGCG 59.123 50.000 19.49 0.00 46.74 5.18
2812 2868 5.745312 TGTCCAGTATTTCTGTCAGATGT 57.255 39.130 2.68 0.00 42.19 3.06
2830 2886 6.033831 CGCATCAACTTCAACAAATATTGTCC 59.966 38.462 0.00 0.00 44.59 4.02
2841 2897 1.055338 GCAAGCGCATCAACTTCAAC 58.945 50.000 11.47 0.00 38.36 3.18
2942 2998 4.058817 GGCTTCTAACTTGGATACCATCG 58.941 47.826 0.00 0.00 31.53 3.84
3266 3324 7.680442 TGCTCATGCTTGTATAGTTAAACAA 57.320 32.000 0.00 0.00 40.48 2.83
3275 3341 6.470278 AGAATGCTATGCTCATGCTTGTATA 58.530 36.000 0.00 0.00 40.48 1.47
3424 3493 5.506815 CCATGATCATTTGGACCAGAAATCG 60.507 44.000 9.41 0.00 34.81 3.34
3501 3570 2.587060 TACATCCATCCTTCCCTGGT 57.413 50.000 0.00 0.00 34.03 4.00
3537 3606 9.263446 AGTAGGTGATACAAACTTTATCCACTA 57.737 33.333 0.00 0.00 36.79 2.74
3538 3607 8.147244 AGTAGGTGATACAAACTTTATCCACT 57.853 34.615 0.00 0.00 36.79 4.00
3539 3608 7.222224 CGAGTAGGTGATACAAACTTTATCCAC 59.778 40.741 0.00 0.00 36.79 4.02
3642 3711 4.537015 GGTTTGAAAATCTCCAACTCACG 58.463 43.478 0.00 0.00 31.72 4.35
3739 3808 7.176589 AGAACCTTGTAAATTGAACACCAAA 57.823 32.000 0.00 0.00 38.43 3.28
3740 3809 6.783708 AGAACCTTGTAAATTGAACACCAA 57.216 33.333 0.00 0.00 39.41 3.67
3741 3810 6.378564 TCAAGAACCTTGTAAATTGAACACCA 59.621 34.615 6.59 0.00 0.00 4.17
3742 3811 6.801575 TCAAGAACCTTGTAAATTGAACACC 58.198 36.000 6.59 0.00 0.00 4.16
3743 3812 6.918022 CCTCAAGAACCTTGTAAATTGAACAC 59.082 38.462 6.59 0.00 0.00 3.32
3744 3813 6.831353 TCCTCAAGAACCTTGTAAATTGAACA 59.169 34.615 6.59 0.00 0.00 3.18
3745 3814 7.272037 TCCTCAAGAACCTTGTAAATTGAAC 57.728 36.000 6.59 0.00 0.00 3.18
3746 3815 7.889873 TTCCTCAAGAACCTTGTAAATTGAA 57.110 32.000 6.59 1.13 0.00 2.69
3747 3816 8.477419 AATTCCTCAAGAACCTTGTAAATTGA 57.523 30.769 6.59 0.00 37.29 2.57
3751 3820 9.807921 AGATAAATTCCTCAAGAACCTTGTAAA 57.192 29.630 6.59 1.67 37.29 2.01
3752 3821 9.807921 AAGATAAATTCCTCAAGAACCTTGTAA 57.192 29.630 6.59 1.93 37.29 2.41
3753 3822 9.231297 CAAGATAAATTCCTCAAGAACCTTGTA 57.769 33.333 6.59 0.00 37.29 2.41
3754 3823 7.725844 ACAAGATAAATTCCTCAAGAACCTTGT 59.274 33.333 0.00 0.00 37.29 3.16
3755 3824 8.115490 ACAAGATAAATTCCTCAAGAACCTTG 57.885 34.615 0.00 0.00 37.29 3.61
3756 3825 8.712228 AACAAGATAAATTCCTCAAGAACCTT 57.288 30.769 0.00 0.00 37.29 3.50
3757 3826 8.712228 AAACAAGATAAATTCCTCAAGAACCT 57.288 30.769 0.00 0.00 37.29 3.50
3758 3827 9.411801 GAAAACAAGATAAATTCCTCAAGAACC 57.588 33.333 0.00 0.00 37.29 3.62
3801 3870 9.355916 AGTCACATAGTAGCATATGACTAGAAA 57.644 33.333 6.97 0.00 43.70 2.52
3802 3871 8.787852 CAGTCACATAGTAGCATATGACTAGAA 58.212 37.037 6.97 0.00 43.69 2.10
3803 3872 8.157476 TCAGTCACATAGTAGCATATGACTAGA 58.843 37.037 6.97 0.00 43.69 2.43
3804 3873 8.233868 GTCAGTCACATAGTAGCATATGACTAG 58.766 40.741 6.97 3.85 43.69 2.57
3805 3874 7.719633 TGTCAGTCACATAGTAGCATATGACTA 59.280 37.037 6.97 6.81 43.69 2.59
3806 3875 6.547510 TGTCAGTCACATAGTAGCATATGACT 59.452 38.462 6.97 4.56 45.80 3.41
3807 3876 6.739112 TGTCAGTCACATAGTAGCATATGAC 58.261 40.000 6.97 0.00 36.76 3.06
3808 3877 6.959639 TGTCAGTCACATAGTAGCATATGA 57.040 37.500 6.97 0.00 36.76 2.15
3809 3878 8.599055 AAATGTCAGTCACATAGTAGCATATG 57.401 34.615 0.00 0.00 45.77 1.78
3812 3881 9.618890 AATTAAATGTCAGTCACATAGTAGCAT 57.381 29.630 0.00 0.00 45.77 3.79
3813 3882 8.882736 CAATTAAATGTCAGTCACATAGTAGCA 58.117 33.333 0.00 0.00 45.77 3.49
3814 3883 8.883731 ACAATTAAATGTCAGTCACATAGTAGC 58.116 33.333 0.00 0.00 45.77 3.58
3817 3886 8.023128 GCAACAATTAAATGTCAGTCACATAGT 58.977 33.333 0.00 0.00 45.77 2.12
3818 3887 8.239314 AGCAACAATTAAATGTCAGTCACATAG 58.761 33.333 0.00 0.00 45.77 2.23
3819 3888 8.109705 AGCAACAATTAAATGTCAGTCACATA 57.890 30.769 0.00 0.00 45.77 2.29
3821 3890 6.389830 AGCAACAATTAAATGTCAGTCACA 57.610 33.333 0.00 0.00 40.18 3.58
3822 3891 6.363357 GGAAGCAACAATTAAATGTCAGTCAC 59.637 38.462 0.00 0.00 31.81 3.67
3823 3892 6.040278 TGGAAGCAACAATTAAATGTCAGTCA 59.960 34.615 0.00 0.00 31.81 3.41
3824 3893 6.363357 GTGGAAGCAACAATTAAATGTCAGTC 59.637 38.462 0.00 0.00 31.81 3.51
3825 3894 6.040842 AGTGGAAGCAACAATTAAATGTCAGT 59.959 34.615 0.00 0.00 31.81 3.41
3826 3895 6.449698 AGTGGAAGCAACAATTAAATGTCAG 58.550 36.000 0.00 0.00 31.81 3.51
3827 3896 6.403866 AGTGGAAGCAACAATTAAATGTCA 57.596 33.333 0.00 0.00 31.81 3.58
3828 3897 6.701400 ACAAGTGGAAGCAACAATTAAATGTC 59.299 34.615 0.00 0.00 31.81 3.06
3829 3898 6.581712 ACAAGTGGAAGCAACAATTAAATGT 58.418 32.000 0.00 0.00 34.24 2.71
3830 3899 7.439056 AGAACAAGTGGAAGCAACAATTAAATG 59.561 33.333 0.00 0.00 0.00 2.32
3831 3900 7.500141 AGAACAAGTGGAAGCAACAATTAAAT 58.500 30.769 0.00 0.00 0.00 1.40
3832 3901 6.872920 AGAACAAGTGGAAGCAACAATTAAA 58.127 32.000 0.00 0.00 0.00 1.52
3833 3902 6.463995 AGAACAAGTGGAAGCAACAATTAA 57.536 33.333 0.00 0.00 0.00 1.40
3834 3903 6.463995 AAGAACAAGTGGAAGCAACAATTA 57.536 33.333 0.00 0.00 0.00 1.40
3835 3904 5.343307 AAGAACAAGTGGAAGCAACAATT 57.657 34.783 0.00 0.00 0.00 2.32
3836 3905 5.111293 CAAAGAACAAGTGGAAGCAACAAT 58.889 37.500 0.00 0.00 0.00 2.71
3837 3906 4.493547 CAAAGAACAAGTGGAAGCAACAA 58.506 39.130 0.00 0.00 0.00 2.83
3838 3907 3.119173 CCAAAGAACAAGTGGAAGCAACA 60.119 43.478 0.00 0.00 34.05 3.33
3839 3908 3.119137 ACCAAAGAACAAGTGGAAGCAAC 60.119 43.478 0.00 0.00 36.23 4.17
3840 3909 3.096092 ACCAAAGAACAAGTGGAAGCAA 58.904 40.909 0.00 0.00 36.23 3.91
3841 3910 2.426738 CACCAAAGAACAAGTGGAAGCA 59.573 45.455 0.00 0.00 36.23 3.91
3842 3911 2.427095 ACACCAAAGAACAAGTGGAAGC 59.573 45.455 0.00 0.00 36.23 3.86
3843 3912 4.157656 TGAACACCAAAGAACAAGTGGAAG 59.842 41.667 0.00 0.00 36.23 3.46
3844 3913 4.082845 TGAACACCAAAGAACAAGTGGAA 58.917 39.130 0.00 0.00 36.23 3.53
3845 3914 3.691575 TGAACACCAAAGAACAAGTGGA 58.308 40.909 0.00 0.00 36.23 4.02
3846 3915 4.448537 TTGAACACCAAAGAACAAGTGG 57.551 40.909 0.00 0.00 38.46 4.00
3847 3916 6.966435 AAATTGAACACCAAAGAACAAGTG 57.034 33.333 0.00 0.00 38.43 3.16
3848 3917 7.607250 TGTAAATTGAACACCAAAGAACAAGT 58.393 30.769 0.00 0.00 38.43 3.16
3849 3918 8.472683 TTGTAAATTGAACACCAAAGAACAAG 57.527 30.769 0.00 0.00 38.43 3.16
3850 3919 7.547370 CCTTGTAAATTGAACACCAAAGAACAA 59.453 33.333 0.00 0.00 38.43 2.83
3851 3920 7.038659 CCTTGTAAATTGAACACCAAAGAACA 58.961 34.615 0.00 0.00 38.43 3.18
3852 3921 7.039270 ACCTTGTAAATTGAACACCAAAGAAC 58.961 34.615 0.00 0.00 38.43 3.01
3853 3922 7.176589 ACCTTGTAAATTGAACACCAAAGAA 57.823 32.000 0.00 0.00 38.43 2.52
3854 3923 6.783708 ACCTTGTAAATTGAACACCAAAGA 57.216 33.333 0.00 0.00 38.43 2.52
3855 3924 7.264947 AGAACCTTGTAAATTGAACACCAAAG 58.735 34.615 0.00 0.00 38.43 2.77
4073 4145 7.207383 TCACACATAAATAGAGGTGTTATCCG 58.793 38.462 0.00 0.00 42.16 4.18
4136 4209 0.895559 TGCAGGAAGAGAGACGAGCA 60.896 55.000 0.00 0.00 0.00 4.26
4159 4232 1.145945 GATGGAGGGGAAAGGGGATTC 59.854 57.143 0.00 0.00 0.00 2.52
4302 4375 6.573434 AGTTCATGCAGTAACGAATATCAGA 58.427 36.000 7.96 0.00 0.00 3.27
4560 4654 8.803235 GTTGGGTAAGATAGACCAAAAGAAAAT 58.197 33.333 0.00 0.00 43.88 1.82
4561 4655 7.780745 TGTTGGGTAAGATAGACCAAAAGAAAA 59.219 33.333 0.00 0.00 43.88 2.29
4562 4656 7.291566 TGTTGGGTAAGATAGACCAAAAGAAA 58.708 34.615 0.00 0.00 43.88 2.52
4563 4657 6.843752 TGTTGGGTAAGATAGACCAAAAGAA 58.156 36.000 0.00 0.00 43.88 2.52
4564 4658 6.442541 TGTTGGGTAAGATAGACCAAAAGA 57.557 37.500 0.00 0.00 43.88 2.52
4565 4659 6.472887 TCTGTTGGGTAAGATAGACCAAAAG 58.527 40.000 6.20 6.20 45.54 2.27
4566 4660 6.442541 TCTGTTGGGTAAGATAGACCAAAA 57.557 37.500 0.00 0.00 43.88 2.44
4567 4661 5.570844 GCTCTGTTGGGTAAGATAGACCAAA 60.571 44.000 0.00 0.00 43.88 3.28
4568 4662 4.081087 GCTCTGTTGGGTAAGATAGACCAA 60.081 45.833 0.00 0.00 40.44 3.67
4569 4663 3.451178 GCTCTGTTGGGTAAGATAGACCA 59.549 47.826 0.00 0.00 38.86 4.02
4570 4664 3.451178 TGCTCTGTTGGGTAAGATAGACC 59.549 47.826 0.00 0.00 36.12 3.85
4571 4665 4.737855 TGCTCTGTTGGGTAAGATAGAC 57.262 45.455 0.00 0.00 0.00 2.59
4572 4666 5.304614 GGTATGCTCTGTTGGGTAAGATAGA 59.695 44.000 0.00 0.00 0.00 1.98
4573 4667 5.070446 TGGTATGCTCTGTTGGGTAAGATAG 59.930 44.000 0.00 0.00 0.00 2.08
4574 4668 4.966168 TGGTATGCTCTGTTGGGTAAGATA 59.034 41.667 0.00 0.00 0.00 1.98
4711 4805 4.236935 CATGTGTGGTCCAAAATAAGCAC 58.763 43.478 0.00 0.00 42.67 4.40
4970 5065 9.541143 CCAAAACCTTGTACATTCTTACATTTT 57.459 29.630 0.00 0.00 31.98 1.82
4971 5066 8.700973 ACCAAAACCTTGTACATTCTTACATTT 58.299 29.630 0.00 0.00 31.98 2.32
4972 5067 8.245195 ACCAAAACCTTGTACATTCTTACATT 57.755 30.769 0.00 0.00 31.98 2.71
4973 5068 7.724061 AGACCAAAACCTTGTACATTCTTACAT 59.276 33.333 0.00 0.00 31.98 2.29
5053 5148 8.959548 GGATATGTTATGCATCCATTGTCATTA 58.040 33.333 14.80 0.00 38.50 1.90
5054 5149 7.362315 CGGATATGTTATGCATCCATTGTCATT 60.362 37.037 14.80 0.00 38.53 2.57
5055 5150 6.094464 CGGATATGTTATGCATCCATTGTCAT 59.906 38.462 14.80 5.04 38.53 3.06
5056 5151 5.412286 CGGATATGTTATGCATCCATTGTCA 59.588 40.000 14.80 0.97 38.53 3.58
5057 5152 5.412594 ACGGATATGTTATGCATCCATTGTC 59.587 40.000 14.80 13.00 38.53 3.18
5058 5153 5.316167 ACGGATATGTTATGCATCCATTGT 58.684 37.500 14.80 6.77 38.53 2.71
5059 5154 5.885230 ACGGATATGTTATGCATCCATTG 57.115 39.130 14.80 7.56 38.53 2.82
5060 5155 5.769662 ACAACGGATATGTTATGCATCCATT 59.230 36.000 14.80 0.00 38.53 3.16
5061 5156 5.181811 CACAACGGATATGTTATGCATCCAT 59.818 40.000 0.19 9.72 38.53 3.41
5062 5157 4.514816 CACAACGGATATGTTATGCATCCA 59.485 41.667 0.19 1.23 38.53 3.41
5063 5158 4.754618 TCACAACGGATATGTTATGCATCC 59.245 41.667 0.19 0.00 38.94 3.51
5064 5159 5.922739 TCACAACGGATATGTTATGCATC 57.077 39.130 0.19 0.00 38.94 3.91
5065 5160 5.764686 ACATCACAACGGATATGTTATGCAT 59.235 36.000 3.79 3.79 36.38 3.96
5066 5161 5.122519 ACATCACAACGGATATGTTATGCA 58.877 37.500 0.00 0.00 36.38 3.96
5067 5162 5.673337 ACATCACAACGGATATGTTATGC 57.327 39.130 0.00 0.00 36.38 3.14
5068 5163 7.946655 ACTACATCACAACGGATATGTTATG 57.053 36.000 0.00 0.00 38.02 1.90
5070 5165 9.471084 CATAACTACATCACAACGGATATGTTA 57.529 33.333 0.00 0.00 34.54 2.41
5071 5166 7.042051 GCATAACTACATCACAACGGATATGTT 60.042 37.037 0.00 0.00 34.54 2.71
5072 5167 6.423905 GCATAACTACATCACAACGGATATGT 59.576 38.462 0.00 0.00 36.56 2.29
5073 5168 6.646653 AGCATAACTACATCACAACGGATATG 59.353 38.462 0.00 0.00 0.00 1.78
5074 5169 6.759272 AGCATAACTACATCACAACGGATAT 58.241 36.000 0.00 0.00 0.00 1.63
5075 5170 6.156748 AGCATAACTACATCACAACGGATA 57.843 37.500 0.00 0.00 0.00 2.59
5076 5171 5.023533 AGCATAACTACATCACAACGGAT 57.976 39.130 0.00 0.00 0.00 4.18
5077 5172 4.465632 AGCATAACTACATCACAACGGA 57.534 40.909 0.00 0.00 0.00 4.69
5078 5173 4.629634 TCAAGCATAACTACATCACAACGG 59.370 41.667 0.00 0.00 0.00 4.44
5079 5174 5.778161 TCAAGCATAACTACATCACAACG 57.222 39.130 0.00 0.00 0.00 4.10
5080 5175 7.133891 ACTTCAAGCATAACTACATCACAAC 57.866 36.000 0.00 0.00 0.00 3.32
5081 5176 7.744087 AACTTCAAGCATAACTACATCACAA 57.256 32.000 0.00 0.00 0.00 3.33
5082 5177 7.443879 TGAAACTTCAAGCATAACTACATCACA 59.556 33.333 0.00 0.00 33.55 3.58
5083 5178 7.806690 TGAAACTTCAAGCATAACTACATCAC 58.193 34.615 0.00 0.00 33.55 3.06
5084 5179 7.977789 TGAAACTTCAAGCATAACTACATCA 57.022 32.000 0.00 0.00 33.55 3.07
5138 5233 9.135189 ACAACAATACATGTGAGCCAAATATAT 57.865 29.630 9.11 0.00 42.99 0.86
5139 5234 8.518430 ACAACAATACATGTGAGCCAAATATA 57.482 30.769 9.11 0.00 42.99 0.86
5140 5235 7.408756 ACAACAATACATGTGAGCCAAATAT 57.591 32.000 9.11 0.00 42.99 1.28
5141 5236 6.832520 ACAACAATACATGTGAGCCAAATA 57.167 33.333 9.11 0.00 42.99 1.40
5142 5237 5.726980 ACAACAATACATGTGAGCCAAAT 57.273 34.783 9.11 0.00 42.99 2.32
5143 5238 5.288015 CAACAACAATACATGTGAGCCAAA 58.712 37.500 9.11 0.00 42.99 3.28
5144 5239 4.261952 CCAACAACAATACATGTGAGCCAA 60.262 41.667 9.11 0.00 42.99 4.52
5145 5240 3.255395 CCAACAACAATACATGTGAGCCA 59.745 43.478 9.11 0.00 42.99 4.75
5146 5241 3.836949 CCAACAACAATACATGTGAGCC 58.163 45.455 9.11 0.00 42.99 4.70
5147 5242 3.244976 GCCAACAACAATACATGTGAGC 58.755 45.455 9.11 0.00 42.99 4.26
5149 5244 3.888323 AGTGCCAACAACAATACATGTGA 59.112 39.130 9.11 0.00 42.99 3.58
5150 5245 4.241590 AGTGCCAACAACAATACATGTG 57.758 40.909 9.11 0.00 42.99 3.21
5152 5247 5.288015 TGAAAGTGCCAACAACAATACATG 58.712 37.500 0.00 0.00 0.00 3.21
5155 5250 6.257630 ACAAATGAAAGTGCCAACAACAATAC 59.742 34.615 0.00 0.00 0.00 1.89
5158 5253 4.573900 ACAAATGAAAGTGCCAACAACAA 58.426 34.783 0.00 0.00 0.00 2.83
5159 5254 4.199432 ACAAATGAAAGTGCCAACAACA 57.801 36.364 0.00 0.00 0.00 3.33
5160 5255 4.033932 GGAACAAATGAAAGTGCCAACAAC 59.966 41.667 0.00 0.00 33.35 3.32
5161 5256 4.187694 GGAACAAATGAAAGTGCCAACAA 58.812 39.130 0.00 0.00 33.35 2.83
5162 5257 3.196469 TGGAACAAATGAAAGTGCCAACA 59.804 39.130 0.00 0.00 40.51 3.33
5163 5258 3.791245 TGGAACAAATGAAAGTGCCAAC 58.209 40.909 0.00 0.00 40.51 3.77
5164 5259 3.450457 ACTGGAACAAATGAAAGTGCCAA 59.550 39.130 0.00 0.00 42.81 4.52
5165 5260 3.030291 ACTGGAACAAATGAAAGTGCCA 58.970 40.909 0.00 0.00 41.20 4.92
5166 5261 3.733443 ACTGGAACAAATGAAAGTGCC 57.267 42.857 0.00 0.00 38.70 5.01
5167 5262 6.756542 ACTTAAACTGGAACAAATGAAAGTGC 59.243 34.615 0.00 0.00 38.70 4.40
5168 5263 8.702163 AACTTAAACTGGAACAAATGAAAGTG 57.298 30.769 0.00 0.00 38.70 3.16
5250 5350 9.184062 CAGTTTAGCGTCACCGTATATAAATAA 57.816 33.333 0.00 0.00 36.15 1.40
5254 5354 6.375945 TCAGTTTAGCGTCACCGTATATAA 57.624 37.500 0.00 0.00 36.15 0.98
5292 5393 0.036765 ACCGGCGCACAGAATAAGAA 60.037 50.000 10.83 0.00 0.00 2.52
5326 5427 1.271656 ACTGACTTAGTGGCGTGGTAC 59.728 52.381 0.00 0.00 38.49 3.34
5342 5443 3.249189 GGGGTGGGACTGCACTGA 61.249 66.667 0.00 0.00 0.00 3.41
5415 5648 1.073284 GTGGGTGTGTGGAGTGGTAAT 59.927 52.381 0.00 0.00 0.00 1.89
5430 5663 0.892755 TTAGCGAGACGAATGTGGGT 59.107 50.000 0.00 0.00 0.00 4.51
5436 5670 4.808077 TCGTAAGATTAGCGAGACGAAT 57.192 40.909 0.00 0.00 45.01 3.34
5465 5699 6.403636 GCAATACGAGTCACATTCCAATTCTT 60.404 38.462 0.00 0.00 0.00 2.52
5470 5704 3.937814 AGCAATACGAGTCACATTCCAA 58.062 40.909 0.00 0.00 0.00 3.53
5471 5705 3.610040 AGCAATACGAGTCACATTCCA 57.390 42.857 0.00 0.00 0.00 3.53
5476 5710 1.621317 TCCCAAGCAATACGAGTCACA 59.379 47.619 0.00 0.00 0.00 3.58
5481 5715 2.332063 ACCATCCCAAGCAATACGAG 57.668 50.000 0.00 0.00 0.00 4.18
5483 5717 4.454504 GGTATTACCATCCCAAGCAATACG 59.545 45.833 8.03 0.00 38.42 3.06
5528 5762 7.461107 CATGACGAGTCGTAACCAATTTAAAT 58.539 34.615 19.93 0.00 41.37 1.40
5548 5782 3.118454 CGGGGTGTCGTGCATGAC 61.118 66.667 28.54 28.54 39.37 3.06
5551 5785 4.760047 GAGCGGGGTGTCGTGCAT 62.760 66.667 0.00 0.00 0.00 3.96
5570 5804 4.174762 GGTTAGAAGAACGACTCATCCAC 58.825 47.826 0.00 0.00 0.00 4.02
5572 5806 3.734293 CGGGTTAGAAGAACGACTCATCC 60.734 52.174 0.00 0.00 0.00 3.51
5580 5814 3.917988 ACTTTACCGGGTTAGAAGAACG 58.082 45.455 18.52 3.29 0.00 3.95
5591 5825 2.773993 TTCCTTGCTACTTTACCGGG 57.226 50.000 6.32 0.00 0.00 5.73
5593 5827 9.754382 TTACTATATTTCCTTGCTACTTTACCG 57.246 33.333 0.00 0.00 0.00 4.02
5666 5901 5.278957 CCAGGTTAGAAGATTGGTTGGTTTG 60.279 44.000 0.00 0.00 0.00 2.93
5795 6969 5.471456 CCTTGTCTCCACATAATTATCTGCC 59.529 44.000 0.00 0.00 30.55 4.85
5810 6984 3.055094 TGCACCTATTCTTCCTTGTCTCC 60.055 47.826 0.00 0.00 0.00 3.71
5815 6989 4.074970 ACTGTTGCACCTATTCTTCCTTG 58.925 43.478 0.00 0.00 0.00 3.61
5848 7022 4.634443 CCATGGGAAAAGTAGTAACGGAAG 59.366 45.833 2.85 0.00 0.00 3.46
5851 7025 2.681344 GCCATGGGAAAAGTAGTAACGG 59.319 50.000 15.13 0.00 0.00 4.44
5874 7048 9.778741 AATTAGTCCATGTGGTACATAGTAATG 57.221 33.333 0.00 0.00 44.52 1.90
5889 7063 4.511454 CCACGACCACATAATTAGTCCATG 59.489 45.833 0.00 0.00 0.00 3.66
5890 7064 4.703897 CCACGACCACATAATTAGTCCAT 58.296 43.478 0.00 0.00 0.00 3.41
5909 7111 3.809374 CTATTCCCCGCCTCGCCAC 62.809 68.421 0.00 0.00 0.00 5.01
5931 7133 4.822036 TTGTTTTCATTACCACTGGACG 57.178 40.909 0.71 0.00 0.00 4.79
5949 7151 7.921214 CGATGGACACTATAGTAACTGAATTGT 59.079 37.037 4.74 0.00 0.00 2.71
5975 7177 0.744281 CCCCGCATGGTGGTAAAATC 59.256 55.000 0.00 0.00 0.00 2.17
6015 7228 0.944311 ATGTGTCGCACTGGTCGTTC 60.944 55.000 10.54 0.00 35.11 3.95
6117 7363 9.877178 AGCCAAATATATATATATTAGCGAGCC 57.123 33.333 26.05 14.54 39.96 4.70
6282 7736 7.041576 TCAGCAATTAGATATGTGTGCTTCATC 60.042 37.037 5.20 0.00 40.22 2.92
6586 8040 0.872388 GTTGTTGTACTCGCCCCTTG 59.128 55.000 0.00 0.00 0.00 3.61
7046 8521 1.522668 TTTGCCATCTCAGGTGTTCG 58.477 50.000 0.00 0.00 0.00 3.95
7047 8522 5.126061 ACATAATTTGCCATCTCAGGTGTTC 59.874 40.000 0.00 0.00 0.00 3.18
7048 8523 5.018809 ACATAATTTGCCATCTCAGGTGTT 58.981 37.500 0.00 0.00 0.00 3.32
7049 8524 4.603131 ACATAATTTGCCATCTCAGGTGT 58.397 39.130 0.00 0.00 0.00 4.16
7050 8525 5.105635 ACAACATAATTTGCCATCTCAGGTG 60.106 40.000 0.00 0.00 0.00 4.00
7051 8526 5.018809 ACAACATAATTTGCCATCTCAGGT 58.981 37.500 0.00 0.00 0.00 4.00
7052 8527 5.587388 ACAACATAATTTGCCATCTCAGG 57.413 39.130 0.00 0.00 0.00 3.86
7053 8528 7.385752 ACAAAACAACATAATTTGCCATCTCAG 59.614 33.333 0.00 0.00 37.52 3.35
7054 8529 7.171167 CACAAAACAACATAATTTGCCATCTCA 59.829 33.333 0.00 0.00 37.52 3.27
7055 8530 7.360269 CCACAAAACAACATAATTTGCCATCTC 60.360 37.037 0.00 0.00 37.52 2.75
7056 8531 6.427547 CCACAAAACAACATAATTTGCCATCT 59.572 34.615 0.00 0.00 37.52 2.90
7057 8532 6.426328 TCCACAAAACAACATAATTTGCCATC 59.574 34.615 0.00 0.00 37.52 3.51
7058 8533 6.294473 TCCACAAAACAACATAATTTGCCAT 58.706 32.000 0.00 0.00 37.52 4.40
7059 8534 5.674525 TCCACAAAACAACATAATTTGCCA 58.325 33.333 0.00 0.00 37.52 4.92
7060 8535 6.348376 CCATCCACAAAACAACATAATTTGCC 60.348 38.462 0.00 0.00 37.52 4.52
7061 8536 6.601264 CCATCCACAAAACAACATAATTTGC 58.399 36.000 0.00 0.00 37.52 3.68
7062 8537 6.204301 TGCCATCCACAAAACAACATAATTTG 59.796 34.615 0.00 0.00 39.38 2.32
7063 8538 6.294473 TGCCATCCACAAAACAACATAATTT 58.706 32.000 0.00 0.00 0.00 1.82
7064 8539 5.862845 TGCCATCCACAAAACAACATAATT 58.137 33.333 0.00 0.00 0.00 1.40
7065 8540 5.480642 TGCCATCCACAAAACAACATAAT 57.519 34.783 0.00 0.00 0.00 1.28
7066 8541 4.944619 TGCCATCCACAAAACAACATAA 57.055 36.364 0.00 0.00 0.00 1.90
7076 8551 4.754114 GCTTTACAAAATTGCCATCCACAA 59.246 37.500 0.00 0.00 0.00 3.33
7093 8568 2.273557 CATTGCCCATGCTTGCTTTAC 58.726 47.619 0.00 0.00 38.71 2.01
7110 8585 5.561339 GCAAGCAATGTTTTAAGCAAGCATT 60.561 36.000 10.78 0.00 44.67 3.56
7111 8586 4.083696 GCAAGCAATGTTTTAAGCAAGCAT 60.084 37.500 10.78 0.00 37.90 3.79
7112 8587 3.248125 GCAAGCAATGTTTTAAGCAAGCA 59.752 39.130 10.78 0.00 0.00 3.91
7113 8588 3.495753 AGCAAGCAATGTTTTAAGCAAGC 59.504 39.130 0.00 2.49 0.00 4.01
7114 8589 5.662211 AAGCAAGCAATGTTTTAAGCAAG 57.338 34.783 0.00 0.00 0.00 4.01
7115 8590 5.583854 TCAAAGCAAGCAATGTTTTAAGCAA 59.416 32.000 4.49 0.00 40.04 3.91
7116 8591 5.114780 TCAAAGCAAGCAATGTTTTAAGCA 58.885 33.333 4.49 0.00 40.04 3.91
7117 8592 5.655893 TCAAAGCAAGCAATGTTTTAAGC 57.344 34.783 4.49 0.00 40.04 3.09
7118 8593 9.505995 AATTTTCAAAGCAAGCAATGTTTTAAG 57.494 25.926 4.49 0.00 40.04 1.85
7119 8594 9.852091 AAATTTTCAAAGCAAGCAATGTTTTAA 57.148 22.222 4.49 0.00 40.04 1.52
7120 8595 9.286946 CAAATTTTCAAAGCAAGCAATGTTTTA 57.713 25.926 4.49 0.00 40.04 1.52
7121 8596 7.813627 ACAAATTTTCAAAGCAAGCAATGTTTT 59.186 25.926 0.00 0.00 42.39 2.43
7122 8597 7.314393 ACAAATTTTCAAAGCAAGCAATGTTT 58.686 26.923 0.00 0.00 33.41 2.83
7123 8598 6.854778 ACAAATTTTCAAAGCAAGCAATGTT 58.145 28.000 0.00 0.00 0.00 2.71
7124 8599 6.093771 TGACAAATTTTCAAAGCAAGCAATGT 59.906 30.769 0.00 0.00 0.00 2.71
7127 8602 6.509837 CGATGACAAATTTTCAAAGCAAGCAA 60.510 34.615 7.01 0.00 0.00 3.91
7138 8613 5.827568 ATGTTGTGCGATGACAAATTTTC 57.172 34.783 0.00 0.00 37.58 2.29
7143 8618 5.008118 TCAAGTTATGTTGTGCGATGACAAA 59.992 36.000 0.00 0.00 37.58 2.83
7264 8741 3.239026 CGATACGGCGTAAACTACTTGTG 59.761 47.826 24.81 3.47 0.00 3.33
7267 8744 3.126858 TGACGATACGGCGTAAACTACTT 59.873 43.478 24.81 5.19 45.72 2.24
7278 8755 1.226603 AAGCTCGTGACGATACGGC 60.227 57.895 8.60 8.61 43.85 5.68
7286 8763 1.532868 ACAGCAAATCAAGCTCGTGAC 59.467 47.619 0.00 0.00 41.14 3.67
7337 8814 5.959618 AGCAACTCTAAACAATTACCCAC 57.040 39.130 0.00 0.00 0.00 4.61
7363 8840 3.726607 CTCCATCCAAATCTCCGAAGAG 58.273 50.000 0.00 0.00 41.93 2.85
7364 8841 2.158900 GCTCCATCCAAATCTCCGAAGA 60.159 50.000 0.00 0.00 35.54 2.87
7365 8842 2.216898 GCTCCATCCAAATCTCCGAAG 58.783 52.381 0.00 0.00 0.00 3.79
7366 8843 1.473257 CGCTCCATCCAAATCTCCGAA 60.473 52.381 0.00 0.00 0.00 4.30
7367 8844 0.104855 CGCTCCATCCAAATCTCCGA 59.895 55.000 0.00 0.00 0.00 4.55
7368 8845 0.104855 TCGCTCCATCCAAATCTCCG 59.895 55.000 0.00 0.00 0.00 4.63
7369 8846 2.332063 TTCGCTCCATCCAAATCTCC 57.668 50.000 0.00 0.00 0.00 3.71
7370 8847 2.030946 CGTTTCGCTCCATCCAAATCTC 59.969 50.000 0.00 0.00 0.00 2.75
7371 8848 2.009774 CGTTTCGCTCCATCCAAATCT 58.990 47.619 0.00 0.00 0.00 2.40
7372 8849 2.458592 CGTTTCGCTCCATCCAAATC 57.541 50.000 0.00 0.00 0.00 2.17
7384 8861 0.937699 GGAAAACCCAAGCGTTTCGC 60.938 55.000 6.00 6.00 43.69 4.70
7385 8862 0.659123 CGGAAAACCCAAGCGTTTCG 60.659 55.000 0.00 0.00 34.89 3.46
7386 8863 0.382873 ACGGAAAACCCAAGCGTTTC 59.617 50.000 0.00 0.00 34.89 2.78
7387 8864 1.677942 TACGGAAAACCCAAGCGTTT 58.322 45.000 0.00 0.00 37.56 3.60
7388 8865 1.677942 TTACGGAAAACCCAAGCGTT 58.322 45.000 0.00 0.00 34.14 4.84
7389 8866 1.900245 ATTACGGAAAACCCAAGCGT 58.100 45.000 0.00 0.00 34.14 5.07
7390 8867 2.096335 GGTATTACGGAAAACCCAAGCG 59.904 50.000 0.00 0.00 34.14 4.68
7391 8868 2.096335 CGGTATTACGGAAAACCCAAGC 59.904 50.000 0.00 0.00 34.14 4.01
7392 8869 2.096335 GCGGTATTACGGAAAACCCAAG 59.904 50.000 5.64 0.00 34.14 3.61
7393 8870 2.083002 GCGGTATTACGGAAAACCCAA 58.917 47.619 5.64 0.00 34.14 4.12
7394 8871 1.736612 GCGGTATTACGGAAAACCCA 58.263 50.000 5.64 0.00 34.14 4.51
7395 8872 0.652071 CGCGGTATTACGGAAAACCC 59.348 55.000 0.00 0.00 0.00 4.11
7403 8880 1.299620 CCAGGACCGCGGTATTACG 60.300 63.158 34.36 17.62 0.00 3.18
7404 8881 1.000938 CTACCAGGACCGCGGTATTAC 60.001 57.143 34.36 21.32 37.15 1.89
7405 8882 1.321474 CTACCAGGACCGCGGTATTA 58.679 55.000 34.36 16.20 37.15 0.98
7406 8883 1.397390 CCTACCAGGACCGCGGTATT 61.397 60.000 34.36 20.02 37.67 1.89
7407 8884 1.831286 CCTACCAGGACCGCGGTAT 60.831 63.158 34.36 20.99 37.67 2.73
7408 8885 2.440796 CCTACCAGGACCGCGGTA 60.441 66.667 34.36 14.16 37.67 4.02
7409 8886 4.371417 TCCTACCAGGACCGCGGT 62.371 66.667 34.89 34.89 40.06 5.68
7410 8887 3.528370 CTCCTACCAGGACCGCGG 61.528 72.222 26.86 26.86 40.06 6.46
7411 8888 2.754658 ACTCCTACCAGGACCGCG 60.755 66.667 0.00 0.00 40.06 6.46
7412 8889 1.542187 AACACTCCTACCAGGACCGC 61.542 60.000 0.00 0.00 40.06 5.68
7413 8890 1.749634 CTAACACTCCTACCAGGACCG 59.250 57.143 0.00 0.00 40.06 4.79
7414 8891 2.759535 GACTAACACTCCTACCAGGACC 59.240 54.545 0.00 0.00 40.06 4.46
7415 8892 2.422832 CGACTAACACTCCTACCAGGAC 59.577 54.545 0.00 0.00 40.06 3.85
7416 8893 2.040813 ACGACTAACACTCCTACCAGGA 59.959 50.000 0.00 0.00 43.43 3.86
7417 8894 2.422832 GACGACTAACACTCCTACCAGG 59.577 54.545 0.00 0.00 36.46 4.45
7418 8895 3.079578 TGACGACTAACACTCCTACCAG 58.920 50.000 0.00 0.00 0.00 4.00
7419 8896 3.144657 TGACGACTAACACTCCTACCA 57.855 47.619 0.00 0.00 0.00 3.25
7420 8897 3.755378 TCTTGACGACTAACACTCCTACC 59.245 47.826 0.00 0.00 0.00 3.18
7421 8898 5.564048 ATCTTGACGACTAACACTCCTAC 57.436 43.478 0.00 0.00 0.00 3.18
7422 8899 7.692460 TTAATCTTGACGACTAACACTCCTA 57.308 36.000 0.00 0.00 0.00 2.94
7423 8900 6.585695 TTAATCTTGACGACTAACACTCCT 57.414 37.500 0.00 0.00 0.00 3.69
7424 8901 7.088905 TCTTTAATCTTGACGACTAACACTCC 58.911 38.462 0.00 0.00 0.00 3.85
7425 8902 8.587950 CATCTTTAATCTTGACGACTAACACTC 58.412 37.037 0.00 0.00 0.00 3.51
7426 8903 8.304596 TCATCTTTAATCTTGACGACTAACACT 58.695 33.333 0.00 0.00 0.00 3.55
7427 8904 8.462143 TCATCTTTAATCTTGACGACTAACAC 57.538 34.615 0.00 0.00 0.00 3.32
7428 8905 9.653287 ATTCATCTTTAATCTTGACGACTAACA 57.347 29.630 0.00 0.00 0.00 2.41
7429 8906 9.907576 CATTCATCTTTAATCTTGACGACTAAC 57.092 33.333 0.00 0.00 0.00 2.34
7430 8907 8.604035 GCATTCATCTTTAATCTTGACGACTAA 58.396 33.333 0.00 0.00 0.00 2.24
7431 8908 7.981789 AGCATTCATCTTTAATCTTGACGACTA 59.018 33.333 0.00 0.00 0.00 2.59
7432 8909 6.820656 AGCATTCATCTTTAATCTTGACGACT 59.179 34.615 0.00 0.00 0.00 4.18
7433 8910 7.009568 AGCATTCATCTTTAATCTTGACGAC 57.990 36.000 0.00 0.00 0.00 4.34
7434 8911 6.019559 CGAGCATTCATCTTTAATCTTGACGA 60.020 38.462 0.00 0.00 0.00 4.20
7435 8912 6.125419 CGAGCATTCATCTTTAATCTTGACG 58.875 40.000 0.00 0.00 0.00 4.35
7436 8913 5.906285 GCGAGCATTCATCTTTAATCTTGAC 59.094 40.000 0.00 0.00 0.00 3.18
7437 8914 5.819379 AGCGAGCATTCATCTTTAATCTTGA 59.181 36.000 0.00 0.00 0.00 3.02
7438 8915 6.057627 AGCGAGCATTCATCTTTAATCTTG 57.942 37.500 0.00 0.00 0.00 3.02
7439 8916 6.690194 AAGCGAGCATTCATCTTTAATCTT 57.310 33.333 0.00 0.00 0.00 2.40
7440 8917 6.317140 TCAAAGCGAGCATTCATCTTTAATCT 59.683 34.615 0.00 0.00 29.87 2.40
7441 8918 6.489675 TCAAAGCGAGCATTCATCTTTAATC 58.510 36.000 0.00 0.00 29.87 1.75
7442 8919 6.441093 TCAAAGCGAGCATTCATCTTTAAT 57.559 33.333 0.00 0.00 29.87 1.40
7443 8920 5.878332 TCAAAGCGAGCATTCATCTTTAA 57.122 34.783 0.00 0.00 29.87 1.52
7444 8921 5.674569 GCTTCAAAGCGAGCATTCATCTTTA 60.675 40.000 0.00 0.00 42.88 1.85
7445 8922 4.730657 CTTCAAAGCGAGCATTCATCTTT 58.269 39.130 0.00 0.00 0.00 2.52
7446 8923 3.427233 GCTTCAAAGCGAGCATTCATCTT 60.427 43.478 0.00 0.00 42.88 2.40
7447 8924 2.097142 GCTTCAAAGCGAGCATTCATCT 59.903 45.455 0.00 0.00 42.88 2.90
7448 8925 2.448219 GCTTCAAAGCGAGCATTCATC 58.552 47.619 0.00 0.00 42.88 2.92
7449 8926 2.556534 GCTTCAAAGCGAGCATTCAT 57.443 45.000 0.00 0.00 42.88 2.57
7472 8949 3.481024 CAAATGCTTTGCGCCCGC 61.481 61.111 4.18 5.60 42.35 6.13
7473 8950 2.049248 ACAAATGCTTTGCGCCCG 60.049 55.556 4.18 0.00 44.39 6.13
7474 8951 0.038709 TACACAAATGCTTTGCGCCC 60.039 50.000 4.18 0.00 44.39 6.13
7475 8952 1.777101 TTACACAAATGCTTTGCGCC 58.223 45.000 4.18 0.00 44.39 6.53
7476 8953 5.701029 AATATTACACAAATGCTTTGCGC 57.299 34.783 0.00 0.00 44.39 6.09
7477 8954 7.167968 AGCATAATATTACACAAATGCTTTGCG 59.832 33.333 13.10 2.96 45.70 4.85
7478 8955 8.270799 CAGCATAATATTACACAAATGCTTTGC 58.729 33.333 15.34 8.97 45.70 3.68
7479 8956 8.270799 GCAGCATAATATTACACAAATGCTTTG 58.729 33.333 15.34 9.59 45.70 2.77
7480 8957 7.167968 CGCAGCATAATATTACACAAATGCTTT 59.832 33.333 15.34 0.00 45.70 3.51
7481 8958 6.638063 CGCAGCATAATATTACACAAATGCTT 59.362 34.615 15.34 3.02 45.70 3.91
7483 8960 6.142139 TCGCAGCATAATATTACACAAATGC 58.858 36.000 9.61 9.61 39.93 3.56
7484 8961 7.575365 TCTCGCAGCATAATATTACACAAATG 58.425 34.615 0.00 0.00 0.00 2.32
7485 8962 7.728847 TCTCGCAGCATAATATTACACAAAT 57.271 32.000 0.00 0.00 0.00 2.32
7486 8963 7.177498 CTCTCGCAGCATAATATTACACAAA 57.823 36.000 0.00 0.00 0.00 2.83
7487 8964 6.769608 CTCTCGCAGCATAATATTACACAA 57.230 37.500 0.00 0.00 0.00 3.33
7503 8980 4.383861 CAGGCCACTGCTCTCGCA 62.384 66.667 5.01 0.00 45.60 5.10
7529 9006 4.082125 AGTTTAGAGTTGATGGCCAAAGG 58.918 43.478 10.96 0.00 36.36 3.11
7530 9007 4.156739 GGAGTTTAGAGTTGATGGCCAAAG 59.843 45.833 10.96 0.00 36.36 2.77
7531 9008 4.079253 GGAGTTTAGAGTTGATGGCCAAA 58.921 43.478 10.96 0.00 36.36 3.28
7532 9009 3.330701 AGGAGTTTAGAGTTGATGGCCAA 59.669 43.478 10.96 0.00 0.00 4.52
7533 9010 2.912956 AGGAGTTTAGAGTTGATGGCCA 59.087 45.455 8.56 8.56 0.00 5.36
7534 9011 3.198853 AGAGGAGTTTAGAGTTGATGGCC 59.801 47.826 0.00 0.00 0.00 5.36
7535 9012 4.161377 AGAGAGGAGTTTAGAGTTGATGGC 59.839 45.833 0.00 0.00 0.00 4.40
7536 9013 5.930837 AGAGAGGAGTTTAGAGTTGATGG 57.069 43.478 0.00 0.00 0.00 3.51
7537 9014 9.528018 GAATAAGAGAGGAGTTTAGAGTTGATG 57.472 37.037 0.00 0.00 0.00 3.07
7538 9015 9.261035 TGAATAAGAGAGGAGTTTAGAGTTGAT 57.739 33.333 0.00 0.00 0.00 2.57
7539 9016 8.651589 TGAATAAGAGAGGAGTTTAGAGTTGA 57.348 34.615 0.00 0.00 0.00 3.18
7540 9017 9.883142 ATTGAATAAGAGAGGAGTTTAGAGTTG 57.117 33.333 0.00 0.00 0.00 3.16
7549 9026 8.907885 GCCATTTTTATTGAATAAGAGAGGAGT 58.092 33.333 10.40 0.00 0.00 3.85
7550 9027 8.906867 TGCCATTTTTATTGAATAAGAGAGGAG 58.093 33.333 10.40 0.00 0.00 3.69
7551 9028 8.821686 TGCCATTTTTATTGAATAAGAGAGGA 57.178 30.769 10.40 0.00 0.00 3.71
7552 9029 9.874205 TTTGCCATTTTTATTGAATAAGAGAGG 57.126 29.630 0.00 1.91 0.00 3.69
7560 9037 9.628746 GCAAAAGATTTGCCATTTTTATTGAAT 57.371 25.926 15.12 0.00 39.38 2.57
7574 9051 5.898630 TTAAAACGAGGCAAAAGATTTGC 57.101 34.783 17.18 17.18 44.22 3.68
7598 9075 3.714280 AGGGGTTTGGTGCACTAATTTTT 59.286 39.130 16.93 0.00 0.00 1.94
7608 9085 1.202639 CCAGAAAAAGGGGTTTGGTGC 60.203 52.381 0.00 0.00 0.00 5.01
7618 9095 5.699839 CCATTTAGTCGTTCCAGAAAAAGG 58.300 41.667 0.00 0.00 0.00 3.11
7625 9102 3.063997 GTGATGCCATTTAGTCGTTCCAG 59.936 47.826 0.00 0.00 0.00 3.86
7631 9109 2.609459 GGACTGTGATGCCATTTAGTCG 59.391 50.000 9.37 0.00 34.41 4.18
7704 9182 0.333993 AGAACAGTAGGGGCGTAGGA 59.666 55.000 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.