AutoCloner

Multiple sequence alignment - TraesCS2D01G276800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G276800	chr2D	100.000	2581	0	0	1	2581	346435650	346438230	0.000000e+00	4767
1	TraesCS2D01G276800	chr2D	92.265	2172	130	15	430	2581	7031493	7033646	0.000000e+00	3046
2	TraesCS2D01G276800	chr2D	91.880	2192	122	30	430	2581	644015511	644013336	0.000000e+00	3011
3	TraesCS2D01G276800	chr2D	92.208	77	6	0	3	79	53679738	53679814	2.720000e-20	110
4	TraesCS2D01G276800	chr2B	94.624	2511	108	12	88	2581	412290531	412293031	0.000000e+00	3864
5	TraesCS2D01G276800	chr1D	93.007	2188	113	18	429	2581	250223366	250225548	0.000000e+00	3157
6	TraesCS2D01G276800	chr1D	93.127	2168	112	21	430	2581	424634906	424637052	0.000000e+00	3144
7	TraesCS2D01G276800	chr1D	91.566	83	5	2	3	84	4609765	4609846	2.100000e-21	113
8	TraesCS2D01G276800	chr1D	90.361	83	8	0	3	85	333277222	333277140	2.720000e-20	110
9	TraesCS2D01G276800	chr7B	92.474	2179	138	15	423	2581	619668170	619670342	0.000000e+00	3092
10	TraesCS2D01G276800	chr4D	92.252	2194	122	20	430	2581	84467726	84465539	0.000000e+00	3066
11	TraesCS2D01G276800	chr7D	92.265	2172	138	19	426	2578	207197764	207199924	0.000000e+00	3053
12	TraesCS2D01G276800	chr7D	92.073	2195	127	22	426	2581	175933386	175931200	0.000000e+00	3046
13	TraesCS2D01G276800	chr7D	93.506	77	5	0	3	79	468823157	468823233	5.840000e-22	115
14	TraesCS2D01G276800	chr7D	91.566	83	6	1	3	85	530042658	530042577	2.100000e-21	113
15	TraesCS2D01G276800	chr5A	92.046	2175	134	19	430	2580	536362165	536364324	0.000000e+00	3022
16	TraesCS2D01G276800	chr6D	91.063	2182	156	26	426	2581	944572	942404	0.000000e+00	2913
17	TraesCS2D01G276800	chr6D	93.023	86	2	2	3	88	51341979	51342060	3.490000e-24	122
18	TraesCS2D01G276800	chr6D	92.683	82	4	2	3	84	67400569	67400648	1.620000e-22	117
19	TraesCS2D01G276800	chr6D	94.444	72	4	0	3	74	103676821	103676892	7.550000e-21	111
20	TraesCS2D01G276800	chr3D	92.754	1946	101	18	671	2581	540374905	540376845	0.000000e+00	2776
21	TraesCS2D01G276800	chr3D	90.482	851	54	10	428	1256	515987200	515986355	0.000000e+00	1098
22	TraesCS2D01G276800	chr5D	90.902	1341	76	24	417	1726	59767212	59765887	0.000000e+00	1759
23	TraesCS2D01G276800	chr2A	96.203	158	5	1	88	245	460368769	460368925	9.160000e-65	257
24	TraesCS2D01G276800	chr2A	92.105	152	12	0	279	430	460368929	460369080	5.590000e-52	215
25	TraesCS2D01G276800	chr7A	93.590	78	4	1	3	79	336754463	336754540	5.840000e-22	115

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G276800	chr2D	346435650	346438230	2580	False	4767	4767	100.000	1	2581	1	chr2D.!!$F3	2580
1	TraesCS2D01G276800	chr2D	7031493	7033646	2153	False	3046	3046	92.265	430	2581	1	chr2D.!!$F1	2151
2	TraesCS2D01G276800	chr2D	644013336	644015511	2175	True	3011	3011	91.880	430	2581	1	chr2D.!!$R1	2151
3	TraesCS2D01G276800	chr2B	412290531	412293031	2500	False	3864	3864	94.624	88	2581	1	chr2B.!!$F1	2493
4	TraesCS2D01G276800	chr1D	250223366	250225548	2182	False	3157	3157	93.007	429	2581	1	chr1D.!!$F2	2152
5	TraesCS2D01G276800	chr1D	424634906	424637052	2146	False	3144	3144	93.127	430	2581	1	chr1D.!!$F3	2151
6	TraesCS2D01G276800	chr7B	619668170	619670342	2172	False	3092	3092	92.474	423	2581	1	chr7B.!!$F1	2158
7	TraesCS2D01G276800	chr4D	84465539	84467726	2187	True	3066	3066	92.252	430	2581	1	chr4D.!!$R1	2151
8	TraesCS2D01G276800	chr7D	207197764	207199924	2160	False	3053	3053	92.265	426	2578	1	chr7D.!!$F1	2152
9	TraesCS2D01G276800	chr7D	175931200	175933386	2186	True	3046	3046	92.073	426	2581	1	chr7D.!!$R1	2155
10	TraesCS2D01G276800	chr5A	536362165	536364324	2159	False	3022	3022	92.046	430	2580	1	chr5A.!!$F1	2150
11	TraesCS2D01G276800	chr6D	942404	944572	2168	True	2913	2913	91.063	426	2581	1	chr6D.!!$R1	2155
12	TraesCS2D01G276800	chr3D	540374905	540376845	1940	False	2776	2776	92.754	671	2581	1	chr3D.!!$F1	1910
13	TraesCS2D01G276800	chr3D	515986355	515987200	845	True	1098	1098	90.482	428	1256	1	chr3D.!!$R1	828
14	TraesCS2D01G276800	chr5D	59765887	59767212	1325	True	1759	1759	90.902	417	1726	1	chr5D.!!$R1	1309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
42	43	0.165944	CCGACAAAGTCAATCCGTGC	59.834	55.0	0.0	0.0	32.09	5.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1923	2018	0.036577	ACAGCTCATGTGCAGTCCTC	60.037	55.0	20.92	0.0	41.91	3.71	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	3.941194	GCGTATTGTGACGGTGAAC	57.059	52.632	0.00	0.00	43.13	3.18
23	24	0.441145	GCGTATTGTGACGGTGAACC	59.559	55.000	0.00	0.00	43.13	3.62
24	25	1.073177	CGTATTGTGACGGTGAACCC	58.927	55.000	0.00	0.00	39.19	4.11
34	35	3.390003	GGTGAACCCGACAAAGTCA	57.610	52.632	0.00	0.00	32.09	3.41
35	36	1.670791	GGTGAACCCGACAAAGTCAA	58.329	50.000	0.00	0.00	32.09	3.18
36	37	2.227194	GGTGAACCCGACAAAGTCAAT	58.773	47.619	0.00	0.00	32.09	2.57
37	38	2.225727	GGTGAACCCGACAAAGTCAATC	59.774	50.000	0.00	0.00	32.09	2.67
38	39	2.225727	GTGAACCCGACAAAGTCAATCC	59.774	50.000	0.00	0.00	32.09	3.01
39	40	1.463444	GAACCCGACAAAGTCAATCCG	59.537	52.381	0.00	0.00	32.09	4.18
40	41	0.395312	ACCCGACAAAGTCAATCCGT	59.605	50.000	0.00	0.00	32.09	4.69
41	42	0.796312	CCCGACAAAGTCAATCCGTG	59.204	55.000	0.00	0.00	32.09	4.94
42	43	0.165944	CCGACAAAGTCAATCCGTGC	59.834	55.000	0.00	0.00	32.09	5.34
43	44	1.148310	CGACAAAGTCAATCCGTGCT	58.852	50.000	0.00	0.00	32.09	4.40
44	45	1.531149	CGACAAAGTCAATCCGTGCTT	59.469	47.619	0.00	0.00	32.09	3.91
45	46	2.032030	CGACAAAGTCAATCCGTGCTTT	60.032	45.455	0.00	0.00	35.37	3.51
46	47	3.185594	CGACAAAGTCAATCCGTGCTTTA	59.814	43.478	0.00	0.00	34.13	1.85
47	48	4.142902	CGACAAAGTCAATCCGTGCTTTAT	60.143	41.667	0.00	0.00	34.13	1.40
48	49	5.616866	CGACAAAGTCAATCCGTGCTTTATT	60.617	40.000	0.00	0.00	34.13	1.40
49	50	6.401688	CGACAAAGTCAATCCGTGCTTTATTA	60.402	38.462	0.00	0.00	34.13	0.98
50	51	7.391148	ACAAAGTCAATCCGTGCTTTATTAT	57.609	32.000	0.00	0.00	34.13	1.28
51	52	7.826690	ACAAAGTCAATCCGTGCTTTATTATT	58.173	30.769	0.00	0.00	34.13	1.40
52	53	8.952278	ACAAAGTCAATCCGTGCTTTATTATTA	58.048	29.630	0.00	0.00	34.13	0.98
53	54	9.438291	CAAAGTCAATCCGTGCTTTATTATTAG	57.562	33.333	0.00	0.00	34.13	1.73
54	55	7.730364	AGTCAATCCGTGCTTTATTATTAGG	57.270	36.000	0.00	0.00	0.00	2.69
55	56	6.710744	AGTCAATCCGTGCTTTATTATTAGGG	59.289	38.462	0.00	0.00	0.00	3.53
56	57	6.708949	GTCAATCCGTGCTTTATTATTAGGGA	59.291	38.462	0.00	0.00	0.00	4.20
57	58	6.934645	TCAATCCGTGCTTTATTATTAGGGAG	59.065	38.462	0.00	0.00	0.00	4.30
58	59	4.638304	TCCGTGCTTTATTATTAGGGAGC	58.362	43.478	0.00	0.00	0.00	4.70
59	60	3.432252	CCGTGCTTTATTATTAGGGAGCG	59.568	47.826	0.00	0.00	33.03	5.03
60	61	4.304110	CGTGCTTTATTATTAGGGAGCGA	58.696	43.478	0.00	0.00	33.03	4.93
61	62	4.929808	CGTGCTTTATTATTAGGGAGCGAT	59.070	41.667	0.00	0.00	33.03	4.58
62	63	6.097356	CGTGCTTTATTATTAGGGAGCGATA	58.903	40.000	0.00	0.00	33.03	2.92
63	64	6.253727	CGTGCTTTATTATTAGGGAGCGATAG	59.746	42.308	0.00	0.00	33.03	2.08
64	65	7.321153	GTGCTTTATTATTAGGGAGCGATAGA	58.679	38.462	0.00	0.00	39.76	1.98
65	66	7.982354	GTGCTTTATTATTAGGGAGCGATAGAT	59.018	37.037	0.00	0.00	39.76	1.98
66	67	9.197306	TGCTTTATTATTAGGGAGCGATAGATA	57.803	33.333	0.00	0.00	39.76	1.98
113	114	1.079750	GAGAGCTGAACCACCGGAC	60.080	63.158	9.46	0.00	0.00	4.79
123	124	4.082523	CACCGGACCCATCAGCGT	62.083	66.667	9.46	0.00	0.00	5.07
266	267	0.804933	GGCGTTTAGGTACCTCTGCG	60.805	60.000	20.32	20.52	0.00	5.18
309	310	9.864034	CGATGAGTGATATTACATAAACCAAAC	57.136	33.333	0.00	0.00	0.00	2.93
432	433	5.694995	AGAACAGAAAATTGAGACTTGGGA	58.305	37.500	0.00	0.00	0.00	4.37
452	453	1.068921	GTGTTTGGTTGCCCGCATT	59.931	52.632	0.00	0.00	0.00	3.56
517	518	1.067295	TCTGGATTCACTGTTGGGCT	58.933	50.000	0.00	0.00	0.00	5.19
702	704	1.475930	GGAGCCAAATCTAGCCTCACC	60.476	57.143	0.00	0.00	0.00	4.02
929	994	2.271777	CCTCCCCCACTTTGTTAGGTA	58.728	52.381	0.00	0.00	0.00	3.08
971	1041	4.503714	AGGTGTAACATCGATTTCCCAT	57.496	40.909	0.00	0.00	39.98	4.00
985	1055	0.320946	TCCCATTGAACGAACCGTCC	60.321	55.000	0.00	0.00	39.99	4.79
1110	1180	3.411446	TCGTCGTGTTAGGAGACCTTTA	58.589	45.455	0.00	0.00	34.61	1.85
1355	1440	1.351017	GAGGTTCAGGGTCATTCCACA	59.649	52.381	0.00	0.00	38.11	4.17
1398	1483	4.367450	CATCTCTAGGTACTTCAAGCAGC	58.633	47.826	0.00	0.00	41.75	5.25
1425	1511	1.064003	TGCTGTTGGGGAGCTTAGAA	58.936	50.000	0.00	0.00	37.35	2.10
1466	1552	2.067932	CTGGCCTGACTCCACCCAAA	62.068	60.000	3.32	0.00	0.00	3.28
1663	1755	4.026744	AGGTCACAGTCTACAGCATACAT	58.973	43.478	0.00	0.00	0.00	2.29
1664	1756	4.115516	GGTCACAGTCTACAGCATACATG	58.884	47.826	0.00	0.00	0.00	3.21
1677	1772	2.569059	CATACATGGGAGGAAGCACTG	58.431	52.381	0.00	0.00	0.00	3.66
1693	1788	2.153645	CACTGCACAAGCCAGAATGTA	58.846	47.619	0.00	0.00	41.13	2.29
1736	1831	4.898320	TCTGAAGTTCACATATGTGCTGT	58.102	39.130	27.71	14.23	45.25	4.40
1834	1929	3.262420	CGATGACAAGTTCTACCTTGGG	58.738	50.000	5.96	0.00	44.89	4.12
1923	2018	4.024725	CGAGTTCTCTGGTAGGAACTATCG	60.025	50.000	8.09	5.92	46.97	2.92
1947	2043	3.253188	GGACTGCACATGAGCTGTTTAAA	59.747	43.478	23.99	0.00	45.03	1.52
2001	2097	1.076024	AGGGCATTTGGAGCTCTGAAA	59.924	47.619	14.64	13.09	42.30	2.69
2052	2149	2.335681	TCCACCCATACTCCACTCAA	57.664	50.000	0.00	0.00	0.00	3.02
2145	2242	1.682684	GGAGGAAGAGGTCGAGCCA	60.683	63.158	11.73	0.00	40.61	4.75
2332	2460	6.652053	AGAGGAAGATGAAGAGGAAGATTTG	58.348	40.000	0.00	0.00	0.00	2.32
2338	2466	5.728741	AGATGAAGAGGAAGATTTGGGTAGT	59.271	40.000	0.00	0.00	0.00	2.73
2530	2658	2.626840	GTTGCAACCAAACACCATGTT	58.373	42.857	19.15	0.00	43.41	2.71

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	1.670791	TTGACTTTGTCGGGTTCACC	58.329	50.000	0.00	0.00	34.95	4.02
17	18	2.225727	GGATTGACTTTGTCGGGTTCAC	59.774	50.000	0.00	0.00	34.95	3.18
18	19	2.500229	GGATTGACTTTGTCGGGTTCA	58.500	47.619	0.00	0.00	34.95	3.18
19	20	1.463444	CGGATTGACTTTGTCGGGTTC	59.537	52.381	0.00	0.00	34.95	3.62
20	21	1.202722	ACGGATTGACTTTGTCGGGTT	60.203	47.619	0.00	0.00	34.95	4.11
21	22	0.395312	ACGGATTGACTTTGTCGGGT	59.605	50.000	0.00	0.00	34.95	5.28
22	23	0.796312	CACGGATTGACTTTGTCGGG	59.204	55.000	0.00	0.00	34.95	5.14
23	24	0.165944	GCACGGATTGACTTTGTCGG	59.834	55.000	0.00	0.00	34.95	4.79
24	25	1.148310	AGCACGGATTGACTTTGTCG	58.852	50.000	0.00	0.00	34.95	4.35
25	26	3.626028	AAAGCACGGATTGACTTTGTC	57.374	42.857	0.00	0.00	33.18	3.18
26	27	5.705609	AATAAAGCACGGATTGACTTTGT	57.294	34.783	0.00	0.00	34.97	2.83
27	28	9.438291	CTAATAATAAAGCACGGATTGACTTTG	57.562	33.333	0.00	0.00	34.97	2.77
28	29	8.621286	CCTAATAATAAAGCACGGATTGACTTT	58.379	33.333	0.00	0.00	36.31	2.66
29	30	7.228706	CCCTAATAATAAAGCACGGATTGACTT	59.771	37.037	0.00	0.00	0.00	3.01
30	31	6.710744	CCCTAATAATAAAGCACGGATTGACT	59.289	38.462	0.00	0.00	0.00	3.41
31	32	6.708949	TCCCTAATAATAAAGCACGGATTGAC	59.291	38.462	0.00	0.00	0.00	3.18
32	33	6.833041	TCCCTAATAATAAAGCACGGATTGA	58.167	36.000	0.00	0.00	0.00	2.57
33	34	6.348540	GCTCCCTAATAATAAAGCACGGATTG	60.349	42.308	0.00	0.00	0.00	2.67
34	35	5.705905	GCTCCCTAATAATAAAGCACGGATT	59.294	40.000	0.00	0.00	0.00	3.01
35	36	5.246307	GCTCCCTAATAATAAAGCACGGAT	58.754	41.667	0.00	0.00	0.00	4.18
36	37	4.638304	GCTCCCTAATAATAAAGCACGGA	58.362	43.478	0.00	0.00	0.00	4.69
37	38	3.432252	CGCTCCCTAATAATAAAGCACGG	59.568	47.826	0.00	0.00	0.00	4.94
38	39	4.304110	TCGCTCCCTAATAATAAAGCACG	58.696	43.478	0.00	0.00	0.00	5.34
39	40	7.321153	TCTATCGCTCCCTAATAATAAAGCAC	58.679	38.462	0.00	0.00	0.00	4.40
40	41	7.476540	TCTATCGCTCCCTAATAATAAAGCA	57.523	36.000	0.00	0.00	0.00	3.91
74	75	7.710475	GCTCTCTGCACTTCTTTATCTTTATCT	59.290	37.037	0.00	0.00	42.31	1.98
75	76	7.710475	AGCTCTCTGCACTTCTTTATCTTTATC	59.290	37.037	0.00	0.00	45.94	1.75
76	77	7.495279	CAGCTCTCTGCACTTCTTTATCTTTAT	59.505	37.037	0.00	0.00	45.94	1.40
77	78	6.815641	CAGCTCTCTGCACTTCTTTATCTTTA	59.184	38.462	0.00	0.00	45.94	1.85
78	79	5.642919	CAGCTCTCTGCACTTCTTTATCTTT	59.357	40.000	0.00	0.00	45.94	2.52
79	80	5.046735	TCAGCTCTCTGCACTTCTTTATCTT	60.047	40.000	0.00	0.00	45.94	2.40
80	81	4.465660	TCAGCTCTCTGCACTTCTTTATCT	59.534	41.667	0.00	0.00	45.94	1.98
81	82	4.753233	TCAGCTCTCTGCACTTCTTTATC	58.247	43.478	0.00	0.00	45.94	1.75
82	83	4.815533	TCAGCTCTCTGCACTTCTTTAT	57.184	40.909	0.00	0.00	45.94	1.40
83	84	4.310769	GTTCAGCTCTCTGCACTTCTTTA	58.689	43.478	0.00	0.00	45.94	1.85
84	85	3.137533	GTTCAGCTCTCTGCACTTCTTT	58.862	45.455	0.00	0.00	45.94	2.52
85	86	2.549778	GGTTCAGCTCTCTGCACTTCTT	60.550	50.000	0.00	0.00	45.94	2.52
86	87	1.001860	GGTTCAGCTCTCTGCACTTCT	59.998	52.381	0.00	0.00	45.94	2.85
113	114	1.021390	GGACACTGAACGCTGATGGG	61.021	60.000	0.00	0.00	0.00	4.00
151	152	2.126346	GCCAATGGCGTGCTTCAC	60.126	61.111	9.14	0.00	39.62	3.18
266	267	7.171848	TCACTCATCGAGTCTAGCTATAGAAAC	59.828	40.741	3.21	0.00	41.37	2.78
309	310	5.521735	ACGTACACCACTACTACTCGATTAG	59.478	44.000	8.17	8.17	0.00	1.73
420	421	2.285083	CAAACACGTCCCAAGTCTCAA	58.715	47.619	0.00	0.00	0.00	3.02
479	480	2.031870	GACAACCAAACAGGCCTCTTT	58.968	47.619	0.00	0.00	43.14	2.52
517	518	1.227342	TTGAGAAGCGTGCGATGCAA	61.227	50.000	0.00	0.00	41.47	4.08
702	704	0.175989	GTGAGCGAGTAGAAAGGGGG	59.824	60.000	0.00	0.00	0.00	5.40
799	834	0.106708	GAGCACCAGATCCGCCAATA	59.893	55.000	0.00	0.00	0.00	1.90
800	835	1.153086	GAGCACCAGATCCGCCAAT	60.153	57.895	0.00	0.00	0.00	3.16
801	836	2.268920	GAGCACCAGATCCGCCAA	59.731	61.111	0.00	0.00	0.00	4.52
957	1024	3.605634	TCGTTCAATGGGAAATCGATGT	58.394	40.909	0.00	0.00	37.23	3.06
985	1055	3.629058	CGTCCATAACCTAGTCGACATG	58.371	50.000	19.50	11.06	0.00	3.21
1110	1180	3.297134	AACATTGGACCATAGCGGATT	57.703	42.857	0.00	0.00	38.63	3.01
1355	1440	6.561838	AGATGGTCTCCATTGATCTCCTAAAT	59.438	38.462	2.71	0.00	45.26	1.40
1404	1489	1.423541	TCTAAGCTCCCCAACAGCAAA	59.576	47.619	0.00	0.00	39.56	3.68
1425	1511	3.969466	TGGTCTCCTGATCATCTCTCT	57.031	47.619	0.00	0.00	0.00	3.10
1466	1552	0.394352	ATCTTGGGCTTCCGCGAATT	60.394	50.000	8.23	0.00	36.88	2.17
1663	1755	1.993701	TTGTGCAGTGCTTCCTCCCA	61.994	55.000	17.60	0.00	0.00	4.37
1664	1756	1.228245	TTGTGCAGTGCTTCCTCCC	60.228	57.895	17.60	0.00	0.00	4.30
1677	1772	2.669391	GCAAGTACATTCTGGCTTGTGC	60.669	50.000	0.00	0.00	37.06	4.57
1693	1788	2.368439	TCAAAGTCAACAGCAGCAAGT	58.632	42.857	0.00	0.00	0.00	3.16
1736	1831	3.931631	CTGACCCCTCCCAGCCAGA	62.932	68.421	0.00	0.00	0.00	3.86
1816	1911	2.696775	TCCCCAAGGTAGAACTTGTCA	58.303	47.619	6.57	0.00	44.89	3.58
1923	2018	0.036577	ACAGCTCATGTGCAGTCCTC	60.037	55.000	20.92	0.00	41.91	3.71
1947	2043	2.175202	CTAAGGCTGGAGTGTCTGAGT	58.825	52.381	0.00	0.00	0.00	3.41
2020	2117	5.905331	AGTATGGGTGGAATGACTTCTGATA	59.095	40.000	0.00	0.00	0.00	2.15
2052	2149	6.094881	TGCAACAAGTAAGAACAAGCTTAACT	59.905	34.615	0.00	0.00	32.58	2.24
2145	2242	0.613260	TGGAGCTAACAACATCGCCT	59.387	50.000	0.00	0.00	0.00	5.52
2332	2460	1.479323	TCATCGGTGTTGCTACTACCC	59.521	52.381	11.85	4.12	0.00	3.69
2338	2466	3.181469	GGGATAGTTCATCGGTGTTGCTA	60.181	47.826	0.00	0.00	34.12	3.49

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.