AutoCloner

Multiple sequence alignment - TraesCS2D01G276500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G276500	chr2D	100.000	2525	0	0	1	2525	346088224	346090748	0.000000e+00	4663.0
1	TraesCS2D01G276500	chr2D	83.784	148	14	7	534	672	216325670	216325816	5.670000e-27	132.0
2	TraesCS2D01G276500	chr2A	88.677	1784	119	35	1	1756	459798874	459800602	0.000000e+00	2098.0
3	TraesCS2D01G276500	chr2A	82.468	154	17	7	533	677	549290275	549290427	2.640000e-25	126.0
4	TraesCS2D01G276500	chr2A	80.519	154	20	7	532	676	79316005	79316157	2.660000e-20	110.0
5	TraesCS2D01G276500	chr2B	87.693	1812	131	31	752	2525	412057725	412059482	0.000000e+00	2026.0
6	TraesCS2D01G276500	chr2B	90.836	742	32	10	1	742	412050915	412051620	0.000000e+00	961.0
7	TraesCS2D01G276500	chr5D	74.484	823	156	33	1636	2435	35966006	35965215	8.770000e-80	307.0
8	TraesCS2D01G276500	chr5D	86.466	133	15	3	2305	2435	507432372	507432241	2.620000e-30	143.0
9	TraesCS2D01G276500	chr7D	74.457	783	155	29	1643	2398	563891845	563891081	1.900000e-76	296.0
10	TraesCS2D01G276500	chr7D	83.333	156	16	7	530	676	575593982	575594136	4.380000e-28	135.0
11	TraesCS2D01G276500	chr7D	82.803	157	17	7	532	679	34373318	34373473	5.670000e-27	132.0
12	TraesCS2D01G276500	chrUn	73.333	780	162	30	1643	2396	31197294	31196535	1.940000e-61	246.0
13	TraesCS2D01G276500	chr6A	73.699	711	152	21	1643	2326	46785673	46786375	6.980000e-61	244.0
14	TraesCS2D01G276500	chr3A	73.975	561	112	24	1766	2312	458803338	458802798	1.980000e-46	196.0
15	TraesCS2D01G276500	chr3A	84.932	73	7	3	2331	2401	42373063	42373133	1.250000e-08	71.3
16	TraesCS2D01G276500	chr5A	74.661	442	88	15	1765	2185	365938642	365939080	9.280000e-40	174.0
17	TraesCS2D01G276500	chr4B	77.692	260	54	3	2142	2398	640493059	640493317	3.360000e-34	156.0
18	TraesCS2D01G276500	chr4B	81.707	164	19	8	532	686	146469216	146469377	2.640000e-25	126.0
19	TraesCS2D01G276500	chr1D	75.806	310	71	3	2218	2524	211499771	211499463	1.210000e-33	154.0
20	TraesCS2D01G276500	chr6D	76.842	285	50	8	2244	2524	381919205	381918933	2.020000e-31	147.0
21	TraesCS2D01G276500	chr6D	82.143	168	20	7	531	689	392273073	392273239	4.380000e-28	135.0
22	TraesCS2D01G276500	chr7B	73.529	374	93	4	1954	2324	498985638	498985268	1.220000e-28	137.0
23	TraesCS2D01G276500	chr4D	82.166	157	17	8	532	678	74079351	74079506	9.480000e-25	124.0
24	TraesCS2D01G276500	chr6B	74.661	221	38	14	2174	2392	525952412	525952208	5.790000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G276500	chr2D	346088224	346090748	2524	False	4663	4663	100.000	1	2525	1	chr2D.!!$F2	2524
1	TraesCS2D01G276500	chr2A	459798874	459800602	1728	False	2098	2098	88.677	1	1756	1	chr2A.!!$F2	1755
2	TraesCS2D01G276500	chr2B	412057725	412059482	1757	False	2026	2026	87.693	752	2525	1	chr2B.!!$F2	1773
3	TraesCS2D01G276500	chr2B	412050915	412051620	705	False	961	961	90.836	1	742	1	chr2B.!!$F1	741
4	TraesCS2D01G276500	chr5D	35965215	35966006	791	True	307	307	74.484	1636	2435	1	chr5D.!!$R1	799
5	TraesCS2D01G276500	chr7D	563891081	563891845	764	True	296	296	74.457	1643	2398	1	chr7D.!!$R1	755
6	TraesCS2D01G276500	chrUn	31196535	31197294	759	True	246	246	73.333	1643	2396	1	chrUn.!!$R1	753
7	TraesCS2D01G276500	chr6A	46785673	46786375	702	False	244	244	73.699	1643	2326	1	chr6A.!!$F1	683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
388	389	0.03759	ACCGGCCAATGTAGCTGAAA	59.962	50.0	0.0	0.0	39.03	2.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2102	2208	0.827089	CATGGCCACCACCTTGACAA	60.827	55.0	8.16	0.0	35.8	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
126	127	6.791887	AGAATAATCGATGCAACACCATAG	57.208	37.500	0.00	0.00	0.00	2.23
128	129	6.767902	AGAATAATCGATGCAACACCATAGTT	59.232	34.615	0.00	0.00	0.00	2.24
184	185	8.886719	CACTTGATTTGTCTATGTGTGTATGAT	58.113	33.333	0.00	0.00	0.00	2.45
285	286	5.007682	TGTGCTTATCTTCTTAAACCCCAC	58.992	41.667	0.00	0.00	0.00	4.61
330	331	4.207891	AGACGAGCAGAATAATGGTGTT	57.792	40.909	0.00	0.00	0.00	3.32
340	341	7.230510	AGCAGAATAATGGTGTTAACAAAGTCA	59.769	33.333	10.51	7.20	0.00	3.41
388	389	0.037590	ACCGGCCAATGTAGCTGAAA	59.962	50.000	0.00	0.00	39.03	2.69
420	421	1.361793	CAAGGCCCATTTCGCATTTG	58.638	50.000	0.00	0.00	0.00	2.32
422	423	1.265236	AGGCCCATTTCGCATTTGAA	58.735	45.000	0.00	0.00	0.00	2.69
460	461	2.560542	GTGGTATGGTCCAAACATTGCA	59.439	45.455	0.00	0.00	39.34	4.08
462	463	3.837146	TGGTATGGTCCAAACATTGCAAT	59.163	39.130	5.99	5.99	34.24	3.56
501	502	7.636259	TCATTCATTCGAAATTTCCAACAAC	57.364	32.000	12.54	0.00	34.01	3.32
539	540	7.348537	AGTTAAAGGCATCTCTAATACTCCCTT	59.651	37.037	0.00	0.00	33.15	3.95
617	618	9.071276	ACTGTATTTGTTCATTCATTTCAGTCT	57.929	29.630	0.00	0.00	0.00	3.24
672	673	4.448210	TCTTATATTTGTGAACGGAGGGC	58.552	43.478	0.00	0.00	0.00	5.19
705	706	9.202273	TGTAATTTACTTTGGTCATGAAAATGC	57.798	29.630	0.00	0.00	0.00	3.56
786	815	5.705609	ATCGTTGTAAGCCAAAAGATGTT	57.294	34.783	0.00	0.00	33.82	2.71
787	816	4.854399	TCGTTGTAAGCCAAAAGATGTTG	58.146	39.130	0.00	0.00	34.07	3.33
788	817	4.336993	TCGTTGTAAGCCAAAAGATGTTGT	59.663	37.500	0.00	0.00	34.07	3.32
789	818	5.527951	TCGTTGTAAGCCAAAAGATGTTGTA	59.472	36.000	0.00	0.00	34.07	2.41
790	819	5.623673	CGTTGTAAGCCAAAAGATGTTGTAC	59.376	40.000	0.00	0.00	34.07	2.90
791	820	5.699097	TGTAAGCCAAAAGATGTTGTACC	57.301	39.130	0.00	0.00	0.00	3.34
792	821	5.381757	TGTAAGCCAAAAGATGTTGTACCT	58.618	37.500	0.00	0.00	0.00	3.08
793	822	4.853924	AAGCCAAAAGATGTTGTACCTG	57.146	40.909	0.00	0.00	0.00	4.00
794	823	2.558359	AGCCAAAAGATGTTGTACCTGC	59.442	45.455	0.00	0.00	0.00	4.85
795	824	2.558359	GCCAAAAGATGTTGTACCTGCT	59.442	45.455	0.00	0.00	0.00	4.24
796	825	3.366374	GCCAAAAGATGTTGTACCTGCTC	60.366	47.826	0.00	0.00	0.00	4.26
797	826	3.120199	CCAAAAGATGTTGTACCTGCTCG	60.120	47.826	0.00	0.00	0.00	5.03
798	827	1.726853	AAGATGTTGTACCTGCTCGC	58.273	50.000	0.00	0.00	0.00	5.03
799	828	0.108138	AGATGTTGTACCTGCTCGCC	60.108	55.000	0.00	0.00	0.00	5.54
800	829	0.108138	GATGTTGTACCTGCTCGCCT	60.108	55.000	0.00	0.00	0.00	5.52
801	830	0.108138	ATGTTGTACCTGCTCGCCTC	60.108	55.000	0.00	0.00	0.00	4.70
802	831	1.185618	TGTTGTACCTGCTCGCCTCT	61.186	55.000	0.00	0.00	0.00	3.69
803	832	0.815734	GTTGTACCTGCTCGCCTCTA	59.184	55.000	0.00	0.00	0.00	2.43
804	833	1.103803	TTGTACCTGCTCGCCTCTAG	58.896	55.000	0.00	0.00	0.00	2.43
837	885	2.448453	AGACACTGTACTACCAGCTCC	58.552	52.381	0.00	0.00	35.83	4.70
875	923	1.782044	CAAAAATGGGCGGTCAGTTG	58.218	50.000	0.00	0.00	0.00	3.16
936	991	5.514500	AAGGGGAGTAAAGCAAAGACATA	57.486	39.130	0.00	0.00	0.00	2.29
1041	1107	4.558178	CAAAGCATTGCCATACACAAGAA	58.442	39.130	4.70	0.00	0.00	2.52
1254	1324	0.319900	CGTGGACCCTGAGTTCAGTG	60.320	60.000	8.23	0.00	42.27	3.66
1546	1618	2.858344	GGAACTTGTGACGTGATATCGG	59.142	50.000	0.00	0.00	34.94	4.18
1570	1642	3.947196	TGTTCTTGTTCACAGAAGCATGT	59.053	39.130	0.00	0.00	0.00	3.21
1572	1644	3.807553	TCTTGTTCACAGAAGCATGTCA	58.192	40.909	0.00	0.00	0.00	3.58
1574	1646	4.214758	TCTTGTTCACAGAAGCATGTCATG	59.785	41.667	8.56	8.56	0.00	3.07
1575	1647	3.742385	TGTTCACAGAAGCATGTCATGA	58.258	40.909	17.24	0.00	0.00	3.07
1576	1648	4.136051	TGTTCACAGAAGCATGTCATGAA	58.864	39.130	17.24	0.00	0.00	2.57
1577	1649	4.763279	TGTTCACAGAAGCATGTCATGAAT	59.237	37.500	17.24	3.78	31.49	2.57
1610	1682	1.737838	TTAGGCCATCTTCAACGCTG	58.262	50.000	5.01	0.00	0.00	5.18
1616	1688	1.609061	CCATCTTCAACGCTGACCTGT	60.609	52.381	0.00	0.00	0.00	4.00
1620	1692	3.128349	TCTTCAACGCTGACCTGTAAAC	58.872	45.455	0.00	0.00	0.00	2.01
1622	1694	0.511221	CAACGCTGACCTGTAAACCG	59.489	55.000	0.00	0.00	0.00	4.44
1623	1695	0.601841	AACGCTGACCTGTAAACCGG	60.602	55.000	0.00	0.00	0.00	5.28
1627	1699	1.541670	GCTGACCTGTAAACCGGACAA	60.542	52.381	9.46	0.00	0.00	3.18
1632	1704	1.153353	CTGTAAACCGGACAACGCAT	58.847	50.000	9.46	0.00	42.52	4.73
1672	1744	2.577059	GAGTCGGCCATCCAACGA	59.423	61.111	2.24	0.00	0.00	3.85
1761	1835	8.334016	TCATTAAAATTCCGACATAATTTGCG	57.666	30.769	0.00	0.00	36.81	4.85
1767	1842	8.522178	AAATTCCGACATAATTTGCGTAAAAA	57.478	26.923	1.94	0.00	35.69	1.94
1771	1846	5.859648	CCGACATAATTTGCGTAAAAAGGTT	59.140	36.000	1.94	0.00	0.00	3.50
1868	1970	3.192922	GCATAGCCGTCGCCGTTT	61.193	61.111	0.00	0.00	34.57	3.60
1869	1971	2.701006	CATAGCCGTCGCCGTTTG	59.299	61.111	0.00	0.00	34.57	2.93
1948	2053	4.452733	GGCGGCCGTCTGCTACTT	62.453	66.667	28.70	0.00	44.02	2.24
1962	2067	1.079127	TACTTGCGAAGGAGCTGCC	60.079	57.895	0.00	0.00	38.13	4.85
2061	2167	3.508840	GCCGACATTGGCGAAGGG	61.509	66.667	14.86	0.00	46.75	3.95
2102	2208	1.160137	GTCAATCTTGGCAAGCTCGT	58.840	50.000	22.31	5.50	31.86	4.18
2118	2224	2.551912	CGTTGTCAAGGTGGTGGCC	61.552	63.158	0.00	0.00	0.00	5.36
2120	2226	0.827507	GTTGTCAAGGTGGTGGCCAT	60.828	55.000	9.72	0.00	35.28	4.40
2156	2263	3.044059	GCTGTGGTGATGAAGCGGC	62.044	63.158	0.00	0.00	0.00	6.53
2197	2304	1.444250	GTCTGGGTCGTTGTGGACA	59.556	57.895	0.00	0.00	38.70	4.02
2275	2382	3.307906	TACCGTGCCTGTCGCCTT	61.308	61.111	0.00	0.00	36.24	4.35
2360	2469	1.646447	AGGTAGTGGAGGATGGAGTCA	59.354	52.381	0.00	0.00	0.00	3.41
2400	2509	0.911045	TGGCAGCTCCTCCTTGATGA	60.911	55.000	0.00	0.00	35.26	2.92
2408	2517	1.153289	CTCCTTGATGAGGCGGTGG	60.153	63.158	0.00	0.00	45.87	4.61
2412	2521	0.606401	CTTGATGAGGCGGTGGTTGT	60.606	55.000	0.00	0.00	0.00	3.32
2415	2524	1.078426	ATGAGGCGGTGGTTGTAGC	60.078	57.895	0.00	0.00	0.00	3.58
2443	2552	0.941463	GACGTGGGCTCATAGATGCG	60.941	60.000	0.00	0.00	0.00	4.73
2462	2571	3.708734	GCGTACTGGTTGCGCGTT	61.709	61.111	8.43	0.00	41.70	4.84
2465	2574	1.623081	CGTACTGGTTGCGCGTTGAT	61.623	55.000	8.43	0.00	0.00	2.57
2484	2593	2.581354	GCGACACTGGCTCATCCT	59.419	61.111	0.00	0.00	35.26	3.24
2490	2599	0.036952	CACTGGCTCATCCTTGACGT	60.037	55.000	0.00	0.00	35.26	4.34
2512	2621	3.284336	TCCGATCTGGACACCACG	58.716	61.111	2.65	0.00	43.74	4.94
2513	2622	1.303806	TCCGATCTGGACACCACGA	60.304	57.895	2.65	0.00	43.74	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	7.318141	TCCGTTTTACAACTAATAGTGAGGAG	58.682	38.462	0.00	0.00	0.00	3.69
65	66	5.133941	TGAAGCCCAACTACAAATAACACA	58.866	37.500	0.00	0.00	0.00	3.72
126	127	7.095229	GCATTTCCTCCACTTTTTATTTCCAAC	60.095	37.037	0.00	0.00	0.00	3.77
128	129	6.269769	AGCATTTCCTCCACTTTTTATTTCCA	59.730	34.615	0.00	0.00	0.00	3.53
129	130	6.701340	AGCATTTCCTCCACTTTTTATTTCC	58.299	36.000	0.00	0.00	0.00	3.13
184	185	5.338632	ACCCATATTCGATACCCACATCTA	58.661	41.667	0.00	0.00	0.00	1.98
316	317	8.783093	TCTGACTTTGTTAACACCATTATTCTG	58.217	33.333	8.07	3.18	0.00	3.02
340	341	9.875691	GGGAAAAGCAAATTGTATCTTAATTCT	57.124	29.630	0.00	0.00	0.00	2.40
353	354	2.028476	GCCGGTTAGGGAAAAGCAAATT	60.028	45.455	1.90	0.00	41.48	1.82
410	411	4.686972	TGTCACCAAATTCAAATGCGAAA	58.313	34.783	0.00	0.00	0.00	3.46
420	421	5.540911	ACCACAATCATTGTCACCAAATTC	58.459	37.500	0.00	0.00	43.23	2.17
422	423	6.351202	CCATACCACAATCATTGTCACCAAAT	60.351	38.462	0.00	0.00	43.23	2.32
469	470	9.352784	GGAAATTTCGAATGAATGAAACATACA	57.647	29.630	11.95	0.00	36.96	2.29
501	502	2.543653	GCCTTTAACTGGTTGTGCACAG	60.544	50.000	20.59	10.98	40.48	3.66
592	593	9.903682	AAGACTGAAATGAATGAACAAATACAG	57.096	29.630	0.00	0.00	0.00	2.74
672	673	7.124347	TGACCAAAGTAAATTACAAGCTACG	57.876	36.000	5.89	0.00	0.00	3.51
786	815	0.034380	ACTAGAGGCGAGCAGGTACA	60.034	55.000	0.00	0.00	0.00	2.90
787	816	1.874872	CTACTAGAGGCGAGCAGGTAC	59.125	57.143	0.00	0.00	0.00	3.34
788	817	1.767088	TCTACTAGAGGCGAGCAGGTA	59.233	52.381	0.00	0.00	0.00	3.08
789	818	0.547075	TCTACTAGAGGCGAGCAGGT	59.453	55.000	0.00	0.00	0.00	4.00
790	819	1.681538	TTCTACTAGAGGCGAGCAGG	58.318	55.000	0.00	0.00	0.00	4.85
791	820	3.378742	TCTTTTCTACTAGAGGCGAGCAG	59.621	47.826	0.00	0.00	0.00	4.24
792	821	3.353557	TCTTTTCTACTAGAGGCGAGCA	58.646	45.455	0.00	0.00	0.00	4.26
793	822	4.373348	TTCTTTTCTACTAGAGGCGAGC	57.627	45.455	0.00	0.00	0.00	5.03
794	823	7.062488	GTCTTTTTCTTTTCTACTAGAGGCGAG	59.938	40.741	0.00	0.00	0.00	5.03
795	824	6.867293	GTCTTTTTCTTTTCTACTAGAGGCGA	59.133	38.462	0.00	0.00	0.00	5.54
796	825	6.645415	TGTCTTTTTCTTTTCTACTAGAGGCG	59.355	38.462	0.00	0.00	0.00	5.52
797	826	7.658167	AGTGTCTTTTTCTTTTCTACTAGAGGC	59.342	37.037	0.00	0.00	0.00	4.70
798	827	8.983724	CAGTGTCTTTTTCTTTTCTACTAGAGG	58.016	37.037	0.00	0.00	0.00	3.69
799	828	9.535878	ACAGTGTCTTTTTCTTTTCTACTAGAG	57.464	33.333	0.00	0.00	0.00	2.43
936	991	1.002134	CAATTCTCGTGGCCCCACT	60.002	57.895	14.93	0.00	44.16	4.00
1039	1105	3.764434	TCACTCTGGACCTGTAGATGTTC	59.236	47.826	0.00	0.00	0.00	3.18
1041	1107	3.093057	GTCACTCTGGACCTGTAGATGT	58.907	50.000	0.00	0.00	0.00	3.06
1248	1318	2.351777	CCTCCAGGTCGACACTGAA	58.648	57.895	26.08	12.44	38.20	3.02
1546	1618	4.355543	TGCTTCTGTGAACAAGAACAAC	57.644	40.909	0.00	0.00	0.00	3.32
1589	1661	2.487762	CAGCGTTGAAGATGGCCTAAAA	59.512	45.455	3.32	0.00	0.00	1.52
1610	1682	1.142474	CGTTGTCCGGTTTACAGGTC	58.858	55.000	0.00	0.00	32.79	3.85
1616	1688	2.843669	GGATGCGTTGTCCGGTTTA	58.156	52.632	0.00	0.00	36.94	2.01
1622	1694	3.244579	GTCTATAAACGGATGCGTTGTCC	59.755	47.826	25.93	7.33	31.96	4.02
1623	1695	3.861113	TGTCTATAAACGGATGCGTTGTC	59.139	43.478	25.93	11.14	31.96	3.18
1627	1699	2.456989	CGTGTCTATAAACGGATGCGT	58.543	47.619	6.39	6.39	36.17	5.24
1638	1710	4.313282	CGACTCCTACATCCGTGTCTATA	58.687	47.826	0.00	0.00	39.77	1.31
1641	1713	1.380524	CGACTCCTACATCCGTGTCT	58.619	55.000	0.00	0.00	39.77	3.41
1744	1818	6.750039	CCTTTTTACGCAAATTATGTCGGAAT	59.250	34.615	0.00	0.00	33.49	3.01
1748	1822	6.579292	TCAACCTTTTTACGCAAATTATGTCG	59.421	34.615	0.00	0.00	35.57	4.35
1761	1835	9.550811	AAACGATCGAAATATCAACCTTTTTAC	57.449	29.630	24.34	0.00	0.00	2.01
1767	1842	9.590451	TTAGTTAAACGATCGAAATATCAACCT	57.410	29.630	24.34	6.92	0.00	3.50
1863	1959	4.054455	CGACGACGGCACAAACGG	62.054	66.667	0.00	0.00	35.72	4.44
1864	1960	3.324671	ACGACGACGGCACAAACG	61.325	61.111	12.58	0.00	44.46	3.60
1948	2053	4.399395	CTGGGCAGCTCCTTCGCA	62.399	66.667	0.00	0.00	34.39	5.10
2102	2208	0.827089	CATGGCCACCACCTTGACAA	60.827	55.000	8.16	0.00	35.80	3.18
2118	2224	1.299468	GAGACGACCGCTAGGCATG	60.299	63.158	0.00	0.00	42.76	4.06
2120	2226	3.138798	GGAGACGACCGCTAGGCA	61.139	66.667	0.00	0.00	42.76	4.75
2197	2304	1.667830	CGACACGGTGCTGGAATGT	60.668	57.895	8.30	0.00	0.00	2.71
2360	2469	2.733127	CGTGATAACGAAGGCACGT	58.267	52.632	0.00	4.10	46.28	4.49
2400	2509	4.388499	CCGCTACAACCACCGCCT	62.388	66.667	0.00	0.00	0.00	5.52
2408	2517	4.382320	TCACCGCCCCGCTACAAC	62.382	66.667	0.00	0.00	0.00	3.32
2423	2532	0.104855	GCATCTATGAGCCCACGTCA	59.895	55.000	0.00	0.00	0.00	4.35
2429	2538	2.359230	GCCCGCATCTATGAGCCC	60.359	66.667	0.00	0.00	0.00	5.19
2437	2546	2.656069	AACCAGTACGCCCGCATCT	61.656	57.895	0.00	0.00	0.00	2.90
2461	2570	1.375908	GAGCCAGTGTCGCCATCAA	60.376	57.895	0.00	0.00	0.00	2.57
2462	2571	1.902765	ATGAGCCAGTGTCGCCATCA	61.903	55.000	0.00	0.00	0.00	3.07
2465	2574	2.265739	GATGAGCCAGTGTCGCCA	59.734	61.111	0.00	0.00	0.00	5.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.