Multiple sequence alignment - TraesCS2D01G276200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G276200 chr2D 100.000 4187 0 0 1 4187 345835234 345831048 0.000000e+00 7733
1 TraesCS2D01G276200 chr2B 96.922 2404 74 0 957 3360 411498926 411496523 0.000000e+00 4030
2 TraesCS2D01G276200 chr2B 93.805 226 10 4 3922 4143 411494719 411494494 1.860000e-88 337
3 TraesCS2D01G276200 chr2B 78.454 427 46 18 540 937 411501914 411501505 1.950000e-58 237
4 TraesCS2D01G276200 chr2B 90.503 179 11 4 366 544 411502122 411501950 9.050000e-57 231
5 TraesCS2D01G276200 chr2B 93.548 124 7 1 3381 3503 411496532 411496409 2.570000e-42 183
6 TraesCS2D01G276200 chr2B 94.231 104 6 0 144 247 411502241 411502138 4.330000e-35 159
7 TraesCS2D01G276200 chr2B 97.531 81 2 0 3677 3757 411494836 411494756 5.640000e-29 139
8 TraesCS2D01G276200 chr2A 96.133 2405 85 3 957 3360 457936609 457939006 0.000000e+00 3919
9 TraesCS2D01G276200 chr2A 97.661 513 10 2 3677 4187 457940269 457940781 0.000000e+00 880
10 TraesCS2D01G276200 chr2A 93.980 299 17 1 3381 3678 457938997 457939295 6.380000e-123 451
11 TraesCS2D01G276200 chr2A 82.432 296 20 13 540 820 457936327 457936605 3.260000e-56 230
12 TraesCS2D01G276200 chr7A 93.893 131 8 0 3793 3923 26829865 26829735 9.180000e-47 198
13 TraesCS2D01G276200 chr7A 93.130 131 9 0 3793 3923 26830724 26830594 4.270000e-45 193
14 TraesCS2D01G276200 chr7A 92.366 131 9 1 3793 3923 26830023 26829894 7.150000e-43 185
15 TraesCS2D01G276200 chr7A 93.043 115 8 0 3793 3907 26830565 26830451 7.200000e-38 169
16 TraesCS2D01G276200 chr7A 92.135 89 7 0 3793 3881 696636454 696636366 4.390000e-25 126
17 TraesCS2D01G276200 chr7B 91.791 134 10 1 3793 3925 72225772 72225905 7.150000e-43 185
18 TraesCS2D01G276200 chr7B 90.551 127 12 0 3794 3920 592424961 592424835 7.200000e-38 169
19 TraesCS2D01G276200 chr7D 95.146 103 5 0 3795 3897 204877210 204877312 3.350000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G276200 chr2D 345831048 345835234 4186 True 7733.000000 7733 100.0000 1 4187 1 chr2D.!!$R1 4186
1 TraesCS2D01G276200 chr2B 411494494 411502241 7747 True 759.428571 4030 92.1420 144 4143 7 chr2B.!!$R1 3999
2 TraesCS2D01G276200 chr2A 457936327 457940781 4454 False 1370.000000 3919 92.5515 540 4187 4 chr2A.!!$F1 3647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 249 0.032130 TGGTCGTGTGCAGAAGAGAC 59.968 55.0 0.00 3.49 0.00 3.36 F
250 251 0.040336 GTCGTGTGCAGAAGAGACGA 60.040 55.0 0.00 0.00 36.75 4.20 F
251 252 0.040336 TCGTGTGCAGAAGAGACGAC 60.040 55.0 0.00 0.00 34.32 4.34 F
342 343 0.109597 GGGAGAAGCAACGCACAATG 60.110 55.0 0.00 0.00 0.00 2.82 F
477 478 0.174845 AATCGTAGCGCTAGGTGCAA 59.825 50.0 30.07 15.87 42.00 4.08 F
559 600 0.179073 CGACAACTAGCTGATGGGGG 60.179 60.0 0.00 0.00 0.00 5.40 F
1752 4385 0.179234 TCGACAGTGTTTTGAGGGCA 59.821 50.0 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 4635 0.108804 GAACCCGAATCGTGCTCTGA 60.109 55.000 0.82 0.00 0.00 3.27 R
2010 4643 2.534349 CAGATTGTACGAACCCGAATCG 59.466 50.000 0.00 0.00 45.47 3.34 R
2140 4773 3.519510 TCCTCCAACTTCCCATTCTGTAG 59.480 47.826 0.00 0.00 0.00 2.74 R
2258 4891 7.119846 ACATGACCACAAATAGTTTTAGAGCTC 59.880 37.037 5.27 5.27 0.00 4.09 R
2464 5097 2.813474 TGCGCTACGTGCATCACC 60.813 61.111 9.73 0.00 44.36 4.02 R
2566 5199 6.650120 TCAACATCCTCCCAAATTCTACTAC 58.350 40.000 0.00 0.00 0.00 2.73 R
3720 8684 0.108329 CTCACGTCATACCCACCCAC 60.108 60.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.535833 CAGGTAGGACACACGAGACT 58.464 55.000 0.00 0.00 0.00 3.24
20 21 1.887198 CAGGTAGGACACACGAGACTT 59.113 52.381 0.00 0.00 0.00 3.01
21 22 2.095161 CAGGTAGGACACACGAGACTTC 60.095 54.545 0.00 0.00 0.00 3.01
22 23 1.884579 GGTAGGACACACGAGACTTCA 59.115 52.381 0.00 0.00 0.00 3.02
23 24 2.095161 GGTAGGACACACGAGACTTCAG 60.095 54.545 0.00 0.00 0.00 3.02
24 25 1.693627 AGGACACACGAGACTTCAGT 58.306 50.000 0.00 0.00 0.00 3.41
25 26 2.860009 AGGACACACGAGACTTCAGTA 58.140 47.619 0.00 0.00 0.00 2.74
26 27 2.814919 AGGACACACGAGACTTCAGTAG 59.185 50.000 0.00 0.00 0.00 2.57
27 28 2.586900 GACACACGAGACTTCAGTAGC 58.413 52.381 0.00 0.00 0.00 3.58
28 29 1.954382 ACACACGAGACTTCAGTAGCA 59.046 47.619 0.00 0.00 0.00 3.49
29 30 2.287668 ACACACGAGACTTCAGTAGCAC 60.288 50.000 0.00 0.00 0.00 4.40
30 31 1.269998 ACACGAGACTTCAGTAGCACC 59.730 52.381 0.00 0.00 0.00 5.01
31 32 1.269723 CACGAGACTTCAGTAGCACCA 59.730 52.381 0.00 0.00 0.00 4.17
32 33 1.269998 ACGAGACTTCAGTAGCACCAC 59.730 52.381 0.00 0.00 0.00 4.16
33 34 1.269723 CGAGACTTCAGTAGCACCACA 59.730 52.381 0.00 0.00 0.00 4.17
34 35 2.094494 CGAGACTTCAGTAGCACCACAT 60.094 50.000 0.00 0.00 0.00 3.21
35 36 3.516615 GAGACTTCAGTAGCACCACATC 58.483 50.000 0.00 0.00 0.00 3.06
36 37 2.094494 AGACTTCAGTAGCACCACATCG 60.094 50.000 0.00 0.00 0.00 3.84
37 38 1.893137 ACTTCAGTAGCACCACATCGA 59.107 47.619 0.00 0.00 0.00 3.59
38 39 2.094494 ACTTCAGTAGCACCACATCGAG 60.094 50.000 0.00 0.00 0.00 4.04
39 40 0.173481 TCAGTAGCACCACATCGAGC 59.827 55.000 0.00 0.00 0.00 5.03
40 41 0.174389 CAGTAGCACCACATCGAGCT 59.826 55.000 0.08 0.08 40.92 4.09
41 42 0.898320 AGTAGCACCACATCGAGCTT 59.102 50.000 0.00 0.00 38.47 3.74
42 43 2.100197 AGTAGCACCACATCGAGCTTA 58.900 47.619 0.00 0.00 38.47 3.09
43 44 2.099921 AGTAGCACCACATCGAGCTTAG 59.900 50.000 0.00 0.00 38.47 2.18
44 45 0.176680 AGCACCACATCGAGCTTAGG 59.823 55.000 0.00 0.00 32.52 2.69
45 46 0.175760 GCACCACATCGAGCTTAGGA 59.824 55.000 0.00 0.00 0.00 2.94
46 47 1.405526 GCACCACATCGAGCTTAGGAA 60.406 52.381 0.00 0.00 0.00 3.36
47 48 2.935238 GCACCACATCGAGCTTAGGAAA 60.935 50.000 0.00 0.00 0.00 3.13
48 49 2.932614 CACCACATCGAGCTTAGGAAAG 59.067 50.000 0.00 0.00 35.68 2.62
60 61 4.021102 CTTAGGAAAGCCAACAAGGAGA 57.979 45.455 0.00 0.00 41.22 3.71
61 62 4.398319 CTTAGGAAAGCCAACAAGGAGAA 58.602 43.478 0.00 0.00 41.22 2.87
62 63 2.587522 AGGAAAGCCAACAAGGAGAAC 58.412 47.619 0.00 0.00 41.22 3.01
63 64 1.613925 GGAAAGCCAACAAGGAGAACC 59.386 52.381 0.00 0.00 41.22 3.62
64 65 1.266989 GAAAGCCAACAAGGAGAACCG 59.733 52.381 0.00 0.00 41.22 4.44
65 66 0.537371 AAGCCAACAAGGAGAACCGG 60.537 55.000 0.00 0.00 41.22 5.28
66 67 1.072505 GCCAACAAGGAGAACCGGA 59.927 57.895 9.46 0.00 41.22 5.14
67 68 0.955919 GCCAACAAGGAGAACCGGAG 60.956 60.000 9.46 0.00 41.22 4.63
68 69 0.955919 CCAACAAGGAGAACCGGAGC 60.956 60.000 9.46 0.00 41.22 4.70
69 70 0.035458 CAACAAGGAGAACCGGAGCT 59.965 55.000 9.46 4.04 41.83 4.09
70 71 0.765510 AACAAGGAGAACCGGAGCTT 59.234 50.000 9.46 0.00 41.83 3.74
71 72 0.035458 ACAAGGAGAACCGGAGCTTG 59.965 55.000 9.46 2.71 41.83 4.01
72 73 1.003233 AAGGAGAACCGGAGCTTGC 60.003 57.895 9.46 0.00 41.83 4.01
73 74 1.484444 AAGGAGAACCGGAGCTTGCT 61.484 55.000 9.46 0.00 41.83 3.91
74 75 1.743252 GGAGAACCGGAGCTTGCTG 60.743 63.158 9.46 0.00 0.00 4.41
75 76 1.743252 GAGAACCGGAGCTTGCTGG 60.743 63.158 9.46 0.00 40.29 4.85
76 77 2.172483 GAGAACCGGAGCTTGCTGGA 62.172 60.000 9.46 0.00 37.74 3.86
77 78 1.743252 GAACCGGAGCTTGCTGGAG 60.743 63.158 9.46 0.00 37.74 3.86
78 79 3.259633 AACCGGAGCTTGCTGGAGG 62.260 63.158 9.46 3.16 37.74 4.30
79 80 3.393970 CCGGAGCTTGCTGGAGGA 61.394 66.667 0.00 0.00 36.35 3.71
80 81 2.186384 CGGAGCTTGCTGGAGGAG 59.814 66.667 0.00 0.00 0.00 3.69
81 82 2.354401 CGGAGCTTGCTGGAGGAGA 61.354 63.158 0.00 0.00 0.00 3.71
82 83 1.684386 CGGAGCTTGCTGGAGGAGAT 61.684 60.000 0.00 0.00 0.00 2.75
83 84 0.106521 GGAGCTTGCTGGAGGAGATC 59.893 60.000 0.00 0.00 0.00 2.75
84 85 0.249405 GAGCTTGCTGGAGGAGATCG 60.249 60.000 0.00 0.00 0.00 3.69
85 86 1.886777 GCTTGCTGGAGGAGATCGC 60.887 63.158 0.00 0.00 0.00 4.58
86 87 1.591059 CTTGCTGGAGGAGATCGCG 60.591 63.158 0.00 0.00 0.00 5.87
87 88 2.009424 CTTGCTGGAGGAGATCGCGA 62.009 60.000 13.09 13.09 0.00 5.87
88 89 1.395045 TTGCTGGAGGAGATCGCGAT 61.395 55.000 23.97 23.97 0.00 4.58
89 90 1.372748 GCTGGAGGAGATCGCGATG 60.373 63.158 29.09 10.50 0.00 3.84
90 91 2.037053 CTGGAGGAGATCGCGATGT 58.963 57.895 29.09 24.35 0.00 3.06
91 92 0.318529 CTGGAGGAGATCGCGATGTG 60.319 60.000 29.09 5.39 0.00 3.21
92 93 1.006805 GGAGGAGATCGCGATGTGG 60.007 63.158 29.09 0.00 0.00 4.17
93 94 1.736586 GAGGAGATCGCGATGTGGT 59.263 57.895 29.09 11.68 0.00 4.16
94 95 0.596083 GAGGAGATCGCGATGTGGTG 60.596 60.000 29.09 0.00 0.00 4.17
95 96 1.592669 GGAGATCGCGATGTGGTGG 60.593 63.158 29.09 0.00 0.00 4.61
96 97 1.141881 GAGATCGCGATGTGGTGGT 59.858 57.895 29.09 0.00 0.00 4.16
97 98 1.148157 GAGATCGCGATGTGGTGGTG 61.148 60.000 29.09 0.00 0.00 4.17
98 99 2.125147 ATCGCGATGTGGTGGTGG 60.125 61.111 23.04 0.00 0.00 4.61
99 100 2.852495 GATCGCGATGTGGTGGTGGT 62.852 60.000 29.09 0.00 0.00 4.16
100 101 2.852495 ATCGCGATGTGGTGGTGGTC 62.852 60.000 23.04 0.00 0.00 4.02
101 102 2.031919 GCGATGTGGTGGTGGTCA 59.968 61.111 0.00 0.00 0.00 4.02
102 103 2.325082 GCGATGTGGTGGTGGTCAC 61.325 63.158 0.00 0.00 45.34 3.67
112 113 2.112297 GTGGTCACCAAAGCCGGA 59.888 61.111 5.05 0.00 34.18 5.14
113 114 1.966451 GTGGTCACCAAAGCCGGAG 60.966 63.158 5.05 0.00 34.18 4.63
114 115 2.144078 TGGTCACCAAAGCCGGAGA 61.144 57.895 5.05 0.00 0.00 3.71
115 116 1.072505 GGTCACCAAAGCCGGAGAA 59.927 57.895 5.05 0.00 0.00 2.87
116 117 0.955919 GGTCACCAAAGCCGGAGAAG 60.956 60.000 5.05 0.00 0.00 2.85
117 118 0.034896 GTCACCAAAGCCGGAGAAGA 59.965 55.000 5.05 0.00 0.00 2.87
118 119 0.034896 TCACCAAAGCCGGAGAAGAC 59.965 55.000 5.05 0.00 0.00 3.01
119 120 1.004918 ACCAAAGCCGGAGAAGACG 60.005 57.895 5.05 0.00 0.00 4.18
120 121 1.292223 CCAAAGCCGGAGAAGACGA 59.708 57.895 5.05 0.00 0.00 4.20
121 122 0.108138 CCAAAGCCGGAGAAGACGAT 60.108 55.000 5.05 0.00 0.00 3.73
122 123 1.676014 CCAAAGCCGGAGAAGACGATT 60.676 52.381 5.05 0.00 0.00 3.34
123 124 2.076863 CAAAGCCGGAGAAGACGATTT 58.923 47.619 5.05 0.00 0.00 2.17
124 125 1.726853 AAGCCGGAGAAGACGATTTG 58.273 50.000 5.05 0.00 0.00 2.32
125 126 0.108138 AGCCGGAGAAGACGATTTGG 60.108 55.000 5.05 0.00 0.00 3.28
126 127 1.090052 GCCGGAGAAGACGATTTGGG 61.090 60.000 5.05 0.00 0.00 4.12
127 128 0.249398 CCGGAGAAGACGATTTGGGT 59.751 55.000 0.00 0.00 0.00 4.51
128 129 1.359848 CGGAGAAGACGATTTGGGTG 58.640 55.000 0.00 0.00 0.00 4.61
129 130 1.337823 CGGAGAAGACGATTTGGGTGT 60.338 52.381 0.00 0.00 0.00 4.16
130 131 2.347731 GGAGAAGACGATTTGGGTGTC 58.652 52.381 0.00 0.00 0.00 3.67
131 132 2.347731 GAGAAGACGATTTGGGTGTCC 58.652 52.381 0.00 0.00 33.09 4.02
132 133 1.076332 GAAGACGATTTGGGTGTCCG 58.924 55.000 0.00 0.00 35.24 4.79
133 134 0.682852 AAGACGATTTGGGTGTCCGA 59.317 50.000 0.00 0.00 35.24 4.55
134 135 0.037605 AGACGATTTGGGTGTCCGAC 60.038 55.000 0.00 0.00 35.24 4.79
135 136 1.349259 GACGATTTGGGTGTCCGACG 61.349 60.000 0.00 0.00 35.24 5.12
136 137 1.080366 CGATTTGGGTGTCCGACGA 60.080 57.895 0.00 0.00 35.24 4.20
137 138 0.459585 CGATTTGGGTGTCCGACGAT 60.460 55.000 0.00 0.00 35.24 3.73
138 139 1.734163 GATTTGGGTGTCCGACGATT 58.266 50.000 0.00 0.00 35.24 3.34
139 140 2.081462 GATTTGGGTGTCCGACGATTT 58.919 47.619 0.00 0.00 35.24 2.17
140 141 2.835580 TTTGGGTGTCCGACGATTTA 57.164 45.000 0.00 0.00 35.24 1.40
141 142 2.373540 TTGGGTGTCCGACGATTTAG 57.626 50.000 0.00 0.00 35.24 1.85
142 143 0.533491 TGGGTGTCCGACGATTTAGG 59.467 55.000 0.00 0.00 35.24 2.69
156 157 1.983119 TTTAGGGCCTCCTGCATCGG 61.983 60.000 10.74 0.00 44.61 4.18
202 203 4.269523 AAGGTGGAGCGCCTGCAA 62.270 61.111 8.34 0.00 44.35 4.08
212 213 1.367102 CGCCTGCAAATGGTGGTTT 59.633 52.632 0.00 0.00 0.00 3.27
217 218 2.094545 CCTGCAAATGGTGGTTTAGCTC 60.095 50.000 0.00 0.00 0.00 4.09
241 242 1.095228 AGGTTGTTGGTCGTGTGCAG 61.095 55.000 0.00 0.00 0.00 4.41
243 244 0.730265 GTTGTTGGTCGTGTGCAGAA 59.270 50.000 0.00 0.00 0.00 3.02
247 248 0.750249 TTGGTCGTGTGCAGAAGAGA 59.250 50.000 0.00 0.00 0.00 3.10
248 249 0.032130 TGGTCGTGTGCAGAAGAGAC 59.968 55.000 0.00 3.49 0.00 3.36
249 250 1.004277 GGTCGTGTGCAGAAGAGACG 61.004 60.000 0.00 0.00 0.00 4.18
250 251 0.040336 GTCGTGTGCAGAAGAGACGA 60.040 55.000 0.00 0.00 36.75 4.20
251 252 0.040336 TCGTGTGCAGAAGAGACGAC 60.040 55.000 0.00 0.00 34.32 4.34
252 253 1.330779 CGTGTGCAGAAGAGACGACG 61.331 60.000 0.00 0.00 31.71 5.12
254 255 2.089349 GTGCAGAAGAGACGACGCC 61.089 63.158 0.00 0.00 0.00 5.68
256 257 1.372997 GCAGAAGAGACGACGCCAA 60.373 57.895 0.00 0.00 0.00 4.52
257 258 1.618640 GCAGAAGAGACGACGCCAAC 61.619 60.000 0.00 0.00 0.00 3.77
259 260 1.081641 GAAGAGACGACGCCAACGA 60.082 57.895 0.00 0.00 43.93 3.85
260 261 1.335697 GAAGAGACGACGCCAACGAC 61.336 60.000 0.00 0.00 43.93 4.34
266 267 2.769617 GACGCCAACGACGACATG 59.230 61.111 0.00 0.00 43.93 3.21
267 268 1.731613 GACGCCAACGACGACATGA 60.732 57.895 0.00 0.00 43.93 3.07
268 269 1.279527 GACGCCAACGACGACATGAA 61.280 55.000 0.00 0.00 43.93 2.57
269 270 0.876777 ACGCCAACGACGACATGAAA 60.877 50.000 0.00 0.00 43.93 2.69
270 271 0.450482 CGCCAACGACGACATGAAAC 60.450 55.000 0.00 0.00 43.93 2.78
271 272 0.584396 GCCAACGACGACATGAAACA 59.416 50.000 0.00 0.00 0.00 2.83
272 273 1.003331 GCCAACGACGACATGAAACAA 60.003 47.619 0.00 0.00 0.00 2.83
273 274 2.903678 CCAACGACGACATGAAACAAG 58.096 47.619 0.00 0.00 0.00 3.16
274 275 2.298300 CAACGACGACATGAAACAAGC 58.702 47.619 0.00 0.00 0.00 4.01
275 276 1.577468 ACGACGACATGAAACAAGCA 58.423 45.000 0.00 0.00 0.00 3.91
276 277 2.143122 ACGACGACATGAAACAAGCAT 58.857 42.857 0.00 0.00 0.00 3.79
277 278 2.157668 ACGACGACATGAAACAAGCATC 59.842 45.455 0.00 0.00 0.00 3.91
278 279 2.157474 CGACGACATGAAACAAGCATCA 59.843 45.455 0.00 0.00 0.00 3.07
279 280 3.482786 GACGACATGAAACAAGCATCAC 58.517 45.455 0.00 0.00 0.00 3.06
280 281 3.141398 ACGACATGAAACAAGCATCACT 58.859 40.909 0.00 0.00 0.00 3.41
281 282 3.187227 ACGACATGAAACAAGCATCACTC 59.813 43.478 0.00 0.00 0.00 3.51
282 283 3.722957 CGACATGAAACAAGCATCACTCG 60.723 47.826 0.00 0.00 0.00 4.18
283 284 3.141398 ACATGAAACAAGCATCACTCGT 58.859 40.909 0.00 0.00 0.00 4.18
284 285 3.058708 ACATGAAACAAGCATCACTCGTG 60.059 43.478 0.00 0.00 0.00 4.35
285 286 2.560504 TGAAACAAGCATCACTCGTGT 58.439 42.857 0.00 0.00 0.00 4.49
286 287 2.942376 TGAAACAAGCATCACTCGTGTT 59.058 40.909 0.00 0.00 37.65 3.32
287 288 3.376859 TGAAACAAGCATCACTCGTGTTT 59.623 39.130 6.72 6.72 44.46 2.83
288 289 4.142491 TGAAACAAGCATCACTCGTGTTTT 60.142 37.500 8.04 0.00 42.84 2.43
289 290 3.609103 ACAAGCATCACTCGTGTTTTC 57.391 42.857 0.00 0.00 0.00 2.29
290 291 3.206150 ACAAGCATCACTCGTGTTTTCT 58.794 40.909 0.00 0.00 0.00 2.52
291 292 3.248602 ACAAGCATCACTCGTGTTTTCTC 59.751 43.478 0.00 0.00 0.00 2.87
292 293 3.393089 AGCATCACTCGTGTTTTCTCT 57.607 42.857 0.00 0.00 0.00 3.10
293 294 4.521130 AGCATCACTCGTGTTTTCTCTA 57.479 40.909 0.00 0.00 0.00 2.43
294 295 5.078411 AGCATCACTCGTGTTTTCTCTAT 57.922 39.130 0.00 0.00 0.00 1.98
295 296 6.208988 AGCATCACTCGTGTTTTCTCTATA 57.791 37.500 0.00 0.00 0.00 1.31
296 297 6.037098 AGCATCACTCGTGTTTTCTCTATAC 58.963 40.000 0.00 0.00 0.00 1.47
297 298 5.805486 GCATCACTCGTGTTTTCTCTATACA 59.195 40.000 0.00 0.00 0.00 2.29
298 299 6.310467 GCATCACTCGTGTTTTCTCTATACAA 59.690 38.462 0.00 0.00 0.00 2.41
299 300 7.463383 GCATCACTCGTGTTTTCTCTATACAAG 60.463 40.741 0.00 0.00 0.00 3.16
300 301 7.210718 TCACTCGTGTTTTCTCTATACAAGA 57.789 36.000 0.00 0.00 0.00 3.02
301 302 7.827701 TCACTCGTGTTTTCTCTATACAAGAT 58.172 34.615 0.00 0.00 31.66 2.40
302 303 7.755373 TCACTCGTGTTTTCTCTATACAAGATG 59.245 37.037 0.00 0.00 31.66 2.90
303 304 7.755373 CACTCGTGTTTTCTCTATACAAGATGA 59.245 37.037 0.00 0.00 31.66 2.92
304 305 7.971168 ACTCGTGTTTTCTCTATACAAGATGAG 59.029 37.037 0.00 0.00 31.66 2.90
305 306 8.051901 TCGTGTTTTCTCTATACAAGATGAGA 57.948 34.615 0.00 0.00 32.41 3.27
306 307 8.184848 TCGTGTTTTCTCTATACAAGATGAGAG 58.815 37.037 0.00 0.00 36.98 3.20
307 308 8.184848 CGTGTTTTCTCTATACAAGATGAGAGA 58.815 37.037 0.00 0.00 42.04 3.10
308 309 9.515020 GTGTTTTCTCTATACAAGATGAGAGAG 57.485 37.037 0.00 0.00 43.90 3.20
309 310 9.249053 TGTTTTCTCTATACAAGATGAGAGAGT 57.751 33.333 0.00 0.00 43.90 3.24
310 311 9.515020 GTTTTCTCTATACAAGATGAGAGAGTG 57.485 37.037 0.00 0.00 43.90 3.51
311 312 9.467796 TTTTCTCTATACAAGATGAGAGAGTGA 57.532 33.333 0.00 0.00 43.90 3.41
312 313 9.639563 TTTCTCTATACAAGATGAGAGAGTGAT 57.360 33.333 0.00 0.00 43.90 3.06
313 314 8.846943 TCTCTATACAAGATGAGAGAGTGATC 57.153 38.462 0.00 0.00 39.56 2.92
314 315 7.602265 TCTCTATACAAGATGAGAGAGTGATCG 59.398 40.741 0.00 0.00 39.56 3.69
315 316 7.445945 TCTATACAAGATGAGAGAGTGATCGA 58.554 38.462 0.00 0.00 0.00 3.59
316 317 4.898829 ACAAGATGAGAGAGTGATCGAG 57.101 45.455 0.00 0.00 0.00 4.04
317 318 4.269183 ACAAGATGAGAGAGTGATCGAGT 58.731 43.478 0.00 0.00 0.00 4.18
318 319 4.335315 ACAAGATGAGAGAGTGATCGAGTC 59.665 45.833 0.00 0.00 0.00 3.36
319 320 4.422073 AGATGAGAGAGTGATCGAGTCT 57.578 45.455 0.00 3.14 37.03 3.24
323 324 0.941542 GAGAGTGATCGAGTCTCGGG 59.058 60.000 21.63 0.00 40.59 5.14
324 325 0.464735 AGAGTGATCGAGTCTCGGGG 60.465 60.000 21.63 0.00 40.88 5.73
325 326 1.448922 GAGTGATCGAGTCTCGGGGG 61.449 65.000 21.63 0.00 40.88 5.40
326 327 1.453379 GTGATCGAGTCTCGGGGGA 60.453 63.158 21.63 3.04 40.88 4.81
327 328 1.152943 TGATCGAGTCTCGGGGGAG 60.153 63.158 21.63 0.00 40.88 4.30
328 329 1.148723 GATCGAGTCTCGGGGGAGA 59.851 63.158 21.63 1.89 40.88 3.71
329 330 0.465824 GATCGAGTCTCGGGGGAGAA 60.466 60.000 21.63 1.13 40.88 2.87
330 331 0.466555 ATCGAGTCTCGGGGGAGAAG 60.467 60.000 21.63 0.00 40.88 2.85
331 332 2.776913 CGAGTCTCGGGGGAGAAGC 61.777 68.421 14.68 0.00 36.00 3.86
332 333 1.682684 GAGTCTCGGGGGAGAAGCA 60.683 63.158 0.00 0.00 32.39 3.91
333 334 1.229209 AGTCTCGGGGGAGAAGCAA 60.229 57.895 0.00 0.00 32.39 3.91
334 335 1.079057 GTCTCGGGGGAGAAGCAAC 60.079 63.158 0.00 0.00 32.39 4.17
335 336 2.125512 CTCGGGGGAGAAGCAACG 60.126 66.667 0.00 0.00 0.00 4.10
336 337 4.388499 TCGGGGGAGAAGCAACGC 62.388 66.667 0.00 0.00 0.00 4.84
337 338 4.697756 CGGGGGAGAAGCAACGCA 62.698 66.667 0.00 0.00 0.00 5.24
338 339 3.056328 GGGGGAGAAGCAACGCAC 61.056 66.667 0.00 0.00 0.00 5.34
339 340 2.281484 GGGGAGAAGCAACGCACA 60.281 61.111 0.00 0.00 0.00 4.57
340 341 1.896660 GGGGAGAAGCAACGCACAA 60.897 57.895 0.00 0.00 0.00 3.33
341 342 1.244019 GGGGAGAAGCAACGCACAAT 61.244 55.000 0.00 0.00 0.00 2.71
342 343 0.109597 GGGAGAAGCAACGCACAATG 60.110 55.000 0.00 0.00 0.00 2.82
343 344 0.874390 GGAGAAGCAACGCACAATGA 59.126 50.000 0.00 0.00 0.00 2.57
344 345 1.470098 GGAGAAGCAACGCACAATGAT 59.530 47.619 0.00 0.00 0.00 2.45
345 346 2.095059 GGAGAAGCAACGCACAATGATT 60.095 45.455 0.00 0.00 0.00 2.57
346 347 3.126858 GGAGAAGCAACGCACAATGATTA 59.873 43.478 0.00 0.00 0.00 1.75
347 348 4.337763 GAGAAGCAACGCACAATGATTAG 58.662 43.478 0.00 0.00 0.00 1.73
348 349 4.002982 AGAAGCAACGCACAATGATTAGA 58.997 39.130 0.00 0.00 0.00 2.10
349 350 4.455533 AGAAGCAACGCACAATGATTAGAA 59.544 37.500 0.00 0.00 0.00 2.10
350 351 4.970662 AGCAACGCACAATGATTAGAAT 57.029 36.364 0.00 0.00 0.00 2.40
351 352 4.913376 AGCAACGCACAATGATTAGAATC 58.087 39.130 0.00 0.00 35.97 2.52
352 353 3.720818 GCAACGCACAATGATTAGAATCG 59.279 43.478 0.00 0.00 38.26 3.34
353 354 4.494035 GCAACGCACAATGATTAGAATCGA 60.494 41.667 0.00 0.00 38.26 3.59
354 355 5.559227 CAACGCACAATGATTAGAATCGAA 58.441 37.500 0.00 0.00 38.26 3.71
355 356 5.991328 ACGCACAATGATTAGAATCGAAT 57.009 34.783 0.00 0.00 38.26 3.34
356 357 5.741425 ACGCACAATGATTAGAATCGAATG 58.259 37.500 0.00 0.47 38.26 2.67
357 358 5.142265 CGCACAATGATTAGAATCGAATGG 58.858 41.667 0.00 0.00 38.26 3.16
358 359 4.913924 GCACAATGATTAGAATCGAATGGC 59.086 41.667 0.00 0.00 38.26 4.40
359 360 5.506151 GCACAATGATTAGAATCGAATGGCA 60.506 40.000 0.00 0.00 38.26 4.92
360 361 5.911280 CACAATGATTAGAATCGAATGGCAC 59.089 40.000 0.00 0.00 38.26 5.01
361 362 5.589855 ACAATGATTAGAATCGAATGGCACA 59.410 36.000 0.00 0.00 39.97 4.57
362 363 6.263842 ACAATGATTAGAATCGAATGGCACAT 59.736 34.615 0.00 0.00 40.07 3.21
363 364 5.678132 TGATTAGAATCGAATGGCACATG 57.322 39.130 0.00 0.00 40.07 3.21
364 365 4.516321 TGATTAGAATCGAATGGCACATGG 59.484 41.667 0.00 0.00 40.07 3.66
390 391 1.112315 AGCTGAGGAGGGCTATGTCG 61.112 60.000 0.00 0.00 37.00 4.35
433 434 2.512515 GGCCTGATGTGCTCCGAC 60.513 66.667 0.00 0.00 0.00 4.79
442 443 1.640428 TGTGCTCCGACGATGATTTC 58.360 50.000 0.00 0.00 0.00 2.17
456 457 4.148871 CGATGATTTCGTACTCGATTGCAT 59.851 41.667 0.00 0.00 45.65 3.96
477 478 0.174845 AATCGTAGCGCTAGGTGCAA 59.825 50.000 30.07 15.87 42.00 4.08
480 481 1.521681 GTAGCGCTAGGTGCAAGGG 60.522 63.158 19.48 0.00 42.00 3.95
490 491 1.984026 GTGCAAGGGTGGAATGGGG 60.984 63.158 0.00 0.00 0.00 4.96
491 492 2.166346 TGCAAGGGTGGAATGGGGA 61.166 57.895 0.00 0.00 0.00 4.81
492 493 1.380380 GCAAGGGTGGAATGGGGAG 60.380 63.158 0.00 0.00 0.00 4.30
493 494 1.307647 CAAGGGTGGAATGGGGAGG 59.692 63.158 0.00 0.00 0.00 4.30
494 495 1.935931 AAGGGTGGAATGGGGAGGG 60.936 63.158 0.00 0.00 0.00 4.30
495 496 3.429580 GGGTGGAATGGGGAGGGG 61.430 72.222 0.00 0.00 0.00 4.79
559 600 0.179073 CGACAACTAGCTGATGGGGG 60.179 60.000 0.00 0.00 0.00 5.40
567 613 0.253160 AGCTGATGGGGGTGAGGTAA 60.253 55.000 0.00 0.00 0.00 2.85
575 621 2.642807 TGGGGGTGAGGTAAAAGAGAAG 59.357 50.000 0.00 0.00 0.00 2.85
595 641 1.506493 GGTGAGATGGACGATGATGC 58.494 55.000 0.00 0.00 0.00 3.91
669 717 7.556733 AAAATCATGTCAACACAAAAGCATT 57.443 28.000 0.00 0.00 35.64 3.56
738 812 5.001874 GGACGGGTTTTAAAGTTGAGAGAT 58.998 41.667 0.00 0.00 0.00 2.75
758 832 9.767684 GAGAGATCATTTATGTATAGACTGTCG 57.232 37.037 1.52 0.00 0.00 4.35
761 835 8.735315 AGATCATTTATGTATAGACTGTCGAGG 58.265 37.037 1.52 0.00 0.00 4.63
762 836 7.818997 TCATTTATGTATAGACTGTCGAGGT 57.181 36.000 1.52 0.00 0.00 3.85
763 837 8.234136 TCATTTATGTATAGACTGTCGAGGTT 57.766 34.615 1.52 0.00 0.00 3.50
764 838 8.350722 TCATTTATGTATAGACTGTCGAGGTTC 58.649 37.037 1.52 0.00 0.00 3.62
765 839 4.815040 ATGTATAGACTGTCGAGGTTCG 57.185 45.455 1.52 0.00 42.10 3.95
814 888 3.973657 TGAGAGAAAAAGTTACGCTCGT 58.026 40.909 0.00 0.00 34.26 4.18
858 932 4.299796 GGCAGTTCCCCAAGGGCA 62.300 66.667 0.00 0.00 43.94 5.36
859 933 2.203625 GCAGTTCCCCAAGGGCAA 60.204 61.111 0.00 0.00 43.94 4.52
860 934 1.610379 GCAGTTCCCCAAGGGCAAT 60.610 57.895 0.00 0.00 43.94 3.56
865 939 0.252193 TTCCCCAAGGGCAATTCCTG 60.252 55.000 0.00 0.00 43.94 3.86
876 950 1.576356 CAATTCCTGAGCTACTCGCC 58.424 55.000 0.00 0.00 40.39 5.54
878 952 1.739338 ATTCCTGAGCTACTCGCCGG 61.739 60.000 0.00 0.00 40.39 6.13
879 953 4.577246 CCTGAGCTACTCGCCGGC 62.577 72.222 19.07 19.07 40.39 6.13
882 956 4.908877 GAGCTACTCGCCGGCGTC 62.909 72.222 44.16 30.61 40.39 5.19
885 959 4.849329 CTACTCGCCGGCGTCACC 62.849 72.222 44.16 6.58 40.74 4.02
895 969 1.878656 CGGCGTCACCTCTCTCCTTT 61.879 60.000 0.00 0.00 35.61 3.11
905 979 1.272769 CTCTCTCCTTTCGACCCGTTT 59.727 52.381 0.00 0.00 0.00 3.60
937 1011 3.149981 GCCCTATTCTGCCATTCCTTAC 58.850 50.000 0.00 0.00 0.00 2.34
938 1012 3.756117 CCCTATTCTGCCATTCCTTACC 58.244 50.000 0.00 0.00 0.00 2.85
939 1013 3.498661 CCCTATTCTGCCATTCCTTACCC 60.499 52.174 0.00 0.00 0.00 3.69
940 1014 3.138283 CCTATTCTGCCATTCCTTACCCA 59.862 47.826 0.00 0.00 0.00 4.51
941 1015 2.507407 TTCTGCCATTCCTTACCCAC 57.493 50.000 0.00 0.00 0.00 4.61
942 1016 0.623723 TCTGCCATTCCTTACCCACC 59.376 55.000 0.00 0.00 0.00 4.61
943 1017 0.331278 CTGCCATTCCTTACCCACCA 59.669 55.000 0.00 0.00 0.00 4.17
944 1018 0.331278 TGCCATTCCTTACCCACCAG 59.669 55.000 0.00 0.00 0.00 4.00
945 1019 0.331616 GCCATTCCTTACCCACCAGT 59.668 55.000 0.00 0.00 0.00 4.00
946 1020 1.562475 GCCATTCCTTACCCACCAGTA 59.438 52.381 0.00 0.00 0.00 2.74
947 1021 2.682858 GCCATTCCTTACCCACCAGTAC 60.683 54.545 0.00 0.00 0.00 2.73
949 1023 2.419457 TTCCTTACCCACCAGTACCA 57.581 50.000 0.00 0.00 0.00 3.25
953 1027 1.829523 TTACCCACCAGTACCACGCC 61.830 60.000 0.00 0.00 0.00 5.68
954 1028 3.632080 CCCACCAGTACCACGCCA 61.632 66.667 0.00 0.00 0.00 5.69
955 1029 2.668632 CCACCAGTACCACGCCAT 59.331 61.111 0.00 0.00 0.00 4.40
1108 3741 2.204461 TCGACCCAGCCTGACGAAA 61.204 57.895 0.00 0.00 0.00 3.46
1114 3747 1.135315 CAGCCTGACGAAAATGCGG 59.865 57.895 0.00 0.00 35.12 5.69
1396 4029 3.170672 AGGTGCACTGCCAGGTGA 61.171 61.111 17.98 0.00 39.34 4.02
1417 4050 1.985116 AAGTCCGGGTCTGAGAGCC 60.985 63.158 20.32 20.32 45.64 4.70
1752 4385 0.179234 TCGACAGTGTTTTGAGGGCA 59.821 50.000 0.00 0.00 0.00 5.36
1804 4437 4.433615 GAGATCGGTTCATAGCTGTTTGA 58.566 43.478 0.00 0.00 0.00 2.69
1812 4445 5.122396 GGTTCATAGCTGTTTGATTCGAAGT 59.878 40.000 3.35 0.00 0.00 3.01
1865 4498 3.373439 GCTCTTGTGGATCTTTACTGCAG 59.627 47.826 13.48 13.48 0.00 4.41
1944 4577 5.447624 TGATCACATCCAATGCATTGATC 57.552 39.130 35.47 27.82 39.15 2.92
1993 4626 4.938226 CGGAGGAAGCAAAGATAGTTTTCT 59.062 41.667 0.00 0.00 0.00 2.52
1994 4627 5.412904 CGGAGGAAGCAAAGATAGTTTTCTT 59.587 40.000 0.00 0.00 37.56 2.52
2002 4635 8.401490 AGCAAAGATAGTTTTCTTGAAGATGT 57.599 30.769 0.00 0.00 36.12 3.06
2010 4643 5.238214 AGTTTTCTTGAAGATGTCAGAGCAC 59.762 40.000 0.00 0.00 37.61 4.40
2022 4655 1.153823 AGAGCACGATTCGGGTTCG 60.154 57.895 17.66 0.00 44.73 3.95
2140 4773 7.148340 CCTTAAACTCCATGATGTCAGTTCTTC 60.148 40.741 7.29 0.00 0.00 2.87
2430 5063 4.227300 TCCAATAGTTATGTTGGGACAGCT 59.773 41.667 4.49 0.00 45.28 4.24
2464 5097 1.946768 ACTTGAAATGTGGGTGTGTCG 59.053 47.619 0.00 0.00 0.00 4.35
2813 5446 3.931907 AATGCCTGTACCAGCAGATAA 57.068 42.857 11.91 0.00 38.70 1.75
2860 5493 2.301346 CCTGCTGGTATTCAATGGACC 58.699 52.381 0.51 0.00 0.00 4.46
2886 5519 2.727123 TGGGTGAGAAAGTTGCTGAA 57.273 45.000 0.00 0.00 0.00 3.02
3118 5751 8.341892 AGATGAATTATACGTGATGCTAGAGA 57.658 34.615 0.00 0.00 0.00 3.10
3260 5893 2.285892 TGTGTTCGTACATTTGTGTGCG 60.286 45.455 11.82 11.82 46.44 5.34
3334 5968 7.436376 GCTACTGATTTTAAAATTCCTGGATGC 59.564 37.037 14.45 8.45 0.00 3.91
3350 5984 3.321968 TGGATGCACGTATCTTATCTGCT 59.678 43.478 0.00 0.00 0.00 4.24
3351 5985 4.522789 TGGATGCACGTATCTTATCTGCTA 59.477 41.667 0.00 0.00 0.00 3.49
3352 5986 5.010617 TGGATGCACGTATCTTATCTGCTAA 59.989 40.000 0.00 0.00 0.00 3.09
3353 5987 6.102663 GGATGCACGTATCTTATCTGCTAAT 58.897 40.000 0.00 0.00 0.00 1.73
3354 5988 6.035435 GGATGCACGTATCTTATCTGCTAATG 59.965 42.308 0.00 0.00 0.00 1.90
3355 5989 6.084326 TGCACGTATCTTATCTGCTAATGA 57.916 37.500 0.00 0.00 0.00 2.57
3356 5990 6.512297 TGCACGTATCTTATCTGCTAATGAA 58.488 36.000 0.00 0.00 0.00 2.57
3357 5991 6.642540 TGCACGTATCTTATCTGCTAATGAAG 59.357 38.462 0.00 0.00 0.00 3.02
3358 5992 6.863645 GCACGTATCTTATCTGCTAATGAAGA 59.136 38.462 0.00 0.00 31.28 2.87
3359 5993 7.382488 GCACGTATCTTATCTGCTAATGAAGAA 59.618 37.037 0.00 0.00 30.34 2.52
3360 5994 9.249457 CACGTATCTTATCTGCTAATGAAGAAA 57.751 33.333 0.00 0.00 30.34 2.52
3361 5995 9.817809 ACGTATCTTATCTGCTAATGAAGAAAA 57.182 29.630 0.00 0.00 30.34 2.29
3496 6131 9.476202 ACATTTTCTTTTGAAGCAATTACCTAC 57.524 29.630 0.00 0.00 39.88 3.18
3565 6235 7.654520 AGATCAAATTGTGTTTGGATGTCAAAG 59.345 33.333 0.00 0.00 45.00 2.77
3596 6266 9.862149 CTTACCATACCCTATAAAACCAGATTT 57.138 33.333 0.00 0.00 0.00 2.17
3637 6307 6.035327 CGGAAACTATCCTAACCACTTTAACG 59.965 42.308 0.00 0.00 46.98 3.18
3646 6316 3.782656 ACCACTTTAACGATTGGAGGT 57.217 42.857 0.00 0.00 33.02 3.85
3669 6339 4.283363 ACAATGAGATCTGAGCACACTT 57.717 40.909 0.00 0.00 0.00 3.16
3913 8892 5.699915 GCATATCATTCATAGTGTGCAGAGT 59.300 40.000 0.00 0.00 0.00 3.24
3987 8966 6.852853 CCTCGAATATGACAATTTGTGTATGC 59.147 38.462 6.80 3.59 41.96 3.14
4170 9153 4.715534 TGGGTTTGGTGAAATGAGTAGA 57.284 40.909 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.535833 AGTCTCGTGTGTCCTACCTG 58.464 55.000 0.00 0.00 0.00 4.00
1 2 2.161030 GAAGTCTCGTGTGTCCTACCT 58.839 52.381 0.00 0.00 0.00 3.08
2 3 1.884579 TGAAGTCTCGTGTGTCCTACC 59.115 52.381 0.00 0.00 0.00 3.18
3 4 2.553172 ACTGAAGTCTCGTGTGTCCTAC 59.447 50.000 0.00 0.00 0.00 3.18
4 5 2.860009 ACTGAAGTCTCGTGTGTCCTA 58.140 47.619 0.00 0.00 0.00 2.94
5 6 1.693627 ACTGAAGTCTCGTGTGTCCT 58.306 50.000 0.00 0.00 0.00 3.85
6 7 2.668834 GCTACTGAAGTCTCGTGTGTCC 60.669 54.545 0.00 0.00 0.00 4.02
7 8 2.031069 TGCTACTGAAGTCTCGTGTGTC 60.031 50.000 0.00 0.00 0.00 3.67
8 9 1.954382 TGCTACTGAAGTCTCGTGTGT 59.046 47.619 0.00 0.00 0.00 3.72
9 10 2.320367 GTGCTACTGAAGTCTCGTGTG 58.680 52.381 0.00 0.00 0.00 3.82
10 11 1.269998 GGTGCTACTGAAGTCTCGTGT 59.730 52.381 0.00 0.00 0.00 4.49
11 12 1.269723 TGGTGCTACTGAAGTCTCGTG 59.730 52.381 0.00 0.00 0.00 4.35
12 13 1.269998 GTGGTGCTACTGAAGTCTCGT 59.730 52.381 0.00 0.00 0.00 4.18
13 14 1.269723 TGTGGTGCTACTGAAGTCTCG 59.730 52.381 0.00 0.00 0.00 4.04
14 15 3.516615 GATGTGGTGCTACTGAAGTCTC 58.483 50.000 0.00 0.00 0.00 3.36
15 16 2.094494 CGATGTGGTGCTACTGAAGTCT 60.094 50.000 0.00 0.00 0.00 3.24
16 17 2.094700 TCGATGTGGTGCTACTGAAGTC 60.095 50.000 0.00 0.00 0.00 3.01
17 18 1.893137 TCGATGTGGTGCTACTGAAGT 59.107 47.619 0.00 0.00 0.00 3.01
18 19 2.534298 CTCGATGTGGTGCTACTGAAG 58.466 52.381 0.00 0.00 0.00 3.02
19 20 1.404181 GCTCGATGTGGTGCTACTGAA 60.404 52.381 0.00 0.00 0.00 3.02
20 21 0.173481 GCTCGATGTGGTGCTACTGA 59.827 55.000 0.00 0.00 0.00 3.41
21 22 0.174389 AGCTCGATGTGGTGCTACTG 59.826 55.000 0.00 0.00 33.64 2.74
22 23 0.898320 AAGCTCGATGTGGTGCTACT 59.102 50.000 0.00 0.00 35.09 2.57
23 24 2.464865 CTAAGCTCGATGTGGTGCTAC 58.535 52.381 0.00 0.00 35.09 3.58
24 25 1.409064 CCTAAGCTCGATGTGGTGCTA 59.591 52.381 0.00 0.00 35.09 3.49
25 26 0.176680 CCTAAGCTCGATGTGGTGCT 59.823 55.000 0.00 0.00 37.37 4.40
26 27 0.175760 TCCTAAGCTCGATGTGGTGC 59.824 55.000 0.00 0.00 0.00 5.01
27 28 2.672961 TTCCTAAGCTCGATGTGGTG 57.327 50.000 0.00 0.00 0.00 4.17
28 29 3.252974 CTTTCCTAAGCTCGATGTGGT 57.747 47.619 0.00 0.00 0.00 4.16
39 40 4.021102 TCTCCTTGTTGGCTTTCCTAAG 57.979 45.455 0.00 0.00 35.26 2.18
40 41 4.142038 GTTCTCCTTGTTGGCTTTCCTAA 58.858 43.478 0.00 0.00 35.26 2.69
41 42 3.497942 GGTTCTCCTTGTTGGCTTTCCTA 60.498 47.826 0.00 0.00 35.26 2.94
42 43 2.587522 GTTCTCCTTGTTGGCTTTCCT 58.412 47.619 0.00 0.00 35.26 3.36
43 44 1.613925 GGTTCTCCTTGTTGGCTTTCC 59.386 52.381 0.00 0.00 35.26 3.13
44 45 1.266989 CGGTTCTCCTTGTTGGCTTTC 59.733 52.381 0.00 0.00 35.26 2.62
45 46 1.318576 CGGTTCTCCTTGTTGGCTTT 58.681 50.000 0.00 0.00 35.26 3.51
46 47 0.537371 CCGGTTCTCCTTGTTGGCTT 60.537 55.000 0.00 0.00 35.26 4.35
47 48 1.073199 CCGGTTCTCCTTGTTGGCT 59.927 57.895 0.00 0.00 35.26 4.75
48 49 0.955919 CTCCGGTTCTCCTTGTTGGC 60.956 60.000 0.00 0.00 35.26 4.52
49 50 0.955919 GCTCCGGTTCTCCTTGTTGG 60.956 60.000 0.00 0.00 37.10 3.77
50 51 0.035458 AGCTCCGGTTCTCCTTGTTG 59.965 55.000 0.00 0.00 0.00 3.33
51 52 0.765510 AAGCTCCGGTTCTCCTTGTT 59.234 50.000 0.00 0.00 0.00 2.83
52 53 0.035458 CAAGCTCCGGTTCTCCTTGT 59.965 55.000 0.00 0.00 0.00 3.16
53 54 1.301677 GCAAGCTCCGGTTCTCCTTG 61.302 60.000 0.00 9.30 36.78 3.61
54 55 1.003233 GCAAGCTCCGGTTCTCCTT 60.003 57.895 0.00 0.00 0.00 3.36
55 56 1.915769 AGCAAGCTCCGGTTCTCCT 60.916 57.895 0.00 0.00 0.00 3.69
56 57 1.743252 CAGCAAGCTCCGGTTCTCC 60.743 63.158 0.00 0.00 0.00 3.71
57 58 1.743252 CCAGCAAGCTCCGGTTCTC 60.743 63.158 0.00 0.00 0.00 2.87
58 59 2.177594 CTCCAGCAAGCTCCGGTTCT 62.178 60.000 0.00 0.00 0.00 3.01
59 60 1.743252 CTCCAGCAAGCTCCGGTTC 60.743 63.158 0.00 0.00 0.00 3.62
60 61 2.348998 CTCCAGCAAGCTCCGGTT 59.651 61.111 0.00 0.00 0.00 4.44
61 62 3.710722 CCTCCAGCAAGCTCCGGT 61.711 66.667 0.00 0.00 0.00 5.28
62 63 3.382803 CTCCTCCAGCAAGCTCCGG 62.383 68.421 0.00 0.00 0.00 5.14
63 64 1.684386 ATCTCCTCCAGCAAGCTCCG 61.684 60.000 0.00 0.00 0.00 4.63
64 65 0.106521 GATCTCCTCCAGCAAGCTCC 59.893 60.000 0.00 0.00 0.00 4.70
65 66 0.249405 CGATCTCCTCCAGCAAGCTC 60.249 60.000 0.00 0.00 0.00 4.09
66 67 1.821936 CGATCTCCTCCAGCAAGCT 59.178 57.895 0.00 0.00 0.00 3.74
67 68 1.886777 GCGATCTCCTCCAGCAAGC 60.887 63.158 0.00 0.00 0.00 4.01
68 69 1.591059 CGCGATCTCCTCCAGCAAG 60.591 63.158 0.00 0.00 0.00 4.01
69 70 1.395045 ATCGCGATCTCCTCCAGCAA 61.395 55.000 17.62 0.00 0.00 3.91
70 71 1.829970 ATCGCGATCTCCTCCAGCA 60.830 57.895 17.62 0.00 0.00 4.41
71 72 1.372748 CATCGCGATCTCCTCCAGC 60.373 63.158 20.85 0.00 0.00 4.85
72 73 0.318529 CACATCGCGATCTCCTCCAG 60.319 60.000 20.85 7.99 0.00 3.86
73 74 1.735973 CACATCGCGATCTCCTCCA 59.264 57.895 20.85 0.00 0.00 3.86
74 75 1.006805 CCACATCGCGATCTCCTCC 60.007 63.158 20.85 0.00 0.00 4.30
75 76 0.596083 CACCACATCGCGATCTCCTC 60.596 60.000 20.85 0.00 0.00 3.71
76 77 1.439228 CACCACATCGCGATCTCCT 59.561 57.895 20.85 0.00 0.00 3.69
77 78 1.592669 CCACCACATCGCGATCTCC 60.593 63.158 20.85 0.00 0.00 3.71
78 79 1.141881 ACCACCACATCGCGATCTC 59.858 57.895 20.85 0.00 0.00 2.75
79 80 1.153568 CACCACCACATCGCGATCT 60.154 57.895 20.85 4.37 0.00 2.75
80 81 2.173669 CCACCACCACATCGCGATC 61.174 63.158 20.85 0.00 0.00 3.69
81 82 2.125147 CCACCACCACATCGCGAT 60.125 61.111 17.62 17.62 0.00 4.58
82 83 3.583276 GACCACCACCACATCGCGA 62.583 63.158 13.09 13.09 0.00 5.87
83 84 3.118454 GACCACCACCACATCGCG 61.118 66.667 0.00 0.00 0.00 5.87
84 85 2.031919 TGACCACCACCACATCGC 59.968 61.111 0.00 0.00 0.00 4.58
85 86 3.966215 GTGACCACCACCACATCG 58.034 61.111 0.00 0.00 39.86 3.84
95 96 1.966451 CTCCGGCTTTGGTGACCAC 60.966 63.158 2.46 0.00 30.78 4.16
96 97 1.701031 TTCTCCGGCTTTGGTGACCA 61.701 55.000 0.00 0.00 31.60 4.02
97 98 0.955919 CTTCTCCGGCTTTGGTGACC 60.956 60.000 0.00 0.00 31.60 4.02
98 99 0.034896 TCTTCTCCGGCTTTGGTGAC 59.965 55.000 0.00 0.00 31.60 3.67
99 100 0.034896 GTCTTCTCCGGCTTTGGTGA 59.965 55.000 0.00 0.00 0.00 4.02
100 101 1.291877 CGTCTTCTCCGGCTTTGGTG 61.292 60.000 0.00 0.00 0.00 4.17
101 102 1.004918 CGTCTTCTCCGGCTTTGGT 60.005 57.895 0.00 0.00 0.00 3.67
102 103 0.108138 ATCGTCTTCTCCGGCTTTGG 60.108 55.000 0.00 0.00 0.00 3.28
103 104 1.726853 AATCGTCTTCTCCGGCTTTG 58.273 50.000 0.00 0.00 0.00 2.77
104 105 2.076863 CAAATCGTCTTCTCCGGCTTT 58.923 47.619 0.00 0.00 0.00 3.51
105 106 1.676014 CCAAATCGTCTTCTCCGGCTT 60.676 52.381 0.00 0.00 0.00 4.35
106 107 0.108138 CCAAATCGTCTTCTCCGGCT 60.108 55.000 0.00 0.00 0.00 5.52
107 108 1.090052 CCCAAATCGTCTTCTCCGGC 61.090 60.000 0.00 0.00 0.00 6.13
108 109 0.249398 ACCCAAATCGTCTTCTCCGG 59.751 55.000 0.00 0.00 0.00 5.14
109 110 1.337823 ACACCCAAATCGTCTTCTCCG 60.338 52.381 0.00 0.00 0.00 4.63
110 111 2.347731 GACACCCAAATCGTCTTCTCC 58.652 52.381 0.00 0.00 0.00 3.71
111 112 2.347731 GGACACCCAAATCGTCTTCTC 58.652 52.381 0.00 0.00 0.00 2.87
112 113 1.337823 CGGACACCCAAATCGTCTTCT 60.338 52.381 0.00 0.00 0.00 2.85
113 114 1.076332 CGGACACCCAAATCGTCTTC 58.924 55.000 0.00 0.00 0.00 2.87
114 115 0.682852 TCGGACACCCAAATCGTCTT 59.317 50.000 0.00 0.00 0.00 3.01
115 116 0.037605 GTCGGACACCCAAATCGTCT 60.038 55.000 2.62 0.00 0.00 4.18
116 117 1.349259 CGTCGGACACCCAAATCGTC 61.349 60.000 9.10 0.00 0.00 4.20
117 118 1.373748 CGTCGGACACCCAAATCGT 60.374 57.895 9.10 0.00 0.00 3.73
118 119 0.459585 ATCGTCGGACACCCAAATCG 60.460 55.000 9.10 0.00 0.00 3.34
119 120 1.734163 AATCGTCGGACACCCAAATC 58.266 50.000 9.10 0.00 0.00 2.17
120 121 2.194201 AAATCGTCGGACACCCAAAT 57.806 45.000 9.10 0.00 0.00 2.32
121 122 2.613474 CCTAAATCGTCGGACACCCAAA 60.613 50.000 9.10 0.00 0.00 3.28
122 123 1.066716 CCTAAATCGTCGGACACCCAA 60.067 52.381 9.10 0.00 0.00 4.12
123 124 0.533491 CCTAAATCGTCGGACACCCA 59.467 55.000 9.10 0.00 0.00 4.51
124 125 0.179092 CCCTAAATCGTCGGACACCC 60.179 60.000 9.10 0.00 0.00 4.61
125 126 0.808847 GCCCTAAATCGTCGGACACC 60.809 60.000 9.10 0.00 0.00 4.16
126 127 0.808847 GGCCCTAAATCGTCGGACAC 60.809 60.000 9.10 0.00 0.00 3.67
127 128 0.974010 AGGCCCTAAATCGTCGGACA 60.974 55.000 9.10 0.00 0.00 4.02
128 129 0.249363 GAGGCCCTAAATCGTCGGAC 60.249 60.000 0.00 0.00 0.00 4.79
129 130 1.397390 GGAGGCCCTAAATCGTCGGA 61.397 60.000 0.00 0.00 0.00 4.55
130 131 1.069258 GGAGGCCCTAAATCGTCGG 59.931 63.158 0.00 0.00 0.00 4.79
131 132 0.249489 CAGGAGGCCCTAAATCGTCG 60.249 60.000 0.00 0.00 42.02 5.12
132 133 0.533085 GCAGGAGGCCCTAAATCGTC 60.533 60.000 0.00 0.00 42.02 4.20
133 134 1.271840 TGCAGGAGGCCCTAAATCGT 61.272 55.000 0.00 0.00 42.02 3.73
134 135 0.109342 ATGCAGGAGGCCCTAAATCG 59.891 55.000 0.00 0.00 42.02 3.34
135 136 1.879796 CGATGCAGGAGGCCCTAAATC 60.880 57.143 0.00 0.00 42.02 2.17
136 137 0.109342 CGATGCAGGAGGCCCTAAAT 59.891 55.000 0.00 0.00 42.02 1.40
137 138 1.526887 CGATGCAGGAGGCCCTAAA 59.473 57.895 0.00 0.00 42.02 1.85
138 139 2.443394 CCGATGCAGGAGGCCCTAA 61.443 63.158 0.00 0.00 42.02 2.69
139 140 2.844362 CCGATGCAGGAGGCCCTA 60.844 66.667 0.00 0.00 42.02 3.53
141 142 4.115199 AACCGATGCAGGAGGCCC 62.115 66.667 0.00 0.00 43.89 5.80
142 143 2.514824 GAACCGATGCAGGAGGCC 60.515 66.667 0.00 0.00 43.89 5.19
156 157 6.529477 GTCGTAGTAAACCACATAGAAGGAAC 59.471 42.308 0.00 0.00 0.00 3.62
202 203 2.851263 TGACGAGCTAAACCACCATT 57.149 45.000 0.00 0.00 0.00 3.16
212 213 1.414919 ACCAACAACCTTGACGAGCTA 59.585 47.619 0.00 0.00 0.00 3.32
217 218 0.303493 CACGACCAACAACCTTGACG 59.697 55.000 0.00 0.00 0.00 4.35
241 242 1.081641 TCGTTGGCGTCGTCTCTTC 60.082 57.895 0.00 0.00 39.49 2.87
243 244 2.254651 GTCGTTGGCGTCGTCTCT 59.745 61.111 0.00 0.00 39.49 3.10
247 248 3.547249 ATGTCGTCGTTGGCGTCGT 62.547 57.895 6.55 0.00 46.29 4.34
249 250 1.279527 TTCATGTCGTCGTTGGCGTC 61.280 55.000 0.00 0.00 39.49 5.19
250 251 0.876777 TTTCATGTCGTCGTTGGCGT 60.877 50.000 0.00 0.00 39.49 5.68
251 252 0.450482 GTTTCATGTCGTCGTTGGCG 60.450 55.000 0.00 0.00 39.92 5.69
252 253 0.584396 TGTTTCATGTCGTCGTTGGC 59.416 50.000 0.00 0.00 0.00 4.52
254 255 2.286125 TGCTTGTTTCATGTCGTCGTTG 60.286 45.455 0.00 0.00 0.00 4.10
256 257 1.577468 TGCTTGTTTCATGTCGTCGT 58.423 45.000 0.00 0.00 0.00 4.34
257 258 2.157474 TGATGCTTGTTTCATGTCGTCG 59.843 45.455 0.00 0.00 0.00 5.12
258 259 3.187227 AGTGATGCTTGTTTCATGTCGTC 59.813 43.478 0.00 0.00 0.00 4.20
259 260 3.141398 AGTGATGCTTGTTTCATGTCGT 58.859 40.909 0.00 0.00 0.00 4.34
260 261 3.722957 CGAGTGATGCTTGTTTCATGTCG 60.723 47.826 0.00 0.00 0.00 4.35
261 262 3.187227 ACGAGTGATGCTTGTTTCATGTC 59.813 43.478 0.00 0.00 38.67 3.06
262 263 3.058708 CACGAGTGATGCTTGTTTCATGT 60.059 43.478 0.00 0.00 39.76 3.21
263 264 3.058708 ACACGAGTGATGCTTGTTTCATG 60.059 43.478 10.50 0.00 39.76 3.07
264 265 3.141398 ACACGAGTGATGCTTGTTTCAT 58.859 40.909 10.50 0.00 39.76 2.57
265 266 2.560504 ACACGAGTGATGCTTGTTTCA 58.439 42.857 10.50 0.00 39.76 2.69
266 267 3.609103 AACACGAGTGATGCTTGTTTC 57.391 42.857 10.50 0.00 39.76 2.78
267 268 4.096382 AGAAAACACGAGTGATGCTTGTTT 59.904 37.500 10.50 0.00 39.76 2.83
268 269 3.627577 AGAAAACACGAGTGATGCTTGTT 59.372 39.130 10.50 0.00 39.76 2.83
269 270 3.206150 AGAAAACACGAGTGATGCTTGT 58.794 40.909 10.50 0.00 42.42 3.16
270 271 3.496130 AGAGAAAACACGAGTGATGCTTG 59.504 43.478 10.50 0.00 34.71 4.01
271 272 3.733337 AGAGAAAACACGAGTGATGCTT 58.267 40.909 10.50 0.00 0.00 3.91
272 273 3.393089 AGAGAAAACACGAGTGATGCT 57.607 42.857 10.50 2.39 0.00 3.79
273 274 5.805486 TGTATAGAGAAAACACGAGTGATGC 59.195 40.000 10.50 0.00 0.00 3.91
274 275 7.755373 TCTTGTATAGAGAAAACACGAGTGATG 59.245 37.037 10.50 0.00 0.00 3.07
275 276 7.827701 TCTTGTATAGAGAAAACACGAGTGAT 58.172 34.615 10.50 0.00 0.00 3.06
276 277 7.210718 TCTTGTATAGAGAAAACACGAGTGA 57.789 36.000 10.50 0.00 0.00 3.41
277 278 7.755373 TCATCTTGTATAGAGAAAACACGAGTG 59.245 37.037 1.13 1.13 36.02 3.51
278 279 7.827701 TCATCTTGTATAGAGAAAACACGAGT 58.172 34.615 0.00 0.00 36.02 4.18
279 280 8.184848 TCTCATCTTGTATAGAGAAAACACGAG 58.815 37.037 0.00 0.00 36.02 4.18
280 281 8.051901 TCTCATCTTGTATAGAGAAAACACGA 57.948 34.615 0.00 0.00 36.02 4.35
281 282 8.184848 TCTCTCATCTTGTATAGAGAAAACACG 58.815 37.037 0.00 0.00 41.05 4.49
282 283 9.515020 CTCTCTCATCTTGTATAGAGAAAACAC 57.485 37.037 0.00 0.00 42.81 3.32
283 284 9.249053 ACTCTCTCATCTTGTATAGAGAAAACA 57.751 33.333 0.00 0.00 42.81 2.83
284 285 9.515020 CACTCTCTCATCTTGTATAGAGAAAAC 57.485 37.037 0.00 0.00 42.81 2.43
285 286 9.467796 TCACTCTCTCATCTTGTATAGAGAAAA 57.532 33.333 0.00 0.00 42.81 2.29
286 287 9.639563 ATCACTCTCTCATCTTGTATAGAGAAA 57.360 33.333 0.00 0.00 42.81 2.52
287 288 9.283768 GATCACTCTCTCATCTTGTATAGAGAA 57.716 37.037 0.00 0.00 42.81 2.87
288 289 7.602265 CGATCACTCTCTCATCTTGTATAGAGA 59.398 40.741 0.00 0.00 41.58 3.10
289 290 7.602265 TCGATCACTCTCTCATCTTGTATAGAG 59.398 40.741 0.00 0.00 36.02 2.43
290 291 7.445945 TCGATCACTCTCTCATCTTGTATAGA 58.554 38.462 0.00 0.00 37.28 1.98
291 292 7.387673 ACTCGATCACTCTCTCATCTTGTATAG 59.612 40.741 0.00 0.00 0.00 1.31
292 293 7.220740 ACTCGATCACTCTCTCATCTTGTATA 58.779 38.462 0.00 0.00 0.00 1.47
293 294 6.061441 ACTCGATCACTCTCTCATCTTGTAT 58.939 40.000 0.00 0.00 0.00 2.29
294 295 5.432645 ACTCGATCACTCTCTCATCTTGTA 58.567 41.667 0.00 0.00 0.00 2.41
295 296 4.269183 ACTCGATCACTCTCTCATCTTGT 58.731 43.478 0.00 0.00 0.00 3.16
296 297 4.576053 AGACTCGATCACTCTCTCATCTTG 59.424 45.833 0.00 0.00 0.00 3.02
297 298 4.780815 AGACTCGATCACTCTCTCATCTT 58.219 43.478 0.00 0.00 0.00 2.40
298 299 4.380531 GAGACTCGATCACTCTCTCATCT 58.619 47.826 0.00 0.00 0.00 2.90
299 300 3.184379 CGAGACTCGATCACTCTCTCATC 59.816 52.174 20.25 0.00 43.74 2.92
300 301 3.130633 CGAGACTCGATCACTCTCTCAT 58.869 50.000 20.25 0.00 43.74 2.90
301 302 2.545731 CGAGACTCGATCACTCTCTCA 58.454 52.381 20.25 0.00 43.74 3.27
302 303 1.864711 CCGAGACTCGATCACTCTCTC 59.135 57.143 26.11 0.00 43.74 3.20
303 304 1.474320 CCCGAGACTCGATCACTCTCT 60.474 57.143 26.11 0.00 43.74 3.10
304 305 0.941542 CCCGAGACTCGATCACTCTC 59.058 60.000 26.11 0.00 43.74 3.20
305 306 0.464735 CCCCGAGACTCGATCACTCT 60.465 60.000 26.11 0.00 43.74 3.24
306 307 1.448922 CCCCCGAGACTCGATCACTC 61.449 65.000 26.11 0.00 43.74 3.51
307 308 1.454111 CCCCCGAGACTCGATCACT 60.454 63.158 26.11 0.00 43.74 3.41
308 309 1.448922 CTCCCCCGAGACTCGATCAC 61.449 65.000 26.11 0.00 43.74 3.06
309 310 1.152943 CTCCCCCGAGACTCGATCA 60.153 63.158 26.11 6.07 43.74 2.92
310 311 0.465824 TTCTCCCCCGAGACTCGATC 60.466 60.000 26.11 0.00 45.01 3.69
311 312 0.466555 CTTCTCCCCCGAGACTCGAT 60.467 60.000 26.11 0.00 45.01 3.59
312 313 1.077644 CTTCTCCCCCGAGACTCGA 60.078 63.158 26.11 5.11 45.01 4.04
313 314 2.776913 GCTTCTCCCCCGAGACTCG 61.777 68.421 18.08 18.08 45.01 4.18
314 315 1.258445 TTGCTTCTCCCCCGAGACTC 61.258 60.000 0.00 0.00 45.01 3.36
315 316 1.229209 TTGCTTCTCCCCCGAGACT 60.229 57.895 0.00 0.00 45.01 3.24
316 317 1.079057 GTTGCTTCTCCCCCGAGAC 60.079 63.158 0.00 0.00 45.01 3.36
317 318 2.646175 CGTTGCTTCTCCCCCGAGA 61.646 63.158 0.00 0.00 43.62 4.04
318 319 2.125512 CGTTGCTTCTCCCCCGAG 60.126 66.667 0.00 0.00 37.48 4.63
319 320 4.388499 GCGTTGCTTCTCCCCCGA 62.388 66.667 0.00 0.00 0.00 5.14
320 321 4.697756 TGCGTTGCTTCTCCCCCG 62.698 66.667 0.00 0.00 0.00 5.73
321 322 3.056328 GTGCGTTGCTTCTCCCCC 61.056 66.667 0.00 0.00 0.00 5.40
322 323 1.244019 ATTGTGCGTTGCTTCTCCCC 61.244 55.000 0.00 0.00 0.00 4.81
323 324 0.109597 CATTGTGCGTTGCTTCTCCC 60.110 55.000 0.00 0.00 0.00 4.30
324 325 0.874390 TCATTGTGCGTTGCTTCTCC 59.126 50.000 0.00 0.00 0.00 3.71
325 326 2.907910 ATCATTGTGCGTTGCTTCTC 57.092 45.000 0.00 0.00 0.00 2.87
326 327 4.002982 TCTAATCATTGTGCGTTGCTTCT 58.997 39.130 0.00 0.00 0.00 2.85
327 328 4.340894 TCTAATCATTGTGCGTTGCTTC 57.659 40.909 0.00 0.00 0.00 3.86
328 329 4.764679 TTCTAATCATTGTGCGTTGCTT 57.235 36.364 0.00 0.00 0.00 3.91
329 330 4.494690 CGATTCTAATCATTGTGCGTTGCT 60.495 41.667 3.76 0.00 35.11 3.91
330 331 3.720818 CGATTCTAATCATTGTGCGTTGC 59.279 43.478 3.76 0.00 35.11 4.17
331 332 5.142635 TCGATTCTAATCATTGTGCGTTG 57.857 39.130 3.76 0.00 35.11 4.10
332 333 5.794687 TTCGATTCTAATCATTGTGCGTT 57.205 34.783 3.76 0.00 35.11 4.84
333 334 5.277490 CCATTCGATTCTAATCATTGTGCGT 60.277 40.000 3.76 0.00 35.11 5.24
334 335 5.142265 CCATTCGATTCTAATCATTGTGCG 58.858 41.667 3.76 0.00 35.11 5.34
335 336 4.913924 GCCATTCGATTCTAATCATTGTGC 59.086 41.667 3.76 0.00 35.11 4.57
336 337 5.911280 GTGCCATTCGATTCTAATCATTGTG 59.089 40.000 3.76 0.00 35.11 3.33
337 338 5.589855 TGTGCCATTCGATTCTAATCATTGT 59.410 36.000 3.76 0.00 35.11 2.71
338 339 6.063640 TGTGCCATTCGATTCTAATCATTG 57.936 37.500 3.76 0.00 35.11 2.82
339 340 6.294342 CCATGTGCCATTCGATTCTAATCATT 60.294 38.462 3.76 0.00 35.11 2.57
340 341 5.182570 CCATGTGCCATTCGATTCTAATCAT 59.817 40.000 3.76 0.00 35.11 2.45
341 342 4.516321 CCATGTGCCATTCGATTCTAATCA 59.484 41.667 3.76 0.00 35.11 2.57
342 343 4.756642 TCCATGTGCCATTCGATTCTAATC 59.243 41.667 0.00 0.00 0.00 1.75
343 344 4.717877 TCCATGTGCCATTCGATTCTAAT 58.282 39.130 0.00 0.00 0.00 1.73
344 345 4.129380 CTCCATGTGCCATTCGATTCTAA 58.871 43.478 0.00 0.00 0.00 2.10
345 346 3.494924 CCTCCATGTGCCATTCGATTCTA 60.495 47.826 0.00 0.00 0.00 2.10
346 347 2.569059 CTCCATGTGCCATTCGATTCT 58.431 47.619 0.00 0.00 0.00 2.40
347 348 1.605710 CCTCCATGTGCCATTCGATTC 59.394 52.381 0.00 0.00 0.00 2.52
348 349 1.212688 TCCTCCATGTGCCATTCGATT 59.787 47.619 0.00 0.00 0.00 3.34
349 350 0.839277 TCCTCCATGTGCCATTCGAT 59.161 50.000 0.00 0.00 0.00 3.59
350 351 0.178767 CTCCTCCATGTGCCATTCGA 59.821 55.000 0.00 0.00 0.00 3.71
351 352 0.178767 TCTCCTCCATGTGCCATTCG 59.821 55.000 0.00 0.00 0.00 3.34
352 353 2.295885 CTTCTCCTCCATGTGCCATTC 58.704 52.381 0.00 0.00 0.00 2.67
353 354 1.684248 GCTTCTCCTCCATGTGCCATT 60.684 52.381 0.00 0.00 0.00 3.16
354 355 0.106819 GCTTCTCCTCCATGTGCCAT 60.107 55.000 0.00 0.00 0.00 4.40
355 356 1.203441 AGCTTCTCCTCCATGTGCCA 61.203 55.000 0.00 0.00 0.00 4.92
356 357 0.747283 CAGCTTCTCCTCCATGTGCC 60.747 60.000 0.00 0.00 0.00 5.01
357 358 0.251354 TCAGCTTCTCCTCCATGTGC 59.749 55.000 0.00 0.00 0.00 4.57
358 359 1.134461 CCTCAGCTTCTCCTCCATGTG 60.134 57.143 0.00 0.00 0.00 3.21
359 360 1.202330 CCTCAGCTTCTCCTCCATGT 58.798 55.000 0.00 0.00 0.00 3.21
360 361 1.413445 CTCCTCAGCTTCTCCTCCATG 59.587 57.143 0.00 0.00 0.00 3.66
361 362 1.692121 CCTCCTCAGCTTCTCCTCCAT 60.692 57.143 0.00 0.00 0.00 3.41
362 363 0.325110 CCTCCTCAGCTTCTCCTCCA 60.325 60.000 0.00 0.00 0.00 3.86
363 364 1.048160 CCCTCCTCAGCTTCTCCTCC 61.048 65.000 0.00 0.00 0.00 4.30
364 365 1.685355 GCCCTCCTCAGCTTCTCCTC 61.685 65.000 0.00 0.00 0.00 3.71
371 372 1.112315 CGACATAGCCCTCCTCAGCT 61.112 60.000 0.00 0.00 43.20 4.24
413 414 4.864334 GGAGCACATCAGGCCCGG 62.864 72.222 0.00 0.00 0.00 5.73
421 422 1.858091 AATCATCGTCGGAGCACATC 58.142 50.000 0.00 0.00 0.00 3.06
456 457 0.248907 GCACCTAGCGCTACGATTCA 60.249 55.000 14.45 0.00 0.00 2.57
477 478 2.287194 CCCTCCCCATTCCACCCT 60.287 66.667 0.00 0.00 0.00 4.34
493 494 1.760875 TGATCGCTAGGACACCCCC 60.761 63.158 0.00 0.00 34.66 5.40
494 495 1.442148 GTGATCGCTAGGACACCCC 59.558 63.158 0.00 0.00 0.00 4.95
495 496 1.065928 CGTGATCGCTAGGACACCC 59.934 63.158 4.48 0.00 0.00 4.61
559 600 4.283722 TCTCACCCTTCTCTTTTACCTCAC 59.716 45.833 0.00 0.00 0.00 3.51
567 613 2.234908 CGTCCATCTCACCCTTCTCTTT 59.765 50.000 0.00 0.00 0.00 2.52
575 621 1.875576 GCATCATCGTCCATCTCACCC 60.876 57.143 0.00 0.00 0.00 4.61
595 641 3.713288 TGATTTTGACTATACCTCGCCG 58.287 45.455 0.00 0.00 0.00 6.46
648 696 5.845103 TGAATGCTTTTGTGTTGACATGAT 58.155 33.333 0.00 0.00 30.13 2.45
738 812 7.818997 ACCTCGACAGTCTATACATAAATGA 57.181 36.000 0.00 0.00 0.00 2.57
852 926 1.918957 AGTAGCTCAGGAATTGCCCTT 59.081 47.619 0.00 0.00 37.37 3.95
853 927 1.488393 GAGTAGCTCAGGAATTGCCCT 59.512 52.381 0.00 0.00 37.37 5.19
854 928 1.808133 CGAGTAGCTCAGGAATTGCCC 60.808 57.143 0.00 0.00 37.37 5.36
855 929 1.576356 CGAGTAGCTCAGGAATTGCC 58.424 55.000 0.00 0.00 0.00 4.52
856 930 0.933796 GCGAGTAGCTCAGGAATTGC 59.066 55.000 0.00 0.00 44.04 3.56
876 950 1.878656 AAAGGAGAGAGGTGACGCCG 61.879 60.000 0.00 0.00 43.70 6.46
878 952 0.456995 CGAAAGGAGAGAGGTGACGC 60.457 60.000 0.00 0.00 0.00 5.19
879 953 1.135632 GTCGAAAGGAGAGAGGTGACG 60.136 57.143 0.00 0.00 0.00 4.35
882 956 0.533032 GGGTCGAAAGGAGAGAGGTG 59.467 60.000 0.00 0.00 0.00 4.00
885 959 0.889306 AACGGGTCGAAAGGAGAGAG 59.111 55.000 0.00 0.00 0.00 3.20
916 990 2.371658 AAGGAATGGCAGAATAGGGC 57.628 50.000 0.00 0.00 0.00 5.19
921 995 2.358195 GGTGGGTAAGGAATGGCAGAAT 60.358 50.000 0.00 0.00 0.00 2.40
930 1004 1.980036 GTGGTACTGGTGGGTAAGGAA 59.020 52.381 0.00 0.00 0.00 3.36
937 1011 2.869503 GATGGCGTGGTACTGGTGGG 62.870 65.000 0.00 0.00 0.00 4.61
938 1012 1.449601 GATGGCGTGGTACTGGTGG 60.450 63.158 0.00 0.00 0.00 4.61
939 1013 0.460284 GAGATGGCGTGGTACTGGTG 60.460 60.000 0.00 0.00 0.00 4.17
940 1014 1.898154 GAGATGGCGTGGTACTGGT 59.102 57.895 0.00 0.00 0.00 4.00
941 1015 1.226974 CGAGATGGCGTGGTACTGG 60.227 63.158 0.00 0.00 0.00 4.00
942 1016 1.878522 GCGAGATGGCGTGGTACTG 60.879 63.158 0.00 0.00 0.00 2.74
943 1017 2.494918 GCGAGATGGCGTGGTACT 59.505 61.111 0.00 0.00 0.00 2.73
944 1018 2.585247 GGCGAGATGGCGTGGTAC 60.585 66.667 0.00 0.00 0.00 3.34
953 1027 3.190849 CTGCGTGGTGGCGAGATG 61.191 66.667 0.00 0.00 35.06 2.90
1131 3764 3.147595 AGAGCCGTGAGCCGCATA 61.148 61.111 0.00 0.00 45.47 3.14
1396 4029 1.479709 CTCTCAGACCCGGACTTGAT 58.520 55.000 0.73 0.00 0.00 2.57
1670 4303 4.764823 TCTGAACAAATAACCAAATCGCCT 59.235 37.500 0.00 0.00 0.00 5.52
1671 4304 5.054390 TCTGAACAAATAACCAAATCGCC 57.946 39.130 0.00 0.00 0.00 5.54
1752 4385 0.178068 ACGCTCCCATCTTTACGCAT 59.822 50.000 0.00 0.00 0.00 4.73
1804 4437 3.055675 TCGGTATCAAACCCACTTCGAAT 60.056 43.478 0.00 0.00 46.62 3.34
1812 4445 3.495434 AACTTGTCGGTATCAAACCCA 57.505 42.857 0.00 0.00 46.62 4.51
1865 4498 1.741706 CATCACCCACAGCATCAGAAC 59.258 52.381 0.00 0.00 0.00 3.01
1914 4547 0.541392 TGGATGTGATCAAGGACGGG 59.459 55.000 0.00 0.00 0.00 5.28
1965 4598 0.321671 TCTTTGCTTCCTCCGTCCTG 59.678 55.000 0.00 0.00 0.00 3.86
1993 4626 3.599730 ATCGTGCTCTGACATCTTCAA 57.400 42.857 0.00 0.00 32.21 2.69
1994 4627 3.515630 GAATCGTGCTCTGACATCTTCA 58.484 45.455 0.00 0.00 0.00 3.02
2002 4635 0.108804 GAACCCGAATCGTGCTCTGA 60.109 55.000 0.82 0.00 0.00 3.27
2010 4643 2.534349 CAGATTGTACGAACCCGAATCG 59.466 50.000 0.00 0.00 45.47 3.34
2140 4773 3.519510 TCCTCCAACTTCCCATTCTGTAG 59.480 47.826 0.00 0.00 0.00 2.74
2258 4891 7.119846 ACATGACCACAAATAGTTTTAGAGCTC 59.880 37.037 5.27 5.27 0.00 4.09
2430 5063 7.336679 CCACATTTCAAGTACATATCCACAAGA 59.663 37.037 0.00 0.00 0.00 3.02
2464 5097 2.813474 TGCGCTACGTGCATCACC 60.813 61.111 9.73 0.00 44.36 4.02
2566 5199 6.650120 TCAACATCCTCCCAAATTCTACTAC 58.350 40.000 0.00 0.00 0.00 2.73
2694 5327 4.645588 ACAGTTGGTACTAGTCCATAGCTC 59.354 45.833 12.87 4.87 34.56 4.09
2813 5446 2.368329 GGGCTCCCCATACCACCT 60.368 66.667 0.00 0.00 44.65 4.00
2860 5493 3.341823 CAACTTTCTCACCCATCTCCAG 58.658 50.000 0.00 0.00 0.00 3.86
2886 5519 0.469070 TGCCCATGCAAAGCAACTTT 59.531 45.000 6.23 0.00 46.66 2.66
3334 5968 8.803201 TTCTTCATTAGCAGATAAGATACGTG 57.197 34.615 0.00 0.00 0.00 4.49
3428 6063 9.639601 AAATTAGAAAGGTTTAAGCATACAAGC 57.360 29.630 0.00 0.00 0.00 4.01
3565 6235 9.856162 TGGTTTTATAGGGTATGGTAAGAAATC 57.144 33.333 0.00 0.00 0.00 2.17
3596 6266 4.517453 AGTTTCCGATCGAAATTGTTTCCA 59.483 37.500 18.66 0.00 42.38 3.53
3637 6307 6.586344 TCAGATCTCATTGTTACCTCCAATC 58.414 40.000 0.00 0.00 30.28 2.67
3646 6316 5.411831 AGTGTGCTCAGATCTCATTGTTA 57.588 39.130 0.00 0.00 0.00 2.41
3669 6339 1.407575 CGGAGTGCTAGGAGACTGAGA 60.408 57.143 0.00 0.00 43.88 3.27
3720 8684 0.108329 CTCACGTCATACCCACCCAC 60.108 60.000 0.00 0.00 0.00 4.61
3987 8966 2.964209 TGTAGGCTCCTCTATTCCCAG 58.036 52.381 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.