Multiple sequence alignment - TraesCS2D01G275300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G275300 chr2D 100.000 5884 0 0 1 5884 344974249 344968366 0.000000e+00 10866.0
1 TraesCS2D01G275300 chr2D 97.674 43 0 1 3457 3499 344970761 344970720 8.180000e-09 73.1
2 TraesCS2D01G275300 chr2D 97.674 43 0 1 3489 3530 344970793 344970751 8.180000e-09 73.1
3 TraesCS2D01G275300 chr2D 94.595 37 1 1 2358 2394 639979020 639978985 8.240000e-04 56.5
4 TraesCS2D01G275300 chr2A 91.118 2004 93 38 1 1947 456500817 456498842 0.000000e+00 2636.0
5 TraesCS2D01G275300 chr2A 90.386 1893 108 24 4042 5884 456496638 456494770 0.000000e+00 2420.0
6 TraesCS2D01G275300 chr2A 91.403 663 46 8 2381 3033 456498275 456497614 0.000000e+00 898.0
7 TraesCS2D01G275300 chr2A 90.933 375 18 2 1955 2318 456498641 456498272 1.910000e-134 490.0
8 TraesCS2D01G275300 chr2A 89.770 391 25 6 3659 4040 456497108 456496724 2.460000e-133 486.0
9 TraesCS2D01G275300 chr2A 85.751 386 39 9 3120 3499 456497568 456497193 1.540000e-105 394.0
10 TraesCS2D01G275300 chr2A 79.310 174 28 7 5495 5662 111899791 111899962 1.340000e-21 115.0
11 TraesCS2D01G275300 chr2A 96.875 32 1 0 2358 2389 261173700 261173669 3.000000e-03 54.7
12 TraesCS2D01G275300 chr2B 91.993 1636 79 18 3659 5258 410182908 410181289 0.000000e+00 2248.0
13 TraesCS2D01G275300 chr2B 95.681 1042 39 5 909 1946 410185678 410184639 0.000000e+00 1670.0
14 TraesCS2D01G275300 chr2B 85.714 924 77 21 2 885 410195568 410194660 0.000000e+00 924.0
15 TraesCS2D01G275300 chr2B 91.252 663 45 7 2381 3033 410184072 410183413 0.000000e+00 891.0
16 TraesCS2D01G275300 chr2B 90.400 375 20 2 1955 2318 410184438 410184069 4.120000e-131 479.0
17 TraesCS2D01G275300 chr2B 86.269 386 34 9 3120 3499 410183367 410182995 9.180000e-108 401.0
18 TraesCS2D01G275300 chr2B 85.294 204 26 2 5684 5884 410180880 410180678 2.150000e-49 207.0
19 TraesCS2D01G275300 chr2B 77.532 316 60 9 5556 5862 465833206 465833519 4.680000e-41 180.0
20 TraesCS2D01G275300 chr2B 89.720 107 9 2 3489 3594 410183036 410182931 1.030000e-27 135.0
21 TraesCS2D01G275300 chr2B 75.375 333 50 20 5525 5828 736241136 736240807 1.330000e-26 132.0
22 TraesCS2D01G275300 chr2B 100.000 28 0 0 2362 2389 135357576 135357603 1.100000e-02 52.8
23 TraesCS2D01G275300 chr4D 82.843 408 50 12 1 389 54751565 54751159 1.210000e-91 348.0
24 TraesCS2D01G275300 chr4D 76.364 275 36 12 5638 5884 220320234 220319961 2.880000e-23 121.0
25 TraesCS2D01G275300 chr5D 88.448 277 25 6 114 389 324981859 324981589 1.580000e-85 327.0
26 TraesCS2D01G275300 chr5D 95.349 43 2 0 4672 4714 302333585 302333627 1.060000e-07 69.4
27 TraesCS2D01G275300 chr5D 93.478 46 3 0 4669 4714 467775149 467775194 1.060000e-07 69.4
28 TraesCS2D01G275300 chr5D 80.723 83 9 4 2314 2389 402773372 402773454 2.290000e-04 58.4
29 TraesCS2D01G275300 chr5A 88.930 271 22 4 114 382 681407253 681406989 1.580000e-85 327.0
30 TraesCS2D01G275300 chr5A 94.000 50 3 0 4665 4714 707705968 707706017 6.320000e-10 76.8
31 TraesCS2D01G275300 chr5A 95.455 44 2 0 4668 4711 6432471 6432514 2.940000e-08 71.3
32 TraesCS2D01G275300 chr1B 81.951 410 53 12 1 391 471523134 471523541 1.580000e-85 327.0
33 TraesCS2D01G275300 chr1B 80.929 409 57 12 5491 5884 323293873 323293471 2.660000e-78 303.0
34 TraesCS2D01G275300 chr1B 100.000 31 0 0 2358 2388 8813597 8813567 2.290000e-04 58.4
35 TraesCS2D01G275300 chrUn 82.663 398 37 12 11 383 21283795 21284185 2.050000e-84 324.0
36 TraesCS2D01G275300 chr4B 81.884 414 43 14 1 389 519036147 519035741 2.650000e-83 320.0
37 TraesCS2D01G275300 chr4B 84.932 73 7 3 2313 2385 39764745 39764677 2.940000e-08 71.3
38 TraesCS2D01G275300 chr1D 81.463 410 53 12 5491 5884 223743112 223742710 1.230000e-81 315.0
39 TraesCS2D01G275300 chr3D 80.760 421 54 13 5491 5884 319854761 319855181 2.660000e-78 303.0
40 TraesCS2D01G275300 chr3D 86.861 274 29 4 117 389 525954769 525954502 3.450000e-77 300.0
41 TraesCS2D01G275300 chr3D 81.215 181 25 6 5491 5666 480836470 480836294 2.860000e-28 137.0
42 TraesCS2D01G275300 chr3D 95.349 43 2 0 4672 4714 11578650 11578608 1.060000e-07 69.4
43 TraesCS2D01G275300 chr3D 89.583 48 4 1 2358 2405 388797486 388797440 6.370000e-05 60.2
44 TraesCS2D01G275300 chr7B 81.267 363 48 14 5521 5865 688139219 688139579 5.810000e-70 276.0
45 TraesCS2D01G275300 chr7B 78.378 370 54 12 5533 5884 313429623 313429262 3.570000e-52 217.0
46 TraesCS2D01G275300 chr1A 81.098 328 43 9 5568 5877 513533001 513532675 1.640000e-60 244.0
47 TraesCS2D01G275300 chr6D 82.386 176 26 4 5491 5661 393927457 393927632 1.320000e-31 148.0
48 TraesCS2D01G275300 chr6D 78.613 173 32 4 5493 5661 387882277 387882106 6.230000e-20 110.0
49 TraesCS2D01G275300 chr6D 97.674 43 1 0 4672 4714 132661087 132661129 2.270000e-09 75.0
50 TraesCS2D01G275300 chr3B 80.347 173 30 3 5493 5661 508259283 508259455 1.720000e-25 128.0
51 TraesCS2D01G275300 chr3B 77.957 186 36 4 5479 5659 254492487 254492672 1.730000e-20 111.0
52 TraesCS2D01G275300 chr5B 82.308 130 18 3 5536 5661 571979227 571979355 2.240000e-19 108.0
53 TraesCS2D01G275300 chr7D 77.249 189 38 3 5479 5662 423334473 423334285 8.060000e-19 106.0
54 TraesCS2D01G275300 chr7A 90.000 70 7 0 2316 2385 9329306 9329375 2.260000e-14 91.6
55 TraesCS2D01G275300 chr6B 95.455 44 1 1 4672 4714 705796575 705796532 1.060000e-07 69.4
56 TraesCS2D01G275300 chr4A 100.000 30 0 0 2358 2387 200089223 200089252 8.240000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G275300 chr2D 344968366 344974249 5883 True 3670.733333 10866 98.449333 1 5884 3 chr2D.!!$R2 5883
1 TraesCS2D01G275300 chr2A 456494770 456500817 6047 True 1220.666667 2636 89.893500 1 5884 6 chr2A.!!$R2 5883
2 TraesCS2D01G275300 chr2B 410194660 410195568 908 True 924.000000 924 85.714000 2 885 1 chr2B.!!$R1 883
3 TraesCS2D01G275300 chr2B 410180678 410185678 5000 True 861.571429 2248 90.087000 909 5884 7 chr2B.!!$R3 4975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 652 0.535328 TTCGATCGGTTTGGCCACAA 60.535 50.0 16.41 0.00 36.97 3.33 F
1990 2246 0.607489 AGTCGCTGCATTTTCCTGCT 60.607 50.0 0.00 0.00 42.75 4.24 F
2387 2654 0.033405 TGGGACGGAGGGAGTAGAAG 60.033 60.0 0.00 0.00 0.00 2.85 F
3500 3780 0.097674 GCATAGCAAACTGTGGCTCG 59.902 55.0 10.07 5.44 41.41 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2368 2635 0.033405 CTTCTACTCCCTCCGTCCCA 60.033 60.0 0.0 0.0 0.00 4.37 R
3510 3790 0.038744 AGCCACAGTTTGCTATGCCT 59.961 50.0 0.0 0.0 35.69 4.75 R
3747 4028 0.105964 TCCCCTTCGACAACACACTG 59.894 55.0 0.0 0.0 0.00 3.66 R
5479 5953 1.318576 GGGTTTGGGACACTTGACTG 58.681 55.0 0.0 0.0 39.29 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 2.094545 GCTCCAAGCGACAAAATCCAAT 60.095 45.455 0.00 0.00 0.00 3.16
100 101 2.669781 CCAATATGTCATGTTGGGGCT 58.330 47.619 26.07 0.00 44.82 5.19
153 176 8.379457 ACTAGATTTTCGTCCCAATTATTAGC 57.621 34.615 0.00 0.00 0.00 3.09
157 180 4.868450 TTCGTCCCAATTATTAGCAACG 57.132 40.909 0.00 0.00 0.00 4.10
158 181 3.199677 TCGTCCCAATTATTAGCAACGG 58.800 45.455 0.00 0.00 0.00 4.44
159 182 3.118702 TCGTCCCAATTATTAGCAACGGA 60.119 43.478 0.00 0.00 0.00 4.69
219 242 7.989947 AATTACTCCCTCTAGGTGTGATTAA 57.010 36.000 3.08 0.00 43.00 1.40
224 247 7.699878 ACTCCCTCTAGGTGTGATTAATTTTT 58.300 34.615 0.00 0.00 40.89 1.94
295 320 4.134563 ACCATTTCCAAGACGCCATATAC 58.865 43.478 0.00 0.00 0.00 1.47
308 333 6.995686 AGACGCCATATACAACCATGATTTAA 59.004 34.615 0.00 0.00 0.00 1.52
321 346 6.953101 ACCATGATTTAAACAATTAACCCCC 58.047 36.000 0.00 0.00 30.86 5.40
322 347 6.502158 ACCATGATTTAAACAATTAACCCCCA 59.498 34.615 0.00 0.00 30.86 4.96
357 382 4.105057 TGCCAAGTAAAAGAGGAACCCTTA 59.895 41.667 0.00 0.00 31.76 2.69
378 403 9.252962 CCCTTATTTAGCTTTGCATTCAATAAG 57.747 33.333 0.00 1.39 34.57 1.73
502 527 2.370189 AGTAGTTGCTGCCTTTGAGAGT 59.630 45.455 0.00 0.00 0.00 3.24
507 532 4.276926 AGTTGCTGCCTTTGAGAGTTTAAG 59.723 41.667 0.00 0.00 0.00 1.85
577 609 1.665442 GCCAAGCACGACCCATTTT 59.335 52.632 0.00 0.00 0.00 1.82
620 652 0.535328 TTCGATCGGTTTGGCCACAA 60.535 50.000 16.41 0.00 36.97 3.33
630 662 3.877508 GGTTTGGCCACAACTATAGCTAG 59.122 47.826 22.01 0.00 36.06 3.42
631 663 4.383770 GGTTTGGCCACAACTATAGCTAGA 60.384 45.833 22.01 0.00 36.06 2.43
644 676 7.114866 ACTATAGCTAGAGGGAAAGTTTCAC 57.885 40.000 19.13 13.85 0.00 3.18
670 702 2.410575 ACCGCCCCTTATATGTTACCA 58.589 47.619 0.00 0.00 0.00 3.25
679 711 4.986659 CCTTATATGTTACCACAGTACCGC 59.013 45.833 0.00 0.00 35.94 5.68
706 742 1.303309 GCCGTTGGATTGGATCTCAG 58.697 55.000 0.00 0.00 0.00 3.35
726 772 2.569404 AGTCTGAGAAGTTGATGGACCC 59.431 50.000 0.00 0.00 0.00 4.46
727 773 2.303022 GTCTGAGAAGTTGATGGACCCA 59.697 50.000 0.00 0.00 0.00 4.51
729 775 2.304180 CTGAGAAGTTGATGGACCCACT 59.696 50.000 0.00 0.00 0.00 4.00
732 778 1.002087 GAAGTTGATGGACCCACTCGT 59.998 52.381 0.00 0.00 0.00 4.18
749 795 7.081976 CCCACTCGTAATTTTAAAACTCTTGG 58.918 38.462 1.97 4.21 0.00 3.61
766 813 5.068987 ACTCTTGGATAGCTTTTGTGCAAAA 59.931 36.000 9.37 9.37 37.90 2.44
786 833 6.543831 GCAAAATATTCAAGAGCTCCTAGGAA 59.456 38.462 13.77 9.56 0.00 3.36
789 836 1.475403 TCAAGAGCTCCTAGGAACCG 58.525 55.000 13.77 2.22 0.00 4.44
797 844 2.108168 CTCCTAGGAACCGTTGGATCA 58.892 52.381 13.77 0.00 0.00 2.92
799 846 2.108168 CCTAGGAACCGTTGGATCAGA 58.892 52.381 1.05 0.00 0.00 3.27
800 847 2.700897 CCTAGGAACCGTTGGATCAGAT 59.299 50.000 1.05 0.00 0.00 2.90
801 848 2.990066 AGGAACCGTTGGATCAGATC 57.010 50.000 1.18 1.18 0.00 2.75
858 910 0.681887 TATCACGTGAGCCTCGGGAA 60.682 55.000 24.41 0.00 43.79 3.97
886 940 2.134789 ATTCACCAAGCTGTGATCCC 57.865 50.000 7.64 0.00 44.27 3.85
887 941 1.067295 TTCACCAAGCTGTGATCCCT 58.933 50.000 7.64 0.00 44.27 4.20
892 946 3.826157 CACCAAGCTGTGATCCCTAAAAA 59.174 43.478 0.00 0.00 38.55 1.94
915 975 5.874895 AGAAATACTGCCCGTAAAGAAAC 57.125 39.130 0.00 0.00 0.00 2.78
964 1025 3.228759 GGCCTACCGCGTCCCATA 61.229 66.667 4.92 0.00 38.94 2.74
965 1026 2.028631 GCCTACCGCGTCCCATAC 59.971 66.667 4.92 0.00 0.00 2.39
1086 1150 1.951510 CAAGCGGAAGAAGCAGCAA 59.048 52.632 0.00 0.00 37.01 3.91
1369 1433 1.800586 CATTCAGACGAACCACTGTGG 59.199 52.381 24.80 24.80 45.02 4.17
1430 1494 2.059541 GTCTCGCTGTAAGTGTTGGAC 58.940 52.381 0.00 0.00 46.69 4.02
1460 1524 2.203209 ATTTCCGGATCCGCTGCC 60.203 61.111 29.12 0.00 38.24 4.85
1598 1662 1.671742 GAAGCTCGTTGAGGGGTCA 59.328 57.895 0.00 0.00 0.00 4.02
1870 1934 3.506398 ACATTTGGTTTCTAGGGGGTTG 58.494 45.455 0.00 0.00 0.00 3.77
1946 2010 1.597461 GAGGAGCAGGTACGCCTTT 59.403 57.895 0.00 0.00 44.18 3.11
1947 2011 0.822164 GAGGAGCAGGTACGCCTTTA 59.178 55.000 0.00 0.00 44.18 1.85
1948 2012 1.413077 GAGGAGCAGGTACGCCTTTAT 59.587 52.381 0.00 0.00 44.18 1.40
1949 2013 1.139058 AGGAGCAGGTACGCCTTTATG 59.861 52.381 0.00 0.00 44.18 1.90
1950 2014 1.138266 GGAGCAGGTACGCCTTTATGA 59.862 52.381 0.00 0.00 44.18 2.15
1951 2015 2.202566 GAGCAGGTACGCCTTTATGAC 58.797 52.381 0.00 0.00 44.18 3.06
1952 2016 1.831736 AGCAGGTACGCCTTTATGACT 59.168 47.619 0.00 0.00 44.18 3.41
1953 2017 2.159085 AGCAGGTACGCCTTTATGACTC 60.159 50.000 0.00 0.00 44.18 3.36
1990 2246 0.607489 AGTCGCTGCATTTTCCTGCT 60.607 50.000 0.00 0.00 42.75 4.24
1994 2250 0.886563 GCTGCATTTTCCTGCTCTGT 59.113 50.000 0.00 0.00 42.75 3.41
2022 2278 3.383761 GACTCAAAACCATTGGTTGCTG 58.616 45.455 21.49 19.73 46.20 4.41
2031 2287 2.496871 CCATTGGTTGCTGCCTTATTGA 59.503 45.455 0.00 0.00 0.00 2.57
2065 2321 4.677584 TGTTTGCCTGTAATGTTCACAAC 58.322 39.130 0.00 0.00 0.00 3.32
2066 2322 4.158579 TGTTTGCCTGTAATGTTCACAACA 59.841 37.500 0.00 0.00 46.94 3.33
2067 2323 3.980646 TGCCTGTAATGTTCACAACAC 57.019 42.857 0.00 0.00 45.50 3.32
2068 2324 3.282885 TGCCTGTAATGTTCACAACACA 58.717 40.909 0.00 0.00 45.50 3.72
2069 2325 3.696548 TGCCTGTAATGTTCACAACACAA 59.303 39.130 0.00 0.00 45.50 3.33
2117 2373 4.128925 TCTGCTACAAATGCTCTACCTG 57.871 45.455 0.00 0.00 0.00 4.00
2144 2400 6.633500 TTGGTACCTTGATGTTGAAAGAAG 57.367 37.500 14.36 0.00 0.00 2.85
2162 2429 6.544038 AAGAAGCCACAACATTATTTTTGC 57.456 33.333 0.00 0.00 0.00 3.68
2182 2449 2.064762 CGATATCTGCAACCTAGCTGC 58.935 52.381 0.00 7.84 40.35 5.25
2218 2485 3.198068 CCTCTGAACCATGGTCATTACG 58.802 50.000 20.07 5.50 0.00 3.18
2227 2494 3.990469 CCATGGTCATTACGCTATCTGAC 59.010 47.826 2.57 0.00 37.79 3.51
2241 2508 2.594303 TGACGGGTGCTTTGCCAG 60.594 61.111 0.00 0.00 0.00 4.85
2261 2528 5.335976 GCCAGTGTTCTAATTCTTTTGGAGG 60.336 44.000 0.00 0.00 0.00 4.30
2317 2584 2.151202 GTAGCACAAGCCAGCAAAGTA 58.849 47.619 0.00 0.00 43.56 2.24
2318 2585 0.954452 AGCACAAGCCAGCAAAGTAC 59.046 50.000 0.00 0.00 43.56 2.73
2319 2586 0.954452 GCACAAGCCAGCAAAGTACT 59.046 50.000 0.00 0.00 33.58 2.73
2320 2587 1.068954 GCACAAGCCAGCAAAGTACTC 60.069 52.381 0.00 0.00 33.58 2.59
2321 2588 1.537202 CACAAGCCAGCAAAGTACTCC 59.463 52.381 0.00 0.00 0.00 3.85
2322 2589 1.168714 CAAGCCAGCAAAGTACTCCC 58.831 55.000 0.00 0.00 0.00 4.30
2323 2590 1.068121 AAGCCAGCAAAGTACTCCCT 58.932 50.000 0.00 0.00 0.00 4.20
2324 2591 0.615850 AGCCAGCAAAGTACTCCCTC 59.384 55.000 0.00 0.00 0.00 4.30
2325 2592 0.615850 GCCAGCAAAGTACTCCCTCT 59.384 55.000 0.00 0.00 0.00 3.69
2326 2593 1.677217 GCCAGCAAAGTACTCCCTCTG 60.677 57.143 0.00 1.87 0.00 3.35
2327 2594 1.625818 CCAGCAAAGTACTCCCTCTGT 59.374 52.381 0.00 0.00 0.00 3.41
2328 2595 2.354203 CCAGCAAAGTACTCCCTCTGTC 60.354 54.545 0.00 0.00 0.00 3.51
2329 2596 1.903183 AGCAAAGTACTCCCTCTGTCC 59.097 52.381 0.00 0.00 0.00 4.02
2330 2597 1.066071 GCAAAGTACTCCCTCTGTCCC 60.066 57.143 0.00 0.00 0.00 4.46
2331 2598 2.257207 CAAAGTACTCCCTCTGTCCCA 58.743 52.381 0.00 0.00 0.00 4.37
2332 2599 1.939980 AAGTACTCCCTCTGTCCCAC 58.060 55.000 0.00 0.00 0.00 4.61
2333 2600 0.784495 AGTACTCCCTCTGTCCCACA 59.216 55.000 0.00 0.00 0.00 4.17
2334 2601 1.149288 AGTACTCCCTCTGTCCCACAA 59.851 52.381 0.00 0.00 0.00 3.33
2335 2602 2.188817 GTACTCCCTCTGTCCCACAAT 58.811 52.381 0.00 0.00 0.00 2.71
2336 2603 0.987294 ACTCCCTCTGTCCCACAATG 59.013 55.000 0.00 0.00 0.00 2.82
2337 2604 0.987294 CTCCCTCTGTCCCACAATGT 59.013 55.000 0.00 0.00 0.00 2.71
2338 2605 2.187958 CTCCCTCTGTCCCACAATGTA 58.812 52.381 0.00 0.00 0.00 2.29
2339 2606 2.169352 CTCCCTCTGTCCCACAATGTAG 59.831 54.545 0.00 0.00 0.00 2.74
2340 2607 1.210478 CCCTCTGTCCCACAATGTAGG 59.790 57.143 0.00 0.00 0.00 3.18
2341 2608 2.187958 CCTCTGTCCCACAATGTAGGA 58.812 52.381 0.00 0.00 0.00 2.94
2345 2612 2.467566 GTCCCACAATGTAGGACGTT 57.532 50.000 14.70 0.00 40.65 3.99
2346 2613 3.598019 GTCCCACAATGTAGGACGTTA 57.402 47.619 14.70 0.00 40.65 3.18
2347 2614 4.133013 GTCCCACAATGTAGGACGTTAT 57.867 45.455 14.70 0.00 40.65 1.89
2348 2615 4.510571 GTCCCACAATGTAGGACGTTATT 58.489 43.478 14.70 0.00 40.65 1.40
2349 2616 4.939439 GTCCCACAATGTAGGACGTTATTT 59.061 41.667 14.70 0.00 40.65 1.40
2350 2617 4.938832 TCCCACAATGTAGGACGTTATTTG 59.061 41.667 0.00 0.00 0.00 2.32
2351 2618 4.938832 CCCACAATGTAGGACGTTATTTGA 59.061 41.667 0.00 0.00 0.00 2.69
2352 2619 5.163794 CCCACAATGTAGGACGTTATTTGAC 60.164 44.000 0.00 0.00 0.00 3.18
2353 2620 5.410132 CCACAATGTAGGACGTTATTTGACA 59.590 40.000 0.00 0.00 0.00 3.58
2354 2621 6.304126 CACAATGTAGGACGTTATTTGACAC 58.696 40.000 0.00 0.00 0.00 3.67
2355 2622 6.147164 CACAATGTAGGACGTTATTTGACACT 59.853 38.462 0.00 0.00 0.00 3.55
2356 2623 7.329962 CACAATGTAGGACGTTATTTGACACTA 59.670 37.037 0.00 0.00 0.00 2.74
2357 2624 7.544566 ACAATGTAGGACGTTATTTGACACTAG 59.455 37.037 0.00 0.00 0.00 2.57
2358 2625 6.579666 TGTAGGACGTTATTTGACACTAGT 57.420 37.500 0.00 0.00 0.00 2.57
2359 2626 6.615088 TGTAGGACGTTATTTGACACTAGTC 58.385 40.000 0.00 0.00 45.19 2.59
2360 2627 5.069501 AGGACGTTATTTGACACTAGTCC 57.930 43.478 0.00 3.35 44.33 3.85
2361 2628 5.069501 GGACGTTATTTGACACTAGTCCT 57.930 43.478 0.00 0.00 44.33 3.85
2362 2629 6.199937 GGACGTTATTTGACACTAGTCCTA 57.800 41.667 0.00 0.00 44.33 2.94
2363 2630 6.032717 GGACGTTATTTGACACTAGTCCTAC 58.967 44.000 0.00 0.00 44.33 3.18
2364 2631 6.349611 GGACGTTATTTGACACTAGTCCTACA 60.350 42.308 0.00 0.00 44.33 2.74
2365 2632 7.166691 ACGTTATTTGACACTAGTCCTACAT 57.833 36.000 0.00 0.00 44.33 2.29
2366 2633 7.609056 ACGTTATTTGACACTAGTCCTACATT 58.391 34.615 0.00 0.00 44.33 2.71
2367 2634 8.742777 ACGTTATTTGACACTAGTCCTACATTA 58.257 33.333 0.00 0.00 44.33 1.90
2368 2635 9.745880 CGTTATTTGACACTAGTCCTACATTAT 57.254 33.333 0.00 0.00 44.33 1.28
2371 2638 6.479972 TTGACACTAGTCCTACATTATGGG 57.520 41.667 0.00 0.00 44.33 4.00
2372 2639 5.773091 TGACACTAGTCCTACATTATGGGA 58.227 41.667 0.00 0.00 44.33 4.37
2378 2645 2.605257 TCCTACATTATGGGACGGAGG 58.395 52.381 0.00 0.00 31.72 4.30
2379 2646 1.623811 CCTACATTATGGGACGGAGGG 59.376 57.143 0.00 0.00 0.00 4.30
2380 2647 2.605257 CTACATTATGGGACGGAGGGA 58.395 52.381 0.00 0.00 0.00 4.20
2381 2648 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2382 2649 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2387 2654 0.033405 TGGGACGGAGGGAGTAGAAG 60.033 60.000 0.00 0.00 0.00 2.85
2402 2669 4.973168 AGTAGAAGGCAGAAACAACATGA 58.027 39.130 0.00 0.00 0.00 3.07
2407 2674 1.336240 GGCAGAAACAACATGACAGCC 60.336 52.381 0.00 0.00 0.00 4.85
2452 2719 3.084786 GCCTGAGCTCAACCATAGTTTT 58.915 45.455 18.85 0.00 32.19 2.43
2453 2720 3.119708 GCCTGAGCTCAACCATAGTTTTG 60.120 47.826 18.85 0.91 32.19 2.44
2455 2722 2.819608 TGAGCTCAACCATAGTTTTGCC 59.180 45.455 15.67 0.00 34.13 4.52
2478 2745 0.909610 TTCTAGGTGGCAGGGTGAGG 60.910 60.000 0.00 0.00 0.00 3.86
2501 2768 0.556747 ATCCGTCTAGGGTGGTAGCT 59.443 55.000 0.00 0.00 41.52 3.32
2540 2807 2.880890 CTCACCTTTTCCCAGTCTTGTG 59.119 50.000 0.00 0.00 0.00 3.33
2578 2848 0.390472 CCCTTCTCTCTCCGTGTTGC 60.390 60.000 0.00 0.00 0.00 4.17
2630 2901 5.086104 AGCGGAGAGAAAACTTAATGCTA 57.914 39.130 0.00 0.00 0.00 3.49
2634 2905 7.769044 AGCGGAGAGAAAACTTAATGCTATTAA 59.231 33.333 0.00 0.00 0.00 1.40
2644 2915 7.715265 ACTTAATGCTATTAATCACAGGACG 57.285 36.000 0.00 0.00 0.00 4.79
2645 2916 6.706270 ACTTAATGCTATTAATCACAGGACGG 59.294 38.462 0.00 0.00 0.00 4.79
2647 2918 2.769663 TGCTATTAATCACAGGACGGGT 59.230 45.455 0.00 0.00 0.00 5.28
2724 3000 5.387279 ACAAGATTGTTGTAAATTACGGCG 58.613 37.500 4.80 4.80 38.47 6.46
2740 3016 1.139520 GCGCGGGCATTCTGATTTT 59.860 52.632 20.76 0.00 39.62 1.82
2799 3075 8.749026 ATCTCATTCTCTGTGCTAATTTTCAT 57.251 30.769 0.00 0.00 0.00 2.57
2887 3163 3.648339 TGAATGCTCAAGCTTTTGTCC 57.352 42.857 0.00 0.00 42.66 4.02
2891 3167 1.795170 GCTCAAGCTTTTGTCCGGCA 61.795 55.000 0.00 0.00 38.21 5.69
2915 3191 9.390795 GCATATGTCTTTATGTTTAATCAGCAG 57.609 33.333 4.29 0.00 33.07 4.24
2919 3195 8.032952 TGTCTTTATGTTTAATCAGCAGACAG 57.967 34.615 15.02 0.00 0.00 3.51
2944 3220 6.037610 GTGAGAGCTTAGTATTTGGTGGATTG 59.962 42.308 0.00 0.00 0.00 2.67
3033 3309 5.046663 TGGTAGTGCTGTGATTCATCTTGTA 60.047 40.000 0.00 0.00 0.00 2.41
3034 3310 5.874810 GGTAGTGCTGTGATTCATCTTGTAA 59.125 40.000 0.00 0.00 0.00 2.41
3035 3311 6.540189 GGTAGTGCTGTGATTCATCTTGTAAT 59.460 38.462 0.00 0.00 0.00 1.89
3036 3312 7.710907 GGTAGTGCTGTGATTCATCTTGTAATA 59.289 37.037 0.00 0.00 0.00 0.98
3037 3313 9.265901 GTAGTGCTGTGATTCATCTTGTAATAT 57.734 33.333 0.00 0.00 0.00 1.28
3039 3315 9.265901 AGTGCTGTGATTCATCTTGTAATATAC 57.734 33.333 0.00 0.00 0.00 1.47
3040 3316 9.265901 GTGCTGTGATTCATCTTGTAATATACT 57.734 33.333 0.00 0.00 0.00 2.12
3041 3317 9.836864 TGCTGTGATTCATCTTGTAATATACTT 57.163 29.630 0.00 0.00 0.00 2.24
3049 3325 9.542462 TTCATCTTGTAATATACTTGGTAGTGC 57.458 33.333 0.00 0.00 35.78 4.40
3050 3326 8.924303 TCATCTTGTAATATACTTGGTAGTGCT 58.076 33.333 0.00 0.00 35.78 4.40
3051 3327 8.982685 CATCTTGTAATATACTTGGTAGTGCTG 58.017 37.037 0.00 0.00 35.78 4.41
3052 3328 8.074613 TCTTGTAATATACTTGGTAGTGCTGT 57.925 34.615 0.00 0.00 35.78 4.40
3053 3329 7.979537 TCTTGTAATATACTTGGTAGTGCTGTG 59.020 37.037 0.00 0.00 35.78 3.66
3054 3330 7.412853 TGTAATATACTTGGTAGTGCTGTGA 57.587 36.000 0.00 0.00 35.78 3.58
3055 3331 8.018537 TGTAATATACTTGGTAGTGCTGTGAT 57.981 34.615 0.00 0.00 35.78 3.06
3093 3369 3.470709 ACATCCATGTCGATTTGCTAGG 58.529 45.455 0.00 0.00 35.87 3.02
3099 3375 4.437390 CCATGTCGATTTGCTAGGTTCAAC 60.437 45.833 0.00 0.00 0.00 3.18
3100 3376 3.734463 TGTCGATTTGCTAGGTTCAACA 58.266 40.909 0.00 0.00 0.00 3.33
3101 3377 3.496884 TGTCGATTTGCTAGGTTCAACAC 59.503 43.478 0.00 0.00 0.00 3.32
3149 3425 4.727507 TGTCTTCCTCAGAACATAGAGC 57.272 45.455 0.00 0.00 31.28 4.09
3150 3426 4.089361 TGTCTTCCTCAGAACATAGAGCA 58.911 43.478 0.00 0.00 31.28 4.26
3152 3428 5.188555 TGTCTTCCTCAGAACATAGAGCATT 59.811 40.000 0.00 0.00 31.28 3.56
3154 3430 7.093333 TGTCTTCCTCAGAACATAGAGCATTTA 60.093 37.037 0.00 0.00 31.28 1.40
3155 3431 7.930865 GTCTTCCTCAGAACATAGAGCATTTAT 59.069 37.037 0.00 0.00 31.28 1.40
3157 3433 8.442632 TTCCTCAGAACATAGAGCATTTATTG 57.557 34.615 0.00 0.00 0.00 1.90
3231 3507 6.520272 AGCTAATAGTCTCATGAATCACCAC 58.480 40.000 0.00 0.00 0.00 4.16
3253 3533 8.789762 ACCACAATATTTTAACAGTGTCTAACC 58.210 33.333 0.00 0.00 0.00 2.85
3260 3540 6.371809 TTTAACAGTGTCTAACCTGCAAAG 57.628 37.500 0.00 0.00 0.00 2.77
3291 3571 6.888430 ACAGCACGTATAATTTATAGCTTGC 58.112 36.000 0.00 12.08 0.00 4.01
3294 3574 6.147821 AGCACGTATAATTTATAGCTTGCCAG 59.852 38.462 14.48 0.00 0.00 4.85
3309 3589 2.403252 GCCAGAACTAAGCTAAGGCA 57.597 50.000 0.00 0.00 40.29 4.75
3327 3607 1.665161 GCAAAGTGCAGCTTGCTACAG 60.665 52.381 20.36 3.13 45.31 2.74
3335 3615 2.759191 CAGCTTGCTACAGAAGTGTGA 58.241 47.619 0.00 0.00 37.52 3.58
3377 3657 4.100808 AGGTGTGGCAAGATTTAGCAAAAA 59.899 37.500 0.00 0.00 0.00 1.94
3380 3660 6.017192 GGTGTGGCAAGATTTAGCAAAAATTT 60.017 34.615 0.00 0.00 0.00 1.82
3383 3663 8.147058 TGTGGCAAGATTTAGCAAAAATTTAGA 58.853 29.630 0.00 0.00 0.00 2.10
3384 3664 8.987890 GTGGCAAGATTTAGCAAAAATTTAGAA 58.012 29.630 0.00 0.00 0.00 2.10
3385 3665 9.206870 TGGCAAGATTTAGCAAAAATTTAGAAG 57.793 29.630 0.00 0.00 0.00 2.85
3386 3666 9.208022 GGCAAGATTTAGCAAAAATTTAGAAGT 57.792 29.630 0.00 0.00 0.00 3.01
3395 3675 8.411318 AGCAAAAATTTAGAAGTTTGTGACAG 57.589 30.769 4.98 0.00 34.24 3.51
3435 3715 7.990541 TTAAAGTGCAGCAATGCTTATAATG 57.009 32.000 4.36 0.00 36.40 1.90
3466 3746 5.648092 AGACACATACCTAAAAATCTGTGGC 59.352 40.000 5.59 2.12 41.80 5.01
3476 3756 0.462759 AATCTGTGGCTCGCCTAAGC 60.463 55.000 9.65 0.00 41.73 3.09
3491 3771 4.820284 CCTAAGCTTAGGCATAGCAAAC 57.180 45.455 33.96 0.00 43.43 2.93
3492 3772 4.455606 CCTAAGCTTAGGCATAGCAAACT 58.544 43.478 33.96 0.00 43.43 2.66
3493 3773 4.274459 CCTAAGCTTAGGCATAGCAAACTG 59.726 45.833 33.96 10.64 43.43 3.16
3494 3774 3.356529 AGCTTAGGCATAGCAAACTGT 57.643 42.857 12.44 0.00 41.11 3.55
3495 3775 3.012518 AGCTTAGGCATAGCAAACTGTG 58.987 45.455 12.44 0.00 41.11 3.66
3496 3776 2.098117 GCTTAGGCATAGCAAACTGTGG 59.902 50.000 6.06 0.00 38.51 4.17
3500 3780 0.097674 GCATAGCAAACTGTGGCTCG 59.902 55.000 10.07 5.44 41.41 5.03
3501 3781 0.097674 CATAGCAAACTGTGGCTCGC 59.902 55.000 10.07 0.00 41.41 5.03
3502 3782 1.026718 ATAGCAAACTGTGGCTCGCC 61.027 55.000 10.07 0.00 41.41 5.54
3503 3783 2.111999 TAGCAAACTGTGGCTCGCCT 62.112 55.000 9.65 0.00 41.41 5.52
3504 3784 1.671054 GCAAACTGTGGCTCGCCTA 60.671 57.895 9.65 0.00 36.94 3.93
3505 3785 1.234615 GCAAACTGTGGCTCGCCTAA 61.235 55.000 9.65 0.00 36.94 2.69
3506 3786 0.798776 CAAACTGTGGCTCGCCTAAG 59.201 55.000 9.65 8.88 36.94 2.18
3507 3787 0.955919 AAACTGTGGCTCGCCTAAGC 60.956 55.000 9.65 0.00 41.73 3.09
3508 3788 1.831652 AACTGTGGCTCGCCTAAGCT 61.832 55.000 9.65 0.00 42.13 3.74
3509 3789 1.078848 CTGTGGCTCGCCTAAGCTT 60.079 57.895 3.48 3.48 42.13 3.74
3510 3790 0.175760 CTGTGGCTCGCCTAAGCTTA 59.824 55.000 9.65 5.94 42.13 3.09
3511 3791 0.175760 TGTGGCTCGCCTAAGCTTAG 59.824 55.000 24.11 24.11 42.13 2.18
3555 3835 1.967066 CCACAAATGCCCTTGGTTACA 59.033 47.619 0.55 0.00 0.00 2.41
3563 3843 5.760484 ATGCCCTTGGTTACATCATTTTT 57.240 34.783 0.00 0.00 0.00 1.94
3564 3844 4.892433 TGCCCTTGGTTACATCATTTTTG 58.108 39.130 0.00 0.00 0.00 2.44
3566 3846 4.020662 GCCCTTGGTTACATCATTTTTGGA 60.021 41.667 0.00 0.00 0.00 3.53
3567 3847 5.338300 GCCCTTGGTTACATCATTTTTGGAT 60.338 40.000 0.00 0.00 0.00 3.41
3568 3848 6.340522 CCCTTGGTTACATCATTTTTGGATC 58.659 40.000 0.00 0.00 0.00 3.36
3569 3849 6.070881 CCCTTGGTTACATCATTTTTGGATCA 60.071 38.462 0.00 0.00 0.00 2.92
3597 3877 4.021104 GCATATGCTGGTACTATGACTGGA 60.021 45.833 20.64 0.00 38.21 3.86
3598 3878 5.718146 CATATGCTGGTACTATGACTGGAG 58.282 45.833 0.00 0.00 0.00 3.86
3599 3879 1.757118 TGCTGGTACTATGACTGGAGC 59.243 52.381 0.00 0.00 0.00 4.70
3601 3881 2.223923 GCTGGTACTATGACTGGAGCTG 60.224 54.545 0.00 0.00 0.00 4.24
3603 3883 3.024547 TGGTACTATGACTGGAGCTGTC 58.975 50.000 0.00 0.00 33.83 3.51
3604 3884 3.292460 GGTACTATGACTGGAGCTGTCT 58.708 50.000 0.00 0.00 34.25 3.41
3606 3886 4.888239 GGTACTATGACTGGAGCTGTCTTA 59.112 45.833 0.00 0.00 34.25 2.10
3607 3887 5.009210 GGTACTATGACTGGAGCTGTCTTAG 59.991 48.000 17.29 17.29 41.31 2.18
3620 3900 3.594134 CTGTCTTAGCCTGTCTTTCTGG 58.406 50.000 0.00 0.00 38.06 3.86
3621 3901 3.239449 TGTCTTAGCCTGTCTTTCTGGA 58.761 45.455 0.00 0.00 37.33 3.86
3622 3902 3.259374 TGTCTTAGCCTGTCTTTCTGGAG 59.741 47.826 0.00 0.00 37.33 3.86
3623 3903 2.234908 TCTTAGCCTGTCTTTCTGGAGC 59.765 50.000 0.00 0.00 37.33 4.70
3624 3904 1.944177 TAGCCTGTCTTTCTGGAGCT 58.056 50.000 0.00 0.00 37.33 4.09
3625 3905 0.612744 AGCCTGTCTTTCTGGAGCTC 59.387 55.000 4.71 4.71 37.33 4.09
3626 3906 0.322975 GCCTGTCTTTCTGGAGCTCA 59.677 55.000 17.19 0.61 37.33 4.26
3627 3907 1.271054 GCCTGTCTTTCTGGAGCTCAA 60.271 52.381 17.19 2.44 37.33 3.02
3628 3908 2.811873 GCCTGTCTTTCTGGAGCTCAAA 60.812 50.000 17.19 6.79 37.33 2.69
3629 3909 3.480470 CCTGTCTTTCTGGAGCTCAAAA 58.520 45.455 17.19 11.41 37.33 2.44
3630 3910 4.077822 CCTGTCTTTCTGGAGCTCAAAAT 58.922 43.478 17.19 0.00 37.33 1.82
3631 3911 5.248640 CCTGTCTTTCTGGAGCTCAAAATA 58.751 41.667 17.19 3.10 37.33 1.40
3632 3912 5.353678 CCTGTCTTTCTGGAGCTCAAAATAG 59.646 44.000 17.19 7.03 37.33 1.73
3633 3913 5.248640 TGTCTTTCTGGAGCTCAAAATAGG 58.751 41.667 17.19 2.18 0.00 2.57
3634 3914 4.095632 GTCTTTCTGGAGCTCAAAATAGGC 59.904 45.833 17.19 4.70 0.00 3.93
3635 3915 3.719268 TTCTGGAGCTCAAAATAGGCA 57.281 42.857 17.19 0.19 0.00 4.75
3636 3916 3.272574 TCTGGAGCTCAAAATAGGCAG 57.727 47.619 17.19 10.75 0.00 4.85
3637 3917 2.573462 TCTGGAGCTCAAAATAGGCAGT 59.427 45.455 17.19 0.00 0.00 4.40
3638 3918 2.681848 CTGGAGCTCAAAATAGGCAGTG 59.318 50.000 17.19 0.00 0.00 3.66
3639 3919 2.305635 TGGAGCTCAAAATAGGCAGTGA 59.694 45.455 17.19 0.00 0.00 3.41
3640 3920 3.244875 TGGAGCTCAAAATAGGCAGTGAA 60.245 43.478 17.19 0.00 0.00 3.18
3641 3921 3.127721 GGAGCTCAAAATAGGCAGTGAAC 59.872 47.826 17.19 0.00 0.00 3.18
3642 3922 3.753272 GAGCTCAAAATAGGCAGTGAACA 59.247 43.478 9.40 0.00 0.00 3.18
3643 3923 3.755378 AGCTCAAAATAGGCAGTGAACAG 59.245 43.478 0.00 0.00 0.00 3.16
3644 3924 3.671702 GCTCAAAATAGGCAGTGAACAGC 60.672 47.826 0.00 0.00 0.00 4.40
3645 3925 3.754965 TCAAAATAGGCAGTGAACAGCT 58.245 40.909 0.00 0.00 0.00 4.24
3646 3926 4.144297 TCAAAATAGGCAGTGAACAGCTT 58.856 39.130 0.00 0.00 0.00 3.74
3647 3927 5.312895 TCAAAATAGGCAGTGAACAGCTTA 58.687 37.500 0.00 0.00 0.00 3.09
3648 3928 5.767665 TCAAAATAGGCAGTGAACAGCTTAA 59.232 36.000 0.00 0.00 0.00 1.85
3649 3929 5.629079 AAATAGGCAGTGAACAGCTTAAC 57.371 39.130 0.00 0.00 0.00 2.01
3650 3930 1.897560 AGGCAGTGAACAGCTTAACC 58.102 50.000 0.00 0.00 0.00 2.85
3651 3931 0.881796 GGCAGTGAACAGCTTAACCC 59.118 55.000 0.00 0.00 0.00 4.11
3652 3932 1.604604 GCAGTGAACAGCTTAACCCA 58.395 50.000 0.00 0.00 0.00 4.51
3653 3933 1.537202 GCAGTGAACAGCTTAACCCAG 59.463 52.381 0.00 0.00 0.00 4.45
3654 3934 1.537202 CAGTGAACAGCTTAACCCAGC 59.463 52.381 0.00 0.00 40.44 4.85
3665 3945 3.559384 GCTTAACCCAGCTGGACTAGTTT 60.559 47.826 34.91 17.33 36.79 2.66
3687 3967 3.228188 TGTCTGCTTCCCAACAGAAAT 57.772 42.857 0.00 0.00 44.14 2.17
3724 4005 4.530553 TGACAAAGCTACTATCCCTGTTCA 59.469 41.667 0.00 0.00 0.00 3.18
3725 4006 4.833390 ACAAAGCTACTATCCCTGTTCAC 58.167 43.478 0.00 0.00 0.00 3.18
3740 4021 7.284074 TCCCTGTTCACTTCTATTGTTGTTTA 58.716 34.615 0.00 0.00 0.00 2.01
3751 4034 9.817365 CTTCTATTGTTGTTTAAGACATCAGTG 57.183 33.333 0.00 0.00 38.73 3.66
3825 4108 1.830587 ATGGAGAACTGACAGCGGCA 61.831 55.000 1.25 0.00 0.00 5.69
3835 4118 4.189188 CAGCGGCATCTGCTTGGC 62.189 66.667 1.45 4.05 41.72 4.52
3865 4148 3.728864 GCCGTCTCATGTTGCATACTTTG 60.729 47.826 0.00 0.00 0.00 2.77
3891 4180 1.112315 GTGGGCATTGGGTGTGACAA 61.112 55.000 0.00 0.00 0.00 3.18
4040 4333 6.268566 AGAACACTTGTTTTTCTTCTCATGC 58.731 36.000 0.00 0.00 38.56 4.06
4052 4429 9.844790 TTTTTCTTCTCATGCATTATGTTACTG 57.155 29.630 0.00 0.00 38.01 2.74
4061 4438 5.882553 TGCATTATGTTACTGAGCATGTTG 58.117 37.500 0.00 0.00 0.00 3.33
4070 4447 7.564793 TGTTACTGAGCATGTTGTAGGATTAT 58.435 34.615 0.00 0.00 0.00 1.28
4076 4453 3.304928 GCATGTTGTAGGATTATGCCTGC 60.305 47.826 0.00 0.00 39.08 4.85
4083 4460 5.551233 TGTAGGATTATGCCTGCTAATGTC 58.449 41.667 0.00 0.00 40.80 3.06
4085 4462 5.052693 AGGATTATGCCTGCTAATGTCAA 57.947 39.130 0.00 0.00 36.76 3.18
4093 4470 4.523943 TGCCTGCTAATGTCAAAAGTTGAT 59.476 37.500 0.00 0.00 42.47 2.57
4098 4475 7.816031 CCTGCTAATGTCAAAAGTTGATTGAAT 59.184 33.333 0.00 0.00 42.47 2.57
4145 4529 3.572584 GAAAAGATTGCCTGCTGTTCAG 58.427 45.455 0.00 0.00 42.49 3.02
4160 4544 6.169800 TGCTGTTCAGCAGTAATACATGTAA 58.830 36.000 21.30 0.00 46.64 2.41
4167 4551 7.905126 TCAGCAGTAATACATGTAAATTGTCG 58.095 34.615 10.14 4.66 0.00 4.35
4169 4553 7.846107 CAGCAGTAATACATGTAAATTGTCGTC 59.154 37.037 10.14 0.00 0.00 4.20
4193 4577 6.206634 TCCTTTTGTCAAGGTAGCAACATAAG 59.793 38.462 13.31 13.31 38.55 1.73
4203 4587 5.592688 AGGTAGCAACATAAGTTTTGTGTGT 59.407 36.000 0.00 0.00 35.07 3.72
4321 4706 0.512952 ATCGCTGTCACGCTTGAAAC 59.487 50.000 0.00 0.00 31.90 2.78
4390 4775 0.801067 GCTACCGCAAGTCAGGTACG 60.801 60.000 0.00 0.00 41.63 3.67
4564 4949 7.339212 ACACAAGAATATGCTTTTATGGTGCTA 59.661 33.333 9.68 0.00 0.00 3.49
4583 4968 4.880120 TGCTATTTCTGAGAAAGATGCCAG 59.120 41.667 13.56 4.88 33.93 4.85
4698 5083 4.513442 CCTCCGATCCAAAATAAGTGTCA 58.487 43.478 0.00 0.00 0.00 3.58
4734 5119 2.014857 GGGAGTAGGAATTTTGGTCGC 58.985 52.381 0.00 0.00 0.00 5.19
4842 5227 1.273759 TCCATGAGACTGAAGCTGCT 58.726 50.000 0.00 0.00 0.00 4.24
4967 5363 5.108385 CAAACTAATTTGGACTTGACGCT 57.892 39.130 0.00 0.00 41.39 5.07
4974 5370 3.974871 TTGGACTTGACGCTTTTTACC 57.025 42.857 0.00 0.00 0.00 2.85
4980 5376 0.863144 TGACGCTTTTTACCACTCGC 59.137 50.000 0.00 0.00 0.00 5.03
4992 5388 2.561569 ACCACTCGCAAGCCAATATAC 58.438 47.619 0.00 0.00 37.18 1.47
4995 5391 3.248602 CCACTCGCAAGCCAATATACTTC 59.751 47.826 0.00 0.00 37.18 3.01
5047 5443 7.387397 GCTGGTTTTATTGATTGGAAAACATGA 59.613 33.333 0.00 0.00 42.30 3.07
5071 5467 4.668576 ACAGCATTCACAATTACACTCG 57.331 40.909 0.00 0.00 0.00 4.18
5233 5644 2.030457 CGCCTGAACAAAACTATAGCCG 59.970 50.000 0.00 0.00 0.00 5.52
5273 5684 4.383118 CCTTCATAGTAACACCAGGGACAG 60.383 50.000 0.00 0.00 0.00 3.51
5414 5840 3.371063 GACTCGCCTCGTGTCCCA 61.371 66.667 9.44 0.00 42.17 4.37
5429 5903 3.192633 GTGTCCCATTGGGTAACATGTTC 59.807 47.826 21.31 6.91 44.74 3.18
5431 5905 3.694566 GTCCCATTGGGTAACATGTTCTC 59.305 47.826 21.31 9.58 44.74 2.87
5479 5953 3.719173 AATAGAGAGCGGTAAGAGCAC 57.281 47.619 0.00 0.00 37.01 4.40
5509 5983 2.050442 CAAACCCGCCTCAAACGC 60.050 61.111 0.00 0.00 0.00 4.84
5510 5984 3.292159 AAACCCGCCTCAAACGCC 61.292 61.111 0.00 0.00 0.00 5.68
5517 5991 4.338710 CCTCAAACGCCCGGGGAA 62.339 66.667 25.28 0.92 0.00 3.97
5518 5992 3.053896 CTCAAACGCCCGGGGAAC 61.054 66.667 25.28 4.20 0.00 3.62
5519 5993 4.992511 TCAAACGCCCGGGGAACG 62.993 66.667 25.28 20.22 43.80 3.95
5534 6008 0.321653 GAACGGCCTGGTCATTGACT 60.322 55.000 16.02 0.00 32.47 3.41
5545 6019 3.631686 TGGTCATTGACTGGTCACAAAAG 59.368 43.478 16.02 0.00 39.66 2.27
5564 6038 0.972883 GTCCAACTCAGACTGGCTCT 59.027 55.000 1.81 0.00 32.33 4.09
5574 6048 1.697982 AGACTGGCTCTTTAAACGGGT 59.302 47.619 0.00 0.00 0.00 5.28
5582 6056 3.363673 GCTCTTTAAACGGGTCTCAAACG 60.364 47.826 0.00 0.00 0.00 3.60
5584 6058 3.803778 TCTTTAAACGGGTCTCAAACGTC 59.196 43.478 0.00 0.00 40.31 4.34
5588 6062 2.922950 CGGGTCTCAAACGTCCGGA 61.923 63.158 0.00 0.00 37.35 5.14
5589 6063 1.373873 GGGTCTCAAACGTCCGGAC 60.374 63.158 25.28 25.28 0.00 4.79
5611 6088 1.290324 CCGTCCCTCATATCCAGCG 59.710 63.158 0.00 0.00 0.00 5.18
5627 6104 0.185901 AGCGCAAATATGGGGTGGAT 59.814 50.000 11.47 0.00 46.84 3.41
5628 6105 1.423541 AGCGCAAATATGGGGTGGATA 59.576 47.619 11.47 0.00 46.84 2.59
5630 6107 3.265737 AGCGCAAATATGGGGTGGATATA 59.734 43.478 11.47 0.00 46.84 0.86
5631 6108 3.627577 GCGCAAATATGGGGTGGATATAG 59.372 47.826 0.30 0.00 39.74 1.31
5632 6109 4.199310 CGCAAATATGGGGTGGATATAGG 58.801 47.826 0.00 0.00 35.94 2.57
5633 6110 4.536765 GCAAATATGGGGTGGATATAGGG 58.463 47.826 0.00 0.00 0.00 3.53
5634 6111 4.536765 CAAATATGGGGTGGATATAGGGC 58.463 47.826 0.00 0.00 0.00 5.19
5635 6112 1.874129 TATGGGGTGGATATAGGGCG 58.126 55.000 0.00 0.00 0.00 6.13
5636 6113 1.562672 ATGGGGTGGATATAGGGCGC 61.563 60.000 0.00 0.00 0.00 6.53
5637 6114 2.669240 GGGTGGATATAGGGCGCC 59.331 66.667 21.18 21.18 0.00 6.53
5676 6153 1.198759 GGACTTGACAGCCCTACCCA 61.199 60.000 0.00 0.00 0.00 4.51
5677 6154 0.036294 GACTTGACAGCCCTACCCAC 60.036 60.000 0.00 0.00 0.00 4.61
5679 6156 1.462432 TTGACAGCCCTACCCACCA 60.462 57.895 0.00 0.00 0.00 4.17
5680 6157 0.844661 TTGACAGCCCTACCCACCAT 60.845 55.000 0.00 0.00 0.00 3.55
5681 6158 0.043485 TGACAGCCCTACCCACCATA 59.957 55.000 0.00 0.00 0.00 2.74
5683 6160 1.774856 GACAGCCCTACCCACCATAAT 59.225 52.381 0.00 0.00 0.00 1.28
5686 6163 2.958355 CAGCCCTACCCACCATAATTTG 59.042 50.000 0.00 0.00 0.00 2.32
5687 6164 1.686587 GCCCTACCCACCATAATTTGC 59.313 52.381 0.00 0.00 0.00 3.68
5689 6166 2.091333 CCCTACCCACCATAATTTGCCT 60.091 50.000 0.00 0.00 0.00 4.75
5690 6167 3.222603 CCTACCCACCATAATTTGCCTC 58.777 50.000 0.00 0.00 0.00 4.70
5691 6168 2.917713 ACCCACCATAATTTGCCTCA 57.082 45.000 0.00 0.00 0.00 3.86
5694 6171 3.260632 ACCCACCATAATTTGCCTCAAAC 59.739 43.478 0.00 0.00 36.13 2.93
5727 6213 1.993391 CCGCCCTCCTACCTTTCCA 60.993 63.158 0.00 0.00 0.00 3.53
5738 6224 3.752339 CTTTCCAGCGCCCAAGCC 61.752 66.667 2.29 0.00 38.01 4.35
5769 6255 1.225704 CACCCTTGCTCCCATCCTC 59.774 63.158 0.00 0.00 0.00 3.71
5772 6258 1.277580 CCCTTGCTCCCATCCTCACT 61.278 60.000 0.00 0.00 0.00 3.41
5787 6273 1.755395 CACTACCGGTCCCGATCCA 60.755 63.158 12.40 0.00 42.83 3.41
5788 6274 1.113517 CACTACCGGTCCCGATCCAT 61.114 60.000 12.40 0.00 42.83 3.41
5807 6293 0.681887 TCGCCCTAGATGTCGTCCAA 60.682 55.000 0.00 0.00 0.00 3.53
5847 6333 2.276116 GGAGACTGCGTCCACCTCA 61.276 63.158 5.29 0.00 33.84 3.86
5848 6334 1.608717 GGAGACTGCGTCCACCTCAT 61.609 60.000 5.29 0.00 33.84 2.90
5878 6364 2.492090 CTTCCTCTGCTCCGTCGG 59.508 66.667 4.39 4.39 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.431782 GCCTATGTTGTGCAATGGGAAT 59.568 45.455 2.87 0.00 0.00 3.01
58 59 4.142381 GGATTTTGTCGCTTGGAGCTATTT 60.142 41.667 0.00 0.00 39.60 1.40
78 79 3.117016 AGCCCCAACATGACATATTGGAT 60.117 43.478 24.24 9.03 44.84 3.41
84 85 3.052329 TCCATAGCCCCAACATGACATA 58.948 45.455 0.00 0.00 0.00 2.29
100 101 6.286758 ACAAATGTTGTGTTGCAATTCCATA 58.713 32.000 0.59 0.00 43.48 2.74
153 176 9.229784 CTGATTTAATTGATCTTGATTCCGTTG 57.770 33.333 0.00 0.00 0.00 4.10
224 247 6.039616 GCTTAATCCCGAATTGTGCAAATAA 58.960 36.000 0.00 0.00 31.47 1.40
284 307 5.689383 AAATCATGGTTGTATATGGCGTC 57.311 39.130 0.00 0.00 0.00 5.19
295 320 7.335673 GGGGGTTAATTGTTTAAATCATGGTTG 59.664 37.037 0.00 0.00 0.00 3.77
308 333 6.747931 AGTATTATGGTGGGGGTTAATTGTT 58.252 36.000 0.00 0.00 0.00 2.83
321 346 8.519526 TCTTTTACTTGGCAAAGTATTATGGTG 58.480 33.333 14.52 2.41 45.93 4.17
322 347 8.644374 TCTTTTACTTGGCAAAGTATTATGGT 57.356 30.769 14.52 0.00 45.93 3.55
357 382 7.761249 GGTGACTTATTGAATGCAAAGCTAAAT 59.239 33.333 0.00 0.00 37.59 1.40
378 403 1.680735 TGTTGCCACTCAAATGGTGAC 59.319 47.619 0.00 0.00 42.28 3.67
423 448 3.000041 CCGGACATCGTTTGAATTCTCA 59.000 45.455 7.05 0.00 37.11 3.27
430 455 3.731089 AGTTTTACCGGACATCGTTTGA 58.269 40.909 9.46 0.00 37.11 2.69
502 527 3.055675 CGAGGTACCCATGTGTCCTTAAA 60.056 47.826 8.74 0.00 32.74 1.52
507 532 0.175073 GTCGAGGTACCCATGTGTCC 59.825 60.000 8.74 0.00 0.00 4.02
563 595 1.628846 AGGACTAAAATGGGTCGTGCT 59.371 47.619 0.00 0.00 33.70 4.40
577 609 3.075005 GTGCCCGGCAGAGGACTA 61.075 66.667 13.92 0.00 40.08 2.59
620 652 6.183360 CGTGAAACTTTCCCTCTAGCTATAGT 60.183 42.308 0.84 0.00 31.75 2.12
630 662 3.683340 GGTATCACGTGAAACTTTCCCTC 59.317 47.826 24.13 3.75 31.75 4.30
631 663 3.671716 GGTATCACGTGAAACTTTCCCT 58.328 45.455 24.13 4.95 31.75 4.20
644 676 2.232941 ACATATAAGGGGCGGTATCACG 59.767 50.000 0.00 0.00 0.00 4.35
670 702 2.683933 CCCAGGAGGCGGTACTGT 60.684 66.667 3.10 0.00 0.00 3.55
679 711 2.983879 AATCCAACGGCCCAGGAGG 61.984 63.158 10.78 0.47 34.40 4.30
706 742 2.303022 TGGGTCCATCAACTTCTCAGAC 59.697 50.000 0.00 0.00 0.00 3.51
729 775 9.444600 AGCTATCCAAGAGTTTTAAAATTACGA 57.555 29.630 3.52 0.00 0.00 3.43
749 795 9.357652 TCTTGAATATTTTGCACAAAAGCTATC 57.642 29.630 13.43 9.53 42.72 2.08
752 798 6.146673 GCTCTTGAATATTTTGCACAAAAGCT 59.853 34.615 13.43 1.75 42.72 3.74
766 813 4.282195 CGGTTCCTAGGAGCTCTTGAATAT 59.718 45.833 23.20 0.00 0.00 1.28
797 844 2.187958 TGGATCTGAACCGTTGGATCT 58.812 47.619 16.72 0.00 36.02 2.75
799 846 2.711542 GTTGGATCTGAACCGTTGGAT 58.288 47.619 0.00 0.00 0.00 3.41
800 847 1.606994 CGTTGGATCTGAACCGTTGGA 60.607 52.381 0.00 0.00 0.00 3.53
801 848 0.796312 CGTTGGATCTGAACCGTTGG 59.204 55.000 0.00 0.00 0.00 3.77
802 849 0.796312 CCGTTGGATCTGAACCGTTG 59.204 55.000 0.00 0.00 0.00 4.10
803 850 0.395312 ACCGTTGGATCTGAACCGTT 59.605 50.000 0.00 0.00 0.00 4.44
804 851 0.395312 AACCGTTGGATCTGAACCGT 59.605 50.000 0.00 0.00 0.00 4.83
805 852 1.076332 GAACCGTTGGATCTGAACCG 58.924 55.000 0.00 0.00 0.00 4.44
806 853 1.003233 AGGAACCGTTGGATCTGAACC 59.997 52.381 0.00 0.00 0.00 3.62
807 854 2.474410 AGGAACCGTTGGATCTGAAC 57.526 50.000 0.00 0.00 0.00 3.18
808 855 3.170717 ACTAGGAACCGTTGGATCTGAA 58.829 45.455 0.00 0.00 0.00 3.02
809 856 2.816411 ACTAGGAACCGTTGGATCTGA 58.184 47.619 0.00 0.00 0.00 3.27
810 857 3.491104 GCTACTAGGAACCGTTGGATCTG 60.491 52.174 0.00 0.00 0.00 2.90
858 910 1.559682 AGCTTGGTGAATATCGGGTGT 59.440 47.619 0.00 0.00 0.00 4.16
892 946 5.766174 TGTTTCTTTACGGGCAGTATTTCTT 59.234 36.000 0.00 0.00 34.88 2.52
893 947 5.310451 TGTTTCTTTACGGGCAGTATTTCT 58.690 37.500 0.00 0.00 34.88 2.52
894 948 5.616488 TGTTTCTTTACGGGCAGTATTTC 57.384 39.130 0.00 0.00 34.88 2.17
896 950 7.065443 GTCTTATGTTTCTTTACGGGCAGTATT 59.935 37.037 0.00 0.00 34.88 1.89
897 951 6.537660 GTCTTATGTTTCTTTACGGGCAGTAT 59.462 38.462 0.00 0.00 34.88 2.12
902 956 3.063045 CCGTCTTATGTTTCTTTACGGGC 59.937 47.826 0.00 0.00 43.45 6.13
905 959 6.020837 GCTACTCCGTCTTATGTTTCTTTACG 60.021 42.308 0.00 0.00 0.00 3.18
906 960 7.009357 CAGCTACTCCGTCTTATGTTTCTTTAC 59.991 40.741 0.00 0.00 0.00 2.01
907 961 7.033791 CAGCTACTCCGTCTTATGTTTCTTTA 58.966 38.462 0.00 0.00 0.00 1.85
915 975 2.464865 GCACAGCTACTCCGTCTTATG 58.535 52.381 0.00 0.00 0.00 1.90
964 1025 5.699458 CAGTTAGGGTTTAGTTCGATGTTGT 59.301 40.000 0.00 0.00 0.00 3.32
965 1026 5.121768 CCAGTTAGGGTTTAGTTCGATGTTG 59.878 44.000 0.00 0.00 0.00 3.33
998 1062 0.181587 TTGGAACCTGACTTTGGCGA 59.818 50.000 0.00 0.00 0.00 5.54
1065 1129 1.968017 CTGCTTCTTCCGCTTGCCA 60.968 57.895 0.00 0.00 0.00 4.92
1086 1150 1.603739 GAGGCTCTTGGCGGGTTTT 60.604 57.895 7.40 0.00 44.18 2.43
1167 1231 2.328099 GGTTTGGTCCTGCTCAGCG 61.328 63.158 0.00 0.00 0.00 5.18
1369 1433 1.644786 CGAATTTGACAGGACCCGGC 61.645 60.000 0.00 0.00 0.00 6.13
1382 1446 3.589988 AGAGACACGCTGAATCGAATTT 58.410 40.909 0.00 0.00 0.00 1.82
1430 1494 6.183360 CGGATCCGGAAATCTTTTATAATCCG 60.183 42.308 26.95 17.00 46.96 4.18
1870 1934 4.985409 CGGCATCCTCTAGTAAACATCTTC 59.015 45.833 0.00 0.00 0.00 2.87
1946 2010 4.202223 GGGAAGCTAATTGTCGGAGTCATA 60.202 45.833 0.00 0.00 0.00 2.15
1947 2011 3.432326 GGGAAGCTAATTGTCGGAGTCAT 60.432 47.826 0.00 0.00 0.00 3.06
1948 2012 2.093658 GGGAAGCTAATTGTCGGAGTCA 60.094 50.000 0.00 0.00 0.00 3.41
1949 2013 2.093658 TGGGAAGCTAATTGTCGGAGTC 60.094 50.000 0.00 0.00 0.00 3.36
1950 2014 1.906574 TGGGAAGCTAATTGTCGGAGT 59.093 47.619 0.00 0.00 0.00 3.85
1951 2015 2.691409 TGGGAAGCTAATTGTCGGAG 57.309 50.000 0.00 0.00 0.00 4.63
1952 2016 2.304761 ACTTGGGAAGCTAATTGTCGGA 59.695 45.455 0.00 0.00 0.00 4.55
1953 2017 2.678336 GACTTGGGAAGCTAATTGTCGG 59.322 50.000 0.00 0.00 0.00 4.79
1994 2250 0.320374 ATGGTTTTGAGTCGCCGAGA 59.680 50.000 0.00 0.00 0.00 4.04
2022 2278 6.699575 ACAGGATACAACAATCAATAAGGC 57.300 37.500 0.00 0.00 41.41 4.35
2031 2287 4.151883 ACAGGCAAACAGGATACAACAAT 58.848 39.130 0.00 0.00 41.41 2.71
2065 2321 3.240069 GCACAGAGCTGCTTTATTTGTG 58.760 45.455 18.83 18.83 41.15 3.33
2066 2322 2.229784 GGCACAGAGCTGCTTTATTTGT 59.770 45.455 2.53 1.49 44.79 2.83
2067 2323 2.490903 AGGCACAGAGCTGCTTTATTTG 59.509 45.455 2.53 0.85 44.79 2.32
2068 2324 2.751806 GAGGCACAGAGCTGCTTTATTT 59.248 45.455 2.53 0.00 44.79 1.40
2069 2325 2.026449 AGAGGCACAGAGCTGCTTTATT 60.026 45.455 2.53 0.00 44.79 1.40
2117 2373 5.975693 TTCAACATCAAGGTACCAAATCC 57.024 39.130 15.94 0.00 0.00 3.01
2144 2400 6.697019 AGATATCGCAAAAATAATGTTGTGGC 59.303 34.615 0.00 0.00 36.21 5.01
2162 2429 2.064762 GCAGCTAGGTTGCAGATATCG 58.935 52.381 10.26 0.00 39.50 2.92
2182 2449 1.067582 GAGGGAGCCACGAATACGG 59.932 63.158 0.00 0.00 44.46 4.02
2218 2485 1.009829 CAAAGCACCCGTCAGATAGC 58.990 55.000 0.00 0.00 0.00 2.97
2227 2494 2.406452 GAACACTGGCAAAGCACCCG 62.406 60.000 0.00 0.00 0.00 5.28
2241 2508 5.705609 TGCCTCCAAAAGAATTAGAACAC 57.294 39.130 0.00 0.00 0.00 3.32
2261 2528 4.568956 ACTTTTTGCCAAATAGGTCATGC 58.431 39.130 11.49 0.00 40.61 4.06
2270 2537 4.838423 AGGGTTAGCTACTTTTTGCCAAAT 59.162 37.500 0.00 0.00 0.00 2.32
2302 2569 1.545651 GGGAGTACTTTGCTGGCTTGT 60.546 52.381 0.00 0.00 0.00 3.16
2307 2574 1.625818 ACAGAGGGAGTACTTTGCTGG 59.374 52.381 15.63 2.40 0.00 4.85
2317 2584 0.987294 CATTGTGGGACAGAGGGAGT 59.013 55.000 0.00 0.00 41.80 3.85
2318 2585 0.987294 ACATTGTGGGACAGAGGGAG 59.013 55.000 0.00 0.00 41.80 4.30
2319 2586 2.187958 CTACATTGTGGGACAGAGGGA 58.812 52.381 0.00 0.00 41.80 4.20
2320 2587 1.210478 CCTACATTGTGGGACAGAGGG 59.790 57.143 13.63 0.00 41.80 4.30
2321 2588 2.187958 TCCTACATTGTGGGACAGAGG 58.812 52.381 17.14 5.58 41.80 3.69
2327 2594 4.829872 AATAACGTCCTACATTGTGGGA 57.170 40.909 17.14 17.14 40.84 4.37
2328 2595 4.938832 TCAAATAACGTCCTACATTGTGGG 59.061 41.667 12.74 12.74 35.41 4.61
2329 2596 5.410132 TGTCAAATAACGTCCTACATTGTGG 59.590 40.000 0.00 0.00 0.00 4.17
2330 2597 6.147164 AGTGTCAAATAACGTCCTACATTGTG 59.853 38.462 0.00 0.00 0.00 3.33
2331 2598 6.228258 AGTGTCAAATAACGTCCTACATTGT 58.772 36.000 0.00 0.00 0.00 2.71
2332 2599 6.721571 AGTGTCAAATAACGTCCTACATTG 57.278 37.500 0.00 0.00 0.00 2.82
2333 2600 7.609056 ACTAGTGTCAAATAACGTCCTACATT 58.391 34.615 0.00 0.00 0.00 2.71
2334 2601 7.166691 ACTAGTGTCAAATAACGTCCTACAT 57.833 36.000 0.00 0.00 0.00 2.29
2335 2602 6.349611 GGACTAGTGTCAAATAACGTCCTACA 60.350 42.308 0.00 0.00 44.61 2.74
2336 2603 6.032717 GGACTAGTGTCAAATAACGTCCTAC 58.967 44.000 0.00 0.00 44.61 3.18
2337 2604 5.948162 AGGACTAGTGTCAAATAACGTCCTA 59.052 40.000 0.00 0.00 45.82 2.94
2338 2605 4.771054 AGGACTAGTGTCAAATAACGTCCT 59.229 41.667 0.00 0.00 44.61 3.85
2339 2606 5.069501 AGGACTAGTGTCAAATAACGTCC 57.930 43.478 0.00 0.00 44.61 4.79
2340 2607 6.615088 TGTAGGACTAGTGTCAAATAACGTC 58.385 40.000 0.00 0.00 44.61 4.34
2341 2608 6.579666 TGTAGGACTAGTGTCAAATAACGT 57.420 37.500 0.00 0.00 44.61 3.99
2342 2609 9.745880 ATAATGTAGGACTAGTGTCAAATAACG 57.254 33.333 0.00 0.00 44.61 3.18
2345 2612 8.647796 CCCATAATGTAGGACTAGTGTCAAATA 58.352 37.037 0.00 0.00 44.61 1.40
2346 2613 7.347222 TCCCATAATGTAGGACTAGTGTCAAAT 59.653 37.037 0.00 0.00 44.61 2.32
2347 2614 6.670464 TCCCATAATGTAGGACTAGTGTCAAA 59.330 38.462 0.00 0.00 44.61 2.69
2348 2615 6.097839 GTCCCATAATGTAGGACTAGTGTCAA 59.902 42.308 0.00 0.00 45.49 3.18
2349 2616 5.597182 GTCCCATAATGTAGGACTAGTGTCA 59.403 44.000 0.00 0.00 45.49 3.58
2350 2617 5.278364 CGTCCCATAATGTAGGACTAGTGTC 60.278 48.000 0.00 0.00 46.53 3.67
2351 2618 4.583489 CGTCCCATAATGTAGGACTAGTGT 59.417 45.833 0.00 0.00 46.53 3.55
2352 2619 4.022242 CCGTCCCATAATGTAGGACTAGTG 60.022 50.000 0.00 0.00 46.53 2.74
2353 2620 4.141088 TCCGTCCCATAATGTAGGACTAGT 60.141 45.833 0.00 0.00 46.53 2.57
2354 2621 4.404640 TCCGTCCCATAATGTAGGACTAG 58.595 47.826 6.83 0.00 46.53 2.57
2355 2622 4.404640 CTCCGTCCCATAATGTAGGACTA 58.595 47.826 6.83 0.00 46.53 2.59
2356 2623 3.231818 CTCCGTCCCATAATGTAGGACT 58.768 50.000 6.83 0.00 46.53 3.85
2357 2624 2.299297 CCTCCGTCCCATAATGTAGGAC 59.701 54.545 0.00 0.00 45.49 3.85
2358 2625 2.605257 CCTCCGTCCCATAATGTAGGA 58.395 52.381 0.00 0.00 0.00 2.94
2359 2626 1.623811 CCCTCCGTCCCATAATGTAGG 59.376 57.143 0.00 0.00 0.00 3.18
2360 2627 2.563179 CTCCCTCCGTCCCATAATGTAG 59.437 54.545 0.00 0.00 0.00 2.74
2361 2628 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2362 2629 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2363 2630 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2364 2631 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
2365 2632 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
2366 2633 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
2367 2634 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
2368 2635 0.033405 CTTCTACTCCCTCCGTCCCA 60.033 60.000 0.00 0.00 0.00 4.37
2369 2636 0.756070 CCTTCTACTCCCTCCGTCCC 60.756 65.000 0.00 0.00 0.00 4.46
2370 2637 1.393487 GCCTTCTACTCCCTCCGTCC 61.393 65.000 0.00 0.00 0.00 4.79
2371 2638 0.683504 TGCCTTCTACTCCCTCCGTC 60.684 60.000 0.00 0.00 0.00 4.79
2372 2639 0.684805 CTGCCTTCTACTCCCTCCGT 60.685 60.000 0.00 0.00 0.00 4.69
2373 2640 0.395862 TCTGCCTTCTACTCCCTCCG 60.396 60.000 0.00 0.00 0.00 4.63
2374 2641 1.867363 TTCTGCCTTCTACTCCCTCC 58.133 55.000 0.00 0.00 0.00 4.30
2375 2642 2.567615 TGTTTCTGCCTTCTACTCCCTC 59.432 50.000 0.00 0.00 0.00 4.30
2376 2643 2.621070 TGTTTCTGCCTTCTACTCCCT 58.379 47.619 0.00 0.00 0.00 4.20
2377 2644 3.075148 GTTGTTTCTGCCTTCTACTCCC 58.925 50.000 0.00 0.00 0.00 4.30
2378 2645 3.740115 TGTTGTTTCTGCCTTCTACTCC 58.260 45.455 0.00 0.00 0.00 3.85
2379 2646 4.997395 TCATGTTGTTTCTGCCTTCTACTC 59.003 41.667 0.00 0.00 0.00 2.59
2380 2647 4.757149 GTCATGTTGTTTCTGCCTTCTACT 59.243 41.667 0.00 0.00 0.00 2.57
2381 2648 4.515191 TGTCATGTTGTTTCTGCCTTCTAC 59.485 41.667 0.00 0.00 0.00 2.59
2382 2649 4.713553 TGTCATGTTGTTTCTGCCTTCTA 58.286 39.130 0.00 0.00 0.00 2.10
2387 2654 1.336240 GGCTGTCATGTTGTTTCTGCC 60.336 52.381 0.00 0.00 36.38 4.85
2407 2674 6.415206 AGGATGATTATTTCCTGCCATTTG 57.585 37.500 0.00 0.00 40.88 2.32
2452 2719 2.908015 GCCACCTAGAATCCGGCA 59.092 61.111 0.00 0.00 42.50 5.69
2453 2720 1.227674 CTGCCACCTAGAATCCGGC 60.228 63.158 0.00 0.00 43.28 6.13
2455 2722 1.338136 ACCCTGCCACCTAGAATCCG 61.338 60.000 0.00 0.00 0.00 4.18
2478 2745 1.192428 ACCACCCTAGACGGATGTTC 58.808 55.000 0.00 0.00 33.16 3.18
2501 2768 4.394920 GGTGAGAAAAGGCGTCATAATTGA 59.605 41.667 0.00 0.00 0.00 2.57
2540 2807 1.271434 GGGGTTGAACAAGAGGGAGAC 60.271 57.143 0.00 0.00 0.00 3.36
2630 2901 3.520317 TGGTTACCCGTCCTGTGATTAAT 59.480 43.478 0.00 0.00 0.00 1.40
2634 2905 0.611714 GTGGTTACCCGTCCTGTGAT 59.388 55.000 0.00 0.00 0.00 3.06
2640 2911 0.392060 GTCCATGTGGTTACCCGTCC 60.392 60.000 0.00 0.00 36.34 4.79
2641 2912 0.322322 TGTCCATGTGGTTACCCGTC 59.678 55.000 0.00 0.00 36.34 4.79
2642 2913 0.035739 GTGTCCATGTGGTTACCCGT 59.964 55.000 0.00 0.00 36.34 5.28
2643 2914 0.675522 GGTGTCCATGTGGTTACCCG 60.676 60.000 0.00 0.00 36.76 5.28
2644 2915 0.696501 AGGTGTCCATGTGGTTACCC 59.303 55.000 17.59 7.41 40.54 3.69
2645 2916 2.579410 AAGGTGTCCATGTGGTTACC 57.421 50.000 15.06 15.06 40.22 2.85
2714 2990 2.331019 GAATGCCCGCGCCGTAATTT 62.331 55.000 0.00 0.00 0.00 1.82
2740 3016 4.112634 ACCAGTATGAGGCCAAGAAAAA 57.887 40.909 5.01 0.00 39.69 1.94
2799 3075 7.519488 CGATCTTTAAGTAGCGTGACCTACATA 60.519 40.741 11.83 4.04 40.07 2.29
2887 3163 7.535258 GCTGATTAAACATAAAGACATATGCCG 59.465 37.037 1.58 0.00 36.87 5.69
2915 3191 5.578727 CACCAAATACTAAGCTCTCACTGTC 59.421 44.000 0.00 0.00 0.00 3.51
2919 3195 5.086104 TCCACCAAATACTAAGCTCTCAC 57.914 43.478 0.00 0.00 0.00 3.51
2998 3274 7.429636 TCACAGCACTACCAAGTATTAAAAC 57.570 36.000 0.00 0.00 33.48 2.43
3007 3283 4.511527 AGATGAATCACAGCACTACCAAG 58.488 43.478 0.00 0.00 37.37 3.61
3033 3309 7.495934 GTGAATCACAGCACTACCAAGTATATT 59.504 37.037 8.74 0.00 32.31 1.28
3034 3310 6.986817 GTGAATCACAGCACTACCAAGTATAT 59.013 38.462 8.74 0.00 32.31 0.86
3035 3311 6.071051 TGTGAATCACAGCACTACCAAGTATA 60.071 38.462 12.63 0.00 39.62 1.47
3036 3312 5.178797 GTGAATCACAGCACTACCAAGTAT 58.821 41.667 8.74 0.00 32.31 2.12
3037 3313 4.039852 TGTGAATCACAGCACTACCAAGTA 59.960 41.667 12.63 0.00 39.62 2.24
3038 3314 3.181455 TGTGAATCACAGCACTACCAAGT 60.181 43.478 12.63 0.00 39.62 3.16
3039 3315 3.402110 TGTGAATCACAGCACTACCAAG 58.598 45.455 12.63 0.00 39.62 3.61
3040 3316 3.483808 TGTGAATCACAGCACTACCAA 57.516 42.857 12.63 0.00 39.62 3.67
3050 3326 9.330063 GATGTATCCTTTTATCTGTGAATCACA 57.670 33.333 15.88 15.88 42.45 3.58
3051 3327 8.778358 GGATGTATCCTTTTATCTGTGAATCAC 58.222 37.037 6.41 6.41 43.73 3.06
3052 3328 8.908786 GGATGTATCCTTTTATCTGTGAATCA 57.091 34.615 3.63 0.00 43.73 2.57
3074 3350 3.845781 ACCTAGCAAATCGACATGGAT 57.154 42.857 0.00 0.00 0.00 3.41
3078 3354 4.154195 GTGTTGAACCTAGCAAATCGACAT 59.846 41.667 0.00 0.00 38.20 3.06
3144 3420 7.148103 TGCTGCAACAATACAATAAATGCTCTA 60.148 33.333 0.00 0.00 33.66 2.43
3147 3423 5.722263 TGCTGCAACAATACAATAAATGCT 58.278 33.333 0.00 0.00 33.66 3.79
3148 3424 6.592798 ATGCTGCAACAATACAATAAATGC 57.407 33.333 6.36 0.00 0.00 3.56
3190 3466 9.880157 ACTATTAGCTTTGTAAAAATAGGACGA 57.120 29.630 12.52 0.00 35.43 4.20
3203 3479 7.497249 GGTGATTCATGAGACTATTAGCTTTGT 59.503 37.037 0.00 0.00 0.00 2.83
3208 3484 6.283694 TGTGGTGATTCATGAGACTATTAGC 58.716 40.000 0.00 0.00 0.00 3.09
3225 3501 9.562408 TTAGACACTGTTAAAATATTGTGGTGA 57.438 29.630 6.37 0.00 0.00 4.02
3231 3507 8.511321 TGCAGGTTAGACACTGTTAAAATATTG 58.489 33.333 0.00 0.00 37.07 1.90
3265 3545 8.162880 GCAAGCTATAAATTATACGTGCTGTAG 58.837 37.037 17.01 9.04 36.25 2.74
3269 3549 5.995282 TGGCAAGCTATAAATTATACGTGCT 59.005 36.000 20.16 12.64 33.06 4.40
3276 3556 8.787852 GCTTAGTTCTGGCAAGCTATAAATTAT 58.212 33.333 0.00 0.00 41.14 1.28
3278 3558 7.032377 GCTTAGTTCTGGCAAGCTATAAATT 57.968 36.000 0.00 0.00 41.14 1.82
3291 3571 4.154918 CACTTTGCCTTAGCTTAGTTCTGG 59.845 45.833 0.00 0.00 40.80 3.86
3294 3574 3.502211 TGCACTTTGCCTTAGCTTAGTTC 59.498 43.478 0.00 0.00 44.23 3.01
3327 3607 5.505819 GGCCAGTTTTTCTTACTCACACTTC 60.506 44.000 0.00 0.00 0.00 3.01
3335 3615 3.222603 CCTGTGGCCAGTTTTTCTTACT 58.777 45.455 5.11 0.00 36.95 2.24
3355 3635 3.658757 TTTGCTAAATCTTGCCACACC 57.341 42.857 0.00 0.00 0.00 4.16
3357 3637 8.147058 TCTAAATTTTTGCTAAATCTTGCCACA 58.853 29.630 0.00 0.00 0.00 4.17
3398 3678 6.884295 TGCTGCACTTTAATATTCCTACAGTT 59.116 34.615 0.00 0.00 0.00 3.16
3459 3739 1.544825 AAGCTTAGGCGAGCCACAGA 61.545 55.000 17.18 0.00 43.74 3.41
3462 3742 0.530870 CCTAAGCTTAGGCGAGCCAC 60.531 60.000 33.96 2.80 43.43 5.01
3476 3756 2.098117 GCCACAGTTTGCTATGCCTAAG 59.902 50.000 0.00 0.00 0.00 2.18
3482 3762 0.097674 GCGAGCCACAGTTTGCTATG 59.902 55.000 0.00 0.00 38.11 2.23
3483 3763 1.026718 GGCGAGCCACAGTTTGCTAT 61.027 55.000 9.58 0.00 38.11 2.97
3484 3764 1.671054 GGCGAGCCACAGTTTGCTA 60.671 57.895 9.58 0.00 38.11 3.49
3485 3765 2.111999 TAGGCGAGCCACAGTTTGCT 62.112 55.000 17.18 0.00 41.42 3.91
3486 3766 1.234615 TTAGGCGAGCCACAGTTTGC 61.235 55.000 17.18 0.00 38.92 3.68
3487 3767 0.798776 CTTAGGCGAGCCACAGTTTG 59.201 55.000 17.18 0.00 38.92 2.93
3488 3768 0.955919 GCTTAGGCGAGCCACAGTTT 60.956 55.000 17.18 0.00 38.92 2.66
3489 3769 1.376037 GCTTAGGCGAGCCACAGTT 60.376 57.895 17.18 0.00 38.92 3.16
3490 3770 1.831652 AAGCTTAGGCGAGCCACAGT 61.832 55.000 17.18 0.00 43.74 3.55
3491 3771 0.175760 TAAGCTTAGGCGAGCCACAG 59.824 55.000 17.18 11.94 43.74 3.66
3492 3772 0.175760 CTAAGCTTAGGCGAGCCACA 59.824 55.000 23.48 0.31 43.74 4.17
3493 3773 0.530870 CCTAAGCTTAGGCGAGCCAC 60.531 60.000 33.96 2.80 43.43 5.01
3494 3774 1.823295 CCTAAGCTTAGGCGAGCCA 59.177 57.895 33.96 0.00 43.43 4.75
3495 3775 4.760757 CCTAAGCTTAGGCGAGCC 57.239 61.111 33.96 5.89 43.43 4.70
3502 3782 4.878397 ACAGTTTGCTATGCCTAAGCTTAG 59.122 41.667 24.11 24.11 45.23 2.18
3503 3783 4.635765 CACAGTTTGCTATGCCTAAGCTTA 59.364 41.667 5.94 5.94 40.73 3.09
3504 3784 3.441572 CACAGTTTGCTATGCCTAAGCTT 59.558 43.478 3.48 3.48 40.73 3.74
3505 3785 3.012518 CACAGTTTGCTATGCCTAAGCT 58.987 45.455 4.03 0.00 40.73 3.74
3506 3786 2.098117 CCACAGTTTGCTATGCCTAAGC 59.902 50.000 0.00 0.00 40.50 3.09
3507 3787 2.098117 GCCACAGTTTGCTATGCCTAAG 59.902 50.000 0.00 0.00 0.00 2.18
3508 3788 2.091541 GCCACAGTTTGCTATGCCTAA 58.908 47.619 0.00 0.00 0.00 2.69
3509 3789 1.281867 AGCCACAGTTTGCTATGCCTA 59.718 47.619 0.00 0.00 35.69 3.93
3510 3790 0.038744 AGCCACAGTTTGCTATGCCT 59.961 50.000 0.00 0.00 35.69 4.75
3511 3791 0.171903 CAGCCACAGTTTGCTATGCC 59.828 55.000 0.00 0.00 35.69 4.40
3512 3792 0.171903 CCAGCCACAGTTTGCTATGC 59.828 55.000 0.00 0.00 35.69 3.14
3536 3816 3.257873 TGATGTAACCAAGGGCATTTGTG 59.742 43.478 0.00 0.00 0.00 3.33
3537 3817 3.505386 TGATGTAACCAAGGGCATTTGT 58.495 40.909 0.00 0.00 0.00 2.83
3540 3820 5.760484 AAAATGATGTAACCAAGGGCATT 57.240 34.783 0.00 0.00 0.00 3.56
3541 3821 5.490159 CAAAAATGATGTAACCAAGGGCAT 58.510 37.500 0.00 0.00 0.00 4.40
3555 3835 7.602644 GCATATGCTCAATGATCCAAAAATGAT 59.397 33.333 20.64 0.00 38.21 2.45
3599 3879 3.259374 TCCAGAAAGACAGGCTAAGACAG 59.741 47.826 0.00 0.00 0.00 3.51
3601 3881 3.855858 CTCCAGAAAGACAGGCTAAGAC 58.144 50.000 0.00 0.00 0.00 3.01
3603 3883 2.235898 AGCTCCAGAAAGACAGGCTAAG 59.764 50.000 0.00 0.00 0.00 2.18
3604 3884 2.234908 GAGCTCCAGAAAGACAGGCTAA 59.765 50.000 0.87 0.00 0.00 3.09
3606 3886 0.612744 GAGCTCCAGAAAGACAGGCT 59.387 55.000 0.87 0.00 0.00 4.58
3607 3887 0.322975 TGAGCTCCAGAAAGACAGGC 59.677 55.000 12.15 0.00 0.00 4.85
3608 3888 2.847327 TTGAGCTCCAGAAAGACAGG 57.153 50.000 12.15 0.00 0.00 4.00
3609 3889 5.353678 CCTATTTTGAGCTCCAGAAAGACAG 59.646 44.000 12.15 8.27 0.00 3.51
3610 3890 5.248640 CCTATTTTGAGCTCCAGAAAGACA 58.751 41.667 12.15 0.00 0.00 3.41
3611 3891 4.095632 GCCTATTTTGAGCTCCAGAAAGAC 59.904 45.833 12.15 0.00 0.00 3.01
3613 3893 4.012374 TGCCTATTTTGAGCTCCAGAAAG 58.988 43.478 12.15 3.47 0.00 2.62
3614 3894 4.012374 CTGCCTATTTTGAGCTCCAGAAA 58.988 43.478 12.15 10.08 0.00 2.52
3615 3895 3.009473 ACTGCCTATTTTGAGCTCCAGAA 59.991 43.478 12.15 3.58 0.00 3.02
3616 3896 2.573462 ACTGCCTATTTTGAGCTCCAGA 59.427 45.455 12.15 0.00 0.00 3.86
3617 3897 2.681848 CACTGCCTATTTTGAGCTCCAG 59.318 50.000 12.15 10.75 0.00 3.86
3618 3898 2.305635 TCACTGCCTATTTTGAGCTCCA 59.694 45.455 12.15 0.00 0.00 3.86
3619 3899 2.991250 TCACTGCCTATTTTGAGCTCC 58.009 47.619 12.15 0.00 0.00 4.70
3620 3900 3.753272 TGTTCACTGCCTATTTTGAGCTC 59.247 43.478 6.82 6.82 0.00 4.09
3621 3901 3.754965 TGTTCACTGCCTATTTTGAGCT 58.245 40.909 0.00 0.00 0.00 4.09
3622 3902 3.671702 GCTGTTCACTGCCTATTTTGAGC 60.672 47.826 0.00 0.00 35.17 4.26
3623 3903 3.755378 AGCTGTTCACTGCCTATTTTGAG 59.245 43.478 5.29 0.00 41.03 3.02
3624 3904 3.754965 AGCTGTTCACTGCCTATTTTGA 58.245 40.909 5.29 0.00 41.03 2.69
3625 3905 4.510038 AAGCTGTTCACTGCCTATTTTG 57.490 40.909 5.29 0.00 41.03 2.44
3626 3906 5.048013 GGTTAAGCTGTTCACTGCCTATTTT 60.048 40.000 5.29 0.00 41.03 1.82
3627 3907 4.459337 GGTTAAGCTGTTCACTGCCTATTT 59.541 41.667 5.29 0.00 41.03 1.40
3628 3908 4.010349 GGTTAAGCTGTTCACTGCCTATT 58.990 43.478 5.29 0.00 41.03 1.73
3629 3909 3.610911 GGTTAAGCTGTTCACTGCCTAT 58.389 45.455 5.29 0.00 41.03 2.57
3630 3910 2.290071 GGGTTAAGCTGTTCACTGCCTA 60.290 50.000 4.41 0.00 41.03 3.93
3631 3911 1.545651 GGGTTAAGCTGTTCACTGCCT 60.546 52.381 4.41 0.00 41.03 4.75
3632 3912 0.881796 GGGTTAAGCTGTTCACTGCC 59.118 55.000 4.41 0.00 41.03 4.85
3633 3913 1.537202 CTGGGTTAAGCTGTTCACTGC 59.463 52.381 4.41 0.74 40.53 4.40
3634 3914 1.537202 GCTGGGTTAAGCTGTTCACTG 59.463 52.381 4.41 0.00 40.20 3.66
3635 3915 1.897560 GCTGGGTTAAGCTGTTCACT 58.102 50.000 4.41 0.00 40.20 3.41
3643 3923 1.555533 ACTAGTCCAGCTGGGTTAAGC 59.444 52.381 32.23 14.94 43.88 3.09
3644 3924 3.983044 AACTAGTCCAGCTGGGTTAAG 57.017 47.619 32.23 23.84 38.11 1.85
3645 3925 4.717279 AAAACTAGTCCAGCTGGGTTAA 57.283 40.909 32.23 10.66 34.32 2.01
3646 3926 4.141344 ACAAAAACTAGTCCAGCTGGGTTA 60.141 41.667 32.23 21.78 34.32 2.85
3647 3927 3.222603 CAAAAACTAGTCCAGCTGGGTT 58.777 45.455 32.23 23.64 37.18 4.11
3648 3928 2.174854 ACAAAAACTAGTCCAGCTGGGT 59.825 45.455 32.23 21.61 38.11 4.51
3649 3929 2.814336 GACAAAAACTAGTCCAGCTGGG 59.186 50.000 32.23 18.44 35.41 4.45
3650 3930 3.499918 CAGACAAAAACTAGTCCAGCTGG 59.500 47.826 27.87 27.87 35.38 4.85
3651 3931 3.058639 GCAGACAAAAACTAGTCCAGCTG 60.059 47.826 6.78 6.78 35.04 4.24
3652 3932 3.142174 GCAGACAAAAACTAGTCCAGCT 58.858 45.455 0.00 0.00 35.04 4.24
3653 3933 3.142174 AGCAGACAAAAACTAGTCCAGC 58.858 45.455 0.00 0.00 36.88 4.85
3654 3934 4.214332 GGAAGCAGACAAAAACTAGTCCAG 59.786 45.833 0.00 0.00 35.38 3.86
3655 3935 4.134563 GGAAGCAGACAAAAACTAGTCCA 58.865 43.478 0.00 0.00 35.38 4.02
3656 3936 3.502595 GGGAAGCAGACAAAAACTAGTCC 59.497 47.826 0.00 0.00 35.38 3.85
3657 3937 4.134563 TGGGAAGCAGACAAAAACTAGTC 58.865 43.478 0.00 0.00 35.02 2.59
3665 3945 2.727123 TCTGTTGGGAAGCAGACAAA 57.273 45.000 0.00 0.00 36.89 2.83
3715 3996 5.304686 ACAACAATAGAAGTGAACAGGGA 57.695 39.130 0.00 0.00 0.00 4.20
3718 3999 9.651718 GTCTTAAACAACAATAGAAGTGAACAG 57.348 33.333 0.00 0.00 0.00 3.16
3724 4005 9.561069 ACTGATGTCTTAAACAACAATAGAAGT 57.439 29.630 0.00 0.00 39.81 3.01
3725 4006 9.817365 CACTGATGTCTTAAACAACAATAGAAG 57.183 33.333 0.00 0.00 39.81 2.85
3740 4021 3.452755 TCGACAACACACTGATGTCTT 57.547 42.857 9.96 0.00 44.70 3.01
3747 4028 0.105964 TCCCCTTCGACAACACACTG 59.894 55.000 0.00 0.00 0.00 3.66
3751 4034 3.435671 CAGTAATTCCCCTTCGACAACAC 59.564 47.826 0.00 0.00 0.00 3.32
3799 4082 3.817647 GCTGTCAGTTCTCCATGACTTTT 59.182 43.478 0.93 0.00 44.90 2.27
3825 4108 0.750850 GCATCAATGGCCAAGCAGAT 59.249 50.000 10.96 8.19 0.00 2.90
3835 4118 1.671979 ACATGAGACGGCATCAATGG 58.328 50.000 0.00 0.00 31.18 3.16
3846 4129 5.082059 CGAACAAAGTATGCAACATGAGAC 58.918 41.667 0.00 0.00 0.00 3.36
3884 4167 8.450578 AGAAGTTTAATCTCAACATTGTCACA 57.549 30.769 0.00 0.00 0.00 3.58
3988 4281 8.746530 AGATACGACCTACTTATCAAACTTGAA 58.253 33.333 0.00 0.00 41.13 2.69
4040 4333 7.495606 TCCTACAACATGCTCAGTAACATAATG 59.504 37.037 0.00 0.00 0.00 1.90
4052 4429 4.214971 CAGGCATAATCCTACAACATGCTC 59.785 45.833 5.00 0.00 41.33 4.26
4061 4438 5.551233 TGACATTAGCAGGCATAATCCTAC 58.449 41.667 0.00 0.00 33.95 3.18
4070 4447 3.888323 TCAACTTTTGACATTAGCAGGCA 59.112 39.130 0.00 0.00 34.08 4.75
4083 4460 9.672086 TTACGGTAAGAATTCAATCAACTTTTG 57.328 29.630 8.44 0.00 0.00 2.44
4098 4475 7.284034 CCTCCACTAGACTATTTACGGTAAGAA 59.716 40.741 0.00 0.00 0.00 2.52
4145 4529 7.011109 AGGACGACAATTTACATGTATTACTGC 59.989 37.037 6.36 0.00 0.00 4.40
4160 4544 3.951680 ACCTTGACAAAAGGACGACAATT 59.048 39.130 11.02 0.00 39.81 2.32
4167 4551 3.630312 TGTTGCTACCTTGACAAAAGGAC 59.370 43.478 11.02 0.00 39.81 3.85
4169 4553 4.853924 ATGTTGCTACCTTGACAAAAGG 57.146 40.909 2.55 2.55 43.05 3.11
4193 4577 6.300354 ACTGCTCTATACAACACACAAAAC 57.700 37.500 0.00 0.00 0.00 2.43
4203 4587 8.359642 AGAAAAATGCAAAACTGCTCTATACAA 58.640 29.630 0.00 0.00 35.49 2.41
4245 4630 7.333323 TGATCAAGAGATGAACAAGCATAAGA 58.667 34.615 0.00 0.00 42.54 2.10
4321 4706 2.683362 TCTGCATGTCGAGTACCACTAG 59.317 50.000 0.00 0.00 0.00 2.57
4407 4792 5.391310 GCATATAGCATTTCTGAATGTCCGG 60.391 44.000 0.00 0.00 43.67 5.14
4564 4949 6.944862 ACTTTACTGGCATCTTTCTCAGAAAT 59.055 34.615 0.00 0.00 34.16 2.17
4583 4968 2.000447 CAGCAGGCGTTAGGACTTTAC 59.000 52.381 0.00 0.00 0.00 2.01
4698 5083 5.770162 CCTACTCCCTTTGAACTGAAACAAT 59.230 40.000 0.00 0.00 0.00 2.71
4734 5119 6.313744 ACCAAAACTCCTAATTTTCTCACG 57.686 37.500 0.00 0.00 0.00 4.35
4842 5227 9.460019 TCATTAGTTGATATGAATTCCAACACA 57.540 29.630 20.38 11.04 40.77 3.72
4967 5363 1.681538 TGGCTTGCGAGTGGTAAAAA 58.318 45.000 2.14 0.00 0.00 1.94
4974 5370 4.025396 CAGAAGTATATTGGCTTGCGAGTG 60.025 45.833 2.14 0.00 0.00 3.51
4980 5376 9.132521 CTTGAAAAACAGAAGTATATTGGCTTG 57.867 33.333 0.00 0.00 0.00 4.01
4992 5388 4.644685 TGACCTTCCCTTGAAAAACAGAAG 59.355 41.667 0.00 0.00 32.02 2.85
4995 5391 5.163416 ACAATGACCTTCCCTTGAAAAACAG 60.163 40.000 0.00 0.00 0.00 3.16
5047 5443 6.371548 ACGAGTGTAATTGTGAATGCTGTAAT 59.628 34.615 0.00 0.00 0.00 1.89
5071 5467 5.066505 CCTTGTAACTGGATGGCTTTATCAC 59.933 44.000 0.00 0.00 0.00 3.06
5233 5644 1.844687 AGGAAGAATGGGCTTGCTTC 58.155 50.000 0.00 0.00 42.88 3.86
5273 5684 2.989840 CAGACACGAATGAGGTCTTCAC 59.010 50.000 0.00 0.00 39.75 3.18
5414 5840 4.518970 GTGTGTGAGAACATGTTACCCAAT 59.481 41.667 11.95 0.00 31.49 3.16
5429 5903 9.891828 TGCAAATTTAGTATTAAAGTGTGTGAG 57.108 29.630 0.00 0.00 32.58 3.51
5431 5905 9.457110 TGTGCAAATTTAGTATTAAAGTGTGTG 57.543 29.630 0.00 0.00 32.58 3.82
5468 5942 2.061773 CACTTGACTGTGCTCTTACCG 58.938 52.381 0.00 0.00 0.00 4.02
5479 5953 1.318576 GGGTTTGGGACACTTGACTG 58.681 55.000 0.00 0.00 39.29 3.51
5515 5989 0.321653 AGTCAATGACCAGGCCGTTC 60.322 55.000 10.12 0.00 32.18 3.95
5516 5990 0.606401 CAGTCAATGACCAGGCCGTT 60.606 55.000 10.12 0.00 32.18 4.44
5517 5991 1.003355 CAGTCAATGACCAGGCCGT 60.003 57.895 10.12 0.00 32.18 5.68
5518 5992 1.746615 CCAGTCAATGACCAGGCCG 60.747 63.158 10.12 0.00 32.18 6.13
5519 5993 0.678048 GACCAGTCAATGACCAGGCC 60.678 60.000 18.60 7.52 33.40 5.19
5520 5994 0.036732 TGACCAGTCAATGACCAGGC 59.963 55.000 18.60 10.11 36.53 4.85
5521 5995 1.072173 TGTGACCAGTCAATGACCAGG 59.928 52.381 17.50 17.50 41.85 4.45
5524 5998 3.632145 ACTTTTGTGACCAGTCAATGACC 59.368 43.478 10.12 0.00 41.85 4.02
5534 6008 3.054728 TCTGAGTTGGACTTTTGTGACCA 60.055 43.478 0.00 0.00 0.00 4.02
5545 6019 0.972883 AGAGCCAGTCTGAGTTGGAC 59.027 55.000 11.27 5.44 36.55 4.02
5564 6038 2.871633 GGACGTTTGAGACCCGTTTAAA 59.128 45.455 0.00 0.00 34.51 1.52
5574 6048 0.313043 GTCAGTCCGGACGTTTGAGA 59.687 55.000 28.26 16.75 36.20 3.27
5588 6062 1.063190 TGGATATGAGGGACGGTCAGT 60.063 52.381 10.76 0.00 0.00 3.41
5589 6063 1.615883 CTGGATATGAGGGACGGTCAG 59.384 57.143 10.76 0.00 0.00 3.51
5602 6079 2.041620 ACCCCATATTTGCGCTGGATAT 59.958 45.455 13.79 9.07 31.38 1.63
5611 6088 4.536765 CCCTATATCCACCCCATATTTGC 58.463 47.826 0.00 0.00 0.00 3.68
5623 6100 3.000819 CCGGGCGCCCTATATCCA 61.001 66.667 41.01 0.00 0.00 3.41
5650 6127 2.022129 GCTGTCAAGTCCGACGTGG 61.022 63.158 13.56 0.00 38.84 4.94
5661 6138 0.844661 ATGGTGGGTAGGGCTGTCAA 60.845 55.000 0.00 0.00 0.00 3.18
5676 6153 3.790126 AGGGTTTGAGGCAAATTATGGT 58.210 40.909 0.00 0.00 35.74 3.55
5677 6154 4.383010 GGAAGGGTTTGAGGCAAATTATGG 60.383 45.833 0.00 0.00 35.74 2.74
5679 6156 4.687976 AGGAAGGGTTTGAGGCAAATTAT 58.312 39.130 0.00 0.00 35.74 1.28
5680 6157 4.086457 GAGGAAGGGTTTGAGGCAAATTA 58.914 43.478 0.00 0.00 35.74 1.40
5681 6158 2.899900 GAGGAAGGGTTTGAGGCAAATT 59.100 45.455 0.00 0.00 35.74 1.82
5683 6160 1.480498 GGAGGAAGGGTTTGAGGCAAA 60.480 52.381 0.00 0.00 0.00 3.68
5686 6163 0.034960 GAGGAGGAAGGGTTTGAGGC 60.035 60.000 0.00 0.00 0.00 4.70
5687 6164 0.621082 GGAGGAGGAAGGGTTTGAGG 59.379 60.000 0.00 0.00 0.00 3.86
5689 6166 1.198759 CGGGAGGAGGAAGGGTTTGA 61.199 60.000 0.00 0.00 0.00 2.69
5690 6167 1.299976 CGGGAGGAGGAAGGGTTTG 59.700 63.158 0.00 0.00 0.00 2.93
5691 6168 2.603652 GCGGGAGGAGGAAGGGTTT 61.604 63.158 0.00 0.00 0.00 3.27
5769 6255 1.113517 ATGGATCGGGACCGGTAGTG 61.114 60.000 7.34 0.00 40.25 2.74
5772 6258 1.900016 CGATGGATCGGGACCGGTA 60.900 63.158 7.34 0.00 45.93 4.02
5787 6273 0.467474 TGGACGACATCTAGGGCGAT 60.467 55.000 0.00 0.00 0.00 4.58
5788 6274 0.681887 TTGGACGACATCTAGGGCGA 60.682 55.000 0.00 0.00 0.00 5.54
5847 6333 3.834799 GAAGGGACGCCGACGGAT 61.835 66.667 20.50 4.02 46.04 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.