Multiple sequence alignment - TraesCS2D01G273800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G273800 chr2D 100.000 2954 0 0 1923 4876 340693400 340690447 0.000000e+00 5456.0
1 TraesCS2D01G273800 chr2D 100.000 1509 0 0 1 1509 340695322 340693814 0.000000e+00 2787.0
2 TraesCS2D01G273800 chr2D 90.885 746 63 3 4135 4876 506158060 506157316 0.000000e+00 996.0
3 TraesCS2D01G273800 chr2D 90.726 744 69 0 4133 4876 340607594 340606851 0.000000e+00 992.0
4 TraesCS2D01G273800 chr2D 89.812 746 70 6 4133 4876 250379703 250380444 0.000000e+00 952.0
5 TraesCS2D01G273800 chr2D 84.804 408 49 12 1105 1506 143494388 143494788 9.830000e-107 398.0
6 TraesCS2D01G273800 chr6B 89.313 2124 192 24 1923 4024 593622474 593624584 0.000000e+00 2632.0
7 TraesCS2D01G273800 chr4D 88.036 2123 213 29 1923 4023 439177726 439179829 0.000000e+00 2475.0
8 TraesCS2D01G273800 chr4D 92.466 1553 95 10 1923 3463 11877302 11875760 0.000000e+00 2200.0
9 TraesCS2D01G273800 chr4D 90.201 745 67 6 4135 4876 211884943 211885684 0.000000e+00 966.0
10 TraesCS2D01G273800 chr4D 89.558 747 71 7 4133 4875 403953210 403953953 0.000000e+00 941.0
11 TraesCS2D01G273800 chr4D 89.502 743 76 2 4135 4876 222808248 222807507 0.000000e+00 939.0
12 TraesCS2D01G273800 chr4D 91.057 615 49 6 3416 4027 75773250 75772639 0.000000e+00 826.0
13 TraesCS2D01G273800 chr4D 81.250 304 44 8 1203 1499 499251663 499251366 2.930000e-57 233.0
14 TraesCS2D01G273800 chr7D 87.494 2095 207 34 1925 3991 554901412 554899345 0.000000e+00 2366.0
15 TraesCS2D01G273800 chr7D 93.226 1550 94 9 1923 3463 616482828 616484375 0.000000e+00 2270.0
16 TraesCS2D01G273800 chr7D 91.775 1544 106 12 1923 3449 182612455 182610916 0.000000e+00 2128.0
17 TraesCS2D01G273800 chr7D 87.931 348 40 1 1104 1449 412230060 412230407 4.540000e-110 409.0
18 TraesCS2D01G273800 chr7D 83.911 404 58 5 1105 1506 183752588 183752986 3.560000e-101 379.0
19 TraesCS2D01G273800 chr7D 83.538 407 53 10 1105 1505 104637385 104636987 7.710000e-98 368.0
20 TraesCS2D01G273800 chr4B 89.477 1853 156 18 1923 3757 517367358 517365527 0.000000e+00 2305.0
21 TraesCS2D01G273800 chr4B 83.807 352 52 3 1103 1449 21314363 21314012 3.640000e-86 329.0
22 TraesCS2D01G273800 chr6D 91.822 1553 104 10 1923 3463 463788663 463787122 0.000000e+00 2143.0
23 TraesCS2D01G273800 chr6D 90.201 745 68 5 4133 4876 222993186 222992446 0.000000e+00 966.0
24 TraesCS2D01G273800 chr6D 90.850 612 50 6 3418 4026 463787134 463786526 0.000000e+00 815.0
25 TraesCS2D01G273800 chr6D 88.432 389 39 5 1120 1506 463789117 463788733 9.560000e-127 464.0
26 TraesCS2D01G273800 chr6D 82.185 421 55 10 1104 1506 302631798 302631380 1.300000e-90 344.0
27 TraesCS2D01G273800 chr6D 79.951 409 53 16 1105 1506 408218476 408218090 1.730000e-69 274.0
28 TraesCS2D01G273800 chr7A 91.629 1553 107 15 1923 3463 12127041 12128582 0.000000e+00 2126.0
29 TraesCS2D01G273800 chr7A 87.379 412 45 7 1105 1509 56836297 56836708 2.660000e-127 466.0
30 TraesCS2D01G273800 chr2B 92.770 899 42 7 1 894 406541046 406540166 0.000000e+00 1279.0
31 TraesCS2D01G273800 chr2B 86.467 702 61 13 1923 2610 375535320 375534639 0.000000e+00 739.0
32 TraesCS2D01G273800 chr2B 90.909 66 6 0 974 1039 406538357 406538292 6.720000e-14 89.8
33 TraesCS2D01G273800 chr2A 90.049 814 52 14 1 806 450535701 450536493 0.000000e+00 1027.0
34 TraesCS2D01G273800 chr2A 89.441 644 58 8 3387 4026 12173778 12174415 0.000000e+00 804.0
35 TraesCS2D01G273800 chr3A 89.933 745 71 3 4133 4876 76135407 76134666 0.000000e+00 957.0
36 TraesCS2D01G273800 chr1D 89.678 746 72 5 4133 4876 175950401 175951143 0.000000e+00 946.0
37 TraesCS2D01G273800 chr1D 92.574 606 38 5 3419 4022 174776291 174775691 0.000000e+00 863.0
38 TraesCS2D01G273800 chr1D 88.366 404 40 5 1105 1506 269992007 269991609 3.410000e-131 479.0
39 TraesCS2D01G273800 chr1D 86.139 404 51 4 1110 1509 174778267 174777865 9.700000e-117 431.0
40 TraesCS2D01G273800 chr1D 85.401 411 44 9 1104 1505 467923903 467923500 3.510000e-111 412.0
41 TraesCS2D01G273800 chr1D 84.834 422 48 9 1102 1509 217012151 217011732 1.260000e-110 411.0
42 TraesCS2D01G273800 chr1D 87.320 347 42 2 1105 1449 493226518 493226864 3.540000e-106 396.0
43 TraesCS2D01G273800 chr1D 82.734 417 52 11 1105 1506 257428852 257428441 2.160000e-93 353.0
44 TraesCS2D01G273800 chr1D 81.401 414 57 10 1105 1506 351507495 351507900 2.190000e-83 320.0
45 TraesCS2D01G273800 chr1D 81.401 414 48 11 1108 1506 348726246 348725847 1.320000e-80 311.0
46 TraesCS2D01G273800 chr1D 84.262 305 31 10 1216 1505 484182406 484182104 1.030000e-71 281.0
47 TraesCS2D01G273800 chr1D 79.666 359 44 13 1149 1506 125089195 125088865 1.060000e-56 231.0
48 TraesCS2D01G273800 chr1D 90.909 165 13 2 1339 1503 232154959 232155121 2.280000e-53 220.0
49 TraesCS2D01G273800 chr5D 86.835 395 42 5 1120 1504 217057156 217057550 2.700000e-117 433.0
50 TraesCS2D01G273800 chr5D 88.136 354 33 8 1160 1509 520021587 520021239 3.510000e-111 412.0
51 TraesCS2D01G273800 chr5D 84.450 418 42 14 1105 1506 108339366 108339776 1.650000e-104 390.0
52 TraesCS2D01G273800 chr5D 84.198 405 55 7 1105 1506 432509419 432509817 7.660000e-103 385.0
53 TraesCS2D01G273800 chr1A 85.679 405 46 9 1105 1506 281653358 281653753 2.710000e-112 416.0
54 TraesCS2D01G273800 chr3D 85.396 404 52 5 1104 1506 26441589 26441986 3.510000e-111 412.0
55 TraesCS2D01G273800 chr3D 83.704 405 54 8 1104 1506 547930064 547930458 5.960000e-99 372.0
56 TraesCS2D01G273800 chr1B 81.971 416 60 9 1105 1509 636261493 636261082 6.050000e-89 339.0
57 TraesCS2D01G273800 chr1B 80.469 384 53 14 1126 1503 308912583 308912950 1.730000e-69 274.0
58 TraesCS2D01G273800 chrUn 80.806 422 50 15 1104 1506 359551135 359551544 7.930000e-78 302.0
59 TraesCS2D01G273800 chrUn 80.630 413 56 14 1111 1504 82729027 82728620 1.030000e-76 298.0
60 TraesCS2D01G273800 chrUn 80.630 413 56 14 1111 1504 328865940 328865533 1.030000e-76 298.0
61 TraesCS2D01G273800 chrUn 80.288 416 52 17 1098 1500 217850496 217850894 2.220000e-73 287.0
62 TraesCS2D01G273800 chrUn 80.288 416 52 17 1098 1500 331471508 331471906 2.220000e-73 287.0
63 TraesCS2D01G273800 chrUn 81.053 380 43 14 1145 1506 432491628 432491260 4.810000e-70 276.0
64 TraesCS2D01G273800 chrUn 79.854 412 53 14 1104 1502 401892404 401892010 1.730000e-69 274.0
65 TraesCS2D01G273800 chrUn 80.731 301 32 14 1228 1506 305359070 305359366 1.380000e-50 211.0
66 TraesCS2D01G273800 chrUn 82.051 234 23 8 1289 1506 393406072 393406302 1.080000e-41 182.0
67 TraesCS2D01G273800 chrUn 85.906 149 10 7 1367 1508 295917904 295918048 1.090000e-31 148.0
68 TraesCS2D01G273800 chrUn 85.906 149 10 7 1367 1508 326795414 326795270 1.090000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G273800 chr2D 340690447 340695322 4875 True 4121.500000 5456 100.0000 1 4876 2 chr2D.!!$R3 4875
1 TraesCS2D01G273800 chr2D 506157316 506158060 744 True 996.000000 996 90.8850 4135 4876 1 chr2D.!!$R2 741
2 TraesCS2D01G273800 chr2D 340606851 340607594 743 True 992.000000 992 90.7260 4133 4876 1 chr2D.!!$R1 743
3 TraesCS2D01G273800 chr2D 250379703 250380444 741 False 952.000000 952 89.8120 4133 4876 1 chr2D.!!$F2 743
4 TraesCS2D01G273800 chr6B 593622474 593624584 2110 False 2632.000000 2632 89.3130 1923 4024 1 chr6B.!!$F1 2101
5 TraesCS2D01G273800 chr4D 439177726 439179829 2103 False 2475.000000 2475 88.0360 1923 4023 1 chr4D.!!$F3 2100
6 TraesCS2D01G273800 chr4D 11875760 11877302 1542 True 2200.000000 2200 92.4660 1923 3463 1 chr4D.!!$R1 1540
7 TraesCS2D01G273800 chr4D 211884943 211885684 741 False 966.000000 966 90.2010 4135 4876 1 chr4D.!!$F1 741
8 TraesCS2D01G273800 chr4D 403953210 403953953 743 False 941.000000 941 89.5580 4133 4875 1 chr4D.!!$F2 742
9 TraesCS2D01G273800 chr4D 222807507 222808248 741 True 939.000000 939 89.5020 4135 4876 1 chr4D.!!$R3 741
10 TraesCS2D01G273800 chr4D 75772639 75773250 611 True 826.000000 826 91.0570 3416 4027 1 chr4D.!!$R2 611
11 TraesCS2D01G273800 chr7D 554899345 554901412 2067 True 2366.000000 2366 87.4940 1925 3991 1 chr7D.!!$R3 2066
12 TraesCS2D01G273800 chr7D 616482828 616484375 1547 False 2270.000000 2270 93.2260 1923 3463 1 chr7D.!!$F3 1540
13 TraesCS2D01G273800 chr7D 182610916 182612455 1539 True 2128.000000 2128 91.7750 1923 3449 1 chr7D.!!$R2 1526
14 TraesCS2D01G273800 chr4B 517365527 517367358 1831 True 2305.000000 2305 89.4770 1923 3757 1 chr4B.!!$R2 1834
15 TraesCS2D01G273800 chr6D 463786526 463789117 2591 True 1140.666667 2143 90.3680 1120 4026 3 chr6D.!!$R4 2906
16 TraesCS2D01G273800 chr6D 222992446 222993186 740 True 966.000000 966 90.2010 4133 4876 1 chr6D.!!$R1 743
17 TraesCS2D01G273800 chr7A 12127041 12128582 1541 False 2126.000000 2126 91.6290 1923 3463 1 chr7A.!!$F1 1540
18 TraesCS2D01G273800 chr2B 375534639 375535320 681 True 739.000000 739 86.4670 1923 2610 1 chr2B.!!$R1 687
19 TraesCS2D01G273800 chr2B 406538292 406541046 2754 True 684.400000 1279 91.8395 1 1039 2 chr2B.!!$R2 1038
20 TraesCS2D01G273800 chr2A 450535701 450536493 792 False 1027.000000 1027 90.0490 1 806 1 chr2A.!!$F2 805
21 TraesCS2D01G273800 chr2A 12173778 12174415 637 False 804.000000 804 89.4410 3387 4026 1 chr2A.!!$F1 639
22 TraesCS2D01G273800 chr3A 76134666 76135407 741 True 957.000000 957 89.9330 4133 4876 1 chr3A.!!$R1 743
23 TraesCS2D01G273800 chr1D 175950401 175951143 742 False 946.000000 946 89.6780 4133 4876 1 chr1D.!!$F1 743
24 TraesCS2D01G273800 chr1D 174775691 174778267 2576 True 647.000000 863 89.3565 1110 4022 2 chr1D.!!$R8 2912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 511 0.037447 GAGCAAGCAGGAGGTTCCTT 59.963 55.0 0.00 0.0 46.91 3.36 F
1012 1024 0.106719 CTTATCCAACCCGGTGCCAT 60.107 55.0 0.00 0.0 35.57 4.40 F
1456 1471 0.036952 CCTCGTCTGGCATGACAACT 60.037 55.0 1.11 0.0 36.82 3.16 F
2400 2448 0.450583 TCGACGAGGACTACATGCAC 59.549 55.0 0.00 0.0 0.00 4.57 F
3495 3611 0.182775 ACCAAGGCGAAAGAAGTGGT 59.817 50.0 0.00 0.0 35.71 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1395 0.244450 GTCGTCGTCCATGGTTGGTA 59.756 55.000 12.58 0.0 44.06 3.25 R
2731 2789 1.202758 TCCAATGTCTCGCCAACACTT 60.203 47.619 0.00 0.0 0.00 3.16 R
3319 3393 0.697658 TGTTCATCATGCCCTCCACA 59.302 50.000 0.00 0.0 0.00 4.17 R
3757 4443 0.319986 TCACCACACAATTCGCGCTA 60.320 50.000 5.56 0.0 0.00 4.26 R
4664 5841 0.035598 TACTTTAGGTGCTGCGCCAA 59.964 50.000 31.64 20.6 36.32 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 7.008447 GTGCGTTTTATGTGACAGTAAAAACAA 59.992 33.333 22.26 13.33 39.05 2.83
60 61 3.986277 AGAGCAAGCCAAATTTCAACAG 58.014 40.909 0.00 0.00 0.00 3.16
63 64 2.874086 GCAAGCCAAATTTCAACAGCTT 59.126 40.909 0.00 0.00 41.01 3.74
115 116 6.096001 GCTCACCATCCTTGAGAATGTAAAAT 59.904 38.462 3.53 0.00 42.81 1.82
244 251 8.004344 CGAACATTATTTGCTATTCCTAGAACG 58.996 37.037 0.00 0.00 0.00 3.95
284 296 7.129109 TCAAACGCAGAAGGATAAAAGTTAG 57.871 36.000 0.00 0.00 0.00 2.34
499 511 0.037447 GAGCAAGCAGGAGGTTCCTT 59.963 55.000 0.00 0.00 46.91 3.36
520 532 1.374947 GCTGTGGTACTGCTCCCAA 59.625 57.895 3.94 0.00 39.55 4.12
641 653 1.131126 CCGACACAACAGCATTCATCC 59.869 52.381 0.00 0.00 0.00 3.51
644 656 2.421424 GACACAACAGCATTCATCCTCC 59.579 50.000 0.00 0.00 0.00 4.30
645 657 1.399440 CACAACAGCATTCATCCTCCG 59.601 52.381 0.00 0.00 0.00 4.63
647 659 0.749454 AACAGCATTCATCCTCCGCC 60.749 55.000 0.00 0.00 0.00 6.13
648 660 2.109799 AGCATTCATCCTCCGCCG 59.890 61.111 0.00 0.00 0.00 6.46
649 661 3.654020 GCATTCATCCTCCGCCGC 61.654 66.667 0.00 0.00 0.00 6.53
650 662 2.974698 CATTCATCCTCCGCCGCC 60.975 66.667 0.00 0.00 0.00 6.13
730 742 1.000955 AGACGAGGCGGCTTTATATGG 59.999 52.381 14.76 0.00 46.07 2.74
771 783 2.941583 AAGGGGAAGGGGACAGCC 60.942 66.667 0.00 0.00 0.00 4.85
775 787 3.787001 GGAAGGGGACAGCCGGAG 61.787 72.222 5.05 0.00 33.83 4.63
788 800 4.356979 CGGAGGAGCAACCCTAGA 57.643 61.111 0.00 0.00 40.05 2.43
789 801 2.827715 CGGAGGAGCAACCCTAGAT 58.172 57.895 0.00 0.00 40.05 1.98
790 802 1.996798 CGGAGGAGCAACCCTAGATA 58.003 55.000 0.00 0.00 40.05 1.98
791 803 2.530701 CGGAGGAGCAACCCTAGATAT 58.469 52.381 0.00 0.00 40.05 1.63
792 804 2.232452 CGGAGGAGCAACCCTAGATATG 59.768 54.545 0.00 0.00 40.05 1.78
793 805 3.243724 GGAGGAGCAACCCTAGATATGT 58.756 50.000 0.00 0.00 40.05 2.29
794 806 3.648545 GGAGGAGCAACCCTAGATATGTT 59.351 47.826 0.00 0.00 40.05 2.71
795 807 4.103311 GGAGGAGCAACCCTAGATATGTTT 59.897 45.833 0.00 0.00 40.05 2.83
796 808 5.398012 GGAGGAGCAACCCTAGATATGTTTT 60.398 44.000 0.00 0.00 40.05 2.43
797 809 6.079712 AGGAGCAACCCTAGATATGTTTTT 57.920 37.500 0.00 0.00 40.05 1.94
798 810 7.208064 AGGAGCAACCCTAGATATGTTTTTA 57.792 36.000 0.00 0.00 40.05 1.52
799 811 7.816411 AGGAGCAACCCTAGATATGTTTTTAT 58.184 34.615 0.00 0.00 40.05 1.40
800 812 8.282256 AGGAGCAACCCTAGATATGTTTTTATT 58.718 33.333 0.00 0.00 40.05 1.40
801 813 8.914011 GGAGCAACCCTAGATATGTTTTTATTT 58.086 33.333 0.00 0.00 0.00 1.40
802 814 9.736023 GAGCAACCCTAGATATGTTTTTATTTG 57.264 33.333 0.00 0.00 0.00 2.32
803 815 8.695456 AGCAACCCTAGATATGTTTTTATTTGG 58.305 33.333 0.00 0.00 0.00 3.28
804 816 7.926018 GCAACCCTAGATATGTTTTTATTTGGG 59.074 37.037 0.00 0.00 36.06 4.12
805 817 8.421002 CAACCCTAGATATGTTTTTATTTGGGG 58.579 37.037 0.00 0.00 39.22 4.96
806 818 7.073208 ACCCTAGATATGTTTTTATTTGGGGG 58.927 38.462 7.88 0.00 38.24 5.40
807 819 7.073208 CCCTAGATATGTTTTTATTTGGGGGT 58.927 38.462 0.00 0.00 33.34 4.95
808 820 7.015195 CCCTAGATATGTTTTTATTTGGGGGTG 59.985 40.741 0.00 0.00 33.34 4.61
809 821 6.806668 AGATATGTTTTTATTTGGGGGTGG 57.193 37.500 0.00 0.00 0.00 4.61
810 822 5.665360 AGATATGTTTTTATTTGGGGGTGGG 59.335 40.000 0.00 0.00 0.00 4.61
811 823 3.346146 TGTTTTTATTTGGGGGTGGGA 57.654 42.857 0.00 0.00 0.00 4.37
812 824 3.665443 TGTTTTTATTTGGGGGTGGGAA 58.335 40.909 0.00 0.00 0.00 3.97
813 825 3.648545 TGTTTTTATTTGGGGGTGGGAAG 59.351 43.478 0.00 0.00 0.00 3.46
814 826 1.945580 TTTATTTGGGGGTGGGAAGC 58.054 50.000 0.00 0.00 0.00 3.86
815 827 1.089123 TTATTTGGGGGTGGGAAGCT 58.911 50.000 0.00 0.00 0.00 3.74
816 828 0.334676 TATTTGGGGGTGGGAAGCTG 59.665 55.000 0.00 0.00 0.00 4.24
817 829 1.442886 ATTTGGGGGTGGGAAGCTGA 61.443 55.000 0.00 0.00 0.00 4.26
818 830 1.660019 TTTGGGGGTGGGAAGCTGAA 61.660 55.000 0.00 0.00 0.00 3.02
819 831 1.442886 TTGGGGGTGGGAAGCTGAAT 61.443 55.000 0.00 0.00 0.00 2.57
820 832 1.380380 GGGGGTGGGAAGCTGAATG 60.380 63.158 0.00 0.00 0.00 2.67
821 833 1.380380 GGGGTGGGAAGCTGAATGG 60.380 63.158 0.00 0.00 0.00 3.16
822 834 1.384191 GGGTGGGAAGCTGAATGGT 59.616 57.895 0.00 0.00 0.00 3.55
823 835 0.967380 GGGTGGGAAGCTGAATGGTG 60.967 60.000 0.00 0.00 0.00 4.17
824 836 1.598701 GGTGGGAAGCTGAATGGTGC 61.599 60.000 0.00 0.00 0.00 5.01
825 837 1.675310 TGGGAAGCTGAATGGTGCG 60.675 57.895 0.00 0.00 0.00 5.34
826 838 2.486966 GGAAGCTGAATGGTGCGC 59.513 61.111 0.00 0.00 0.00 6.09
827 839 2.099062 GAAGCTGAATGGTGCGCG 59.901 61.111 0.00 0.00 0.00 6.86
828 840 2.358615 AAGCTGAATGGTGCGCGA 60.359 55.556 12.10 0.00 0.00 5.87
829 841 1.911293 GAAGCTGAATGGTGCGCGAA 61.911 55.000 12.10 0.00 0.00 4.70
830 842 1.308069 AAGCTGAATGGTGCGCGAAT 61.308 50.000 12.10 0.00 0.00 3.34
831 843 1.137404 GCTGAATGGTGCGCGAATT 59.863 52.632 12.10 3.02 0.00 2.17
832 844 0.456653 GCTGAATGGTGCGCGAATTT 60.457 50.000 12.10 0.00 0.00 1.82
833 845 1.202132 GCTGAATGGTGCGCGAATTTA 60.202 47.619 12.10 0.00 0.00 1.40
834 846 2.708514 CTGAATGGTGCGCGAATTTAG 58.291 47.619 12.10 6.00 0.00 1.85
835 847 2.080693 TGAATGGTGCGCGAATTTAGT 58.919 42.857 12.10 0.00 0.00 2.24
836 848 2.486203 TGAATGGTGCGCGAATTTAGTT 59.514 40.909 12.10 0.00 0.00 2.24
837 849 2.825086 ATGGTGCGCGAATTTAGTTC 57.175 45.000 12.10 0.00 0.00 3.01
838 850 0.800012 TGGTGCGCGAATTTAGTTCC 59.200 50.000 12.10 0.00 33.04 3.62
839 851 0.247537 GGTGCGCGAATTTAGTTCCG 60.248 55.000 12.10 0.00 35.20 4.30
840 852 0.856080 GTGCGCGAATTTAGTTCCGC 60.856 55.000 12.10 13.13 46.89 5.54
841 853 1.297378 GCGCGAATTTAGTTCCGCC 60.297 57.895 12.10 0.00 43.98 6.13
842 854 1.350665 CGCGAATTTAGTTCCGCCC 59.649 57.895 0.00 0.00 34.84 6.13
843 855 1.350665 GCGAATTTAGTTCCGCCCG 59.649 57.895 0.00 0.00 33.34 6.13
844 856 2.011453 CGAATTTAGTTCCGCCCGG 58.989 57.895 0.00 0.00 33.04 5.73
845 857 0.741927 CGAATTTAGTTCCGCCCGGT 60.742 55.000 6.61 0.00 36.47 5.28
846 858 1.012086 GAATTTAGTTCCGCCCGGTC 58.988 55.000 6.61 0.00 36.47 4.79
847 859 0.325602 AATTTAGTTCCGCCCGGTCA 59.674 50.000 6.61 0.00 36.47 4.02
848 860 0.107848 ATTTAGTTCCGCCCGGTCAG 60.108 55.000 6.61 0.00 36.47 3.51
849 861 2.175035 TTTAGTTCCGCCCGGTCAGG 62.175 60.000 6.61 0.00 40.63 3.86
850 862 3.892104 TAGTTCCGCCCGGTCAGGT 62.892 63.158 6.61 0.00 38.74 4.00
851 863 4.324991 GTTCCGCCCGGTCAGGTT 62.325 66.667 6.61 0.00 38.74 3.50
852 864 3.562232 TTCCGCCCGGTCAGGTTT 61.562 61.111 6.61 0.00 38.74 3.27
853 865 3.540367 TTCCGCCCGGTCAGGTTTC 62.540 63.158 6.61 0.00 38.74 2.78
857 869 4.016706 CCCGGTCAGGTTTCCGCT 62.017 66.667 0.00 0.00 44.63 5.52
858 870 2.434359 CCGGTCAGGTTTCCGCTC 60.434 66.667 0.00 0.00 44.63 5.03
859 871 2.809601 CGGTCAGGTTTCCGCTCG 60.810 66.667 0.00 0.00 40.28 5.03
860 872 2.654877 GGTCAGGTTTCCGCTCGA 59.345 61.111 0.00 0.00 0.00 4.04
861 873 1.446272 GGTCAGGTTTCCGCTCGAG 60.446 63.158 8.45 8.45 0.00 4.04
862 874 1.289380 GTCAGGTTTCCGCTCGAGT 59.711 57.895 15.13 0.00 0.00 4.18
863 875 1.009389 GTCAGGTTTCCGCTCGAGTG 61.009 60.000 19.15 19.15 0.00 3.51
864 876 1.176619 TCAGGTTTCCGCTCGAGTGA 61.177 55.000 27.11 14.59 0.00 3.41
865 877 0.319555 CAGGTTTCCGCTCGAGTGAA 60.320 55.000 27.11 19.39 0.00 3.18
866 878 0.391597 AGGTTTCCGCTCGAGTGAAA 59.608 50.000 27.11 23.46 0.00 2.69
867 879 1.202604 AGGTTTCCGCTCGAGTGAAAA 60.203 47.619 27.11 17.21 0.00 2.29
868 880 1.194772 GGTTTCCGCTCGAGTGAAAAG 59.805 52.381 27.11 10.42 0.00 2.27
869 881 0.865769 TTTCCGCTCGAGTGAAAAGC 59.134 50.000 27.11 3.85 0.00 3.51
870 882 0.249699 TTCCGCTCGAGTGAAAAGCA 60.250 50.000 27.11 0.00 35.76 3.91
878 890 4.515107 GTGAAAAGCACGCTTCCG 57.485 55.556 4.46 0.00 37.83 4.30
879 891 1.938861 GTGAAAAGCACGCTTCCGA 59.061 52.632 4.46 0.00 37.83 4.55
880 892 0.110644 GTGAAAAGCACGCTTCCGAG 60.111 55.000 4.46 0.00 37.83 4.63
881 893 1.227999 TGAAAAGCACGCTTCCGAGG 61.228 55.000 4.46 0.00 34.84 4.63
882 894 0.949105 GAAAAGCACGCTTCCGAGGA 60.949 55.000 4.46 0.00 34.84 3.71
883 895 0.534203 AAAAGCACGCTTCCGAGGAA 60.534 50.000 4.46 4.34 34.84 3.36
884 896 0.321653 AAAGCACGCTTCCGAGGAAT 60.322 50.000 4.46 0.00 34.84 3.01
885 897 0.321653 AAGCACGCTTCCGAGGAATT 60.322 50.000 4.88 0.00 38.29 2.17
886 898 1.021390 AGCACGCTTCCGAGGAATTG 61.021 55.000 4.88 3.79 38.29 2.32
887 899 1.019278 GCACGCTTCCGAGGAATTGA 61.019 55.000 4.88 0.00 38.29 2.57
888 900 0.721718 CACGCTTCCGAGGAATTGAC 59.278 55.000 4.88 0.00 38.29 3.18
889 901 0.320374 ACGCTTCCGAGGAATTGACA 59.680 50.000 4.88 0.00 38.29 3.58
890 902 1.270625 ACGCTTCCGAGGAATTGACAA 60.271 47.619 4.88 0.00 38.29 3.18
891 903 1.128692 CGCTTCCGAGGAATTGACAAC 59.871 52.381 4.88 0.00 36.29 3.32
892 904 2.151202 GCTTCCGAGGAATTGACAACA 58.849 47.619 4.88 0.00 33.28 3.33
893 905 2.160417 GCTTCCGAGGAATTGACAACAG 59.840 50.000 4.88 0.00 33.28 3.16
894 906 3.403038 CTTCCGAGGAATTGACAACAGT 58.597 45.455 4.88 0.00 33.28 3.55
895 907 3.040147 TCCGAGGAATTGACAACAGTC 57.960 47.619 0.00 0.00 0.00 3.51
896 908 2.367241 TCCGAGGAATTGACAACAGTCA 59.633 45.455 0.00 0.00 40.35 3.41
906 918 5.635417 TTGACAACAGTCAAACACATCAA 57.365 34.783 8.46 0.00 46.21 2.57
907 919 4.980590 TGACAACAGTCAAACACATCAAC 58.019 39.130 0.00 0.00 39.21 3.18
908 920 4.142491 TGACAACAGTCAAACACATCAACC 60.142 41.667 0.00 0.00 39.21 3.77
909 921 3.130340 ACAACAGTCAAACACATCAACCC 59.870 43.478 0.00 0.00 0.00 4.11
910 922 1.946768 ACAGTCAAACACATCAACCCG 59.053 47.619 0.00 0.00 0.00 5.28
911 923 1.266718 CAGTCAAACACATCAACCCGG 59.733 52.381 0.00 0.00 0.00 5.73
912 924 1.133915 AGTCAAACACATCAACCCGGT 60.134 47.619 0.00 0.00 0.00 5.28
913 925 1.001815 GTCAAACACATCAACCCGGTG 60.002 52.381 0.00 0.00 38.47 4.94
914 926 0.318614 CAAACACATCAACCCGGTGC 60.319 55.000 0.00 0.00 36.00 5.01
915 927 0.753479 AAACACATCAACCCGGTGCA 60.753 50.000 0.00 0.00 36.00 4.57
916 928 1.452145 AACACATCAACCCGGTGCAC 61.452 55.000 8.80 8.80 36.00 4.57
917 929 2.282180 ACATCAACCCGGTGCACC 60.282 61.111 26.78 26.78 0.00 5.01
918 930 3.061848 CATCAACCCGGTGCACCC 61.062 66.667 29.95 12.55 0.00 4.61
919 931 3.575247 ATCAACCCGGTGCACCCA 61.575 61.111 29.95 7.48 0.00 4.51
920 932 2.917897 ATCAACCCGGTGCACCCAT 61.918 57.895 29.95 12.81 0.00 4.00
921 933 3.372730 CAACCCGGTGCACCCATG 61.373 66.667 29.95 19.74 0.00 3.66
922 934 3.575247 AACCCGGTGCACCCATGA 61.575 61.111 29.95 0.00 0.00 3.07
923 935 3.567579 AACCCGGTGCACCCATGAG 62.568 63.158 29.95 15.22 0.00 2.90
927 939 4.722700 GGTGCACCCATGAGCGGT 62.723 66.667 26.31 0.00 0.00 5.68
928 940 2.672996 GTGCACCCATGAGCGGTT 60.673 61.111 5.22 0.00 0.00 4.44
929 941 2.359850 TGCACCCATGAGCGGTTC 60.360 61.111 0.00 0.00 0.00 3.62
930 942 3.499737 GCACCCATGAGCGGTTCG 61.500 66.667 0.00 0.00 0.00 3.95
963 975 2.474410 AAAAACCGGTGCACCAAAAA 57.526 40.000 34.16 0.00 35.14 1.94
982 994 2.303163 AAAAGAAAAACCGGTGCACC 57.697 45.000 26.78 26.78 0.00 5.01
983 995 1.187087 AAAGAAAAACCGGTGCACCA 58.813 45.000 34.16 0.00 35.14 4.17
984 996 1.187087 AAGAAAAACCGGTGCACCAA 58.813 45.000 34.16 0.00 35.14 3.67
985 997 1.187087 AGAAAAACCGGTGCACCAAA 58.813 45.000 34.16 0.00 35.14 3.28
986 998 1.134936 AGAAAAACCGGTGCACCAAAC 60.135 47.619 34.16 17.08 35.14 2.93
987 999 0.608640 AAAAACCGGTGCACCAAACA 59.391 45.000 34.16 0.00 35.14 2.83
988 1000 0.827368 AAAACCGGTGCACCAAACAT 59.173 45.000 34.16 15.08 35.14 2.71
989 1001 0.827368 AAACCGGTGCACCAAACATT 59.173 45.000 34.16 18.13 35.14 2.71
990 1002 0.387565 AACCGGTGCACCAAACATTC 59.612 50.000 34.16 6.04 35.14 2.67
991 1003 1.081509 CCGGTGCACCAAACATTCG 60.082 57.895 34.16 17.56 35.14 3.34
992 1004 1.652012 CGGTGCACCAAACATTCGT 59.348 52.632 34.16 0.00 35.14 3.85
993 1005 0.385473 CGGTGCACCAAACATTCGTC 60.385 55.000 34.16 3.97 35.14 4.20
994 1006 0.951558 GGTGCACCAAACATTCGTCT 59.048 50.000 31.23 0.00 35.64 4.18
995 1007 1.336755 GGTGCACCAAACATTCGTCTT 59.663 47.619 31.23 0.00 35.64 3.01
996 1008 2.550606 GGTGCACCAAACATTCGTCTTA 59.449 45.455 31.23 0.00 35.64 2.10
997 1009 3.190535 GGTGCACCAAACATTCGTCTTAT 59.809 43.478 31.23 0.00 35.64 1.73
998 1010 4.403453 GTGCACCAAACATTCGTCTTATC 58.597 43.478 5.22 0.00 0.00 1.75
999 1011 3.438781 TGCACCAAACATTCGTCTTATCC 59.561 43.478 0.00 0.00 0.00 2.59
1000 1012 3.438781 GCACCAAACATTCGTCTTATCCA 59.561 43.478 0.00 0.00 0.00 3.41
1001 1013 4.083003 GCACCAAACATTCGTCTTATCCAA 60.083 41.667 0.00 0.00 0.00 3.53
1002 1014 5.390613 CACCAAACATTCGTCTTATCCAAC 58.609 41.667 0.00 0.00 0.00 3.77
1003 1015 4.457949 ACCAAACATTCGTCTTATCCAACC 59.542 41.667 0.00 0.00 0.00 3.77
1004 1016 4.142469 CCAAACATTCGTCTTATCCAACCC 60.142 45.833 0.00 0.00 0.00 4.11
1005 1017 2.901249 ACATTCGTCTTATCCAACCCG 58.099 47.619 0.00 0.00 0.00 5.28
1006 1018 2.210116 CATTCGTCTTATCCAACCCGG 58.790 52.381 0.00 0.00 0.00 5.73
1007 1019 1.269012 TTCGTCTTATCCAACCCGGT 58.731 50.000 0.00 0.00 35.57 5.28
1008 1020 0.533491 TCGTCTTATCCAACCCGGTG 59.467 55.000 0.00 0.00 35.57 4.94
1009 1021 1.087771 CGTCTTATCCAACCCGGTGC 61.088 60.000 0.00 0.00 35.57 5.01
1010 1022 0.746923 GTCTTATCCAACCCGGTGCC 60.747 60.000 0.00 0.00 35.57 5.01
1011 1023 1.202099 TCTTATCCAACCCGGTGCCA 61.202 55.000 0.00 0.00 35.57 4.92
1012 1024 0.106719 CTTATCCAACCCGGTGCCAT 60.107 55.000 0.00 0.00 35.57 4.40
1013 1025 0.333312 TTATCCAACCCGGTGCCATT 59.667 50.000 0.00 0.00 35.57 3.16
1014 1026 0.395036 TATCCAACCCGGTGCCATTG 60.395 55.000 0.00 0.00 35.57 2.82
1015 1027 2.439553 ATCCAACCCGGTGCCATTGT 62.440 55.000 0.00 0.00 35.57 2.71
1016 1028 2.650196 CAACCCGGTGCCATTGTG 59.350 61.111 0.00 0.00 0.00 3.33
1017 1029 1.900981 CAACCCGGTGCCATTGTGA 60.901 57.895 0.00 0.00 0.00 3.58
1018 1030 1.076549 AACCCGGTGCCATTGTGAT 59.923 52.632 0.00 0.00 0.00 3.06
1019 1031 0.965363 AACCCGGTGCCATTGTGATC 60.965 55.000 0.00 0.00 0.00 2.92
1020 1032 2.472059 CCCGGTGCCATTGTGATCG 61.472 63.158 0.00 0.00 0.00 3.69
1021 1033 1.745115 CCGGTGCCATTGTGATCGT 60.745 57.895 0.00 0.00 0.00 3.73
1022 1034 1.705337 CCGGTGCCATTGTGATCGTC 61.705 60.000 0.00 0.00 0.00 4.20
1023 1035 1.715585 GGTGCCATTGTGATCGTCG 59.284 57.895 0.00 0.00 0.00 5.12
1024 1036 1.019278 GGTGCCATTGTGATCGTCGT 61.019 55.000 0.00 0.00 0.00 4.34
1025 1037 0.370273 GTGCCATTGTGATCGTCGTC 59.630 55.000 0.00 0.00 0.00 4.20
1026 1038 0.739462 TGCCATTGTGATCGTCGTCC 60.739 55.000 0.00 0.00 0.00 4.79
1027 1039 1.752501 GCCATTGTGATCGTCGTCCG 61.753 60.000 0.00 0.00 38.13 4.79
1028 1040 1.145759 CCATTGTGATCGTCGTCCGG 61.146 60.000 0.00 0.00 37.11 5.14
1029 1041 1.518572 ATTGTGATCGTCGTCCGGC 60.519 57.895 0.00 0.00 37.11 6.13
1030 1042 1.945354 ATTGTGATCGTCGTCCGGCT 61.945 55.000 0.00 0.00 37.11 5.52
1031 1043 2.149803 TTGTGATCGTCGTCCGGCTT 62.150 55.000 0.00 0.00 37.11 4.35
1032 1044 2.158959 GTGATCGTCGTCCGGCTTG 61.159 63.158 0.00 0.00 37.11 4.01
1033 1045 3.255379 GATCGTCGTCCGGCTTGC 61.255 66.667 0.00 0.00 37.11 4.01
1034 1046 3.982372 GATCGTCGTCCGGCTTGCA 62.982 63.158 0.00 0.00 37.11 4.08
1035 1047 3.989698 ATCGTCGTCCGGCTTGCAG 62.990 63.158 0.00 0.00 37.11 4.41
1036 1048 4.717629 CGTCGTCCGGCTTGCAGA 62.718 66.667 0.00 0.00 0.00 4.26
1037 1049 2.811317 GTCGTCCGGCTTGCAGAG 60.811 66.667 0.00 0.00 0.00 3.35
1038 1050 2.989253 TCGTCCGGCTTGCAGAGA 60.989 61.111 0.00 0.00 0.00 3.10
1039 1051 2.185350 CGTCCGGCTTGCAGAGAT 59.815 61.111 0.00 0.00 0.00 2.75
1040 1052 2.169789 CGTCCGGCTTGCAGAGATG 61.170 63.158 0.00 0.00 0.00 2.90
1041 1053 1.078848 GTCCGGCTTGCAGAGATGT 60.079 57.895 0.00 0.00 0.00 3.06
1042 1054 1.078918 TCCGGCTTGCAGAGATGTG 60.079 57.895 0.00 0.00 0.00 3.21
1043 1055 1.376424 CCGGCTTGCAGAGATGTGT 60.376 57.895 0.00 0.00 0.00 3.72
1044 1056 1.364626 CCGGCTTGCAGAGATGTGTC 61.365 60.000 0.00 0.00 0.00 3.67
1045 1057 1.364626 CGGCTTGCAGAGATGTGTCC 61.365 60.000 0.00 0.00 0.00 4.02
1046 1058 0.321919 GGCTTGCAGAGATGTGTCCA 60.322 55.000 0.00 0.00 0.00 4.02
1047 1059 1.527034 GCTTGCAGAGATGTGTCCAA 58.473 50.000 0.00 0.00 0.00 3.53
1048 1060 1.881973 GCTTGCAGAGATGTGTCCAAA 59.118 47.619 0.00 0.00 0.00 3.28
1049 1061 2.490903 GCTTGCAGAGATGTGTCCAAAT 59.509 45.455 0.00 0.00 0.00 2.32
1050 1062 3.691118 GCTTGCAGAGATGTGTCCAAATA 59.309 43.478 0.00 0.00 0.00 1.40
1051 1063 4.156556 GCTTGCAGAGATGTGTCCAAATAA 59.843 41.667 0.00 0.00 0.00 1.40
1052 1064 5.163581 GCTTGCAGAGATGTGTCCAAATAAT 60.164 40.000 0.00 0.00 0.00 1.28
1053 1065 6.626623 GCTTGCAGAGATGTGTCCAAATAATT 60.627 38.462 0.00 0.00 0.00 1.40
1054 1066 6.839124 TGCAGAGATGTGTCCAAATAATTT 57.161 33.333 0.00 0.00 0.00 1.82
1055 1067 6.855836 TGCAGAGATGTGTCCAAATAATTTC 58.144 36.000 0.00 0.00 0.00 2.17
1056 1068 6.433716 TGCAGAGATGTGTCCAAATAATTTCA 59.566 34.615 0.00 0.00 0.00 2.69
1057 1069 6.749118 GCAGAGATGTGTCCAAATAATTTCAC 59.251 38.462 0.00 0.00 0.00 3.18
1058 1070 7.575532 GCAGAGATGTGTCCAAATAATTTCACA 60.576 37.037 0.00 0.00 39.49 3.58
1059 1071 8.298854 CAGAGATGTGTCCAAATAATTTCACAA 58.701 33.333 0.00 0.00 38.84 3.33
1060 1072 8.299570 AGAGATGTGTCCAAATAATTTCACAAC 58.700 33.333 0.00 0.00 38.84 3.32
1061 1073 7.378181 AGATGTGTCCAAATAATTTCACAACC 58.622 34.615 0.00 0.00 38.84 3.77
1062 1074 6.471233 TGTGTCCAAATAATTTCACAACCA 57.529 33.333 0.00 0.00 33.81 3.67
1063 1075 6.276847 TGTGTCCAAATAATTTCACAACCAC 58.723 36.000 0.00 0.00 33.81 4.16
1064 1076 6.127338 TGTGTCCAAATAATTTCACAACCACA 60.127 34.615 0.00 0.00 33.81 4.17
1065 1077 6.928492 GTGTCCAAATAATTTCACAACCACAT 59.072 34.615 0.00 0.00 0.00 3.21
1066 1078 8.085296 GTGTCCAAATAATTTCACAACCACATA 58.915 33.333 0.00 0.00 0.00 2.29
1067 1079 8.085296 TGTCCAAATAATTTCACAACCACATAC 58.915 33.333 0.00 0.00 0.00 2.39
1068 1080 8.085296 GTCCAAATAATTTCACAACCACATACA 58.915 33.333 0.00 0.00 0.00 2.29
1069 1081 8.642432 TCCAAATAATTTCACAACCACATACAA 58.358 29.630 0.00 0.00 0.00 2.41
1070 1082 8.707839 CCAAATAATTTCACAACCACATACAAC 58.292 33.333 0.00 0.00 0.00 3.32
1071 1083 8.707839 CAAATAATTTCACAACCACATACAACC 58.292 33.333 0.00 0.00 0.00 3.77
1072 1084 3.972950 TTTCACAACCACATACAACCG 57.027 42.857 0.00 0.00 0.00 4.44
1073 1085 1.231221 TCACAACCACATACAACCGC 58.769 50.000 0.00 0.00 0.00 5.68
1074 1086 0.110419 CACAACCACATACAACCGCG 60.110 55.000 0.00 0.00 0.00 6.46
1075 1087 1.154301 CAACCACATACAACCGCGC 60.154 57.895 0.00 0.00 0.00 6.86
1076 1088 2.329614 AACCACATACAACCGCGCC 61.330 57.895 0.00 0.00 0.00 6.53
1077 1089 2.744318 CCACATACAACCGCGCCA 60.744 61.111 0.00 0.00 0.00 5.69
1078 1090 2.112198 CCACATACAACCGCGCCAT 61.112 57.895 0.00 0.00 0.00 4.40
1079 1091 1.062365 CACATACAACCGCGCCATG 59.938 57.895 0.00 0.86 0.00 3.66
1080 1092 2.112198 ACATACAACCGCGCCATGG 61.112 57.895 7.63 7.63 0.00 3.66
1081 1093 2.112198 CATACAACCGCGCCATGGT 61.112 57.895 14.67 0.00 42.98 3.55
1083 1095 1.373590 ATACAACCGCGCCATGGTTC 61.374 55.000 14.67 4.42 46.61 3.62
1084 1096 2.457743 TACAACCGCGCCATGGTTCT 62.458 55.000 14.67 6.92 46.61 3.01
1085 1097 1.743623 CAACCGCGCCATGGTTCTA 60.744 57.895 14.67 0.00 46.61 2.10
1086 1098 1.095228 CAACCGCGCCATGGTTCTAT 61.095 55.000 14.67 0.00 46.61 1.98
1087 1099 0.393808 AACCGCGCCATGGTTCTATT 60.394 50.000 14.67 0.08 46.61 1.73
1088 1100 1.095228 ACCGCGCCATGGTTCTATTG 61.095 55.000 14.67 0.00 35.82 1.90
1089 1101 1.095228 CCGCGCCATGGTTCTATTGT 61.095 55.000 14.67 0.00 0.00 2.71
1090 1102 0.732571 CGCGCCATGGTTCTATTGTT 59.267 50.000 14.67 0.00 0.00 2.83
1091 1103 1.268032 CGCGCCATGGTTCTATTGTTC 60.268 52.381 14.67 0.00 0.00 3.18
1092 1104 1.742831 GCGCCATGGTTCTATTGTTCA 59.257 47.619 14.67 0.00 0.00 3.18
1093 1105 2.163412 GCGCCATGGTTCTATTGTTCAA 59.837 45.455 14.67 0.00 0.00 2.69
1094 1106 3.758300 CGCCATGGTTCTATTGTTCAAC 58.242 45.455 14.67 0.00 0.00 3.18
1095 1107 3.427503 CGCCATGGTTCTATTGTTCAACC 60.428 47.826 14.67 0.00 40.16 3.77
1101 1113 4.825085 TGGTTCTATTGTTCAACCAAGACC 59.175 41.667 0.18 0.00 45.29 3.85
1102 1114 4.217767 GGTTCTATTGTTCAACCAAGACCC 59.782 45.833 0.00 0.00 39.61 4.46
1103 1115 4.993705 TCTATTGTTCAACCAAGACCCT 57.006 40.909 0.00 0.00 0.00 4.34
1104 1116 5.319043 TCTATTGTTCAACCAAGACCCTT 57.681 39.130 0.00 0.00 0.00 3.95
1105 1117 6.442541 TCTATTGTTCAACCAAGACCCTTA 57.557 37.500 0.00 0.00 0.00 2.69
1106 1118 6.843752 TCTATTGTTCAACCAAGACCCTTAA 58.156 36.000 0.00 0.00 0.00 1.85
1107 1119 7.291566 TCTATTGTTCAACCAAGACCCTTAAA 58.708 34.615 0.00 0.00 0.00 1.52
1108 1120 5.845391 TTGTTCAACCAAGACCCTTAAAG 57.155 39.130 0.00 0.00 0.00 1.85
1118 1130 3.487372 AGACCCTTAAAGCAACTCCAAC 58.513 45.455 0.00 0.00 0.00 3.77
1141 1154 1.011968 CGACCAATTTCGTCCGCTGA 61.012 55.000 0.00 0.00 34.16 4.26
1173 1186 4.264638 GGCGCGCACACAAAAGGT 62.265 61.111 34.42 0.00 0.00 3.50
1195 1208 1.136565 CCAACGCGCCGATTCAAAT 59.863 52.632 5.73 0.00 0.00 2.32
1265 1278 2.813908 GAGCCGGATTTGCGTCGT 60.814 61.111 5.05 0.00 0.00 4.34
1285 1298 2.250485 CGGACACGAGACGAACGT 59.750 61.111 0.00 0.00 44.60 3.99
1293 1308 4.617486 AGACGAACGTGTGCGCGA 62.617 61.111 12.10 0.00 42.83 5.87
1308 1323 1.227946 GCGACTACTCCTCTCCCCT 59.772 63.158 0.00 0.00 0.00 4.79
1332 1347 4.415150 CTGGTCGGTGGCAGCCAT 62.415 66.667 19.75 0.00 35.28 4.40
1343 1358 0.685458 GGCAGCCATCACCATTTCCT 60.685 55.000 6.55 0.00 0.00 3.36
1355 1370 2.090210 ACCATTTCCTCCCAAAACCCTT 60.090 45.455 0.00 0.00 0.00 3.95
1385 1400 3.804329 GCTCCCGCCCCATACCAA 61.804 66.667 0.00 0.00 0.00 3.67
1456 1471 0.036952 CCTCGTCTGGCATGACAACT 60.037 55.000 1.11 0.00 36.82 3.16
1457 1472 1.073964 CTCGTCTGGCATGACAACTG 58.926 55.000 1.11 0.00 36.82 3.16
2128 2154 2.978824 CGTTCCCTCGGATGGTGT 59.021 61.111 0.00 0.00 0.00 4.16
2136 2162 2.124736 CGGATGGTGTTGCCCGAT 60.125 61.111 0.00 0.00 44.29 4.18
2186 2213 2.340809 CGGCTTCCACGTGTACCA 59.659 61.111 15.65 0.00 0.00 3.25
2298 2346 4.530857 GGTGGCTCGTCATCCGGG 62.531 72.222 0.00 0.00 41.15 5.73
2325 2373 1.448893 GAAACACGGGCGGCAGATA 60.449 57.895 17.37 0.00 0.00 1.98
2400 2448 0.450583 TCGACGAGGACTACATGCAC 59.549 55.000 0.00 0.00 0.00 4.57
2543 2591 1.141665 CGTGATCAGGTCGGCATGA 59.858 57.895 6.90 6.90 39.86 3.07
2617 2666 0.960861 AGAGGACGAGTGCGACATCA 60.961 55.000 0.00 0.00 43.29 3.07
2711 2769 2.185867 GAAGGCATACACGGCGGA 59.814 61.111 13.24 0.00 36.37 5.54
2731 2789 1.229428 CGAGGACAAGCTTCTTTGCA 58.771 50.000 0.00 0.00 34.99 4.08
2789 2851 2.123342 CGCCGAACAAAAGCATTCAAA 58.877 42.857 0.00 0.00 0.00 2.69
2910 2972 2.303022 GAGGGTGATCCAACAAGAGTGA 59.697 50.000 0.00 0.00 38.24 3.41
3121 3194 1.786937 AGGTCCAACACAATGGCAAA 58.213 45.000 0.00 0.00 40.46 3.68
3166 3239 1.123928 GGGTCATCAAGGACGAGGAT 58.876 55.000 0.00 0.00 38.70 3.24
3305 3379 0.815213 GCGGGATGCAGCATCTAACA 60.815 55.000 30.20 0.00 45.45 2.41
3360 3443 0.616111 GACTCAAGGGAGGAGGAGCA 60.616 60.000 0.00 0.00 45.81 4.26
3363 3446 1.920325 CAAGGGAGGAGGAGCACCA 60.920 63.158 2.07 0.00 38.94 4.17
3495 3611 0.182775 ACCAAGGCGAAAGAAGTGGT 59.817 50.000 0.00 0.00 35.71 4.16
3497 3613 1.001378 CCAAGGCGAAAGAAGTGGTTG 60.001 52.381 0.00 0.00 0.00 3.77
3575 3691 1.415672 AAGGAAGAGGCCGTGGTTCA 61.416 55.000 0.00 0.00 0.00 3.18
3715 3838 1.379146 GAACTCAAGTCCCACCCCC 59.621 63.158 0.00 0.00 0.00 5.40
3900 4985 1.173043 GCGGACATGAAAATGGGTCA 58.827 50.000 0.00 0.00 32.00 4.02
4009 5096 3.642503 ATCCGTTTGGGTCGGCCA 61.643 61.111 9.07 0.00 46.49 5.36
4027 5114 2.427506 CCAGTTGGAGTTGCTCTTACC 58.572 52.381 0.00 0.00 37.39 2.85
4028 5115 2.069273 CAGTTGGAGTTGCTCTTACCG 58.931 52.381 0.00 0.00 0.00 4.02
4029 5116 1.692519 AGTTGGAGTTGCTCTTACCGT 59.307 47.619 0.00 0.00 0.00 4.83
4030 5117 2.067013 GTTGGAGTTGCTCTTACCGTC 58.933 52.381 0.00 0.00 0.00 4.79
4034 5121 1.727335 GAGTTGCTCTTACCGTCTTGC 59.273 52.381 0.00 0.00 0.00 4.01
4045 5132 3.453559 CGTCTTGCGGGATTACCTT 57.546 52.632 0.00 0.00 36.97 3.50
4046 5133 1.006832 CGTCTTGCGGGATTACCTTG 58.993 55.000 0.00 0.00 36.97 3.61
4048 5135 2.741878 CGTCTTGCGGGATTACCTTGAT 60.742 50.000 0.00 0.00 36.97 2.57
4049 5136 3.279434 GTCTTGCGGGATTACCTTGATT 58.721 45.455 0.00 0.00 36.97 2.57
4052 5139 5.531287 GTCTTGCGGGATTACCTTGATTATT 59.469 40.000 0.00 0.00 36.97 1.40
4053 5140 6.708949 GTCTTGCGGGATTACCTTGATTATTA 59.291 38.462 0.00 0.00 36.97 0.98
4056 5143 5.995282 TGCGGGATTACCTTGATTATTAGTG 59.005 40.000 0.00 0.00 36.97 2.74
4057 5144 6.183361 TGCGGGATTACCTTGATTATTAGTGA 60.183 38.462 0.00 0.00 36.97 3.41
4058 5145 6.879458 GCGGGATTACCTTGATTATTAGTGAT 59.121 38.462 0.00 0.00 36.97 3.06
4059 5146 7.390718 GCGGGATTACCTTGATTATTAGTGATT 59.609 37.037 0.00 0.00 36.97 2.57
4080 5167 7.443477 TGATTAATCAATACCAATGCATTGGG 58.557 34.615 45.36 33.13 46.27 4.12
4081 5168 7.955426 TGATTAATCAATACCAATGCATTGGGC 60.955 37.037 45.36 25.47 46.27 5.36
4101 5188 4.950434 GCATTTAATGGCTGCATTGTTT 57.050 36.364 7.08 0.00 35.96 2.83
4102 5189 4.654015 GCATTTAATGGCTGCATTGTTTG 58.346 39.130 7.08 1.55 35.96 2.93
4103 5190 4.154556 GCATTTAATGGCTGCATTGTTTGT 59.845 37.500 7.08 0.00 35.96 2.83
4104 5191 5.350914 GCATTTAATGGCTGCATTGTTTGTA 59.649 36.000 7.08 0.00 35.96 2.41
4107 5194 7.593875 TTTAATGGCTGCATTGTTTGTATTC 57.406 32.000 0.50 0.00 0.00 1.75
4109 5196 4.804868 TGGCTGCATTGTTTGTATTCAT 57.195 36.364 0.50 0.00 0.00 2.57
4110 5197 4.746729 TGGCTGCATTGTTTGTATTCATC 58.253 39.130 0.50 0.00 0.00 2.92
4113 5200 4.496895 GCTGCATTGTTTGTATTCATCGAC 59.503 41.667 0.00 0.00 0.00 4.20
4114 5201 5.619625 TGCATTGTTTGTATTCATCGACA 57.380 34.783 0.00 0.00 0.00 4.35
4115 5202 6.193514 TGCATTGTTTGTATTCATCGACAT 57.806 33.333 0.00 0.00 0.00 3.06
4118 5205 7.909641 TGCATTGTTTGTATTCATCGACATTAG 59.090 33.333 0.00 0.00 0.00 1.73
4120 5207 6.358118 TGTTTGTATTCATCGACATTAGGC 57.642 37.500 0.00 0.00 0.00 3.93
4121 5208 5.877564 TGTTTGTATTCATCGACATTAGGCA 59.122 36.000 0.00 0.00 0.00 4.75
4122 5209 6.542005 TGTTTGTATTCATCGACATTAGGCAT 59.458 34.615 0.00 0.00 0.00 4.40
4123 5210 7.713073 TGTTTGTATTCATCGACATTAGGCATA 59.287 33.333 0.00 0.00 0.00 3.14
4124 5211 7.889589 TTGTATTCATCGACATTAGGCATAG 57.110 36.000 0.00 0.00 0.00 2.23
4125 5212 5.869344 TGTATTCATCGACATTAGGCATAGC 59.131 40.000 0.00 0.00 0.00 2.97
4126 5213 4.607293 TTCATCGACATTAGGCATAGCT 57.393 40.909 0.00 0.00 0.00 3.32
4128 5215 4.960938 TCATCGACATTAGGCATAGCTTT 58.039 39.130 0.00 0.00 0.00 3.51
4131 5218 4.371786 TCGACATTAGGCATAGCTTTCTG 58.628 43.478 0.00 0.00 0.00 3.02
4200 5318 4.326826 TCGTTTCGGAGGAGTAGACTTTA 58.673 43.478 0.00 0.00 0.00 1.85
4206 5324 4.946157 TCGGAGGAGTAGACTTTAACGATT 59.054 41.667 0.00 0.00 0.00 3.34
4225 5343 1.131218 CGACTACGAACGTGCGAGA 59.869 57.895 25.68 9.14 42.66 4.04
4264 5382 1.996191 CGCTAAACCAACTCTGAGAGC 59.004 52.381 12.44 6.92 32.04 4.09
4427 5598 1.116308 TGACGTCTTGGTCTGGTCAA 58.884 50.000 17.92 0.00 37.81 3.18
4458 5629 2.124903 CGAAGTACGTGAAGTTGCAGT 58.875 47.619 0.00 0.00 37.22 4.40
4487 5659 8.192110 TGGCGAACTTTTAATCTAAACAAAACT 58.808 29.630 0.00 0.00 0.00 2.66
4530 5702 7.037586 CCCTAAAGGCTGTATATATGGAGGAAA 60.038 40.741 0.00 0.00 0.00 3.13
4531 5703 8.043710 CCTAAAGGCTGTATATATGGAGGAAAG 58.956 40.741 0.00 0.00 0.00 2.62
4602 5776 2.369203 TCTTGTTTCCCCACACATACGA 59.631 45.455 0.00 0.00 0.00 3.43
4615 5789 6.148811 CCCACACATACGAACTCTAAAAACAT 59.851 38.462 0.00 0.00 0.00 2.71
4617 5791 7.095397 CCACACATACGAACTCTAAAAACATCA 60.095 37.037 0.00 0.00 0.00 3.07
4647 5821 7.827236 ACTCAAGTATTTCGAAATTACATGGGA 59.173 33.333 27.10 14.58 0.00 4.37
4651 5825 4.695217 TTTCGAAATTACATGGGACTGC 57.305 40.909 6.47 0.00 0.00 4.40
4664 5841 2.287977 GGACTGCCCCAAAACTAAGT 57.712 50.000 0.00 0.00 0.00 2.24
4790 5967 5.835113 AATATGCACTAGAAACGCCATTT 57.165 34.783 0.00 0.00 0.00 2.32
4791 5968 3.764885 ATGCACTAGAAACGCCATTTC 57.235 42.857 0.00 0.73 46.21 2.17
4866 6213 0.835941 CCTCTTGTCCATGCTAGGCT 59.164 55.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 8.829514 TCTTGTTTTTACTGTCACATAAAACG 57.170 30.769 13.79 5.69 40.02 3.60
39 40 3.801293 GCTGTTGAAATTTGGCTTGCTCT 60.801 43.478 0.00 0.00 0.00 4.09
60 61 3.914426 TGACTTCTTGGGAGGATAAGC 57.086 47.619 0.00 0.00 0.00 3.09
63 64 8.611257 TCTTTATTTTGACTTCTTGGGAGGATA 58.389 33.333 0.00 0.00 0.00 2.59
115 116 5.414454 GCTTCTCTGACTCTTTCTAGTCTCA 59.586 44.000 5.68 0.00 45.12 3.27
220 227 8.958119 TCGTTCTAGGAATAGCAAATAATGTT 57.042 30.769 0.00 0.00 0.00 2.71
244 251 6.827641 TGCGTTTGATCTGTTTGTTACTATC 58.172 36.000 0.00 0.00 0.00 2.08
252 259 3.250762 TCCTTCTGCGTTTGATCTGTTTG 59.749 43.478 0.00 0.00 0.00 2.93
284 296 4.024048 TCCTTCTGCGTTTGATCTGTTTTC 60.024 41.667 0.00 0.00 0.00 2.29
499 511 2.592993 GGAGCAGTACCACAGCCCA 61.593 63.158 0.00 0.00 30.21 5.36
520 532 1.764054 CTTCGCCAGGGAGAGGGAT 60.764 63.158 0.00 0.00 0.00 3.85
626 638 1.742761 CGGAGGATGAATGCTGTTGT 58.257 50.000 0.00 0.00 0.00 3.32
662 674 1.194772 GCAAGTCTTTACCGTGTGCTC 59.805 52.381 0.00 0.00 0.00 4.26
663 675 1.226746 GCAAGTCTTTACCGTGTGCT 58.773 50.000 0.00 0.00 0.00 4.40
730 742 1.152715 CCTCTCTCCTCCGGTACCC 60.153 68.421 6.25 0.00 0.00 3.69
771 783 1.996798 TATCTAGGGTTGCTCCTCCG 58.003 55.000 0.00 0.00 38.30 4.63
772 784 3.243724 ACATATCTAGGGTTGCTCCTCC 58.756 50.000 0.00 0.00 38.30 4.30
773 785 4.965200 AACATATCTAGGGTTGCTCCTC 57.035 45.455 0.00 0.00 38.30 3.71
774 786 5.717119 AAAACATATCTAGGGTTGCTCCT 57.283 39.130 0.00 0.00 40.79 3.69
775 787 8.465273 AATAAAAACATATCTAGGGTTGCTCC 57.535 34.615 0.00 0.00 0.00 4.70
776 788 9.736023 CAAATAAAAACATATCTAGGGTTGCTC 57.264 33.333 0.00 0.00 0.00 4.26
777 789 8.695456 CCAAATAAAAACATATCTAGGGTTGCT 58.305 33.333 0.00 0.00 0.00 3.91
778 790 7.926018 CCCAAATAAAAACATATCTAGGGTTGC 59.074 37.037 0.00 0.00 0.00 4.17
779 791 8.421002 CCCCAAATAAAAACATATCTAGGGTTG 58.579 37.037 0.00 0.00 0.00 3.77
780 792 7.567250 CCCCCAAATAAAAACATATCTAGGGTT 59.433 37.037 0.00 0.00 0.00 4.11
781 793 7.073208 CCCCCAAATAAAAACATATCTAGGGT 58.927 38.462 0.00 0.00 0.00 4.34
782 794 7.015195 CACCCCCAAATAAAAACATATCTAGGG 59.985 40.741 0.00 0.00 0.00 3.53
783 795 7.015195 CCACCCCCAAATAAAAACATATCTAGG 59.985 40.741 0.00 0.00 0.00 3.02
784 796 7.015195 CCCACCCCCAAATAAAAACATATCTAG 59.985 40.741 0.00 0.00 0.00 2.43
785 797 6.841755 CCCACCCCCAAATAAAAACATATCTA 59.158 38.462 0.00 0.00 0.00 1.98
786 798 5.665360 CCCACCCCCAAATAAAAACATATCT 59.335 40.000 0.00 0.00 0.00 1.98
787 799 5.663556 TCCCACCCCCAAATAAAAACATATC 59.336 40.000 0.00 0.00 0.00 1.63
788 800 5.604752 TCCCACCCCCAAATAAAAACATAT 58.395 37.500 0.00 0.00 0.00 1.78
789 801 5.024803 TCCCACCCCCAAATAAAAACATA 57.975 39.130 0.00 0.00 0.00 2.29
790 802 3.875571 TCCCACCCCCAAATAAAAACAT 58.124 40.909 0.00 0.00 0.00 2.71
791 803 3.346146 TCCCACCCCCAAATAAAAACA 57.654 42.857 0.00 0.00 0.00 2.83
792 804 3.558321 GCTTCCCACCCCCAAATAAAAAC 60.558 47.826 0.00 0.00 0.00 2.43
793 805 2.640332 GCTTCCCACCCCCAAATAAAAA 59.360 45.455 0.00 0.00 0.00 1.94
794 806 2.158081 AGCTTCCCACCCCCAAATAAAA 60.158 45.455 0.00 0.00 0.00 1.52
795 807 1.435168 AGCTTCCCACCCCCAAATAAA 59.565 47.619 0.00 0.00 0.00 1.40
796 808 1.089123 AGCTTCCCACCCCCAAATAA 58.911 50.000 0.00 0.00 0.00 1.40
797 809 0.334676 CAGCTTCCCACCCCCAAATA 59.665 55.000 0.00 0.00 0.00 1.40
798 810 1.079073 CAGCTTCCCACCCCCAAAT 59.921 57.895 0.00 0.00 0.00 2.32
799 811 1.660019 TTCAGCTTCCCACCCCCAAA 61.660 55.000 0.00 0.00 0.00 3.28
800 812 1.442886 ATTCAGCTTCCCACCCCCAA 61.443 55.000 0.00 0.00 0.00 4.12
801 813 1.856873 ATTCAGCTTCCCACCCCCA 60.857 57.895 0.00 0.00 0.00 4.96
802 814 1.380380 CATTCAGCTTCCCACCCCC 60.380 63.158 0.00 0.00 0.00 5.40
803 815 1.380380 CCATTCAGCTTCCCACCCC 60.380 63.158 0.00 0.00 0.00 4.95
804 816 0.967380 CACCATTCAGCTTCCCACCC 60.967 60.000 0.00 0.00 0.00 4.61
805 817 1.598701 GCACCATTCAGCTTCCCACC 61.599 60.000 0.00 0.00 0.00 4.61
806 818 1.885871 GCACCATTCAGCTTCCCAC 59.114 57.895 0.00 0.00 0.00 4.61
807 819 1.675310 CGCACCATTCAGCTTCCCA 60.675 57.895 0.00 0.00 0.00 4.37
808 820 3.056313 GCGCACCATTCAGCTTCCC 62.056 63.158 0.30 0.00 0.00 3.97
809 821 2.486966 GCGCACCATTCAGCTTCC 59.513 61.111 0.30 0.00 0.00 3.46
810 822 1.911293 TTCGCGCACCATTCAGCTTC 61.911 55.000 8.75 0.00 0.00 3.86
811 823 1.308069 ATTCGCGCACCATTCAGCTT 61.308 50.000 8.75 0.00 0.00 3.74
812 824 1.308069 AATTCGCGCACCATTCAGCT 61.308 50.000 8.75 0.00 0.00 4.24
813 825 0.456653 AAATTCGCGCACCATTCAGC 60.457 50.000 8.75 0.00 0.00 4.26
814 826 2.095853 ACTAAATTCGCGCACCATTCAG 59.904 45.455 8.75 0.00 0.00 3.02
815 827 2.080693 ACTAAATTCGCGCACCATTCA 58.919 42.857 8.75 0.00 0.00 2.57
816 828 2.825086 ACTAAATTCGCGCACCATTC 57.175 45.000 8.75 0.00 0.00 2.67
817 829 2.159435 GGAACTAAATTCGCGCACCATT 60.159 45.455 8.75 0.00 38.31 3.16
818 830 1.400494 GGAACTAAATTCGCGCACCAT 59.600 47.619 8.75 0.00 38.31 3.55
819 831 0.800012 GGAACTAAATTCGCGCACCA 59.200 50.000 8.75 0.00 38.31 4.17
820 832 0.247537 CGGAACTAAATTCGCGCACC 60.248 55.000 8.75 0.00 38.31 5.01
821 833 0.856080 GCGGAACTAAATTCGCGCAC 60.856 55.000 8.75 0.00 46.98 5.34
822 834 1.422269 GCGGAACTAAATTCGCGCA 59.578 52.632 8.75 0.00 46.98 6.09
823 835 4.263708 GCGGAACTAAATTCGCGC 57.736 55.556 0.00 0.00 44.21 6.86
824 836 1.350665 GGGCGGAACTAAATTCGCG 59.649 57.895 0.00 0.00 38.31 5.87
825 837 1.350665 CGGGCGGAACTAAATTCGC 59.649 57.895 0.00 0.00 38.31 4.70
826 838 0.741927 ACCGGGCGGAACTAAATTCG 60.742 55.000 6.32 0.00 38.31 3.34
827 839 1.012086 GACCGGGCGGAACTAAATTC 58.988 55.000 6.32 0.00 38.96 2.17
828 840 0.325602 TGACCGGGCGGAACTAAATT 59.674 50.000 6.32 0.00 38.96 1.82
829 841 0.107848 CTGACCGGGCGGAACTAAAT 60.108 55.000 12.16 0.00 38.96 1.40
830 842 1.294138 CTGACCGGGCGGAACTAAA 59.706 57.895 12.16 0.00 38.96 1.85
831 843 2.652095 CCTGACCGGGCGGAACTAA 61.652 63.158 21.03 0.00 38.96 2.24
832 844 3.072468 CCTGACCGGGCGGAACTA 61.072 66.667 21.03 0.00 38.96 2.24
834 846 3.837570 AAACCTGACCGGGCGGAAC 62.838 63.158 21.03 0.00 38.96 3.62
835 847 3.540367 GAAACCTGACCGGGCGGAA 62.540 63.158 21.03 0.00 38.96 4.30
836 848 4.011517 GAAACCTGACCGGGCGGA 62.012 66.667 21.03 0.00 38.96 5.54
843 855 1.446272 CTCGAGCGGAAACCTGACC 60.446 63.158 0.00 0.00 0.00 4.02
844 856 1.009389 CACTCGAGCGGAAACCTGAC 61.009 60.000 13.61 0.00 0.00 3.51
845 857 1.176619 TCACTCGAGCGGAAACCTGA 61.177 55.000 13.61 2.95 0.00 3.86
846 858 0.319555 TTCACTCGAGCGGAAACCTG 60.320 55.000 13.61 0.18 0.00 4.00
847 859 0.391597 TTTCACTCGAGCGGAAACCT 59.608 50.000 22.02 0.00 0.00 3.50
848 860 1.194772 CTTTTCACTCGAGCGGAAACC 59.805 52.381 24.34 0.00 30.86 3.27
849 861 1.398578 GCTTTTCACTCGAGCGGAAAC 60.399 52.381 24.34 14.73 30.86 2.78
850 862 0.865769 GCTTTTCACTCGAGCGGAAA 59.134 50.000 22.02 22.02 0.00 3.13
851 863 0.249699 TGCTTTTCACTCGAGCGGAA 60.250 50.000 13.61 13.96 39.23 4.30
852 864 0.944311 GTGCTTTTCACTCGAGCGGA 60.944 55.000 13.61 7.90 42.38 5.54
853 865 1.493311 GTGCTTTTCACTCGAGCGG 59.507 57.895 13.61 5.23 42.38 5.52
854 866 1.128611 CGTGCTTTTCACTCGAGCG 59.871 57.895 13.61 2.35 43.46 5.03
855 867 1.154580 GCGTGCTTTTCACTCGAGC 60.155 57.895 13.61 0.00 43.46 5.03
856 868 0.861837 AAGCGTGCTTTTCACTCGAG 59.138 50.000 11.84 11.84 43.46 4.04
857 869 0.859232 GAAGCGTGCTTTTCACTCGA 59.141 50.000 8.72 0.00 43.46 4.04
858 870 0.110644 GGAAGCGTGCTTTTCACTCG 60.111 55.000 8.72 0.00 43.46 4.18
859 871 0.110644 CGGAAGCGTGCTTTTCACTC 60.111 55.000 8.72 0.00 43.46 3.51
860 872 0.531974 TCGGAAGCGTGCTTTTCACT 60.532 50.000 8.72 0.00 43.46 3.41
861 873 0.110644 CTCGGAAGCGTGCTTTTCAC 60.111 55.000 8.72 0.00 42.23 3.18
862 874 1.227999 CCTCGGAAGCGTGCTTTTCA 61.228 55.000 8.72 0.00 36.26 2.69
863 875 0.949105 TCCTCGGAAGCGTGCTTTTC 60.949 55.000 8.72 3.99 36.26 2.29
864 876 0.534203 TTCCTCGGAAGCGTGCTTTT 60.534 50.000 8.72 0.00 36.26 2.27
865 877 0.321653 ATTCCTCGGAAGCGTGCTTT 60.322 50.000 8.72 0.00 37.56 3.51
866 878 0.321653 AATTCCTCGGAAGCGTGCTT 60.322 50.000 6.84 6.84 37.56 3.91
867 879 1.021390 CAATTCCTCGGAAGCGTGCT 61.021 55.000 4.53 0.00 37.56 4.40
868 880 1.019278 TCAATTCCTCGGAAGCGTGC 61.019 55.000 4.53 0.00 37.56 5.34
869 881 0.721718 GTCAATTCCTCGGAAGCGTG 59.278 55.000 4.53 3.15 37.56 5.34
870 882 0.320374 TGTCAATTCCTCGGAAGCGT 59.680 50.000 4.53 0.00 37.56 5.07
871 883 1.128692 GTTGTCAATTCCTCGGAAGCG 59.871 52.381 4.53 0.00 37.56 4.68
872 884 2.151202 TGTTGTCAATTCCTCGGAAGC 58.849 47.619 4.53 0.00 37.56 3.86
873 885 3.403038 ACTGTTGTCAATTCCTCGGAAG 58.597 45.455 4.53 0.00 37.56 3.46
874 886 3.399330 GACTGTTGTCAATTCCTCGGAA 58.601 45.455 0.11 0.11 42.48 4.30
875 887 3.040147 GACTGTTGTCAATTCCTCGGA 57.960 47.619 0.00 0.00 42.48 4.55
886 898 4.351192 GGTTGATGTGTTTGACTGTTGTC 58.649 43.478 0.00 0.00 43.20 3.18
887 899 3.130340 GGGTTGATGTGTTTGACTGTTGT 59.870 43.478 0.00 0.00 0.00 3.32
888 900 3.705604 GGGTTGATGTGTTTGACTGTTG 58.294 45.455 0.00 0.00 0.00 3.33
889 901 2.357637 CGGGTTGATGTGTTTGACTGTT 59.642 45.455 0.00 0.00 0.00 3.16
890 902 1.946768 CGGGTTGATGTGTTTGACTGT 59.053 47.619 0.00 0.00 0.00 3.55
891 903 1.266718 CCGGGTTGATGTGTTTGACTG 59.733 52.381 0.00 0.00 0.00 3.51
892 904 1.133915 ACCGGGTTGATGTGTTTGACT 60.134 47.619 6.32 0.00 0.00 3.41
893 905 1.001815 CACCGGGTTGATGTGTTTGAC 60.002 52.381 6.32 0.00 0.00 3.18
894 906 1.313772 CACCGGGTTGATGTGTTTGA 58.686 50.000 6.32 0.00 0.00 2.69
895 907 0.318614 GCACCGGGTTGATGTGTTTG 60.319 55.000 6.32 0.00 0.00 2.93
896 908 0.753479 TGCACCGGGTTGATGTGTTT 60.753 50.000 6.32 0.00 0.00 2.83
897 909 1.152860 TGCACCGGGTTGATGTGTT 60.153 52.632 6.32 0.00 0.00 3.32
898 910 1.896660 GTGCACCGGGTTGATGTGT 60.897 57.895 5.22 0.00 0.00 3.72
899 911 2.625823 GGTGCACCGGGTTGATGTG 61.626 63.158 22.49 0.00 0.00 3.21
900 912 2.282180 GGTGCACCGGGTTGATGT 60.282 61.111 22.49 0.00 0.00 3.06
901 913 3.061848 GGGTGCACCGGGTTGATG 61.062 66.667 29.08 0.00 36.71 3.07
902 914 2.917897 ATGGGTGCACCGGGTTGAT 61.918 57.895 29.08 10.95 44.64 2.57
903 915 3.575247 ATGGGTGCACCGGGTTGA 61.575 61.111 29.08 9.09 44.64 3.18
904 916 3.372730 CATGGGTGCACCGGGTTG 61.373 66.667 29.08 18.55 44.64 3.77
905 917 3.567579 CTCATGGGTGCACCGGGTT 62.568 63.158 29.08 11.01 44.64 4.11
906 918 4.033776 CTCATGGGTGCACCGGGT 62.034 66.667 29.08 14.70 44.64 5.28
910 922 4.722700 ACCGCTCATGGGTGCACC 62.723 66.667 28.57 28.57 36.14 5.01
911 923 2.672996 AACCGCTCATGGGTGCAC 60.673 61.111 8.80 8.80 37.96 4.57
912 924 2.359850 GAACCGCTCATGGGTGCA 60.360 61.111 0.00 0.00 37.96 4.57
913 925 3.499737 CGAACCGCTCATGGGTGC 61.500 66.667 0.00 0.00 37.96 5.01
944 956 2.474410 TTTTTGGTGCACCGGTTTTT 57.526 40.000 30.07 0.00 39.43 1.94
962 974 2.028020 TGGTGCACCGGTTTTTCTTTTT 60.028 40.909 30.07 0.00 39.43 1.94
963 975 1.550976 TGGTGCACCGGTTTTTCTTTT 59.449 42.857 30.07 0.00 39.43 2.27
964 976 1.187087 TGGTGCACCGGTTTTTCTTT 58.813 45.000 30.07 0.00 39.43 2.52
965 977 1.187087 TTGGTGCACCGGTTTTTCTT 58.813 45.000 30.07 0.00 39.43 2.52
966 978 1.134936 GTTTGGTGCACCGGTTTTTCT 60.135 47.619 30.07 0.00 39.43 2.52
967 979 1.282817 GTTTGGTGCACCGGTTTTTC 58.717 50.000 30.07 12.36 39.43 2.29
968 980 0.608640 TGTTTGGTGCACCGGTTTTT 59.391 45.000 30.07 0.00 39.43 1.94
969 981 0.827368 ATGTTTGGTGCACCGGTTTT 59.173 45.000 30.07 12.65 39.43 2.43
970 982 0.827368 AATGTTTGGTGCACCGGTTT 59.173 45.000 30.07 15.94 39.43 3.27
971 983 0.387565 GAATGTTTGGTGCACCGGTT 59.612 50.000 30.07 18.82 39.43 4.44
972 984 1.791103 CGAATGTTTGGTGCACCGGT 61.791 55.000 30.07 0.00 39.43 5.28
973 985 1.081509 CGAATGTTTGGTGCACCGG 60.082 57.895 30.07 0.00 39.43 5.28
974 986 0.385473 GACGAATGTTTGGTGCACCG 60.385 55.000 30.07 17.61 39.43 4.94
975 987 0.951558 AGACGAATGTTTGGTGCACC 59.048 50.000 29.67 29.67 0.00 5.01
976 988 2.774439 AAGACGAATGTTTGGTGCAC 57.226 45.000 8.80 8.80 0.00 4.57
977 989 3.438781 GGATAAGACGAATGTTTGGTGCA 59.561 43.478 0.00 0.00 0.00 4.57
978 990 3.438781 TGGATAAGACGAATGTTTGGTGC 59.561 43.478 0.00 0.00 0.00 5.01
979 991 5.390613 GTTGGATAAGACGAATGTTTGGTG 58.609 41.667 0.00 0.00 0.00 4.17
980 992 4.457949 GGTTGGATAAGACGAATGTTTGGT 59.542 41.667 0.00 0.00 0.00 3.67
981 993 4.142469 GGGTTGGATAAGACGAATGTTTGG 60.142 45.833 0.00 0.00 0.00 3.28
982 994 4.436852 CGGGTTGGATAAGACGAATGTTTG 60.437 45.833 0.00 0.00 0.00 2.93
983 995 3.687698 CGGGTTGGATAAGACGAATGTTT 59.312 43.478 0.00 0.00 0.00 2.83
984 996 3.267483 CGGGTTGGATAAGACGAATGTT 58.733 45.455 0.00 0.00 0.00 2.71
985 997 2.419574 CCGGGTTGGATAAGACGAATGT 60.420 50.000 0.00 0.00 42.00 2.71
986 998 2.210116 CCGGGTTGGATAAGACGAATG 58.790 52.381 0.00 0.00 42.00 2.67
987 999 1.835531 ACCGGGTTGGATAAGACGAAT 59.164 47.619 6.32 0.00 42.00 3.34
988 1000 1.066716 CACCGGGTTGGATAAGACGAA 60.067 52.381 6.32 0.00 42.00 3.85
989 1001 0.533491 CACCGGGTTGGATAAGACGA 59.467 55.000 6.32 0.00 42.00 4.20
990 1002 1.087771 GCACCGGGTTGGATAAGACG 61.088 60.000 6.32 0.00 42.00 4.18
991 1003 0.746923 GGCACCGGGTTGGATAAGAC 60.747 60.000 6.32 0.00 42.00 3.01
992 1004 1.202099 TGGCACCGGGTTGGATAAGA 61.202 55.000 6.32 0.00 42.00 2.10
993 1005 0.106719 ATGGCACCGGGTTGGATAAG 60.107 55.000 6.32 0.00 42.00 1.73
994 1006 0.333312 AATGGCACCGGGTTGGATAA 59.667 50.000 6.32 0.00 42.00 1.75
995 1007 0.395036 CAATGGCACCGGGTTGGATA 60.395 55.000 6.32 0.00 42.00 2.59
996 1008 1.682005 CAATGGCACCGGGTTGGAT 60.682 57.895 6.32 0.00 42.00 3.41
997 1009 2.282816 CAATGGCACCGGGTTGGA 60.283 61.111 6.32 0.00 42.00 3.53
998 1010 2.600173 ACAATGGCACCGGGTTGG 60.600 61.111 6.32 0.00 46.41 3.77
999 1011 1.250154 ATCACAATGGCACCGGGTTG 61.250 55.000 6.32 5.36 0.00 3.77
1000 1012 0.965363 GATCACAATGGCACCGGGTT 60.965 55.000 6.32 0.00 0.00 4.11
1001 1013 1.378514 GATCACAATGGCACCGGGT 60.379 57.895 6.32 0.00 0.00 5.28
1002 1014 2.472059 CGATCACAATGGCACCGGG 61.472 63.158 6.32 0.00 0.00 5.73
1003 1015 1.705337 GACGATCACAATGGCACCGG 61.705 60.000 0.00 0.00 0.00 5.28
1004 1016 1.715585 GACGATCACAATGGCACCG 59.284 57.895 0.00 0.00 0.00 4.94
1005 1017 1.019278 ACGACGATCACAATGGCACC 61.019 55.000 0.00 0.00 0.00 5.01
1006 1018 0.370273 GACGACGATCACAATGGCAC 59.630 55.000 0.00 0.00 0.00 5.01
1007 1019 0.739462 GGACGACGATCACAATGGCA 60.739 55.000 0.00 0.00 0.00 4.92
1008 1020 2.006772 GGACGACGATCACAATGGC 58.993 57.895 0.00 0.00 0.00 4.40
1019 1031 4.717629 TCTGCAAGCCGGACGACG 62.718 66.667 5.05 0.00 43.80 5.12
1020 1032 2.564553 ATCTCTGCAAGCCGGACGAC 62.565 60.000 5.05 0.00 0.00 4.34
1021 1033 2.351244 ATCTCTGCAAGCCGGACGA 61.351 57.895 5.05 0.00 0.00 4.20
1022 1034 2.169789 CATCTCTGCAAGCCGGACG 61.170 63.158 5.05 0.00 0.00 4.79
1023 1035 1.078848 ACATCTCTGCAAGCCGGAC 60.079 57.895 5.05 0.00 0.00 4.79
1024 1036 1.078918 CACATCTCTGCAAGCCGGA 60.079 57.895 5.05 0.00 0.00 5.14
1025 1037 1.364626 GACACATCTCTGCAAGCCGG 61.365 60.000 0.00 0.00 0.00 6.13
1026 1038 1.364626 GGACACATCTCTGCAAGCCG 61.365 60.000 0.00 0.00 0.00 5.52
1027 1039 0.321919 TGGACACATCTCTGCAAGCC 60.322 55.000 0.00 0.00 0.00 4.35
1028 1040 1.527034 TTGGACACATCTCTGCAAGC 58.473 50.000 0.00 0.00 0.00 4.01
1029 1041 5.885230 TTATTTGGACACATCTCTGCAAG 57.115 39.130 0.00 0.00 0.00 4.01
1030 1042 6.839124 AATTATTTGGACACATCTCTGCAA 57.161 33.333 0.00 0.00 0.00 4.08
1031 1043 6.433716 TGAAATTATTTGGACACATCTCTGCA 59.566 34.615 0.00 0.00 0.00 4.41
1032 1044 6.749118 GTGAAATTATTTGGACACATCTCTGC 59.251 38.462 0.00 0.00 0.00 4.26
1033 1045 7.819644 TGTGAAATTATTTGGACACATCTCTG 58.180 34.615 6.60 0.00 34.19 3.35
1034 1046 8.299570 GTTGTGAAATTATTTGGACACATCTCT 58.700 33.333 10.17 0.00 37.91 3.10
1035 1047 7.542130 GGTTGTGAAATTATTTGGACACATCTC 59.458 37.037 10.17 6.02 37.91 2.75
1036 1048 7.015098 TGGTTGTGAAATTATTTGGACACATCT 59.985 33.333 10.17 0.00 37.91 2.90
1037 1049 7.116233 GTGGTTGTGAAATTATTTGGACACATC 59.884 37.037 10.17 9.53 37.91 3.06
1038 1050 6.928492 GTGGTTGTGAAATTATTTGGACACAT 59.072 34.615 10.17 0.00 37.91 3.21
1039 1051 6.127338 TGTGGTTGTGAAATTATTTGGACACA 60.127 34.615 6.60 6.60 36.66 3.72
1040 1052 6.276847 TGTGGTTGTGAAATTATTTGGACAC 58.723 36.000 0.00 0.00 0.00 3.67
1041 1053 6.471233 TGTGGTTGTGAAATTATTTGGACA 57.529 33.333 0.00 0.00 0.00 4.02
1042 1054 8.085296 TGTATGTGGTTGTGAAATTATTTGGAC 58.915 33.333 0.00 0.00 0.00 4.02
1043 1055 8.183104 TGTATGTGGTTGTGAAATTATTTGGA 57.817 30.769 0.00 0.00 0.00 3.53
1044 1056 8.707839 GTTGTATGTGGTTGTGAAATTATTTGG 58.292 33.333 0.00 0.00 0.00 3.28
1045 1057 8.707839 GGTTGTATGTGGTTGTGAAATTATTTG 58.292 33.333 0.00 0.00 0.00 2.32
1046 1058 7.596995 CGGTTGTATGTGGTTGTGAAATTATTT 59.403 33.333 0.00 0.00 0.00 1.40
1047 1059 7.087639 CGGTTGTATGTGGTTGTGAAATTATT 58.912 34.615 0.00 0.00 0.00 1.40
1048 1060 6.616947 CGGTTGTATGTGGTTGTGAAATTAT 58.383 36.000 0.00 0.00 0.00 1.28
1049 1061 5.563085 GCGGTTGTATGTGGTTGTGAAATTA 60.563 40.000 0.00 0.00 0.00 1.40
1050 1062 4.794655 GCGGTTGTATGTGGTTGTGAAATT 60.795 41.667 0.00 0.00 0.00 1.82
1051 1063 3.305064 GCGGTTGTATGTGGTTGTGAAAT 60.305 43.478 0.00 0.00 0.00 2.17
1052 1064 2.033550 GCGGTTGTATGTGGTTGTGAAA 59.966 45.455 0.00 0.00 0.00 2.69
1053 1065 1.604755 GCGGTTGTATGTGGTTGTGAA 59.395 47.619 0.00 0.00 0.00 3.18
1054 1066 1.231221 GCGGTTGTATGTGGTTGTGA 58.769 50.000 0.00 0.00 0.00 3.58
1055 1067 0.110419 CGCGGTTGTATGTGGTTGTG 60.110 55.000 0.00 0.00 0.00 3.33
1056 1068 1.847890 GCGCGGTTGTATGTGGTTGT 61.848 55.000 8.83 0.00 0.00 3.32
1057 1069 1.154301 GCGCGGTTGTATGTGGTTG 60.154 57.895 8.83 0.00 0.00 3.77
1058 1070 2.329614 GGCGCGGTTGTATGTGGTT 61.330 57.895 8.83 0.00 0.00 3.67
1059 1071 2.744709 GGCGCGGTTGTATGTGGT 60.745 61.111 8.83 0.00 0.00 4.16
1060 1072 2.112198 ATGGCGCGGTTGTATGTGG 61.112 57.895 8.83 0.00 0.00 4.17
1061 1073 1.062365 CATGGCGCGGTTGTATGTG 59.938 57.895 8.83 0.00 0.00 3.21
1062 1074 2.112198 CCATGGCGCGGTTGTATGT 61.112 57.895 8.83 0.00 0.00 2.29
1063 1075 1.653094 AACCATGGCGCGGTTGTATG 61.653 55.000 16.13 6.85 45.11 2.39
1064 1076 1.373590 GAACCATGGCGCGGTTGTAT 61.374 55.000 20.83 0.00 46.80 2.29
1065 1077 2.032834 AACCATGGCGCGGTTGTA 59.967 55.556 16.13 0.00 45.11 2.41
1066 1078 2.457743 TAGAACCATGGCGCGGTTGT 62.458 55.000 20.83 18.84 46.80 3.32
1067 1079 1.095228 ATAGAACCATGGCGCGGTTG 61.095 55.000 20.83 9.13 46.80 3.77
1069 1081 1.095228 CAATAGAACCATGGCGCGGT 61.095 55.000 13.04 0.00 38.85 5.68
1070 1082 1.095228 ACAATAGAACCATGGCGCGG 61.095 55.000 13.04 0.00 0.00 6.46
1071 1083 0.732571 AACAATAGAACCATGGCGCG 59.267 50.000 13.04 0.00 0.00 6.86
1072 1084 1.742831 TGAACAATAGAACCATGGCGC 59.257 47.619 13.04 0.00 0.00 6.53
1073 1085 3.427503 GGTTGAACAATAGAACCATGGCG 60.428 47.826 13.04 0.00 39.23 5.69
1074 1086 3.509575 TGGTTGAACAATAGAACCATGGC 59.490 43.478 13.04 0.00 43.34 4.40
1075 1087 5.476599 TCTTGGTTGAACAATAGAACCATGG 59.523 40.000 11.19 11.19 46.55 3.66
1076 1088 6.381801 GTCTTGGTTGAACAATAGAACCATG 58.618 40.000 0.00 0.00 46.55 3.66
1077 1089 5.476945 GGTCTTGGTTGAACAATAGAACCAT 59.523 40.000 0.00 0.00 46.55 3.55
1078 1090 4.825085 GGTCTTGGTTGAACAATAGAACCA 59.175 41.667 0.00 0.00 45.86 3.67
1079 1091 4.217767 GGGTCTTGGTTGAACAATAGAACC 59.782 45.833 10.48 10.48 39.77 3.62
1080 1092 5.070685 AGGGTCTTGGTTGAACAATAGAAC 58.929 41.667 0.00 0.00 0.00 3.01
1081 1093 5.319043 AGGGTCTTGGTTGAACAATAGAA 57.681 39.130 0.00 0.00 0.00 2.10
1082 1094 4.993705 AGGGTCTTGGTTGAACAATAGA 57.006 40.909 0.00 0.00 0.00 1.98
1083 1095 7.519032 TTTAAGGGTCTTGGTTGAACAATAG 57.481 36.000 0.00 0.00 0.00 1.73
1084 1096 6.015772 GCTTTAAGGGTCTTGGTTGAACAATA 60.016 38.462 0.00 0.00 0.00 1.90
1085 1097 5.221441 GCTTTAAGGGTCTTGGTTGAACAAT 60.221 40.000 0.00 0.00 0.00 2.71
1086 1098 4.098807 GCTTTAAGGGTCTTGGTTGAACAA 59.901 41.667 0.00 0.00 0.00 2.83
1087 1099 3.634910 GCTTTAAGGGTCTTGGTTGAACA 59.365 43.478 0.00 0.00 0.00 3.18
1088 1100 3.634910 TGCTTTAAGGGTCTTGGTTGAAC 59.365 43.478 0.00 0.00 0.00 3.18
1089 1101 3.904717 TGCTTTAAGGGTCTTGGTTGAA 58.095 40.909 0.00 0.00 0.00 2.69
1090 1102 3.586470 TGCTTTAAGGGTCTTGGTTGA 57.414 42.857 0.00 0.00 0.00 3.18
1091 1103 3.636764 AGTTGCTTTAAGGGTCTTGGTTG 59.363 43.478 0.00 0.00 0.00 3.77
1092 1104 3.889538 GAGTTGCTTTAAGGGTCTTGGTT 59.110 43.478 0.00 0.00 0.00 3.67
1093 1105 3.487372 GAGTTGCTTTAAGGGTCTTGGT 58.513 45.455 0.00 0.00 0.00 3.67
1094 1106 2.820197 GGAGTTGCTTTAAGGGTCTTGG 59.180 50.000 0.00 0.00 0.00 3.61
1095 1107 3.486383 TGGAGTTGCTTTAAGGGTCTTG 58.514 45.455 0.00 0.00 0.00 3.02
1096 1108 3.876309 TGGAGTTGCTTTAAGGGTCTT 57.124 42.857 0.00 0.00 0.00 3.01
1097 1109 3.487372 GTTGGAGTTGCTTTAAGGGTCT 58.513 45.455 0.00 0.00 0.00 3.85
1098 1110 2.225727 CGTTGGAGTTGCTTTAAGGGTC 59.774 50.000 0.00 0.00 0.00 4.46
1099 1111 2.227194 CGTTGGAGTTGCTTTAAGGGT 58.773 47.619 0.00 0.00 0.00 4.34
1100 1112 1.539827 CCGTTGGAGTTGCTTTAAGGG 59.460 52.381 0.00 0.00 0.00 3.95
1101 1113 1.539827 CCCGTTGGAGTTGCTTTAAGG 59.460 52.381 0.00 0.00 0.00 2.69
1102 1114 1.068541 GCCCGTTGGAGTTGCTTTAAG 60.069 52.381 0.00 0.00 0.00 1.85
1103 1115 0.955905 GCCCGTTGGAGTTGCTTTAA 59.044 50.000 0.00 0.00 0.00 1.52
1104 1116 1.231958 CGCCCGTTGGAGTTGCTTTA 61.232 55.000 0.00 0.00 0.00 1.85
1105 1117 2.551912 CGCCCGTTGGAGTTGCTTT 61.552 57.895 0.00 0.00 0.00 3.51
1106 1118 2.978010 CGCCCGTTGGAGTTGCTT 60.978 61.111 0.00 0.00 0.00 3.91
1107 1119 3.936203 TCGCCCGTTGGAGTTGCT 61.936 61.111 0.00 0.00 32.47 3.91
1108 1120 3.723348 GTCGCCCGTTGGAGTTGC 61.723 66.667 0.00 0.00 32.47 4.17
1118 1130 2.746803 GGACGAAATTGGTCGCCCG 61.747 63.158 2.20 0.00 45.00 6.13
1162 1175 1.202245 CGTTGGACCACCTTTTGTGTG 60.202 52.381 0.00 0.00 43.85 3.82
1173 1186 4.690719 AATCGGCGCGTTGGACCA 62.691 61.111 8.43 0.00 0.00 4.02
1176 1189 1.302383 ATTTGAATCGGCGCGTTGGA 61.302 50.000 8.43 2.80 0.00 3.53
1189 1202 2.857448 GACGCGCGTCCATTTGAA 59.143 55.556 44.30 0.00 39.08 2.69
1235 1248 0.958382 CCGGCTCAAAATTGGACCGA 60.958 55.000 21.40 0.00 44.36 4.69
1265 1278 3.348205 TTCGTCTCGTGTCCGCGA 61.348 61.111 8.23 2.72 39.22 5.87
1281 1294 1.728426 GAGTAGTCGCGCACACGTT 60.728 57.895 8.75 0.00 42.83 3.99
1285 1298 1.645704 GAGAGGAGTAGTCGCGCACA 61.646 60.000 8.75 0.00 0.00 4.57
1287 1300 2.113433 GGAGAGGAGTAGTCGCGCA 61.113 63.158 8.75 0.00 0.00 6.09
1293 1308 1.311747 GCCAGGGGAGAGGAGTAGT 59.688 63.158 0.00 0.00 0.00 2.73
1316 1331 4.408821 GATGGCTGCCACCGACCA 62.409 66.667 25.99 0.00 35.80 4.02
1332 1347 2.604139 GGTTTTGGGAGGAAATGGTGA 58.396 47.619 0.00 0.00 0.00 4.02
1343 1358 2.116556 GGCGGAAGGGTTTTGGGA 59.883 61.111 0.00 0.00 0.00 4.37
1380 1395 0.244450 GTCGTCGTCCATGGTTGGTA 59.756 55.000 12.58 0.00 44.06 3.25
1384 1399 1.590147 GAGGTCGTCGTCCATGGTT 59.410 57.895 12.58 0.00 0.00 3.67
1385 1400 2.697761 CGAGGTCGTCGTCCATGGT 61.698 63.158 12.58 0.00 44.20 3.55
2100 2126 4.467084 GGGAACGCCGATGAGCCA 62.467 66.667 0.00 0.00 33.83 4.75
2259 2298 2.920912 ACCGGTGTGTCGATGGGT 60.921 61.111 6.12 0.00 0.00 4.51
2617 2666 2.222027 CTCGAACAAAGGCTCCACTTT 58.778 47.619 0.00 0.00 41.12 2.66
2673 2722 2.501222 CGCTTGCTCTTGCGCTTG 60.501 61.111 9.73 0.65 45.50 4.01
2711 2769 1.230324 GCAAAGAAGCTTGTCCTCGT 58.770 50.000 2.10 0.00 0.00 4.18
2731 2789 1.202758 TCCAATGTCTCGCCAACACTT 60.203 47.619 0.00 0.00 0.00 3.16
2910 2972 4.021544 TCAAGAGTGGCACAAAACTTGTTT 60.022 37.500 27.67 7.35 44.16 2.83
3121 3194 2.731572 CAATGGGAGAGGTTGAAGCAT 58.268 47.619 0.00 0.00 0.00 3.79
3166 3239 2.357637 GGCATATTGCGCCTTGAACTTA 59.642 45.455 4.18 0.00 46.21 2.24
3253 3327 0.761323 TGGAGTTGGTCTTCACCCGA 60.761 55.000 0.00 0.00 42.99 5.14
3258 3332 3.045634 TCCTTCTTGGAGTTGGTCTTCA 58.954 45.455 0.00 0.00 40.56 3.02
3319 3393 0.697658 TGTTCATCATGCCCTCCACA 59.302 50.000 0.00 0.00 0.00 4.17
3360 3443 1.604278 GCTCTTCTTTGAAACGCTGGT 59.396 47.619 0.00 0.00 0.00 4.00
3363 3446 4.036734 TCATTTGCTCTTCTTTGAAACGCT 59.963 37.500 0.00 0.00 0.00 5.07
3495 3611 1.083806 GGTCATCATGCTCGCGACAA 61.084 55.000 3.71 0.00 0.00 3.18
3497 3613 2.580470 CGGTCATCATGCTCGCGAC 61.580 63.158 3.71 2.83 0.00 5.19
3575 3691 2.125106 GTCGGCCCGCATCTTCTT 60.125 61.111 0.00 0.00 0.00 2.52
3691 3812 1.002087 GTGGGACTTGAGTTCGACCAT 59.998 52.381 0.00 0.00 0.00 3.55
3715 3838 1.202440 ACACATGCCAGCACACAAAAG 60.202 47.619 0.00 0.00 0.00 2.27
3757 4443 0.319986 TCACCACACAATTCGCGCTA 60.320 50.000 5.56 0.00 0.00 4.26
3872 4957 5.392919 CCATTTTCATGTCCGCACTCAATTA 60.393 40.000 0.00 0.00 0.00 1.40
3971 5057 1.692296 GCGCATTTGTCCGCTTTTTA 58.308 45.000 0.30 0.00 46.14 1.52
4009 5096 1.692519 ACGGTAAGAGCAACTCCAACT 59.307 47.619 0.00 0.00 0.00 3.16
4027 5114 1.006832 CAAGGTAATCCCGCAAGACG 58.993 55.000 0.00 0.00 43.15 4.18
4028 5115 2.396590 TCAAGGTAATCCCGCAAGAC 57.603 50.000 0.00 0.00 43.02 3.01
4029 5116 3.644966 AATCAAGGTAATCCCGCAAGA 57.355 42.857 0.00 0.00 43.02 3.02
4030 5117 6.710744 ACTAATAATCAAGGTAATCCCGCAAG 59.289 38.462 0.00 0.00 38.74 4.01
4034 5121 8.848474 AATCACTAATAATCAAGGTAATCCCG 57.152 34.615 0.00 0.00 38.74 5.14
4074 5161 2.215196 GCAGCCATTAAATGCCCAATG 58.785 47.619 0.00 0.00 33.81 2.82
4075 5162 1.838715 TGCAGCCATTAAATGCCCAAT 59.161 42.857 0.00 0.00 39.22 3.16
4077 5164 1.498264 ATGCAGCCATTAAATGCCCA 58.502 45.000 0.00 0.11 39.22 5.36
4078 5165 2.215196 CAATGCAGCCATTAAATGCCC 58.785 47.619 0.00 0.00 39.60 5.36
4080 5167 4.154556 ACAAACAATGCAGCCATTAAATGC 59.845 37.500 0.00 0.00 39.60 3.56
4081 5168 5.866335 ACAAACAATGCAGCCATTAAATG 57.134 34.783 0.00 0.00 39.60 2.32
4084 5171 6.695429 TGAATACAAACAATGCAGCCATTAA 58.305 32.000 0.00 0.00 39.60 1.40
4088 5175 4.674885 CGATGAATACAAACAATGCAGCCA 60.675 41.667 0.00 0.00 0.00 4.75
4089 5176 3.792956 CGATGAATACAAACAATGCAGCC 59.207 43.478 0.00 0.00 0.00 4.85
4090 5177 4.496895 GTCGATGAATACAAACAATGCAGC 59.503 41.667 0.00 0.00 0.00 5.25
4091 5178 5.630061 TGTCGATGAATACAAACAATGCAG 58.370 37.500 0.00 0.00 0.00 4.41
4092 5179 5.619625 TGTCGATGAATACAAACAATGCA 57.380 34.783 0.00 0.00 0.00 3.96
4093 5180 7.376866 CCTAATGTCGATGAATACAAACAATGC 59.623 37.037 0.00 0.00 0.00 3.56
4094 5181 7.376866 GCCTAATGTCGATGAATACAAACAATG 59.623 37.037 0.00 0.00 0.00 2.82
4095 5182 7.066887 TGCCTAATGTCGATGAATACAAACAAT 59.933 33.333 0.00 0.00 0.00 2.71
4096 5183 6.372937 TGCCTAATGTCGATGAATACAAACAA 59.627 34.615 0.00 0.00 0.00 2.83
4098 5185 6.358118 TGCCTAATGTCGATGAATACAAAC 57.642 37.500 0.00 0.00 0.00 2.93
4099 5186 7.095229 GCTATGCCTAATGTCGATGAATACAAA 60.095 37.037 0.00 0.00 0.00 2.83
4101 5188 5.869344 GCTATGCCTAATGTCGATGAATACA 59.131 40.000 0.00 0.00 0.00 2.29
4102 5189 6.102663 AGCTATGCCTAATGTCGATGAATAC 58.897 40.000 0.00 0.00 0.00 1.89
4103 5190 6.286240 AGCTATGCCTAATGTCGATGAATA 57.714 37.500 0.00 0.00 0.00 1.75
4104 5191 5.157940 AGCTATGCCTAATGTCGATGAAT 57.842 39.130 0.00 0.00 0.00 2.57
4107 5194 4.993584 AGAAAGCTATGCCTAATGTCGATG 59.006 41.667 0.00 0.00 0.00 3.84
4109 5196 4.371786 CAGAAAGCTATGCCTAATGTCGA 58.628 43.478 0.00 0.00 0.00 4.20
4110 5197 3.059325 GCAGAAAGCTATGCCTAATGTCG 60.059 47.826 7.13 0.00 41.15 4.35
4124 5211 5.860716 CCTTTGTCTTTATCAAGCAGAAAGC 59.139 40.000 0.00 0.00 46.19 3.51
4125 5212 6.860023 CACCTTTGTCTTTATCAAGCAGAAAG 59.140 38.462 0.00 0.00 0.00 2.62
4126 5213 6.321181 ACACCTTTGTCTTTATCAAGCAGAAA 59.679 34.615 0.00 0.00 0.00 2.52
4128 5215 5.376625 ACACCTTTGTCTTTATCAAGCAGA 58.623 37.500 0.00 0.00 0.00 4.26
4206 5324 1.131218 CTCGCACGTTCGTAGTCGA 59.869 57.895 7.61 12.67 44.66 4.20
4264 5382 1.338674 TGCTCCGGTGTGGTCAATAAG 60.339 52.381 0.00 0.00 39.52 1.73
4510 5682 4.785376 CCCTTTCCTCCATATATACAGCCT 59.215 45.833 0.00 0.00 0.00 4.58
4647 5821 2.316108 CCAACTTAGTTTTGGGGCAGT 58.684 47.619 0.00 0.00 40.03 4.40
4659 5836 0.391130 TAGGTGCTGCGCCAACTTAG 60.391 55.000 31.64 0.00 36.32 2.18
4664 5841 0.035598 TACTTTAGGTGCTGCGCCAA 59.964 50.000 31.64 20.60 36.32 4.52
4681 5858 8.283291 CCTTCATAAATTTCGTCCATAGCTTAC 58.717 37.037 0.00 0.00 0.00 2.34
4808 5985 3.434739 GGATCAAGCATGGAGATGAAGGT 60.435 47.826 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.