Multiple sequence alignment - TraesCS2D01G273600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G273600 chr2D 100.000 4376 0 0 1 4376 340509843 340514218 0.000000e+00 8082.0
1 TraesCS2D01G273600 chr2D 82.868 537 72 14 1027 1554 340270360 340270885 8.570000e-127 464.0
2 TraesCS2D01G273600 chr2D 94.464 289 12 1 108 392 172735250 172735538 4.020000e-120 442.0
3 TraesCS2D01G273600 chr2D 92.833 293 15 3 103 390 375371070 375370779 1.880000e-113 420.0
4 TraesCS2D01G273600 chr2D 81.390 403 61 7 2407 2798 340271988 340272387 2.540000e-82 316.0
5 TraesCS2D01G273600 chr2D 87.983 233 28 0 1025 1257 430441971 430441739 4.310000e-70 276.0
6 TraesCS2D01G273600 chr2A 95.725 2433 85 13 1956 4376 450996161 450993736 0.000000e+00 3899.0
7 TraesCS2D01G273600 chr2A 94.608 1391 58 10 579 1963 450997668 450996289 0.000000e+00 2137.0
8 TraesCS2D01G273600 chr2A 83.426 537 69 14 1027 1554 451013650 451013125 8.510000e-132 481.0
9 TraesCS2D01G273600 chr2A 87.660 235 28 1 1021 1254 556986368 556986602 5.580000e-69 272.0
10 TraesCS2D01G273600 chr2A 91.579 190 16 0 2418 2607 451006154 451005965 3.360000e-66 263.0
11 TraesCS2D01G273600 chr2A 93.252 163 10 1 1631 1793 419206977 419206816 5.660000e-59 239.0
12 TraesCS2D01G273600 chr2B 97.425 1592 35 4 2257 3847 406279984 406281570 0.000000e+00 2708.0
13 TraesCS2D01G273600 chr2B 93.865 815 36 3 832 1646 406277145 406277945 0.000000e+00 1216.0
14 TraesCS2D01G273600 chr2B 92.675 587 11 5 1688 2270 406277948 406278506 0.000000e+00 817.0
15 TraesCS2D01G273600 chr2B 89.781 548 48 8 3835 4376 406401005 406401550 0.000000e+00 695.0
16 TraesCS2D01G273600 chr2B 83.426 537 69 13 1027 1554 406098743 406099268 8.510000e-132 481.0
17 TraesCS2D01G273600 chr2B 81.638 403 61 6 2407 2798 406115037 406115437 5.460000e-84 322.0
18 TraesCS2D01G273600 chr2B 81.538 195 25 4 649 836 406274906 406275096 2.730000e-32 150.0
19 TraesCS2D01G273600 chr5D 83.044 519 67 16 1041 1550 542992476 542991970 6.670000e-123 451.0
20 TraesCS2D01G273600 chr5D 93.220 295 16 3 102 392 315918880 315919174 8.690000e-117 431.0
21 TraesCS2D01G273600 chr5D 87.978 366 42 2 3010 3374 542991278 542990914 8.690000e-117 431.0
22 TraesCS2D01G273600 chr5B 82.885 520 70 14 1043 1553 684449050 684448541 2.400000e-122 449.0
23 TraesCS2D01G273600 chr5B 89.024 328 36 0 3047 3374 684447755 684447428 1.470000e-109 407.0
24 TraesCS2D01G273600 chr5B 88.889 171 17 2 390 558 294152515 294152345 4.430000e-50 209.0
25 TraesCS2D01G273600 chr5B 84.348 115 14 3 1 111 294152626 294152512 4.630000e-20 110.0
26 TraesCS2D01G273600 chr5B 90.769 65 6 0 490 554 699652217 699652281 2.170000e-13 87.9
27 TraesCS2D01G273600 chr5B 86.957 69 9 0 490 558 248734641 248734709 1.300000e-10 78.7
28 TraesCS2D01G273600 chr5B 91.667 48 2 2 510 556 56159454 56159408 1.020000e-06 65.8
29 TraesCS2D01G273600 chr7D 93.772 289 14 1 108 392 531437288 531437576 8.690000e-117 431.0
30 TraesCS2D01G273600 chr6D 93.793 290 13 2 108 393 107340548 107340836 8.690000e-117 431.0
31 TraesCS2D01G273600 chr6D 80.357 112 20 2 1434 1544 91842964 91843074 2.800000e-12 84.2
32 TraesCS2D01G273600 chr4A 87.978 366 42 2 3010 3374 626168241 626168605 8.690000e-117 431.0
33 TraesCS2D01G273600 chr4A 91.244 217 19 0 1037 1253 626164947 626165163 3.310000e-76 296.0
34 TraesCS2D01G273600 chr4A 79.793 386 67 11 2417 2793 626166425 626166808 2.010000e-68 270.0
35 TraesCS2D01G273600 chr3D 93.426 289 15 1 108 392 395050621 395050333 4.050000e-115 425.0
36 TraesCS2D01G273600 chr3D 90.909 308 22 5 107 408 228000474 228000167 4.070000e-110 409.0
37 TraesCS2D01G273600 chr3D 93.252 163 10 1 1631 1793 187836308 187836469 5.660000e-59 239.0
38 TraesCS2D01G273600 chr6B 93.080 289 16 1 108 392 424018417 424018705 1.880000e-113 420.0
39 TraesCS2D01G273600 chr6B 91.045 67 6 0 490 556 91116897 91116831 1.680000e-14 91.6
40 TraesCS2D01G273600 chr6B 78.947 114 22 2 1434 1546 176275118 176275230 4.690000e-10 76.8
41 TraesCS2D01G273600 chr6A 92.784 291 17 1 106 392 420018291 420018001 6.770000e-113 418.0
42 TraesCS2D01G273600 chr6A 80.702 114 20 2 1434 1546 111536213 111536325 2.170000e-13 87.9
43 TraesCS2D01G273600 chr7A 92.486 173 12 1 1624 1796 494786997 494786826 3.380000e-61 246.0
44 TraesCS2D01G273600 chr4D 92.814 167 11 1 1631 1797 64390632 64390467 1.570000e-59 241.0
45 TraesCS2D01G273600 chr4D 92.814 167 11 1 1627 1793 334164387 334164552 1.570000e-59 241.0
46 TraesCS2D01G273600 chr5A 93.252 163 10 1 1631 1793 320214244 320214405 5.660000e-59 239.0
47 TraesCS2D01G273600 chr5A 96.000 100 4 0 12 111 641424762 641424663 3.500000e-36 163.0
48 TraesCS2D01G273600 chr1D 93.252 163 10 1 1633 1795 132857672 132857833 5.660000e-59 239.0
49 TraesCS2D01G273600 chr7B 85.507 69 10 0 490 558 507668124 507668192 6.070000e-09 73.1
50 TraesCS2D01G273600 chr3A 91.111 45 3 1 512 556 39240982 39240939 4.730000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G273600 chr2D 340509843 340514218 4375 False 8082.000000 8082 100.000000 1 4376 1 chr2D.!!$F2 4375
1 TraesCS2D01G273600 chr2D 340270360 340272387 2027 False 390.000000 464 82.129000 1027 2798 2 chr2D.!!$F3 1771
2 TraesCS2D01G273600 chr2A 450993736 450997668 3932 True 3018.000000 3899 95.166500 579 4376 2 chr2A.!!$R4 3797
3 TraesCS2D01G273600 chr2A 451013125 451013650 525 True 481.000000 481 83.426000 1027 1554 1 chr2A.!!$R3 527
4 TraesCS2D01G273600 chr2B 406274906 406281570 6664 False 1222.750000 2708 91.375750 649 3847 4 chr2B.!!$F4 3198
5 TraesCS2D01G273600 chr2B 406401005 406401550 545 False 695.000000 695 89.781000 3835 4376 1 chr2B.!!$F3 541
6 TraesCS2D01G273600 chr2B 406098743 406099268 525 False 481.000000 481 83.426000 1027 1554 1 chr2B.!!$F1 527
7 TraesCS2D01G273600 chr5D 542990914 542992476 1562 True 441.000000 451 85.511000 1041 3374 2 chr5D.!!$R1 2333
8 TraesCS2D01G273600 chr5B 684447428 684449050 1622 True 428.000000 449 85.954500 1043 3374 2 chr5B.!!$R3 2331
9 TraesCS2D01G273600 chr4A 626164947 626168605 3658 False 332.333333 431 86.338333 1037 3374 3 chr4A.!!$F1 2337

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.036952 AACACTGAGAGTCATGCGGG 60.037 55.000 0.0 0.0 0.0 6.13 F
724 730 0.040067 GCCACGAGAACCTGCAAAAG 60.040 55.000 0.0 0.0 0.0 2.27 F
1526 3613 1.269448 AGCACCGCATCGACAAAAATT 59.731 42.857 0.0 0.0 0.0 1.82 F
1985 4208 2.879103 TCCCCAAAGTTCATCTCACC 57.121 50.000 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 3671 0.804989 GTCCAGCATCACCTTTTCGG 59.195 55.000 0.00 0.0 39.35 4.30 R
2243 4470 1.192534 GTGCAAGTTCACGACTGCTAC 59.807 52.381 0.00 0.0 39.00 3.58 R
3144 9270 0.549950 CCTGATGATGAACCCAGGCT 59.450 55.000 0.00 0.0 39.59 4.58 R
3966 10093 1.818959 CGAAACTCCGGGGTACACCA 61.819 60.000 16.12 0.0 42.91 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.641439 GAAACGATCGGTCATGTCTTG 57.359 47.619 20.98 0.00 0.00 3.02
21 22 2.743636 AACGATCGGTCATGTCTTGT 57.256 45.000 20.98 0.00 0.00 3.16
22 23 2.743636 ACGATCGGTCATGTCTTGTT 57.256 45.000 20.98 0.00 0.00 2.83
23 24 2.337583 ACGATCGGTCATGTCTTGTTG 58.662 47.619 20.98 0.00 0.00 3.33
24 25 2.029380 ACGATCGGTCATGTCTTGTTGA 60.029 45.455 20.98 0.00 0.00 3.18
25 26 2.993220 CGATCGGTCATGTCTTGTTGAA 59.007 45.455 7.38 0.00 0.00 2.69
26 27 3.618594 CGATCGGTCATGTCTTGTTGAAT 59.381 43.478 7.38 0.00 0.00 2.57
27 28 4.093408 CGATCGGTCATGTCTTGTTGAATT 59.907 41.667 7.38 0.00 0.00 2.17
28 29 5.551760 ATCGGTCATGTCTTGTTGAATTC 57.448 39.130 0.00 0.00 0.00 2.17
29 30 3.751175 TCGGTCATGTCTTGTTGAATTCC 59.249 43.478 2.27 0.00 0.00 3.01
30 31 3.119849 CGGTCATGTCTTGTTGAATTCCC 60.120 47.826 2.27 0.00 0.00 3.97
31 32 3.826157 GGTCATGTCTTGTTGAATTCCCA 59.174 43.478 2.27 0.00 0.00 4.37
32 33 4.321230 GGTCATGTCTTGTTGAATTCCCAC 60.321 45.833 2.27 0.40 0.00 4.61
33 34 3.501828 TCATGTCTTGTTGAATTCCCACG 59.498 43.478 2.27 0.00 0.00 4.94
34 35 3.201353 TGTCTTGTTGAATTCCCACGA 57.799 42.857 2.27 0.49 0.00 4.35
35 36 3.750371 TGTCTTGTTGAATTCCCACGAT 58.250 40.909 2.27 0.00 0.00 3.73
36 37 3.751175 TGTCTTGTTGAATTCCCACGATC 59.249 43.478 2.27 0.00 0.00 3.69
37 38 3.751175 GTCTTGTTGAATTCCCACGATCA 59.249 43.478 2.27 0.00 0.00 2.92
38 39 4.215399 GTCTTGTTGAATTCCCACGATCAA 59.785 41.667 2.27 0.00 0.00 2.57
39 40 5.009631 TCTTGTTGAATTCCCACGATCAAT 58.990 37.500 2.27 0.00 34.62 2.57
40 41 5.476599 TCTTGTTGAATTCCCACGATCAATT 59.523 36.000 2.27 0.00 34.62 2.32
41 42 5.309323 TGTTGAATTCCCACGATCAATTC 57.691 39.130 2.27 7.99 37.14 2.17
42 43 4.764308 TGTTGAATTCCCACGATCAATTCA 59.236 37.500 11.93 11.93 42.22 2.57
43 44 5.418524 TGTTGAATTCCCACGATCAATTCAT 59.581 36.000 15.13 0.00 42.98 2.57
44 45 5.503662 TGAATTCCCACGATCAATTCATG 57.496 39.130 11.93 0.00 40.15 3.07
45 46 4.949238 TGAATTCCCACGATCAATTCATGT 59.051 37.500 11.93 0.00 40.15 3.21
46 47 5.066375 TGAATTCCCACGATCAATTCATGTC 59.934 40.000 11.93 0.00 40.15 3.06
47 48 3.912496 TCCCACGATCAATTCATGTCT 57.088 42.857 0.00 0.00 0.00 3.41
48 49 3.797039 TCCCACGATCAATTCATGTCTC 58.203 45.455 0.00 0.00 0.00 3.36
49 50 3.452264 TCCCACGATCAATTCATGTCTCT 59.548 43.478 0.00 0.00 0.00 3.10
50 51 4.080919 TCCCACGATCAATTCATGTCTCTT 60.081 41.667 0.00 0.00 0.00 2.85
51 52 4.272018 CCCACGATCAATTCATGTCTCTTC 59.728 45.833 0.00 0.00 0.00 2.87
52 53 4.026228 CCACGATCAATTCATGTCTCTTCG 60.026 45.833 0.00 0.00 0.00 3.79
53 54 4.026228 CACGATCAATTCATGTCTCTTCGG 60.026 45.833 0.00 0.00 0.00 4.30
54 55 4.142160 ACGATCAATTCATGTCTCTTCGGA 60.142 41.667 0.00 0.00 0.00 4.55
55 56 4.987285 CGATCAATTCATGTCTCTTCGGAT 59.013 41.667 0.00 0.00 0.00 4.18
56 57 5.107568 CGATCAATTCATGTCTCTTCGGATG 60.108 44.000 0.00 0.00 0.00 3.51
57 58 3.873361 TCAATTCATGTCTCTTCGGATGC 59.127 43.478 0.00 0.00 0.00 3.91
58 59 2.315925 TTCATGTCTCTTCGGATGCC 57.684 50.000 0.00 0.00 0.00 4.40
59 60 1.489481 TCATGTCTCTTCGGATGCCT 58.511 50.000 0.00 0.00 0.00 4.75
60 61 1.137675 TCATGTCTCTTCGGATGCCTG 59.862 52.381 0.00 0.00 0.00 4.85
61 62 0.179062 ATGTCTCTTCGGATGCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
62 63 1.880340 GTCTCTTCGGATGCCTGCG 60.880 63.158 0.00 0.00 37.59 5.18
63 64 2.185350 CTCTTCGGATGCCTGCGT 59.815 61.111 2.50 0.00 37.50 5.24
64 65 1.880340 CTCTTCGGATGCCTGCGTC 60.880 63.158 2.50 2.69 37.50 5.19
65 66 2.125552 CTTCGGATGCCTGCGTCA 60.126 61.111 12.98 0.00 37.50 4.35
66 67 2.125552 TTCGGATGCCTGCGTCAG 60.126 61.111 12.98 9.14 37.50 3.51
67 68 2.842394 CTTCGGATGCCTGCGTCAGT 62.842 60.000 12.98 0.00 37.50 3.41
68 69 2.434884 CGGATGCCTGCGTCAGTT 60.435 61.111 12.98 0.00 33.86 3.16
69 70 2.456119 CGGATGCCTGCGTCAGTTC 61.456 63.158 12.98 0.00 33.86 3.01
70 71 2.109126 GGATGCCTGCGTCAGTTCC 61.109 63.158 12.98 5.85 33.86 3.62
71 72 1.375908 GATGCCTGCGTCAGTTCCA 60.376 57.895 6.48 1.95 32.55 3.53
72 73 1.364626 GATGCCTGCGTCAGTTCCAG 61.365 60.000 6.48 0.00 32.55 3.86
73 74 1.830587 ATGCCTGCGTCAGTTCCAGA 61.831 55.000 6.19 0.00 0.00 3.86
74 75 1.301716 GCCTGCGTCAGTTCCAGAA 60.302 57.895 6.19 0.00 0.00 3.02
75 76 1.569479 GCCTGCGTCAGTTCCAGAAC 61.569 60.000 2.19 2.19 41.45 3.01
76 77 0.249868 CCTGCGTCAGTTCCAGAACA 60.250 55.000 12.76 0.00 43.47 3.18
77 78 0.861837 CTGCGTCAGTTCCAGAACAC 59.138 55.000 12.76 2.66 43.47 3.32
78 79 0.464036 TGCGTCAGTTCCAGAACACT 59.536 50.000 12.76 0.00 43.47 3.55
79 80 0.861837 GCGTCAGTTCCAGAACACTG 59.138 55.000 12.76 3.53 43.47 3.66
80 81 1.538204 GCGTCAGTTCCAGAACACTGA 60.538 52.381 12.76 5.79 45.77 3.41
84 85 3.300388 TCAGTTCCAGAACACTGAGAGT 58.700 45.455 12.76 0.00 43.63 3.24
85 86 3.319405 TCAGTTCCAGAACACTGAGAGTC 59.681 47.826 12.76 0.00 43.63 3.36
86 87 3.068732 CAGTTCCAGAACACTGAGAGTCA 59.931 47.826 12.76 0.00 42.74 3.41
87 88 3.900601 AGTTCCAGAACACTGAGAGTCAT 59.099 43.478 12.76 0.00 43.47 3.06
88 89 3.949842 TCCAGAACACTGAGAGTCATG 57.050 47.619 0.00 0.00 33.94 3.07
89 90 2.028658 TCCAGAACACTGAGAGTCATGC 60.029 50.000 0.00 0.00 33.94 4.06
90 91 1.991264 CAGAACACTGAGAGTCATGCG 59.009 52.381 0.00 0.00 33.94 4.73
91 92 1.067283 AGAACACTGAGAGTCATGCGG 60.067 52.381 0.00 0.00 0.00 5.69
92 93 0.036952 AACACTGAGAGTCATGCGGG 60.037 55.000 0.00 0.00 0.00 6.13
93 94 1.188219 ACACTGAGAGTCATGCGGGT 61.188 55.000 0.00 0.00 0.00 5.28
94 95 0.817654 CACTGAGAGTCATGCGGGTA 59.182 55.000 0.00 0.00 0.00 3.69
95 96 1.410517 CACTGAGAGTCATGCGGGTAT 59.589 52.381 0.00 0.00 0.00 2.73
96 97 2.623416 CACTGAGAGTCATGCGGGTATA 59.377 50.000 0.00 0.00 0.00 1.47
97 98 2.623889 ACTGAGAGTCATGCGGGTATAC 59.376 50.000 0.00 0.00 0.00 1.47
98 99 1.607148 TGAGAGTCATGCGGGTATACG 59.393 52.381 0.00 0.00 0.00 3.06
99 100 0.959553 AGAGTCATGCGGGTATACGG 59.040 55.000 0.00 0.00 0.00 4.02
100 101 0.666577 GAGTCATGCGGGTATACGGC 60.667 60.000 9.82 9.82 44.86 5.68
105 106 2.663852 GCGGGTATACGGCGCAAT 60.664 61.111 10.83 3.27 35.64 3.56
106 107 2.950172 GCGGGTATACGGCGCAATG 61.950 63.158 10.83 0.00 35.64 2.82
107 108 1.593209 CGGGTATACGGCGCAATGT 60.593 57.895 10.83 7.11 0.00 2.71
108 109 1.155424 CGGGTATACGGCGCAATGTT 61.155 55.000 10.83 0.00 0.00 2.71
109 110 1.868469 GGGTATACGGCGCAATGTTA 58.132 50.000 10.83 0.00 0.00 2.41
110 111 1.796459 GGGTATACGGCGCAATGTTAG 59.204 52.381 10.83 0.00 0.00 2.34
111 112 2.546373 GGGTATACGGCGCAATGTTAGA 60.546 50.000 10.83 0.00 0.00 2.10
112 113 2.473984 GGTATACGGCGCAATGTTAGAC 59.526 50.000 10.83 0.00 0.00 2.59
113 114 2.596904 ATACGGCGCAATGTTAGACT 57.403 45.000 10.83 0.00 0.00 3.24
114 115 3.720949 ATACGGCGCAATGTTAGACTA 57.279 42.857 10.83 0.00 0.00 2.59
115 116 1.636988 ACGGCGCAATGTTAGACTAC 58.363 50.000 10.83 0.00 0.00 2.73
116 117 0.928229 CGGCGCAATGTTAGACTACC 59.072 55.000 10.83 0.00 0.00 3.18
117 118 1.296727 GGCGCAATGTTAGACTACCC 58.703 55.000 10.83 0.00 0.00 3.69
118 119 1.406341 GGCGCAATGTTAGACTACCCA 60.406 52.381 10.83 0.00 0.00 4.51
119 120 2.561569 GCGCAATGTTAGACTACCCAT 58.438 47.619 0.30 0.00 0.00 4.00
120 121 3.493699 GGCGCAATGTTAGACTACCCATA 60.494 47.826 10.83 0.00 0.00 2.74
121 122 3.741344 GCGCAATGTTAGACTACCCATAG 59.259 47.826 0.30 0.00 34.25 2.23
122 123 4.739735 GCGCAATGTTAGACTACCCATAGT 60.740 45.833 0.30 0.00 44.74 2.12
123 124 4.745125 CGCAATGTTAGACTACCCATAGTG 59.255 45.833 0.00 0.00 41.98 2.74
124 125 5.057149 GCAATGTTAGACTACCCATAGTGG 58.943 45.833 0.00 0.00 41.98 4.00
142 143 9.529823 CCATAGTGGGAGTAACATAGATAGTAA 57.470 37.037 0.00 0.00 32.67 2.24
146 147 9.080097 AGTGGGAGTAACATAGATAGTAACATC 57.920 37.037 0.00 0.00 0.00 3.06
147 148 8.857098 GTGGGAGTAACATAGATAGTAACATCA 58.143 37.037 0.00 0.00 0.00 3.07
148 149 8.857098 TGGGAGTAACATAGATAGTAACATCAC 58.143 37.037 0.00 0.00 0.00 3.06
149 150 8.857098 GGGAGTAACATAGATAGTAACATCACA 58.143 37.037 0.00 0.00 0.00 3.58
180 181 9.678941 TCTAAGTTAAATAGACGATGTAGCATG 57.321 33.333 0.00 0.00 0.00 4.06
181 182 6.771188 AGTTAAATAGACGATGTAGCATGC 57.229 37.500 10.51 10.51 0.00 4.06
182 183 6.280643 AGTTAAATAGACGATGTAGCATGCA 58.719 36.000 21.98 2.77 33.12 3.96
183 184 6.761242 AGTTAAATAGACGATGTAGCATGCAA 59.239 34.615 21.98 5.23 31.62 4.08
184 185 7.442364 AGTTAAATAGACGATGTAGCATGCAAT 59.558 33.333 21.98 10.41 31.62 3.56
185 186 8.708742 GTTAAATAGACGATGTAGCATGCAATA 58.291 33.333 21.98 5.28 31.62 1.90
186 187 7.728847 AAATAGACGATGTAGCATGCAATAA 57.271 32.000 21.98 2.36 31.62 1.40
187 188 7.728847 AATAGACGATGTAGCATGCAATAAA 57.271 32.000 21.98 0.00 31.62 1.40
188 189 7.912056 ATAGACGATGTAGCATGCAATAAAT 57.088 32.000 21.98 4.80 31.62 1.40
189 190 5.993891 AGACGATGTAGCATGCAATAAATG 58.006 37.500 21.98 6.34 31.62 2.32
190 191 5.759763 AGACGATGTAGCATGCAATAAATGA 59.240 36.000 21.98 0.00 31.62 2.57
191 192 6.260714 AGACGATGTAGCATGCAATAAATGAA 59.739 34.615 21.98 0.00 31.62 2.57
192 193 6.432936 ACGATGTAGCATGCAATAAATGAAG 58.567 36.000 21.98 3.64 31.62 3.02
193 194 6.260714 ACGATGTAGCATGCAATAAATGAAGA 59.739 34.615 21.98 0.00 31.62 2.87
194 195 7.134163 CGATGTAGCATGCAATAAATGAAGAA 58.866 34.615 21.98 0.00 31.62 2.52
195 196 7.644945 CGATGTAGCATGCAATAAATGAAGAAA 59.355 33.333 21.98 0.00 31.62 2.52
196 197 8.867112 ATGTAGCATGCAATAAATGAAGAAAG 57.133 30.769 21.98 0.00 31.62 2.62
197 198 8.054152 TGTAGCATGCAATAAATGAAGAAAGA 57.946 30.769 21.98 0.00 0.00 2.52
198 199 8.186163 TGTAGCATGCAATAAATGAAGAAAGAG 58.814 33.333 21.98 0.00 0.00 2.85
199 200 7.400599 AGCATGCAATAAATGAAGAAAGAGA 57.599 32.000 21.98 0.00 0.00 3.10
200 201 8.008513 AGCATGCAATAAATGAAGAAAGAGAT 57.991 30.769 21.98 0.00 0.00 2.75
201 202 9.128404 AGCATGCAATAAATGAAGAAAGAGATA 57.872 29.630 21.98 0.00 0.00 1.98
202 203 9.740239 GCATGCAATAAATGAAGAAAGAGATAA 57.260 29.630 14.21 0.00 0.00 1.75
256 257 9.716531 ATATGAGTAACATCACACATATCAAGG 57.283 33.333 0.00 0.00 37.86 3.61
257 258 7.181569 TGAGTAACATCACACATATCAAGGA 57.818 36.000 0.00 0.00 0.00 3.36
258 259 7.619965 TGAGTAACATCACACATATCAAGGAA 58.380 34.615 0.00 0.00 0.00 3.36
259 260 8.100164 TGAGTAACATCACACATATCAAGGAAA 58.900 33.333 0.00 0.00 0.00 3.13
260 261 8.498054 AGTAACATCACACATATCAAGGAAAG 57.502 34.615 0.00 0.00 0.00 2.62
261 262 8.321353 AGTAACATCACACATATCAAGGAAAGA 58.679 33.333 0.00 0.00 0.00 2.52
262 263 9.113838 GTAACATCACACATATCAAGGAAAGAT 57.886 33.333 0.00 0.00 0.00 2.40
263 264 7.563888 ACATCACACATATCAAGGAAAGATG 57.436 36.000 0.00 0.00 36.24 2.90
264 265 7.114754 ACATCACACATATCAAGGAAAGATGT 58.885 34.615 0.00 0.00 37.95 3.06
270 271 8.899427 CACATATCAAGGAAAGATGTGTCTAT 57.101 34.615 3.12 0.00 43.18 1.98
271 272 9.987272 CACATATCAAGGAAAGATGTGTCTATA 57.013 33.333 3.12 0.00 43.18 1.31
273 274 9.149225 CATATCAAGGAAAGATGTGTCTATAGC 57.851 37.037 0.00 0.00 33.30 2.97
274 275 5.918608 TCAAGGAAAGATGTGTCTATAGCC 58.081 41.667 0.00 0.00 33.30 3.93
275 276 5.663106 TCAAGGAAAGATGTGTCTATAGCCT 59.337 40.000 0.00 0.00 33.30 4.58
276 277 6.839134 TCAAGGAAAGATGTGTCTATAGCCTA 59.161 38.462 0.00 0.00 33.30 3.93
277 278 7.344612 TCAAGGAAAGATGTGTCTATAGCCTAA 59.655 37.037 0.00 0.00 33.30 2.69
278 279 7.863901 AGGAAAGATGTGTCTATAGCCTAAT 57.136 36.000 0.00 0.00 33.30 1.73
279 280 8.958060 AGGAAAGATGTGTCTATAGCCTAATA 57.042 34.615 0.00 0.00 33.30 0.98
280 281 9.381038 AGGAAAGATGTGTCTATAGCCTAATAA 57.619 33.333 0.00 0.00 33.30 1.40
281 282 9.998106 GGAAAGATGTGTCTATAGCCTAATAAA 57.002 33.333 0.00 0.00 33.30 1.40
288 289 9.764363 TGTGTCTATAGCCTAATAAATGAAGTG 57.236 33.333 0.00 0.00 0.00 3.16
289 290 9.765795 GTGTCTATAGCCTAATAAATGAAGTGT 57.234 33.333 0.00 0.00 0.00 3.55
292 293 9.998106 TCTATAGCCTAATAAATGAAGTGTTCC 57.002 33.333 0.00 0.00 0.00 3.62
293 294 9.778741 CTATAGCCTAATAAATGAAGTGTTCCA 57.221 33.333 0.00 0.00 0.00 3.53
295 296 7.338800 AGCCTAATAAATGAAGTGTTCCATG 57.661 36.000 0.00 0.00 0.00 3.66
296 297 6.891908 AGCCTAATAAATGAAGTGTTCCATGT 59.108 34.615 0.00 0.00 0.00 3.21
297 298 7.397192 AGCCTAATAAATGAAGTGTTCCATGTT 59.603 33.333 0.00 0.00 0.00 2.71
298 299 8.682710 GCCTAATAAATGAAGTGTTCCATGTTA 58.317 33.333 0.00 0.00 0.00 2.41
301 302 8.415950 AATAAATGAAGTGTTCCATGTTACCA 57.584 30.769 0.00 0.00 0.00 3.25
302 303 5.705609 AATGAAGTGTTCCATGTTACCAC 57.294 39.130 0.00 0.00 0.00 4.16
303 304 4.157849 TGAAGTGTTCCATGTTACCACA 57.842 40.909 0.00 0.00 37.31 4.17
304 305 3.880490 TGAAGTGTTCCATGTTACCACAC 59.120 43.478 0.00 0.00 38.43 3.82
305 306 3.569194 AGTGTTCCATGTTACCACACA 57.431 42.857 3.76 0.00 40.23 3.72
306 307 4.098914 AGTGTTCCATGTTACCACACAT 57.901 40.909 3.76 0.00 40.23 3.21
307 308 5.235850 AGTGTTCCATGTTACCACACATA 57.764 39.130 3.76 0.00 40.23 2.29
308 309 5.815581 AGTGTTCCATGTTACCACACATAT 58.184 37.500 3.76 0.00 40.23 1.78
309 310 5.647658 AGTGTTCCATGTTACCACACATATG 59.352 40.000 0.00 0.00 40.23 1.78
310 311 5.414454 GTGTTCCATGTTACCACACATATGT 59.586 40.000 1.41 1.41 40.80 2.29
311 312 6.007076 TGTTCCATGTTACCACACATATGTT 58.993 36.000 5.37 0.00 36.72 2.71
312 313 7.119992 GTGTTCCATGTTACCACACATATGTTA 59.880 37.037 5.37 0.00 36.72 2.41
313 314 7.119992 TGTTCCATGTTACCACACATATGTTAC 59.880 37.037 5.37 0.00 36.72 2.50
314 315 6.953101 TCCATGTTACCACACATATGTTACT 58.047 36.000 5.37 0.00 36.72 2.24
315 316 7.045416 TCCATGTTACCACACATATGTTACTC 58.955 38.462 5.37 0.00 36.72 2.59
316 317 6.260050 CCATGTTACCACACATATGTTACTCC 59.740 42.308 5.37 0.00 36.72 3.85
317 318 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
318 319 3.926058 ACCACACATATGTTACTCCCC 57.074 47.619 5.37 0.00 36.72 4.81
319 320 3.186283 ACCACACATATGTTACTCCCCA 58.814 45.455 5.37 0.00 36.72 4.96
320 321 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
321 322 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
322 323 4.407621 CCACACATATGTTACTCCCCACTA 59.592 45.833 5.37 0.00 36.72 2.74
323 324 5.071788 CCACACATATGTTACTCCCCACTAT 59.928 44.000 5.37 0.00 36.72 2.12
324 325 6.269077 CCACACATATGTTACTCCCCACTATA 59.731 42.308 5.37 0.00 36.72 1.31
325 326 7.202056 CCACACATATGTTACTCCCCACTATAA 60.202 40.741 5.37 0.00 36.72 0.98
326 327 8.208224 CACACATATGTTACTCCCCACTATAAA 58.792 37.037 5.37 0.00 36.72 1.40
327 328 8.429641 ACACATATGTTACTCCCCACTATAAAG 58.570 37.037 5.37 0.00 34.46 1.85
328 329 7.878127 CACATATGTTACTCCCCACTATAAAGG 59.122 40.741 5.37 0.00 0.00 3.11
329 330 7.571357 ACATATGTTACTCCCCACTATAAAGGT 59.429 37.037 1.41 0.00 0.00 3.50
330 331 9.096823 CATATGTTACTCCCCACTATAAAGGTA 57.903 37.037 0.00 0.00 0.00 3.08
331 332 6.796785 TGTTACTCCCCACTATAAAGGTAC 57.203 41.667 0.00 0.00 0.00 3.34
332 333 6.262980 TGTTACTCCCCACTATAAAGGTACA 58.737 40.000 0.00 0.00 0.00 2.90
333 334 6.904654 TGTTACTCCCCACTATAAAGGTACAT 59.095 38.462 0.00 0.00 0.00 2.29
334 335 8.066867 TGTTACTCCCCACTATAAAGGTACATA 58.933 37.037 0.00 0.00 0.00 2.29
335 336 8.583296 GTTACTCCCCACTATAAAGGTACATAG 58.417 40.741 0.00 0.00 0.00 2.23
336 337 6.930475 ACTCCCCACTATAAAGGTACATAGA 58.070 40.000 5.26 0.00 0.00 1.98
337 338 6.781507 ACTCCCCACTATAAAGGTACATAGAC 59.218 42.308 5.26 0.00 0.00 2.59
338 339 6.930475 TCCCCACTATAAAGGTACATAGACT 58.070 40.000 5.26 0.00 0.00 3.24
339 340 8.060727 TCCCCACTATAAAGGTACATAGACTA 57.939 38.462 5.26 0.00 0.00 2.59
340 341 8.168725 TCCCCACTATAAAGGTACATAGACTAG 58.831 40.741 5.26 0.00 0.00 2.57
341 342 7.949006 CCCCACTATAAAGGTACATAGACTAGT 59.051 40.741 0.00 0.00 0.00 2.57
349 350 8.834004 AAAGGTACATAGACTAGTAACATGGA 57.166 34.615 0.00 0.00 30.38 3.41
350 351 7.820578 AGGTACATAGACTAGTAACATGGAC 57.179 40.000 13.97 13.97 30.38 4.02
351 352 7.351952 AGGTACATAGACTAGTAACATGGACA 58.648 38.462 19.98 4.42 33.00 4.02
352 353 8.005388 AGGTACATAGACTAGTAACATGGACAT 58.995 37.037 19.98 14.14 33.00 3.06
353 354 8.082852 GGTACATAGACTAGTAACATGGACATG 58.917 40.741 19.98 10.57 44.15 3.21
370 371 9.464714 CATGGACATGTTACTAGTCTATGTTAC 57.535 37.037 18.04 13.55 42.61 2.50
371 372 8.818622 TGGACATGTTACTAGTCTATGTTACT 57.181 34.615 16.14 0.00 32.58 2.24
372 373 9.910267 TGGACATGTTACTAGTCTATGTTACTA 57.090 33.333 16.14 5.14 32.58 1.82
375 376 9.129532 ACATGTTACTAGTCTATGTTACTACCC 57.870 37.037 0.00 0.00 0.00 3.69
376 377 9.128404 CATGTTACTAGTCTATGTTACTACCCA 57.872 37.037 0.00 0.00 0.00 4.51
377 378 9.878737 ATGTTACTAGTCTATGTTACTACCCAT 57.121 33.333 0.00 0.00 0.00 4.00
378 379 9.705103 TGTTACTAGTCTATGTTACTACCCATT 57.295 33.333 0.00 0.00 0.00 3.16
379 380 9.962783 GTTACTAGTCTATGTTACTACCCATTG 57.037 37.037 0.00 0.00 0.00 2.82
380 381 9.705103 TTACTAGTCTATGTTACTACCCATTGT 57.295 33.333 0.00 0.00 0.00 2.71
381 382 8.008513 ACTAGTCTATGTTACTACCCATTGTG 57.991 38.462 0.00 0.00 0.00 3.33
382 383 6.235231 AGTCTATGTTACTACCCATTGTGG 57.765 41.667 0.00 0.00 37.25 4.17
383 384 4.814771 GTCTATGTTACTACCCATTGTGGC 59.185 45.833 0.00 0.00 35.79 5.01
384 385 4.719773 TCTATGTTACTACCCATTGTGGCT 59.280 41.667 0.00 0.00 35.79 4.75
385 386 5.900699 TCTATGTTACTACCCATTGTGGCTA 59.099 40.000 0.00 0.00 35.79 3.93
386 387 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
387 388 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
388 389 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
389 390 2.834113 ACTACCCATTGTGGCTAGTCT 58.166 47.619 0.00 0.00 35.79 3.24
390 391 3.182152 ACTACCCATTGTGGCTAGTCTT 58.818 45.455 0.00 0.00 35.79 3.01
391 392 4.359105 ACTACCCATTGTGGCTAGTCTTA 58.641 43.478 0.00 0.00 35.79 2.10
392 393 3.914426 ACCCATTGTGGCTAGTCTTAG 57.086 47.619 0.00 0.00 35.79 2.18
419 420 6.771188 CAGAGTTCTGTCACGAAAGTAAAT 57.229 37.500 0.91 0.00 39.99 1.40
420 421 6.584954 CAGAGTTCTGTCACGAAAGTAAATG 58.415 40.000 0.91 0.00 39.99 2.32
421 422 6.346919 CAGAGTTCTGTCACGAAAGTAAATGG 60.347 42.308 0.91 0.00 39.99 3.16
422 423 8.423647 CAGAGTTCTGTCACGAAAGTAAATGGA 61.424 40.741 0.91 0.00 39.99 3.41
430 431 4.832248 ACGAAAGTAAATGGATCAGAGCA 58.168 39.130 0.00 0.00 46.88 4.26
431 432 5.431765 ACGAAAGTAAATGGATCAGAGCAT 58.568 37.500 0.00 0.00 46.88 3.79
432 433 6.582636 ACGAAAGTAAATGGATCAGAGCATA 58.417 36.000 0.00 0.00 46.88 3.14
433 434 6.703607 ACGAAAGTAAATGGATCAGAGCATAG 59.296 38.462 0.00 0.00 46.88 2.23
434 435 6.146837 CGAAAGTAAATGGATCAGAGCATAGG 59.853 42.308 0.00 0.00 0.00 2.57
435 436 6.753913 AAGTAAATGGATCAGAGCATAGGA 57.246 37.500 0.00 0.00 0.00 2.94
436 437 6.753913 AGTAAATGGATCAGAGCATAGGAA 57.246 37.500 0.00 0.00 0.00 3.36
437 438 7.141758 AGTAAATGGATCAGAGCATAGGAAA 57.858 36.000 0.00 0.00 0.00 3.13
438 439 7.577303 AGTAAATGGATCAGAGCATAGGAAAA 58.423 34.615 0.00 0.00 0.00 2.29
439 440 8.223330 AGTAAATGGATCAGAGCATAGGAAAAT 58.777 33.333 0.00 0.00 0.00 1.82
440 441 7.521871 AAATGGATCAGAGCATAGGAAAATC 57.478 36.000 0.00 0.00 0.00 2.17
441 442 5.635278 TGGATCAGAGCATAGGAAAATCA 57.365 39.130 0.00 0.00 0.00 2.57
442 443 5.618236 TGGATCAGAGCATAGGAAAATCAG 58.382 41.667 0.00 0.00 0.00 2.90
443 444 5.367644 TGGATCAGAGCATAGGAAAATCAGA 59.632 40.000 0.00 0.00 0.00 3.27
444 445 6.126681 TGGATCAGAGCATAGGAAAATCAGAA 60.127 38.462 0.00 0.00 0.00 3.02
445 446 6.941436 GGATCAGAGCATAGGAAAATCAGAAT 59.059 38.462 0.00 0.00 0.00 2.40
446 447 8.099537 GGATCAGAGCATAGGAAAATCAGAATA 58.900 37.037 0.00 0.00 0.00 1.75
447 448 9.153721 GATCAGAGCATAGGAAAATCAGAATAG 57.846 37.037 0.00 0.00 0.00 1.73
448 449 8.255111 TCAGAGCATAGGAAAATCAGAATAGA 57.745 34.615 0.00 0.00 0.00 1.98
449 450 8.878211 TCAGAGCATAGGAAAATCAGAATAGAT 58.122 33.333 0.00 0.00 0.00 1.98
450 451 8.937884 CAGAGCATAGGAAAATCAGAATAGATG 58.062 37.037 0.00 0.00 0.00 2.90
451 452 8.878211 AGAGCATAGGAAAATCAGAATAGATGA 58.122 33.333 0.00 0.00 0.00 2.92
452 453 9.669887 GAGCATAGGAAAATCAGAATAGATGAT 57.330 33.333 0.00 0.00 39.06 2.45
479 480 7.174107 AGAATTGAGTAAAAATCATGTGGGG 57.826 36.000 0.00 0.00 0.00 4.96
480 481 6.725834 AGAATTGAGTAAAAATCATGTGGGGT 59.274 34.615 0.00 0.00 0.00 4.95
481 482 5.975693 TTGAGTAAAAATCATGTGGGGTC 57.024 39.130 0.00 0.00 0.00 4.46
482 483 5.255397 TGAGTAAAAATCATGTGGGGTCT 57.745 39.130 0.00 0.00 0.00 3.85
483 484 6.381498 TGAGTAAAAATCATGTGGGGTCTA 57.619 37.500 0.00 0.00 0.00 2.59
484 485 6.177610 TGAGTAAAAATCATGTGGGGTCTAC 58.822 40.000 0.00 0.00 0.00 2.59
485 486 6.012858 TGAGTAAAAATCATGTGGGGTCTACT 60.013 38.462 0.00 0.00 0.00 2.57
486 487 6.790319 AGTAAAAATCATGTGGGGTCTACTT 58.210 36.000 0.00 0.00 0.00 2.24
487 488 7.924541 AGTAAAAATCATGTGGGGTCTACTTA 58.075 34.615 0.00 0.00 0.00 2.24
488 489 8.387813 AGTAAAAATCATGTGGGGTCTACTTAA 58.612 33.333 0.00 0.00 0.00 1.85
489 490 9.185680 GTAAAAATCATGTGGGGTCTACTTAAT 57.814 33.333 0.00 0.00 0.00 1.40
490 491 7.645058 AAAATCATGTGGGGTCTACTTAATG 57.355 36.000 0.00 0.00 0.00 1.90
491 492 6.575244 AATCATGTGGGGTCTACTTAATGA 57.425 37.500 0.00 0.00 0.00 2.57
492 493 6.770286 ATCATGTGGGGTCTACTTAATGAT 57.230 37.500 0.00 0.00 0.00 2.45
493 494 5.928976 TCATGTGGGGTCTACTTAATGATG 58.071 41.667 0.00 0.00 0.00 3.07
494 495 5.428457 TCATGTGGGGTCTACTTAATGATGT 59.572 40.000 0.00 0.00 0.00 3.06
495 496 5.097742 TGTGGGGTCTACTTAATGATGTG 57.902 43.478 0.00 0.00 0.00 3.21
496 497 4.780554 TGTGGGGTCTACTTAATGATGTGA 59.219 41.667 0.00 0.00 0.00 3.58
497 498 5.249622 TGTGGGGTCTACTTAATGATGTGAA 59.750 40.000 0.00 0.00 0.00 3.18
498 499 6.069673 TGTGGGGTCTACTTAATGATGTGAAT 60.070 38.462 0.00 0.00 0.00 2.57
499 500 7.126573 TGTGGGGTCTACTTAATGATGTGAATA 59.873 37.037 0.00 0.00 0.00 1.75
500 501 7.657761 GTGGGGTCTACTTAATGATGTGAATAG 59.342 40.741 0.00 0.00 0.00 1.73
501 502 7.162082 GGGGTCTACTTAATGATGTGAATAGG 58.838 42.308 0.00 0.00 0.00 2.57
502 503 6.651225 GGGTCTACTTAATGATGTGAATAGGC 59.349 42.308 0.00 0.00 0.00 3.93
503 504 7.445945 GGTCTACTTAATGATGTGAATAGGCT 58.554 38.462 0.00 0.00 0.00 4.58
504 505 7.386299 GGTCTACTTAATGATGTGAATAGGCTG 59.614 40.741 0.00 0.00 0.00 4.85
505 506 7.386299 GTCTACTTAATGATGTGAATAGGCTGG 59.614 40.741 0.00 0.00 0.00 4.85
506 507 6.252599 ACTTAATGATGTGAATAGGCTGGA 57.747 37.500 0.00 0.00 0.00 3.86
507 508 6.845908 ACTTAATGATGTGAATAGGCTGGAT 58.154 36.000 0.00 0.00 0.00 3.41
508 509 7.977818 ACTTAATGATGTGAATAGGCTGGATA 58.022 34.615 0.00 0.00 0.00 2.59
509 510 8.609483 ACTTAATGATGTGAATAGGCTGGATAT 58.391 33.333 0.00 0.00 0.00 1.63
510 511 9.107177 CTTAATGATGTGAATAGGCTGGATATC 57.893 37.037 0.00 0.00 0.00 1.63
511 512 6.631763 ATGATGTGAATAGGCTGGATATCA 57.368 37.500 4.83 0.50 0.00 2.15
512 513 6.438186 TGATGTGAATAGGCTGGATATCAA 57.562 37.500 4.83 0.00 0.00 2.57
513 514 6.470278 TGATGTGAATAGGCTGGATATCAAG 58.530 40.000 2.35 2.35 0.00 3.02
514 515 6.270695 TGATGTGAATAGGCTGGATATCAAGA 59.729 38.462 11.59 0.00 0.00 3.02
515 516 6.106648 TGTGAATAGGCTGGATATCAAGAG 57.893 41.667 11.59 1.56 0.00 2.85
516 517 5.840693 TGTGAATAGGCTGGATATCAAGAGA 59.159 40.000 11.59 0.00 0.00 3.10
517 518 6.327365 TGTGAATAGGCTGGATATCAAGAGAA 59.673 38.462 11.59 0.00 0.00 2.87
518 519 7.147497 TGTGAATAGGCTGGATATCAAGAGAAA 60.147 37.037 11.59 0.00 0.00 2.52
519 520 7.882271 GTGAATAGGCTGGATATCAAGAGAAAT 59.118 37.037 11.59 0.00 0.00 2.17
520 521 9.104713 TGAATAGGCTGGATATCAAGAGAAATA 57.895 33.333 11.59 0.00 0.00 1.40
521 522 9.950496 GAATAGGCTGGATATCAAGAGAAATAA 57.050 33.333 11.59 0.00 0.00 1.40
522 523 9.956640 AATAGGCTGGATATCAAGAGAAATAAG 57.043 33.333 11.59 0.00 0.00 1.73
523 524 7.623999 AGGCTGGATATCAAGAGAAATAAGA 57.376 36.000 11.59 0.00 0.00 2.10
524 525 8.217188 AGGCTGGATATCAAGAGAAATAAGAT 57.783 34.615 11.59 0.00 0.00 2.40
525 526 9.331466 AGGCTGGATATCAAGAGAAATAAGATA 57.669 33.333 11.59 0.00 0.00 1.98
526 527 9.598517 GGCTGGATATCAAGAGAAATAAGATAG 57.401 37.037 11.59 0.00 0.00 2.08
535 536 9.426534 TCAAGAGAAATAAGATAGTGAGGATGA 57.573 33.333 0.00 0.00 0.00 2.92
565 566 9.998106 ATTTAGGTATTATAGATGTTTCGTGCT 57.002 29.630 0.00 0.00 0.00 4.40
566 567 9.826574 TTTAGGTATTATAGATGTTTCGTGCTT 57.173 29.630 0.00 0.00 0.00 3.91
567 568 7.948278 AGGTATTATAGATGTTTCGTGCTTC 57.052 36.000 0.00 0.00 0.00 3.86
568 569 6.641314 AGGTATTATAGATGTTTCGTGCTTCG 59.359 38.462 0.00 0.00 41.41 3.79
569 570 6.420008 GGTATTATAGATGTTTCGTGCTTCGT 59.580 38.462 2.39 0.00 40.80 3.85
570 571 5.696260 TTATAGATGTTTCGTGCTTCGTG 57.304 39.130 2.39 0.00 40.80 4.35
571 572 0.512952 AGATGTTTCGTGCTTCGTGC 59.487 50.000 2.39 0.00 40.80 5.34
572 573 0.512952 GATGTTTCGTGCTTCGTGCT 59.487 50.000 5.00 0.00 43.37 4.40
573 574 0.512952 ATGTTTCGTGCTTCGTGCTC 59.487 50.000 5.00 1.10 43.37 4.26
574 575 0.529773 TGTTTCGTGCTTCGTGCTCT 60.530 50.000 5.00 0.00 43.37 4.09
575 576 1.269361 TGTTTCGTGCTTCGTGCTCTA 60.269 47.619 5.00 0.00 43.37 2.43
576 577 1.993370 GTTTCGTGCTTCGTGCTCTAT 59.007 47.619 5.00 0.00 43.37 1.98
577 578 1.629013 TTCGTGCTTCGTGCTCTATG 58.371 50.000 5.00 0.00 43.37 2.23
599 600 3.507622 GCTTTTGCTATTCCCAGTCAAGT 59.492 43.478 0.00 0.00 43.35 3.16
609 610 7.755373 GCTATTCCCAGTCAAGTTGTTATTTTC 59.245 37.037 2.11 0.00 0.00 2.29
610 611 5.682943 TCCCAGTCAAGTTGTTATTTTCG 57.317 39.130 2.11 0.00 0.00 3.46
627 628 2.880822 TCGACCACGACTTAACGTAG 57.119 50.000 0.00 0.00 44.76 3.51
717 723 2.338984 GACGTGCCACGAGAACCT 59.661 61.111 25.94 0.00 46.05 3.50
723 729 0.749818 TGCCACGAGAACCTGCAAAA 60.750 50.000 0.00 0.00 0.00 2.44
724 730 0.040067 GCCACGAGAACCTGCAAAAG 60.040 55.000 0.00 0.00 0.00 2.27
728 734 3.181491 CCACGAGAACCTGCAAAAGAAAA 60.181 43.478 0.00 0.00 0.00 2.29
771 782 5.417894 ACACGTGATGAGGTCTACTTCATTA 59.582 40.000 25.01 2.87 41.85 1.90
858 2922 2.251893 GGAAACTCTACGCTCGTCAAG 58.748 52.381 0.00 0.55 0.00 3.02
1414 3501 1.591158 GTCTCGTTCGCAGACAACAAA 59.409 47.619 14.63 0.00 40.18 2.83
1526 3613 1.269448 AGCACCGCATCGACAAAAATT 59.731 42.857 0.00 0.00 0.00 1.82
1584 3671 8.336080 GCCACTTATCTATTTTGTTAGCTACAC 58.664 37.037 0.00 0.00 36.21 2.90
1825 3913 6.424176 CTTCTCCCGAAAAGAAGGATAAAC 57.576 41.667 11.39 0.00 43.90 2.01
1985 4208 2.879103 TCCCCAAAGTTCATCTCACC 57.121 50.000 0.00 0.00 0.00 4.02
2272 5990 3.252215 TCGTGAACTTGCACCATTTTAGG 59.748 43.478 0.00 0.00 35.37 2.69
2335 6053 9.857957 TTATGTTACTGTCATATACAACGTGAA 57.142 29.630 0.00 0.00 37.74 3.18
2551 7329 3.515502 TCCTATTACTGCAGTTCAGCTGT 59.484 43.478 27.06 0.00 46.76 4.40
2955 9081 9.620660 CACATACCTTTTCTTAATTTAAACGCT 57.379 29.630 0.00 0.00 0.00 5.07
3027 9153 6.506147 TGTCCATTTCACTGAAAACTTCATG 58.494 36.000 8.28 1.66 39.30 3.07
3090 9216 8.964476 TTGAGAAGAATACCCTGATATTTGAC 57.036 34.615 0.00 0.00 0.00 3.18
3144 9270 3.305267 GCACACCATCACAACTTGCATTA 60.305 43.478 0.00 0.00 0.00 1.90
3327 9454 2.674796 ACTCTGAAATGGCGAGTACC 57.325 50.000 0.00 0.00 36.33 3.34
3393 9520 4.985538 AGTAGCCATTTTTCTTCAGTGGA 58.014 39.130 0.00 0.00 31.59 4.02
3489 9616 3.950397 TGGACTCCTATTGTTGCGAATT 58.050 40.909 0.00 0.00 0.00 2.17
3604 9731 7.540745 GTGCTACATAAAGGTGTGGTAAAAATG 59.459 37.037 0.00 0.00 33.61 2.32
3668 9795 8.545229 TTGGGTTATATTTTTGTGAAAGCATG 57.455 30.769 0.00 0.00 0.00 4.06
3677 9804 2.373224 TGTGAAAGCATGTGGACACAA 58.627 42.857 9.42 0.00 45.41 3.33
3825 9952 6.230472 TCTTTGAATCCTCGAGATTTGTGAA 58.770 36.000 15.71 0.00 45.52 3.18
3832 9959 5.304778 TCCTCGAGATTTGTGAATGTTTGA 58.695 37.500 15.71 0.00 0.00 2.69
3842 9969 3.882888 TGTGAATGTTTGAGTGGAGGAAC 59.117 43.478 0.00 0.00 0.00 3.62
3883 10010 1.749286 CGAGTTCAAACAAGGGTGGGT 60.749 52.381 0.00 0.00 0.00 4.51
3966 10093 7.180051 TCAAATCTTACAATTATTGGGCCACTT 59.820 33.333 5.23 0.00 34.12 3.16
4022 10149 2.123251 GGCTCCCCTGAGATCCGA 60.123 66.667 0.00 0.00 41.42 4.55
4034 10161 0.105760 AGATCCGAGCCATGAGACCT 60.106 55.000 0.00 0.00 0.00 3.85
4069 10196 1.600636 CAAGAGGGCGAGCCAACAA 60.601 57.895 16.65 0.00 37.98 2.83
4116 10243 4.227134 CGGAGGTCTGGCCCATCG 62.227 72.222 0.00 0.00 38.26 3.84
4140 10267 1.609061 GGTGATGCCATGGATACCTCG 60.609 57.143 18.40 0.00 37.17 4.63
4151 10278 0.889306 GATACCTCGAAGATCCCGGG 59.111 60.000 16.85 16.85 33.89 5.73
4154 10281 2.499827 CCTCGAAGATCCCGGGGTC 61.500 68.421 27.52 27.52 42.45 4.46
4178 10305 1.292242 AGAGAGGGAGCCATAGGAACA 59.708 52.381 0.00 0.00 0.00 3.18
4179 10306 2.119495 GAGAGGGAGCCATAGGAACAA 58.881 52.381 0.00 0.00 0.00 2.83
4246 10418 2.283604 AAACCATTGGACCCCGGC 60.284 61.111 10.37 0.00 0.00 6.13
4247 10419 4.733542 AACCATTGGACCCCGGCG 62.734 66.667 10.37 0.00 0.00 6.46
4249 10421 4.189580 CCATTGGACCCCGGCGAT 62.190 66.667 9.30 0.00 0.00 4.58
4250 10422 2.591715 CATTGGACCCCGGCGATC 60.592 66.667 9.30 2.42 0.00 3.69
4251 10423 3.873812 ATTGGACCCCGGCGATCC 61.874 66.667 9.30 13.18 0.00 3.36
4263 10435 2.067414 GGCGATCCGATTCTTAGACC 57.933 55.000 0.00 0.00 0.00 3.85
4264 10436 1.336980 GGCGATCCGATTCTTAGACCC 60.337 57.143 0.00 0.00 0.00 4.46
4265 10437 1.666311 GCGATCCGATTCTTAGACCCG 60.666 57.143 0.00 0.00 0.00 5.28
4266 10438 1.068472 CGATCCGATTCTTAGACCCGG 60.068 57.143 13.13 13.13 41.36 5.73
4295 10467 2.158943 GGGGCACTAGAAGGATGTGTAC 60.159 54.545 0.00 0.00 34.52 2.90
4345 10517 8.420222 TGAATTTGATGTGTAGTTGGATGTTTT 58.580 29.630 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.040147 ACAAGACATGACCGATCGTTT 57.960 42.857 15.09 0.00 0.00 3.60
2 3 2.736721 CAACAAGACATGACCGATCGTT 59.263 45.455 15.09 0.00 0.00 3.85
3 4 2.029380 TCAACAAGACATGACCGATCGT 60.029 45.455 15.09 1.83 0.00 3.73
4 5 2.606108 TCAACAAGACATGACCGATCG 58.394 47.619 8.51 8.51 0.00 3.69
5 6 5.447818 GGAATTCAACAAGACATGACCGATC 60.448 44.000 7.93 0.00 0.00 3.69
6 7 4.396166 GGAATTCAACAAGACATGACCGAT 59.604 41.667 7.93 0.00 0.00 4.18
7 8 3.751175 GGAATTCAACAAGACATGACCGA 59.249 43.478 7.93 0.00 0.00 4.69
8 9 3.119849 GGGAATTCAACAAGACATGACCG 60.120 47.826 7.93 0.00 0.00 4.79
9 10 3.826157 TGGGAATTCAACAAGACATGACC 59.174 43.478 7.93 0.00 0.00 4.02
10 11 4.613622 CGTGGGAATTCAACAAGACATGAC 60.614 45.833 7.93 0.00 0.00 3.06
11 12 3.501828 CGTGGGAATTCAACAAGACATGA 59.498 43.478 7.93 0.00 0.00 3.07
12 13 3.501828 TCGTGGGAATTCAACAAGACATG 59.498 43.478 7.93 0.00 0.00 3.21
13 14 3.750371 TCGTGGGAATTCAACAAGACAT 58.250 40.909 7.93 0.00 0.00 3.06
14 15 3.201353 TCGTGGGAATTCAACAAGACA 57.799 42.857 7.93 0.00 0.00 3.41
15 16 3.751175 TGATCGTGGGAATTCAACAAGAC 59.249 43.478 16.05 12.00 0.00 3.01
16 17 4.014569 TGATCGTGGGAATTCAACAAGA 57.985 40.909 16.05 16.05 0.00 3.02
17 18 4.764679 TTGATCGTGGGAATTCAACAAG 57.235 40.909 7.93 8.18 0.00 3.16
18 19 5.242615 TGAATTGATCGTGGGAATTCAACAA 59.757 36.000 13.06 0.00 41.09 2.83
19 20 4.764308 TGAATTGATCGTGGGAATTCAACA 59.236 37.500 13.06 2.80 41.09 3.33
20 21 5.309323 TGAATTGATCGTGGGAATTCAAC 57.691 39.130 13.06 4.20 41.09 3.18
21 22 5.893687 CATGAATTGATCGTGGGAATTCAA 58.106 37.500 17.23 6.30 44.86 2.69
22 23 5.503662 CATGAATTGATCGTGGGAATTCA 57.496 39.130 16.19 16.19 45.44 2.57
31 32 4.115516 CCGAAGAGACATGAATTGATCGT 58.884 43.478 0.00 0.00 0.00 3.73
32 33 4.363138 TCCGAAGAGACATGAATTGATCG 58.637 43.478 0.00 2.26 0.00 3.69
33 34 5.333952 GCATCCGAAGAGACATGAATTGATC 60.334 44.000 0.00 0.00 0.00 2.92
34 35 4.514441 GCATCCGAAGAGACATGAATTGAT 59.486 41.667 0.00 0.00 0.00 2.57
35 36 3.873361 GCATCCGAAGAGACATGAATTGA 59.127 43.478 0.00 0.00 0.00 2.57
36 37 3.003068 GGCATCCGAAGAGACATGAATTG 59.997 47.826 0.00 0.00 0.00 2.32
37 38 3.118112 AGGCATCCGAAGAGACATGAATT 60.118 43.478 0.00 0.00 0.00 2.17
38 39 2.437281 AGGCATCCGAAGAGACATGAAT 59.563 45.455 0.00 0.00 0.00 2.57
39 40 1.833630 AGGCATCCGAAGAGACATGAA 59.166 47.619 0.00 0.00 0.00 2.57
40 41 1.137675 CAGGCATCCGAAGAGACATGA 59.862 52.381 0.00 0.00 0.00 3.07
41 42 1.579698 CAGGCATCCGAAGAGACATG 58.420 55.000 0.00 0.00 0.00 3.21
42 43 0.179062 GCAGGCATCCGAAGAGACAT 60.179 55.000 0.00 0.00 0.00 3.06
43 44 1.219124 GCAGGCATCCGAAGAGACA 59.781 57.895 0.00 0.00 0.00 3.41
44 45 1.880340 CGCAGGCATCCGAAGAGAC 60.880 63.158 0.00 0.00 0.00 3.36
45 46 2.284798 GACGCAGGCATCCGAAGAGA 62.285 60.000 0.00 0.00 0.00 3.10
46 47 1.880340 GACGCAGGCATCCGAAGAG 60.880 63.158 0.00 0.00 0.00 2.85
47 48 2.184322 GACGCAGGCATCCGAAGA 59.816 61.111 0.00 0.00 0.00 2.87
48 49 2.125552 TGACGCAGGCATCCGAAG 60.126 61.111 0.00 0.00 0.00 3.79
49 50 2.125552 CTGACGCAGGCATCCGAA 60.126 61.111 0.00 0.00 0.00 4.30
50 51 2.835701 GAACTGACGCAGGCATCCGA 62.836 60.000 10.80 0.00 35.51 4.55
51 52 2.434884 AACTGACGCAGGCATCCG 60.435 61.111 10.80 0.00 35.51 4.18
52 53 2.109126 GGAACTGACGCAGGCATCC 61.109 63.158 10.80 10.57 35.51 3.51
53 54 1.364626 CTGGAACTGACGCAGGCATC 61.365 60.000 10.80 6.47 35.51 3.91
54 55 1.376424 CTGGAACTGACGCAGGCAT 60.376 57.895 10.80 0.00 35.51 4.40
55 56 2.031012 CTGGAACTGACGCAGGCA 59.969 61.111 10.80 0.00 35.51 4.75
56 57 1.301716 TTCTGGAACTGACGCAGGC 60.302 57.895 10.80 3.56 35.62 4.85
57 58 0.249868 TGTTCTGGAACTGACGCAGG 60.250 55.000 13.54 0.00 41.67 4.85
58 59 0.861837 GTGTTCTGGAACTGACGCAG 59.138 55.000 13.54 5.47 41.67 5.18
59 60 0.464036 AGTGTTCTGGAACTGACGCA 59.536 50.000 13.54 0.00 41.67 5.24
60 61 0.861837 CAGTGTTCTGGAACTGACGC 59.138 55.000 13.54 0.00 45.43 5.19
61 62 2.034685 TCTCAGTGTTCTGGAACTGACG 59.965 50.000 13.54 5.70 45.97 4.35
62 63 3.068873 ACTCTCAGTGTTCTGGAACTGAC 59.931 47.826 13.54 5.66 45.97 3.51
64 65 3.068732 TGACTCTCAGTGTTCTGGAACTG 59.931 47.826 13.54 5.75 44.23 3.16
65 66 3.300388 TGACTCTCAGTGTTCTGGAACT 58.700 45.455 13.54 0.00 41.67 3.01
66 67 3.735237 TGACTCTCAGTGTTCTGGAAC 57.265 47.619 6.53 6.53 41.59 3.62
67 68 3.555795 GCATGACTCTCAGTGTTCTGGAA 60.556 47.826 0.00 0.00 41.59 3.53
68 69 2.028658 GCATGACTCTCAGTGTTCTGGA 60.029 50.000 0.00 0.00 41.59 3.86
69 70 2.344950 GCATGACTCTCAGTGTTCTGG 58.655 52.381 0.00 0.00 41.59 3.86
70 71 1.991264 CGCATGACTCTCAGTGTTCTG 59.009 52.381 0.00 0.00 42.54 3.02
71 72 1.067283 CCGCATGACTCTCAGTGTTCT 60.067 52.381 0.00 0.00 0.00 3.01
72 73 1.354040 CCGCATGACTCTCAGTGTTC 58.646 55.000 0.00 0.00 0.00 3.18
73 74 0.036952 CCCGCATGACTCTCAGTGTT 60.037 55.000 0.00 0.00 0.00 3.32
74 75 1.188219 ACCCGCATGACTCTCAGTGT 61.188 55.000 0.00 0.00 0.00 3.55
75 76 0.817654 TACCCGCATGACTCTCAGTG 59.182 55.000 0.00 0.00 0.00 3.66
76 77 1.781786 ATACCCGCATGACTCTCAGT 58.218 50.000 0.00 0.00 0.00 3.41
77 78 2.350868 CGTATACCCGCATGACTCTCAG 60.351 54.545 0.00 0.00 0.00 3.35
78 79 1.607148 CGTATACCCGCATGACTCTCA 59.393 52.381 0.00 0.00 0.00 3.27
79 80 1.068472 CCGTATACCCGCATGACTCTC 60.068 57.143 0.00 0.00 0.00 3.20
80 81 0.959553 CCGTATACCCGCATGACTCT 59.040 55.000 0.00 0.00 0.00 3.24
81 82 0.666577 GCCGTATACCCGCATGACTC 60.667 60.000 0.00 0.00 0.00 3.36
82 83 1.366366 GCCGTATACCCGCATGACT 59.634 57.895 0.00 0.00 0.00 3.41
83 84 2.019951 CGCCGTATACCCGCATGAC 61.020 63.158 0.00 0.00 0.00 3.06
84 85 2.337170 CGCCGTATACCCGCATGA 59.663 61.111 0.00 0.00 0.00 3.07
85 86 3.411351 GCGCCGTATACCCGCATG 61.411 66.667 22.99 5.73 46.32 4.06
89 90 1.155424 AACATTGCGCCGTATACCCG 61.155 55.000 4.18 1.87 0.00 5.28
90 91 1.796459 CTAACATTGCGCCGTATACCC 59.204 52.381 4.18 0.00 0.00 3.69
91 92 2.473984 GTCTAACATTGCGCCGTATACC 59.526 50.000 4.18 0.00 0.00 2.73
92 93 3.378339 AGTCTAACATTGCGCCGTATAC 58.622 45.455 4.18 0.00 0.00 1.47
93 94 3.720949 AGTCTAACATTGCGCCGTATA 57.279 42.857 4.18 0.00 0.00 1.47
94 95 2.596904 AGTCTAACATTGCGCCGTAT 57.403 45.000 4.18 0.00 0.00 3.06
95 96 2.480073 GGTAGTCTAACATTGCGCCGTA 60.480 50.000 4.18 0.00 0.00 4.02
96 97 1.636988 GTAGTCTAACATTGCGCCGT 58.363 50.000 4.18 0.00 0.00 5.68
97 98 0.928229 GGTAGTCTAACATTGCGCCG 59.072 55.000 4.18 0.00 0.00 6.46
98 99 1.296727 GGGTAGTCTAACATTGCGCC 58.703 55.000 4.18 0.00 0.00 6.53
99 100 2.018542 TGGGTAGTCTAACATTGCGC 57.981 50.000 0.00 0.00 0.00 6.09
100 101 4.745125 CACTATGGGTAGTCTAACATTGCG 59.255 45.833 0.00 0.00 39.12 4.85
101 102 5.057149 CCACTATGGGTAGTCTAACATTGC 58.943 45.833 0.00 0.00 39.12 3.56
116 117 9.529823 TTACTATCTATGTTACTCCCACTATGG 57.470 37.037 0.00 0.00 37.25 2.74
120 121 9.080097 GATGTTACTATCTATGTTACTCCCACT 57.920 37.037 0.00 0.00 0.00 4.00
121 122 8.857098 TGATGTTACTATCTATGTTACTCCCAC 58.143 37.037 0.00 0.00 0.00 4.61
122 123 8.857098 GTGATGTTACTATCTATGTTACTCCCA 58.143 37.037 0.00 0.00 0.00 4.37
123 124 8.857098 TGTGATGTTACTATCTATGTTACTCCC 58.143 37.037 0.00 0.00 0.00 4.30
154 155 9.678941 CATGCTACATCGTCTATTTAACTTAGA 57.321 33.333 0.00 0.00 0.00 2.10
155 156 8.428536 GCATGCTACATCGTCTATTTAACTTAG 58.571 37.037 11.37 0.00 0.00 2.18
156 157 7.923878 TGCATGCTACATCGTCTATTTAACTTA 59.076 33.333 20.33 0.00 0.00 2.24
157 158 6.761242 TGCATGCTACATCGTCTATTTAACTT 59.239 34.615 20.33 0.00 0.00 2.66
158 159 6.280643 TGCATGCTACATCGTCTATTTAACT 58.719 36.000 20.33 0.00 0.00 2.24
159 160 6.525121 TGCATGCTACATCGTCTATTTAAC 57.475 37.500 20.33 0.00 0.00 2.01
160 161 7.728847 ATTGCATGCTACATCGTCTATTTAA 57.271 32.000 20.33 0.00 0.00 1.52
161 162 8.825667 TTATTGCATGCTACATCGTCTATTTA 57.174 30.769 20.33 0.00 0.00 1.40
162 163 7.728847 TTATTGCATGCTACATCGTCTATTT 57.271 32.000 20.33 0.00 0.00 1.40
163 164 7.728847 TTTATTGCATGCTACATCGTCTATT 57.271 32.000 20.33 0.00 0.00 1.73
164 165 7.603784 TCATTTATTGCATGCTACATCGTCTAT 59.396 33.333 20.33 0.00 0.00 1.98
165 166 6.928492 TCATTTATTGCATGCTACATCGTCTA 59.072 34.615 20.33 0.00 0.00 2.59
166 167 5.759763 TCATTTATTGCATGCTACATCGTCT 59.240 36.000 20.33 0.00 0.00 4.18
167 168 5.989249 TCATTTATTGCATGCTACATCGTC 58.011 37.500 20.33 0.00 0.00 4.20
168 169 6.260714 TCTTCATTTATTGCATGCTACATCGT 59.739 34.615 20.33 0.00 0.00 3.73
169 170 6.661669 TCTTCATTTATTGCATGCTACATCG 58.338 36.000 20.33 2.28 0.00 3.84
170 171 8.861033 TTTCTTCATTTATTGCATGCTACATC 57.139 30.769 20.33 0.00 0.00 3.06
171 172 8.689061 TCTTTCTTCATTTATTGCATGCTACAT 58.311 29.630 20.33 10.71 0.00 2.29
172 173 8.054152 TCTTTCTTCATTTATTGCATGCTACA 57.946 30.769 20.33 0.00 0.00 2.74
173 174 8.400947 TCTCTTTCTTCATTTATTGCATGCTAC 58.599 33.333 20.33 0.00 0.00 3.58
174 175 8.510243 TCTCTTTCTTCATTTATTGCATGCTA 57.490 30.769 20.33 12.49 0.00 3.49
175 176 7.400599 TCTCTTTCTTCATTTATTGCATGCT 57.599 32.000 20.33 1.26 0.00 3.79
176 177 9.740239 TTATCTCTTTCTTCATTTATTGCATGC 57.260 29.630 11.82 11.82 0.00 4.06
187 188 9.793259 TGTTACCACTTTTATCTCTTTCTTCAT 57.207 29.630 0.00 0.00 0.00 2.57
188 189 9.793259 ATGTTACCACTTTTATCTCTTTCTTCA 57.207 29.630 0.00 0.00 0.00 3.02
191 192 9.384764 GCTATGTTACCACTTTTATCTCTTTCT 57.615 33.333 0.00 0.00 0.00 2.52
192 193 9.384764 AGCTATGTTACCACTTTTATCTCTTTC 57.615 33.333 0.00 0.00 0.00 2.62
195 196 9.203163 ACTAGCTATGTTACCACTTTTATCTCT 57.797 33.333 0.00 0.00 0.00 3.10
196 197 9.819267 AACTAGCTATGTTACCACTTTTATCTC 57.181 33.333 0.00 0.00 0.00 2.75
201 202 9.866798 GTAGTAACTAGCTATGTTACCACTTTT 57.133 33.333 25.92 16.80 46.31 2.27
202 203 9.252635 AGTAGTAACTAGCTATGTTACCACTTT 57.747 33.333 24.23 16.61 44.23 2.66
203 204 8.820153 AGTAGTAACTAGCTATGTTACCACTT 57.180 34.615 24.23 16.82 44.23 3.16
204 205 9.911788 TTAGTAGTAACTAGCTATGTTACCACT 57.088 33.333 27.98 27.98 46.34 4.00
230 231 9.716531 CCTTGATATGTGTGATGTTACTCATAT 57.283 33.333 11.16 11.16 44.22 1.78
231 232 8.923270 TCCTTGATATGTGTGATGTTACTCATA 58.077 33.333 0.00 0.00 39.73 2.15
232 233 7.795047 TCCTTGATATGTGTGATGTTACTCAT 58.205 34.615 0.00 0.00 38.11 2.90
233 234 7.181569 TCCTTGATATGTGTGATGTTACTCA 57.818 36.000 0.00 0.00 0.00 3.41
234 235 8.492673 TTTCCTTGATATGTGTGATGTTACTC 57.507 34.615 0.00 0.00 0.00 2.59
235 236 8.321353 TCTTTCCTTGATATGTGTGATGTTACT 58.679 33.333 0.00 0.00 0.00 2.24
236 237 8.492673 TCTTTCCTTGATATGTGTGATGTTAC 57.507 34.615 0.00 0.00 0.00 2.50
237 238 9.112725 CATCTTTCCTTGATATGTGTGATGTTA 57.887 33.333 0.00 0.00 0.00 2.41
238 239 7.613022 ACATCTTTCCTTGATATGTGTGATGTT 59.387 33.333 0.00 0.00 37.94 2.71
239 240 7.066645 CACATCTTTCCTTGATATGTGTGATGT 59.933 37.037 0.00 0.00 41.46 3.06
240 241 7.415229 CACATCTTTCCTTGATATGTGTGATG 58.585 38.462 0.00 0.00 41.46 3.07
241 242 7.563888 CACATCTTTCCTTGATATGTGTGAT 57.436 36.000 0.00 0.00 41.46 3.06
242 243 6.990341 CACATCTTTCCTTGATATGTGTGA 57.010 37.500 0.00 0.00 41.46 3.58
247 248 9.149225 GCTATAGACACATCTTTCCTTGATATG 57.851 37.037 3.21 0.00 36.29 1.78
248 249 8.317679 GGCTATAGACACATCTTTCCTTGATAT 58.682 37.037 3.21 0.00 36.29 1.63
249 250 7.510685 AGGCTATAGACACATCTTTCCTTGATA 59.489 37.037 8.68 0.00 36.29 2.15
250 251 6.328672 AGGCTATAGACACATCTTTCCTTGAT 59.671 38.462 8.68 0.00 36.29 2.57
251 252 5.663106 AGGCTATAGACACATCTTTCCTTGA 59.337 40.000 8.68 0.00 36.29 3.02
252 253 5.923204 AGGCTATAGACACATCTTTCCTTG 58.077 41.667 8.68 0.00 36.29 3.61
253 254 7.676683 TTAGGCTATAGACACATCTTTCCTT 57.323 36.000 8.68 0.00 36.29 3.36
254 255 7.863901 ATTAGGCTATAGACACATCTTTCCT 57.136 36.000 8.68 1.12 36.29 3.36
255 256 9.998106 TTTATTAGGCTATAGACACATCTTTCC 57.002 33.333 8.68 0.00 36.29 3.13
262 263 9.764363 CACTTCATTTATTAGGCTATAGACACA 57.236 33.333 8.68 0.00 0.00 3.72
263 264 9.765795 ACACTTCATTTATTAGGCTATAGACAC 57.234 33.333 8.68 0.00 0.00 3.67
266 267 9.998106 GGAACACTTCATTTATTAGGCTATAGA 57.002 33.333 3.21 0.00 0.00 1.98
267 268 9.778741 TGGAACACTTCATTTATTAGGCTATAG 57.221 33.333 0.00 0.00 0.00 1.31
295 296 5.121105 GGGGAGTAACATATGTGTGGTAAC 58.879 45.833 9.63 1.91 38.92 2.50
296 297 4.783763 TGGGGAGTAACATATGTGTGGTAA 59.216 41.667 9.63 0.00 38.92 2.85
297 298 4.162698 GTGGGGAGTAACATATGTGTGGTA 59.837 45.833 9.63 0.00 38.92 3.25
298 299 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
299 300 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
300 301 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
301 302 7.924358 TTATAGTGGGGAGTAACATATGTGT 57.076 36.000 9.63 2.63 41.28 3.72
302 303 7.878127 CCTTTATAGTGGGGAGTAACATATGTG 59.122 40.741 9.63 0.00 0.00 3.21
303 304 7.571357 ACCTTTATAGTGGGGAGTAACATATGT 59.429 37.037 1.41 1.41 0.00 2.29
304 305 7.974504 ACCTTTATAGTGGGGAGTAACATATG 58.025 38.462 0.00 0.00 0.00 1.78
305 306 9.097946 GTACCTTTATAGTGGGGAGTAACATAT 57.902 37.037 0.00 0.00 0.00 1.78
306 307 8.066867 TGTACCTTTATAGTGGGGAGTAACATA 58.933 37.037 0.00 0.00 0.00 2.29
307 308 6.904654 TGTACCTTTATAGTGGGGAGTAACAT 59.095 38.462 0.00 0.00 0.00 2.71
308 309 6.262980 TGTACCTTTATAGTGGGGAGTAACA 58.737 40.000 0.00 0.00 0.00 2.41
309 310 6.796785 TGTACCTTTATAGTGGGGAGTAAC 57.203 41.667 0.00 0.00 0.00 2.50
310 311 8.513658 TCTATGTACCTTTATAGTGGGGAGTAA 58.486 37.037 0.00 0.00 0.00 2.24
311 312 7.946776 GTCTATGTACCTTTATAGTGGGGAGTA 59.053 40.741 0.00 0.00 0.00 2.59
312 313 6.781507 GTCTATGTACCTTTATAGTGGGGAGT 59.218 42.308 0.00 0.00 0.00 3.85
313 314 7.011382 AGTCTATGTACCTTTATAGTGGGGAG 58.989 42.308 0.00 0.00 0.00 4.30
314 315 6.930475 AGTCTATGTACCTTTATAGTGGGGA 58.070 40.000 0.00 0.00 0.00 4.81
315 316 7.949006 ACTAGTCTATGTACCTTTATAGTGGGG 59.051 40.741 0.00 0.00 0.00 4.96
316 317 8.937207 ACTAGTCTATGTACCTTTATAGTGGG 57.063 38.462 0.00 0.00 0.00 4.61
323 324 9.925545 TCCATGTTACTAGTCTATGTACCTTTA 57.074 33.333 0.00 0.00 0.00 1.85
324 325 8.693625 GTCCATGTTACTAGTCTATGTACCTTT 58.306 37.037 0.00 0.00 0.00 3.11
325 326 7.837689 TGTCCATGTTACTAGTCTATGTACCTT 59.162 37.037 0.00 0.00 0.00 3.50
326 327 7.351952 TGTCCATGTTACTAGTCTATGTACCT 58.648 38.462 0.00 0.00 0.00 3.08
327 328 7.578310 TGTCCATGTTACTAGTCTATGTACC 57.422 40.000 0.00 0.00 0.00 3.34
344 345 9.464714 GTAACATAGACTAGTAACATGTCCATG 57.535 37.037 13.80 5.74 44.15 3.66
345 346 9.422681 AGTAACATAGACTAGTAACATGTCCAT 57.577 33.333 13.80 5.12 0.00 3.41
346 347 8.818622 AGTAACATAGACTAGTAACATGTCCA 57.181 34.615 13.80 5.90 0.00 4.02
349 350 9.129532 GGGTAGTAACATAGACTAGTAACATGT 57.870 37.037 0.00 3.02 30.08 3.21
350 351 9.128404 TGGGTAGTAACATAGACTAGTAACATG 57.872 37.037 0.00 2.36 30.08 3.21
351 352 9.878737 ATGGGTAGTAACATAGACTAGTAACAT 57.121 33.333 0.00 0.00 30.08 2.71
352 353 9.705103 AATGGGTAGTAACATAGACTAGTAACA 57.295 33.333 0.00 0.00 30.08 2.41
353 354 9.962783 CAATGGGTAGTAACATAGACTAGTAAC 57.037 37.037 0.00 0.00 30.08 2.50
354 355 9.705103 ACAATGGGTAGTAACATAGACTAGTAA 57.295 33.333 0.00 0.00 30.08 2.24
355 356 9.128404 CACAATGGGTAGTAACATAGACTAGTA 57.872 37.037 0.00 0.00 30.08 1.82
356 357 7.069578 CCACAATGGGTAGTAACATAGACTAGT 59.930 40.741 0.00 0.00 32.67 2.57
357 358 7.434492 CCACAATGGGTAGTAACATAGACTAG 58.566 42.308 0.00 0.00 32.67 2.57
358 359 6.183360 GCCACAATGGGTAGTAACATAGACTA 60.183 42.308 0.00 0.00 38.19 2.59
359 360 5.396436 GCCACAATGGGTAGTAACATAGACT 60.396 44.000 0.00 0.00 38.19 3.24
360 361 4.814771 GCCACAATGGGTAGTAACATAGAC 59.185 45.833 0.00 0.00 38.19 2.59
361 362 5.031066 GCCACAATGGGTAGTAACATAGA 57.969 43.478 0.00 0.00 38.19 1.98
373 374 2.565841 GCTAAGACTAGCCACAATGGG 58.434 52.381 0.00 0.00 44.22 4.00
380 381 8.457348 CAGAACTCTGTTGCTAAGACTAGCCA 62.457 46.154 1.88 0.00 42.87 4.75
381 382 6.133210 CAGAACTCTGTTGCTAAGACTAGCC 61.133 48.000 1.88 0.00 42.87 3.93
382 383 4.862018 CAGAACTCTGTTGCTAAGACTAGC 59.138 45.833 0.00 0.00 43.29 3.42
397 398 5.696724 CCATTTACTTTCGTGACAGAACTCT 59.303 40.000 0.00 0.00 0.00 3.24
398 399 5.694910 TCCATTTACTTTCGTGACAGAACTC 59.305 40.000 0.00 0.00 0.00 3.01
399 400 5.607477 TCCATTTACTTTCGTGACAGAACT 58.393 37.500 0.00 0.00 0.00 3.01
400 401 5.917541 TCCATTTACTTTCGTGACAGAAC 57.082 39.130 0.00 0.00 0.00 3.01
401 402 6.227522 TGATCCATTTACTTTCGTGACAGAA 58.772 36.000 0.00 0.00 0.00 3.02
402 403 5.789521 TGATCCATTTACTTTCGTGACAGA 58.210 37.500 0.00 0.00 0.00 3.41
403 404 5.869344 TCTGATCCATTTACTTTCGTGACAG 59.131 40.000 0.00 0.00 0.00 3.51
404 405 5.789521 TCTGATCCATTTACTTTCGTGACA 58.210 37.500 0.00 0.00 0.00 3.58
405 406 5.220491 GCTCTGATCCATTTACTTTCGTGAC 60.220 44.000 0.00 0.00 0.00 3.67
406 407 4.870426 GCTCTGATCCATTTACTTTCGTGA 59.130 41.667 0.00 0.00 0.00 4.35
407 408 4.631377 TGCTCTGATCCATTTACTTTCGTG 59.369 41.667 0.00 0.00 0.00 4.35
408 409 4.832248 TGCTCTGATCCATTTACTTTCGT 58.168 39.130 0.00 0.00 0.00 3.85
409 410 5.998454 ATGCTCTGATCCATTTACTTTCG 57.002 39.130 0.00 0.00 0.00 3.46
410 411 7.220030 TCCTATGCTCTGATCCATTTACTTTC 58.780 38.462 0.00 0.00 0.00 2.62
411 412 7.141758 TCCTATGCTCTGATCCATTTACTTT 57.858 36.000 0.00 0.00 0.00 2.66
412 413 6.753913 TCCTATGCTCTGATCCATTTACTT 57.246 37.500 0.00 0.00 0.00 2.24
413 414 6.753913 TTCCTATGCTCTGATCCATTTACT 57.246 37.500 0.00 0.00 0.00 2.24
414 415 7.807977 TTTTCCTATGCTCTGATCCATTTAC 57.192 36.000 0.00 0.00 0.00 2.01
415 416 8.219868 TGATTTTCCTATGCTCTGATCCATTTA 58.780 33.333 0.00 0.00 0.00 1.40
416 417 7.064866 TGATTTTCCTATGCTCTGATCCATTT 58.935 34.615 0.00 0.00 0.00 2.32
417 418 6.607970 TGATTTTCCTATGCTCTGATCCATT 58.392 36.000 0.00 0.00 0.00 3.16
418 419 6.044054 TCTGATTTTCCTATGCTCTGATCCAT 59.956 38.462 0.00 0.00 0.00 3.41
419 420 5.367644 TCTGATTTTCCTATGCTCTGATCCA 59.632 40.000 0.00 0.00 0.00 3.41
420 421 5.862845 TCTGATTTTCCTATGCTCTGATCC 58.137 41.667 0.00 0.00 0.00 3.36
421 422 7.982761 ATTCTGATTTTCCTATGCTCTGATC 57.017 36.000 0.00 0.00 0.00 2.92
422 423 8.878211 TCTATTCTGATTTTCCTATGCTCTGAT 58.122 33.333 0.00 0.00 0.00 2.90
423 424 8.255111 TCTATTCTGATTTTCCTATGCTCTGA 57.745 34.615 0.00 0.00 0.00 3.27
424 425 8.937884 CATCTATTCTGATTTTCCTATGCTCTG 58.062 37.037 0.00 0.00 0.00 3.35
425 426 8.878211 TCATCTATTCTGATTTTCCTATGCTCT 58.122 33.333 0.00 0.00 0.00 4.09
426 427 9.669887 ATCATCTATTCTGATTTTCCTATGCTC 57.330 33.333 0.00 0.00 28.98 4.26
453 454 8.917088 CCCCACATGATTTTTACTCAATTCTAT 58.083 33.333 0.00 0.00 0.00 1.98
454 455 7.893302 ACCCCACATGATTTTTACTCAATTCTA 59.107 33.333 0.00 0.00 0.00 2.10
455 456 6.725834 ACCCCACATGATTTTTACTCAATTCT 59.274 34.615 0.00 0.00 0.00 2.40
456 457 6.935167 ACCCCACATGATTTTTACTCAATTC 58.065 36.000 0.00 0.00 0.00 2.17
457 458 6.725834 AGACCCCACATGATTTTTACTCAATT 59.274 34.615 0.00 0.00 0.00 2.32
458 459 6.256053 AGACCCCACATGATTTTTACTCAAT 58.744 36.000 0.00 0.00 0.00 2.57
459 460 5.640147 AGACCCCACATGATTTTTACTCAA 58.360 37.500 0.00 0.00 0.00 3.02
460 461 5.255397 AGACCCCACATGATTTTTACTCA 57.745 39.130 0.00 0.00 0.00 3.41
461 462 6.415573 AGTAGACCCCACATGATTTTTACTC 58.584 40.000 0.00 0.00 0.00 2.59
462 463 6.388619 AGTAGACCCCACATGATTTTTACT 57.611 37.500 0.00 0.00 0.00 2.24
463 464 8.570068 TTAAGTAGACCCCACATGATTTTTAC 57.430 34.615 0.00 0.00 0.00 2.01
464 465 9.184523 CATTAAGTAGACCCCACATGATTTTTA 57.815 33.333 0.00 0.00 0.00 1.52
465 466 7.893302 TCATTAAGTAGACCCCACATGATTTTT 59.107 33.333 0.00 0.00 0.00 1.94
466 467 7.410174 TCATTAAGTAGACCCCACATGATTTT 58.590 34.615 0.00 0.00 0.00 1.82
467 468 6.969043 TCATTAAGTAGACCCCACATGATTT 58.031 36.000 0.00 0.00 0.00 2.17
468 469 6.575244 TCATTAAGTAGACCCCACATGATT 57.425 37.500 0.00 0.00 0.00 2.57
469 470 6.101734 ACATCATTAAGTAGACCCCACATGAT 59.898 38.462 0.00 0.00 31.67 2.45
470 471 5.428457 ACATCATTAAGTAGACCCCACATGA 59.572 40.000 0.00 0.00 0.00 3.07
471 472 5.528690 CACATCATTAAGTAGACCCCACATG 59.471 44.000 0.00 0.00 0.00 3.21
472 473 5.428457 TCACATCATTAAGTAGACCCCACAT 59.572 40.000 0.00 0.00 0.00 3.21
473 474 4.780554 TCACATCATTAAGTAGACCCCACA 59.219 41.667 0.00 0.00 0.00 4.17
474 475 5.353394 TCACATCATTAAGTAGACCCCAC 57.647 43.478 0.00 0.00 0.00 4.61
475 476 6.575244 ATTCACATCATTAAGTAGACCCCA 57.425 37.500 0.00 0.00 0.00 4.96
476 477 7.162082 CCTATTCACATCATTAAGTAGACCCC 58.838 42.308 0.00 0.00 0.00 4.95
477 478 6.651225 GCCTATTCACATCATTAAGTAGACCC 59.349 42.308 0.00 0.00 0.00 4.46
478 479 7.386299 CAGCCTATTCACATCATTAAGTAGACC 59.614 40.741 0.00 0.00 0.00 3.85
479 480 7.386299 CCAGCCTATTCACATCATTAAGTAGAC 59.614 40.741 0.00 0.00 0.00 2.59
480 481 7.290014 TCCAGCCTATTCACATCATTAAGTAGA 59.710 37.037 0.00 0.00 0.00 2.59
481 482 7.445121 TCCAGCCTATTCACATCATTAAGTAG 58.555 38.462 0.00 0.00 0.00 2.57
482 483 7.373617 TCCAGCCTATTCACATCATTAAGTA 57.626 36.000 0.00 0.00 0.00 2.24
483 484 6.252599 TCCAGCCTATTCACATCATTAAGT 57.747 37.500 0.00 0.00 0.00 2.24
484 485 9.107177 GATATCCAGCCTATTCACATCATTAAG 57.893 37.037 0.00 0.00 0.00 1.85
485 486 8.605065 TGATATCCAGCCTATTCACATCATTAA 58.395 33.333 0.00 0.00 0.00 1.40
486 487 8.149631 TGATATCCAGCCTATTCACATCATTA 57.850 34.615 0.00 0.00 0.00 1.90
487 488 7.024345 TGATATCCAGCCTATTCACATCATT 57.976 36.000 0.00 0.00 0.00 2.57
488 489 6.631763 TGATATCCAGCCTATTCACATCAT 57.368 37.500 0.00 0.00 0.00 2.45
489 490 6.270695 TCTTGATATCCAGCCTATTCACATCA 59.729 38.462 0.00 0.00 0.00 3.07
490 491 6.705302 TCTTGATATCCAGCCTATTCACATC 58.295 40.000 0.00 0.00 0.00 3.06
491 492 6.499699 TCTCTTGATATCCAGCCTATTCACAT 59.500 38.462 0.00 0.00 0.00 3.21
492 493 5.840693 TCTCTTGATATCCAGCCTATTCACA 59.159 40.000 0.00 0.00 0.00 3.58
493 494 6.352016 TCTCTTGATATCCAGCCTATTCAC 57.648 41.667 0.00 0.00 0.00 3.18
494 495 7.379059 TTTCTCTTGATATCCAGCCTATTCA 57.621 36.000 0.00 0.00 0.00 2.57
495 496 9.950496 TTATTTCTCTTGATATCCAGCCTATTC 57.050 33.333 0.00 0.00 0.00 1.75
496 497 9.956640 CTTATTTCTCTTGATATCCAGCCTATT 57.043 33.333 0.00 0.00 0.00 1.73
497 498 9.331466 TCTTATTTCTCTTGATATCCAGCCTAT 57.669 33.333 0.00 0.00 0.00 2.57
498 499 8.727100 TCTTATTTCTCTTGATATCCAGCCTA 57.273 34.615 0.00 0.00 0.00 3.93
499 500 7.623999 TCTTATTTCTCTTGATATCCAGCCT 57.376 36.000 0.00 0.00 0.00 4.58
500 501 9.598517 CTATCTTATTTCTCTTGATATCCAGCC 57.401 37.037 0.00 0.00 0.00 4.85
509 510 9.426534 TCATCCTCACTATCTTATTTCTCTTGA 57.573 33.333 0.00 0.00 0.00 3.02
539 540 9.998106 AGCACGAAACATCTATAATACCTAAAT 57.002 29.630 0.00 0.00 0.00 1.40
540 541 9.826574 AAGCACGAAACATCTATAATACCTAAA 57.173 29.630 0.00 0.00 0.00 1.85
541 542 9.472361 GAAGCACGAAACATCTATAATACCTAA 57.528 33.333 0.00 0.00 0.00 2.69
542 543 7.806487 CGAAGCACGAAACATCTATAATACCTA 59.194 37.037 0.00 0.00 45.77 3.08
543 544 6.641314 CGAAGCACGAAACATCTATAATACCT 59.359 38.462 0.00 0.00 45.77 3.08
544 545 6.420008 ACGAAGCACGAAACATCTATAATACC 59.580 38.462 10.05 0.00 45.77 2.73
545 546 7.274367 CACGAAGCACGAAACATCTATAATAC 58.726 38.462 10.05 0.00 45.77 1.89
546 547 6.074516 GCACGAAGCACGAAACATCTATAATA 60.075 38.462 10.05 0.00 45.77 0.98
547 548 5.276868 GCACGAAGCACGAAACATCTATAAT 60.277 40.000 10.05 0.00 45.77 1.28
548 549 4.032445 GCACGAAGCACGAAACATCTATAA 59.968 41.667 10.05 0.00 45.77 0.98
549 550 3.550275 GCACGAAGCACGAAACATCTATA 59.450 43.478 10.05 0.00 45.77 1.31
550 551 2.348666 GCACGAAGCACGAAACATCTAT 59.651 45.455 10.05 0.00 45.77 1.98
551 552 1.724623 GCACGAAGCACGAAACATCTA 59.275 47.619 10.05 0.00 45.77 1.98
552 553 0.512952 GCACGAAGCACGAAACATCT 59.487 50.000 10.05 0.00 45.77 2.90
553 554 2.987535 GCACGAAGCACGAAACATC 58.012 52.632 10.05 0.00 45.77 3.06
570 571 3.885297 TGGGAATAGCAAAAGCATAGAGC 59.115 43.478 0.00 0.00 46.19 4.09
571 572 5.128919 ACTGGGAATAGCAAAAGCATAGAG 58.871 41.667 0.00 0.00 0.00 2.43
572 573 5.116084 ACTGGGAATAGCAAAAGCATAGA 57.884 39.130 0.00 0.00 0.00 1.98
573 574 4.883585 TGACTGGGAATAGCAAAAGCATAG 59.116 41.667 0.00 0.00 0.00 2.23
574 575 4.854173 TGACTGGGAATAGCAAAAGCATA 58.146 39.130 0.00 0.00 0.00 3.14
575 576 3.700538 TGACTGGGAATAGCAAAAGCAT 58.299 40.909 0.00 0.00 0.00 3.79
576 577 3.153369 TGACTGGGAATAGCAAAAGCA 57.847 42.857 0.00 0.00 0.00 3.91
577 578 3.507622 ACTTGACTGGGAATAGCAAAAGC 59.492 43.478 0.00 0.00 0.00 3.51
627 628 7.671495 AATTCATATTCTTGGCCACAAAAAC 57.329 32.000 3.88 0.00 35.89 2.43
728 734 3.004944 GTGTCACGTCCTCTCTCTTCTTT 59.995 47.826 0.00 0.00 0.00 2.52
771 782 2.180159 AACGGGGCGTCTTGCTACAT 62.180 55.000 0.00 0.00 45.43 2.29
858 2922 1.206132 TCACCCCATATGTCACGTGAC 59.794 52.381 36.01 36.01 44.97 3.67
1479 3566 3.972950 AGAGATCAATACAGTCGACGG 57.027 47.619 14.42 14.42 0.00 4.79
1558 3645 8.336080 GTGTAGCTAACAAAATAGATAAGTGGC 58.664 37.037 0.00 0.00 40.63 5.01
1584 3671 0.804989 GTCCAGCATCACCTTTTCGG 59.195 55.000 0.00 0.00 39.35 4.30
1617 3704 5.188359 ACGGAGGGAGTAATTGTTTAGCTAA 59.812 40.000 0.86 0.86 0.00 3.09
1669 3756 7.956420 TTGCTCCGTATGTAGTTTATATTGG 57.044 36.000 0.00 0.00 0.00 3.16
1676 3763 5.475564 ACCAATTTTGCTCCGTATGTAGTTT 59.524 36.000 0.00 0.00 0.00 2.66
1683 3770 4.949856 AGATTCACCAATTTTGCTCCGTAT 59.050 37.500 0.00 0.00 0.00 3.06
1805 3893 3.945921 GGGTTTATCCTTCTTTTCGGGAG 59.054 47.826 0.00 0.00 36.25 4.30
1825 3913 4.410400 GACTTGTGAGGCCGGGGG 62.410 72.222 2.18 0.00 0.00 5.40
1865 3953 7.498900 TCATGTGAGTTGTTTCTGAATTAGTGT 59.501 33.333 0.00 0.00 0.00 3.55
1902 3990 6.019156 GCTGATCTTAAAAATGAGAGGAGACG 60.019 42.308 0.00 0.00 0.00 4.18
1944 4032 7.834681 GGGGAAAGTTTAATCCTATCTTTCAGT 59.165 37.037 14.72 0.00 42.94 3.41
2243 4470 1.192534 GTGCAAGTTCACGACTGCTAC 59.807 52.381 0.00 0.00 39.00 3.58
2272 5990 3.488489 GTCCACGTTCAAATGTACATGC 58.512 45.455 9.63 0.00 0.00 4.06
2335 6053 2.717639 ATTCCGCCAATCTAGCAAGT 57.282 45.000 0.00 0.00 0.00 3.16
2551 7329 7.231519 CACATCTCTAGACCATAATGACCACTA 59.768 40.741 0.00 0.00 0.00 2.74
2955 9081 6.648725 CCCTTTTGTGACAAGAAACTGAAAAA 59.351 34.615 0.00 0.00 0.00 1.94
3144 9270 0.549950 CCTGATGATGAACCCAGGCT 59.450 55.000 0.00 0.00 39.59 4.58
3327 9454 3.379452 AGGGGTCTCAGAATACTTCCAG 58.621 50.000 0.00 0.00 0.00 3.86
3476 9603 4.193090 ACATACCGGAATTCGCAACAATA 58.807 39.130 9.46 0.00 37.59 1.90
3489 9616 5.120399 CCACAGCTTATTTTACATACCGGA 58.880 41.667 9.46 0.00 0.00 5.14
3604 9731 8.928733 ACATGATTATTCTTTTTGTCAACATGC 58.071 29.630 0.00 0.00 35.27 4.06
3677 9804 6.440328 ACACAATAAAATTCCCCTACAAGCAT 59.560 34.615 0.00 0.00 0.00 3.79
3842 9969 3.181493 CGAAAAAGCTCATCCTCCATTGG 60.181 47.826 0.00 0.00 0.00 3.16
3883 10010 5.098663 ACCTAATCCTTCCACCTTGAGTTA 58.901 41.667 0.00 0.00 0.00 2.24
3966 10093 1.818959 CGAAACTCCGGGGTACACCA 61.819 60.000 16.12 0.00 42.91 4.17
4022 10149 0.105760 ATCTCCGAGGTCTCATGGCT 60.106 55.000 0.00 0.00 0.00 4.75
4034 10161 1.973515 CTTGATGGGATGGATCTCCGA 59.026 52.381 0.00 0.00 39.43 4.55
4069 10196 4.689062 AGACCCTGGATATCCGTGATATT 58.311 43.478 17.04 0.00 35.64 1.28
4140 10267 1.382695 TGGAGACCCCGGGATCTTC 60.383 63.158 21.73 19.67 37.93 2.87
4246 10418 1.068472 CCGGGTCTAAGAATCGGATCG 60.068 57.143 0.00 0.00 42.94 3.69
4247 10419 2.229302 CTCCGGGTCTAAGAATCGGATC 59.771 54.545 0.00 0.00 46.81 3.36
4248 10420 2.158505 TCTCCGGGTCTAAGAATCGGAT 60.159 50.000 0.00 0.00 46.81 4.18
4249 10421 1.213678 TCTCCGGGTCTAAGAATCGGA 59.786 52.381 0.00 10.85 46.06 4.55
4250 10422 1.688772 TCTCCGGGTCTAAGAATCGG 58.311 55.000 0.00 0.00 41.80 4.18
4251 10423 2.229302 GGATCTCCGGGTCTAAGAATCG 59.771 54.545 0.00 0.00 0.00 3.34
4252 10424 3.231818 TGGATCTCCGGGTCTAAGAATC 58.768 50.000 0.00 0.00 39.43 2.52
4253 10425 3.235200 CTGGATCTCCGGGTCTAAGAAT 58.765 50.000 0.00 0.00 38.76 2.40
4254 10426 2.667470 CTGGATCTCCGGGTCTAAGAA 58.333 52.381 0.00 0.00 38.76 2.52
4255 10427 2.366640 CTGGATCTCCGGGTCTAAGA 57.633 55.000 0.00 0.00 38.76 2.10
4263 10435 2.946988 TAGTGCCCCTGGATCTCCGG 62.947 65.000 0.00 0.00 42.13 5.14
4264 10436 1.457643 TAGTGCCCCTGGATCTCCG 60.458 63.158 0.00 0.00 39.43 4.63
4265 10437 0.105453 TCTAGTGCCCCTGGATCTCC 60.105 60.000 0.00 0.00 0.00 3.71
4266 10438 1.691434 CTTCTAGTGCCCCTGGATCTC 59.309 57.143 0.00 0.00 29.85 2.75
4295 10467 2.189594 TGCCACTCAGTTCCATCAAG 57.810 50.000 0.00 0.00 0.00 3.02
4345 10517 8.367911 AGTTCACTTCAATTCATACACTCACTA 58.632 33.333 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.