Multiple sequence alignment - TraesCS2D01G273000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G273000 chr2D 100.000 6019 0 0 1 6019 338672105 338666087 0.000000e+00 11116.0
1 TraesCS2D01G273000 chr2D 92.788 929 65 2 1 928 548611985 548611058 0.000000e+00 1343.0
2 TraesCS2D01G273000 chr2D 100.000 131 0 0 3690 3820 632057988 632057858 6.030000e-60 243.0
3 TraesCS2D01G273000 chr2D 100.000 127 0 0 3691 3817 52026634 52026508 1.010000e-57 235.0
4 TraesCS2D01G273000 chr2A 95.272 2517 72 18 943 3427 448509273 448506772 0.000000e+00 3945.0
5 TraesCS2D01G273000 chr2A 95.110 2229 65 20 3815 6019 448501389 448499181 0.000000e+00 3472.0
6 TraesCS2D01G273000 chr2A 89.807 932 84 9 1 926 55939993 55940919 0.000000e+00 1184.0
7 TraesCS2D01G273000 chr2A 95.926 270 8 2 3426 3693 448501654 448501386 9.260000e-118 435.0
8 TraesCS2D01G273000 chr3B 94.453 1262 48 8 925 2182 225166844 225168087 0.000000e+00 1923.0
9 TraesCS2D01G273000 chr3B 91.408 838 32 12 2791 3623 225168785 225169587 0.000000e+00 1112.0
10 TraesCS2D01G273000 chr3B 95.110 634 28 3 2166 2797 225168118 225168750 0.000000e+00 996.0
11 TraesCS2D01G273000 chr3B 93.419 547 30 6 3950 4490 225171236 225171782 0.000000e+00 806.0
12 TraesCS2D01G273000 chr3B 88.657 335 14 5 4871 5183 225172053 225172385 2.630000e-103 387.0
13 TraesCS2D01G273000 chr3B 91.542 201 14 3 5822 6019 225172569 225172769 2.140000e-69 274.0
14 TraesCS2D01G273000 chr3B 83.883 273 25 8 4549 4811 225171777 225172040 6.030000e-60 243.0
15 TraesCS2D01G273000 chr3D 95.110 1002 31 6 925 1926 153494092 153495075 0.000000e+00 1563.0
16 TraesCS2D01G273000 chr3D 94.344 884 41 5 1 883 7696564 7697439 0.000000e+00 1347.0
17 TraesCS2D01G273000 chr3D 91.071 840 32 13 2791 3623 153502391 153503194 0.000000e+00 1096.0
18 TraesCS2D01G273000 chr3D 95.268 634 27 3 2166 2797 153501724 153502356 0.000000e+00 1002.0
19 TraesCS2D01G273000 chr3D 94.175 515 25 5 3950 4460 153504912 153505425 0.000000e+00 780.0
20 TraesCS2D01G273000 chr3D 90.838 382 30 5 5643 6019 153506229 153506610 1.940000e-139 507.0
21 TraesCS2D01G273000 chr3D 90.274 329 12 4 4871 5183 153505694 153506018 4.340000e-111 412.0
22 TraesCS2D01G273000 chr3D 91.985 262 15 2 1921 2182 153501442 153501697 4.430000e-96 363.0
23 TraesCS2D01G273000 chr3D 85.985 264 24 6 4552 4811 153505427 153505681 2.760000e-68 270.0
24 TraesCS2D01G273000 chr3D 93.548 155 5 5 3665 3817 283321100 283321251 6.070000e-55 226.0
25 TraesCS2D01G273000 chr3D 93.793 145 6 3 3678 3821 443434228 443434370 1.310000e-51 215.0
26 TraesCS2D01G273000 chr3D 80.892 157 20 8 5431 5577 110398285 110398129 1.370000e-21 115.0
27 TraesCS2D01G273000 chr4D 93.763 930 54 4 1 928 308810979 308811906 0.000000e+00 1393.0
28 TraesCS2D01G273000 chr4D 96.947 131 4 0 3690 3820 259845383 259845253 2.820000e-53 220.0
29 TraesCS2D01G273000 chr4D 94.326 141 7 1 3691 3831 15801149 15801010 1.310000e-51 215.0
30 TraesCS2D01G273000 chr4D 94.891 137 7 0 3684 3820 258894022 258894158 1.310000e-51 215.0
31 TraesCS2D01G273000 chr4D 93.662 142 7 1 3678 3819 353045355 353045494 1.700000e-50 211.0
32 TraesCS2D01G273000 chr4D 81.169 154 19 8 5430 5575 468361373 468361524 1.370000e-21 115.0
33 TraesCS2D01G273000 chr4D 88.889 63 7 0 5447 5509 484280514 484280452 1.800000e-10 78.7
34 TraesCS2D01G273000 chr6D 92.553 940 52 6 1 926 345787570 345788505 0.000000e+00 1332.0
35 TraesCS2D01G273000 chr6D 92.077 934 66 5 1 933 42386095 42385169 0.000000e+00 1308.0
36 TraesCS2D01G273000 chr6D 96.970 132 4 0 3691 3822 54003300 54003169 7.850000e-54 222.0
37 TraesCS2D01G273000 chr6D 96.875 128 4 0 3690 3817 196359381 196359254 1.310000e-51 215.0
38 TraesCS2D01G273000 chr6D 94.853 136 7 0 3691 3826 205074720 205074585 4.730000e-51 213.0
39 TraesCS2D01G273000 chr6D 87.069 116 12 3 5427 5540 418157501 418157615 1.760000e-25 128.0
40 TraesCS2D01G273000 chr5D 92.283 933 66 5 1 928 486839221 486840152 0.000000e+00 1319.0
41 TraesCS2D01G273000 chr5D 92.382 932 62 5 1 926 549500964 549501892 0.000000e+00 1319.0
42 TraesCS2D01G273000 chr5D 91.810 928 72 4 1 926 48381237 48382162 0.000000e+00 1290.0
43 TraesCS2D01G273000 chr5D 91.946 149 10 2 3690 3836 296940951 296941099 2.200000e-49 207.0
44 TraesCS2D01G273000 chr5D 82.576 132 13 7 5453 5578 506087808 506087681 2.290000e-19 108.0
45 TraesCS2D01G273000 chr5D 77.564 156 26 8 5431 5578 363123399 363123553 1.070000e-12 86.1
46 TraesCS2D01G273000 chr5D 80.374 107 16 5 5431 5534 11566624 11566728 6.470000e-10 76.8
47 TraesCS2D01G273000 chr2B 90.758 844 39 17 2791 3623 405274147 405273332 0.000000e+00 1090.0
48 TraesCS2D01G273000 chr2B 93.919 592 32 3 2208 2797 405274771 405274182 0.000000e+00 891.0
49 TraesCS2D01G273000 chr2B 91.652 551 31 7 3946 4490 405272934 405272393 0.000000e+00 749.0
50 TraesCS2D01G273000 chr2B 95.044 343 14 3 1088 1430 405275156 405274817 2.470000e-148 536.0
51 TraesCS2D01G273000 chr2B 92.147 382 25 5 5643 6019 405271280 405270899 8.880000e-148 534.0
52 TraesCS2D01G273000 chr2B 93.220 236 15 1 1937 2171 405275523 405275288 4.470000e-91 346.0
53 TraesCS2D01G273000 chr2B 87.778 270 19 5 4549 4811 405272398 405272136 2.730000e-78 303.0
54 TraesCS2D01G273000 chr2B 91.509 212 11 2 5057 5263 405271658 405271449 9.870000e-73 285.0
55 TraesCS2D01G273000 chr2B 96.053 152 6 0 1085 1236 405275672 405275521 1.300000e-61 248.0
56 TraesCS2D01G273000 chr2B 89.691 194 7 4 4871 5053 405272123 405271932 1.010000e-57 235.0
57 TraesCS2D01G273000 chr2B 92.857 56 4 0 1037 1092 405279189 405279134 1.390000e-11 82.4
58 TraesCS2D01G273000 chr3A 90.476 840 37 13 2791 3623 176158385 176157582 0.000000e+00 1068.0
59 TraesCS2D01G273000 chr3A 94.637 634 31 3 2166 2797 176159052 176158420 0.000000e+00 979.0
60 TraesCS2D01G273000 chr3A 94.330 582 18 9 1184 1765 176160086 176159520 0.000000e+00 878.0
61 TraesCS2D01G273000 chr3A 92.575 431 25 3 1752 2182 176159504 176159081 3.990000e-171 612.0
62 TraesCS2D01G273000 chr3A 89.231 390 29 10 5643 6019 176149025 176148636 5.460000e-130 475.0
63 TraesCS2D01G273000 chr3A 91.354 347 26 4 3952 4294 176155952 176155606 7.060000e-129 472.0
64 TraesCS2D01G273000 chr3A 89.666 329 15 4 4871 5183 176149652 176149327 9.400000e-108 401.0
65 TraesCS2D01G273000 chr3A 96.020 201 8 0 4290 4490 176150111 176149911 1.620000e-85 327.0
66 TraesCS2D01G273000 chr3A 92.973 185 13 0 1013 1197 176164110 176163926 2.760000e-68 270.0
67 TraesCS2D01G273000 chr3A 84.387 269 19 7 4549 4811 176149916 176149665 6.030000e-60 243.0
68 TraesCS2D01G273000 chr3A 85.492 193 26 2 1097 1288 686762582 686762773 3.680000e-47 200.0
69 TraesCS2D01G273000 chr7D 98.519 135 2 0 3686 3820 545351519 545351653 7.800000e-59 239.0
70 TraesCS2D01G273000 chr7D 94.964 139 5 2 3681 3819 251035916 251036052 3.650000e-52 217.0
71 TraesCS2D01G273000 chr7D 86.325 117 12 4 5427 5540 453342366 453342481 2.280000e-24 124.0
72 TraesCS2D01G273000 chr1D 98.473 131 2 0 3691 3821 43298760 43298890 1.300000e-56 231.0
73 TraesCS2D01G273000 chr1D 96.923 130 4 0 3689 3818 469018556 469018685 1.020000e-52 219.0
74 TraesCS2D01G273000 chr1D 96.241 133 4 1 3685 3817 15362191 15362060 3.650000e-52 217.0
75 TraesCS2D01G273000 chr1D 94.366 142 7 1 3691 3831 90578313 90578172 3.650000e-52 217.0
76 TraesCS2D01G273000 chr1D 96.875 128 4 0 3690 3817 258059667 258059540 1.310000e-51 215.0
77 TraesCS2D01G273000 chr1D 96.850 127 4 0 3691 3817 416095868 416095994 4.730000e-51 213.0
78 TraesCS2D01G273000 chr1D 95.489 133 6 0 3690 3822 475911945 475911813 4.730000e-51 213.0
79 TraesCS2D01G273000 chr1D 93.525 139 9 0 3684 3822 190787432 190787294 2.200000e-49 207.0
80 TraesCS2D01G273000 chr1D 83.648 159 18 7 5425 5577 386431952 386432108 6.290000e-30 143.0
81 TraesCS2D01G273000 chr1D 84.906 106 11 4 5445 5549 359723387 359723488 1.070000e-17 102.0
82 TraesCS2D01G273000 chr1D 89.706 68 7 0 5426 5493 492643872 492643939 2.990000e-13 87.9
83 TraesCS2D01G273000 chr7A 98.450 129 2 0 3690 3818 442265754 442265882 1.690000e-55 228.0
84 TraesCS2D01G273000 chr7B 96.377 138 3 1 3682 3817 46022961 46022824 6.070000e-55 226.0
85 TraesCS2D01G273000 chr7B 95.683 139 4 2 3683 3820 372834974 372835111 7.850000e-54 222.0
86 TraesCS2D01G273000 chr7B 81.290 155 17 10 5431 5577 78552430 78552580 1.370000e-21 115.0
87 TraesCS2D01G273000 chr6A 98.438 128 2 0 3691 3818 32749188 32749061 6.070000e-55 226.0
88 TraesCS2D01G273000 chr6A 97.710 131 3 0 3688 3818 494467278 494467148 6.070000e-55 226.0
89 TraesCS2D01G273000 chr1B 98.438 128 2 0 3690 3817 683747959 683748086 6.070000e-55 226.0
90 TraesCS2D01G273000 chr1B 97.692 130 3 0 3689 3818 623732113 623731984 2.180000e-54 224.0
91 TraesCS2D01G273000 chr1B 83.019 159 19 7 5425 5577 518807883 518808039 2.930000e-28 137.0
92 TraesCS2D01G273000 chr1B 81.529 157 23 3 5427 5577 130540164 130540320 2.280000e-24 124.0
93 TraesCS2D01G273000 chr1A 96.970 132 3 1 3688 3818 487490854 487490723 2.820000e-53 220.0
94 TraesCS2D01G273000 chr1A 84.516 155 14 9 5431 5577 459273231 459273383 1.750000e-30 145.0
95 TraesCS2D01G273000 chr1A 83.648 159 18 7 5425 5577 486340617 486340773 6.290000e-30 143.0
96 TraesCS2D01G273000 chr1A 87.368 95 9 3 5441 5533 394878075 394878168 8.250000e-19 106.0
97 TraesCS2D01G273000 chrUn 96.923 130 4 0 3688 3817 74542133 74542262 1.020000e-52 219.0
98 TraesCS2D01G273000 chrUn 95.620 137 4 2 3681 3817 128516270 128516404 1.020000e-52 219.0
99 TraesCS2D01G273000 chrUn 94.928 138 5 2 3690 3825 468101790 468101927 1.310000e-51 215.0
100 TraesCS2D01G273000 chrUn 96.094 128 5 0 3691 3818 11031786 11031659 6.110000e-50 209.0
101 TraesCS2D01G273000 chrUn 96.094 128 5 0 3690 3817 19647284 19647157 6.110000e-50 209.0
102 TraesCS2D01G273000 chrUn 96.094 128 5 0 3690 3817 104559181 104559308 6.110000e-50 209.0
103 TraesCS2D01G273000 chrUn 94.776 134 7 0 3687 3820 396963132 396962999 6.110000e-50 209.0
104 TraesCS2D01G273000 chrUn 96.063 127 5 0 3691 3817 87983257 87983131 2.200000e-49 207.0
105 TraesCS2D01G273000 chrUn 94.697 132 7 0 3691 3822 86630846 86630715 7.910000e-49 206.0
106 TraesCS2D01G273000 chrUn 83.648 159 18 7 5425 5577 480163314 480163470 6.290000e-30 143.0
107 TraesCS2D01G273000 chr5A 81.290 155 21 6 5431 5578 660831098 660831251 1.060000e-22 119.0
108 TraesCS2D01G273000 chr4B 84.615 117 13 4 5437 5549 414800863 414800748 1.770000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G273000 chr2D 338666087 338672105 6018 True 11116.000000 11116 100.000000 1 6019 1 chr2D.!!$R2 6018
1 TraesCS2D01G273000 chr2D 548611058 548611985 927 True 1343.000000 1343 92.788000 1 928 1 chr2D.!!$R3 927
2 TraesCS2D01G273000 chr2A 448506772 448509273 2501 True 3945.000000 3945 95.272000 943 3427 1 chr2A.!!$R1 2484
3 TraesCS2D01G273000 chr2A 448499181 448501654 2473 True 1953.500000 3472 95.518000 3426 6019 2 chr2A.!!$R2 2593
4 TraesCS2D01G273000 chr2A 55939993 55940919 926 False 1184.000000 1184 89.807000 1 926 1 chr2A.!!$F1 925
5 TraesCS2D01G273000 chr3B 225166844 225172769 5925 False 820.142857 1923 91.210286 925 6019 7 chr3B.!!$F1 5094
6 TraesCS2D01G273000 chr3D 153494092 153495075 983 False 1563.000000 1563 95.110000 925 1926 1 chr3D.!!$F2 1001
7 TraesCS2D01G273000 chr3D 7696564 7697439 875 False 1347.000000 1347 94.344000 1 883 1 chr3D.!!$F1 882
8 TraesCS2D01G273000 chr3D 153501442 153506610 5168 False 632.857143 1096 91.370857 1921 6019 7 chr3D.!!$F5 4098
9 TraesCS2D01G273000 chr4D 308810979 308811906 927 False 1393.000000 1393 93.763000 1 928 1 chr4D.!!$F2 927
10 TraesCS2D01G273000 chr6D 345787570 345788505 935 False 1332.000000 1332 92.553000 1 926 1 chr6D.!!$F1 925
11 TraesCS2D01G273000 chr6D 42385169 42386095 926 True 1308.000000 1308 92.077000 1 933 1 chr6D.!!$R1 932
12 TraesCS2D01G273000 chr5D 486839221 486840152 931 False 1319.000000 1319 92.283000 1 928 1 chr5D.!!$F5 927
13 TraesCS2D01G273000 chr5D 549500964 549501892 928 False 1319.000000 1319 92.382000 1 926 1 chr5D.!!$F6 925
14 TraesCS2D01G273000 chr5D 48381237 48382162 925 False 1290.000000 1290 91.810000 1 926 1 chr5D.!!$F2 925
15 TraesCS2D01G273000 chr2B 405270899 405279189 8290 True 481.763636 1090 92.238909 1037 6019 11 chr2B.!!$R1 4982
16 TraesCS2D01G273000 chr3A 176155606 176164110 8504 True 713.166667 1068 92.724167 1013 4294 6 chr3A.!!$R2 3281
17 TraesCS2D01G273000 chr3A 176148636 176150111 1475 True 361.500000 475 89.826000 4290 6019 4 chr3A.!!$R1 1729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 500 1.321074 CGGGAAAGGTAGAGCTCGGT 61.321 60.0 8.37 0.0 0.00 4.69 F
1487 8873 0.981183 AAGGTAATCCGCACACCTGA 59.019 50.0 0.00 0.0 41.90 3.86 F
2735 10640 0.827925 TCGGTCTTCCTGTGAGCAGT 60.828 55.0 0.00 0.0 41.02 4.40 F
3706 11770 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.0 0.00 0.0 0.00 4.12 F
3707 11771 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.0 0.00 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 9456 1.376553 GAGCCTTCTGTGTCCCTGC 60.377 63.158 0.00 0.0 0.00 4.85 R
2927 10879 0.035036 TACCGGTTTGGCGTGAATGA 59.965 50.000 15.04 0.0 43.94 2.57 R
3800 11864 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.0 0.00 4.12 R
4632 14314 0.463116 AAACAAGTCAACGACCGGCT 60.463 50.000 0.00 0.0 32.18 5.52 R
5686 15786 1.086067 ATGAACAGCTCGCCACATCG 61.086 55.000 0.00 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 174 2.029964 GAGTTGGGCGTCGGTGAA 59.970 61.111 0.00 0.00 0.00 3.18
264 279 3.775654 GCTGAGTCTCCACCCCGG 61.776 72.222 0.00 0.00 0.00 5.73
390 405 3.072468 TTCGGGGAATCGCTCGGT 61.072 61.111 0.00 0.00 0.00 4.69
429 444 3.700831 GAGAGGGAGGGCTCGACGA 62.701 68.421 0.00 0.00 0.00 4.20
485 500 1.321074 CGGGAAAGGTAGAGCTCGGT 61.321 60.000 8.37 0.00 0.00 4.69
636 667 3.525199 AGGAATCAATGGTAAGGCTGACT 59.475 43.478 1.13 0.00 0.00 3.41
641 672 2.820037 GGTAAGGCTGACTGGCGC 60.820 66.667 0.00 0.00 46.88 6.53
813 850 3.259020 CGCCGGCGCTAATTTCGA 61.259 61.111 38.48 0.00 0.00 3.71
854 892 3.691342 CCTGGGAACGCGACTGGA 61.691 66.667 15.93 0.00 0.00 3.86
866 904 1.705256 CGACTGGACCGATTTTTCGA 58.295 50.000 0.00 0.00 34.64 3.71
905 943 1.349357 GTCTGAAGAGGCCTTTCTGGT 59.651 52.381 22.29 0.97 38.35 4.00
941 979 2.562738 TGCTCTAAACTGCACTGCTCTA 59.437 45.455 1.98 0.00 33.94 2.43
985 1027 4.976925 CTGCTATCGCGGGCCAGG 62.977 72.222 6.13 0.00 38.91 4.45
1191 8558 3.626729 GGAGGCTGTTCTACTACCTGGTA 60.627 52.174 6.36 6.36 0.00 3.25
1342 8717 3.886505 ACCGGCAGTTTCTTTTGTTATCA 59.113 39.130 0.00 0.00 0.00 2.15
1413 8793 1.594331 GTCCCTTCAACTTTGAGCGT 58.406 50.000 0.00 0.00 38.61 5.07
1481 8861 1.816074 TGGTCAAAGGTAATCCGCAC 58.184 50.000 0.00 0.00 39.05 5.34
1487 8873 0.981183 AAGGTAATCCGCACACCTGA 59.019 50.000 0.00 0.00 41.90 3.86
1488 8874 1.204146 AGGTAATCCGCACACCTGAT 58.796 50.000 0.00 0.00 41.18 2.90
1489 8875 1.559682 AGGTAATCCGCACACCTGATT 59.440 47.619 0.00 0.00 41.18 2.57
1490 8876 1.940613 GGTAATCCGCACACCTGATTC 59.059 52.381 0.00 0.00 31.55 2.52
1491 8877 2.420129 GGTAATCCGCACACCTGATTCT 60.420 50.000 0.00 0.00 31.55 2.40
1492 8878 1.742761 AATCCGCACACCTGATTCTG 58.257 50.000 0.00 0.00 0.00 3.02
1619 9005 5.486735 TTTTCCATGCCAAGTGATTGAAT 57.513 34.783 0.00 0.00 0.00 2.57
1663 9049 7.093068 TGGAGTAACTAGGTTTCAAGCATGATA 60.093 37.037 0.00 0.00 34.96 2.15
1797 9220 1.719600 ATCTCTGCTTCAGTTGCGAC 58.280 50.000 0.00 0.00 32.61 5.19
2033 9456 6.745907 TCTTACATCTCATCTTTACGTCGTTG 59.254 38.462 1.78 0.00 0.00 4.10
2098 9522 8.664669 AGGTCATTCCCACTAACATTTTATTT 57.335 30.769 0.00 0.00 36.75 1.40
2398 10303 1.974875 CAGTGCTGCTTGCCATGGA 60.975 57.895 18.40 0.00 42.00 3.41
2425 10330 7.893302 ACATTCTGGGGAAAAGTTAATGATGTA 59.107 33.333 0.00 0.00 34.90 2.29
2536 10441 5.606348 TTGTAAGGCCTCAATTTGTGTTT 57.394 34.783 5.23 0.00 0.00 2.83
2702 10607 3.468326 GAGGAAGAGGATGGCGGGC 62.468 68.421 0.00 0.00 0.00 6.13
2735 10640 0.827925 TCGGTCTTCCTGTGAGCAGT 60.828 55.000 0.00 0.00 41.02 4.40
2748 10653 1.630244 GAGCAGTGGACATGTCACGC 61.630 60.000 26.47 23.50 39.86 5.34
2756 10661 2.359107 CATGTCACGCTGTGGCCT 60.359 61.111 3.32 0.00 37.35 5.19
2927 10879 5.129980 TGGATGATGAAGATGTAAGAGCTGT 59.870 40.000 0.00 0.00 0.00 4.40
3196 11148 1.363246 TTACAGGTATGGGGCACACA 58.637 50.000 0.00 0.00 0.00 3.72
3219 11171 7.542824 CACATGCAACTTGATCATTTGACAATA 59.457 33.333 17.65 3.18 0.00 1.90
3260 11212 0.593128 CCTGCAAAAGAAGACACCGG 59.407 55.000 0.00 0.00 0.00 5.28
3278 11230 7.878127 AGACACCGGTTAATATATGGAATCAAG 59.122 37.037 2.97 0.00 0.00 3.02
3291 11243 3.017442 GGAATCAAGTTAGGGTGAAGGC 58.983 50.000 0.00 0.00 0.00 4.35
3315 11267 6.576662 TCAGTAGAGAACAGGTTGAACTAG 57.423 41.667 0.00 0.00 0.00 2.57
3358 11318 4.743493 TGTCCAAGCAAAACTGACTTTTC 58.257 39.130 0.00 0.00 28.85 2.29
3363 11324 5.460091 CCAAGCAAAACTGACTTTTCTTAGC 59.540 40.000 0.00 0.00 28.85 3.09
3488 11454 1.658095 GAAGCACAAGTCTCAGATCGC 59.342 52.381 0.00 0.00 0.00 4.58
3497 11463 3.679389 AGTCTCAGATCGCACCAAATTT 58.321 40.909 0.00 0.00 0.00 1.82
3689 11753 9.850628 CCTTTAATTCATATGCCTACATTGATG 57.149 33.333 0.00 0.00 37.74 3.07
3694 11758 8.783833 ATTCATATGCCTACATTGATGTACTC 57.216 34.615 0.00 0.00 41.97 2.59
3695 11759 6.701340 TCATATGCCTACATTGATGTACTCC 58.299 40.000 0.00 0.00 41.97 3.85
3696 11760 3.838244 TGCCTACATTGATGTACTCCC 57.162 47.619 0.00 0.00 41.97 4.30
3697 11761 3.384168 TGCCTACATTGATGTACTCCCT 58.616 45.455 0.00 0.00 41.97 4.20
3698 11762 3.388024 TGCCTACATTGATGTACTCCCTC 59.612 47.826 0.00 0.00 41.97 4.30
3699 11763 3.244249 GCCTACATTGATGTACTCCCTCC 60.244 52.174 0.00 0.00 41.97 4.30
3700 11764 3.005897 CCTACATTGATGTACTCCCTCCG 59.994 52.174 0.00 0.00 41.97 4.63
3701 11765 2.467880 ACATTGATGTACTCCCTCCGT 58.532 47.619 0.00 0.00 39.68 4.69
3702 11766 2.431057 ACATTGATGTACTCCCTCCGTC 59.569 50.000 0.00 0.00 39.68 4.79
3703 11767 1.481871 TTGATGTACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
3704 11768 0.396695 TGATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
3705 11769 0.396695 GATGTACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
3706 11770 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3707 11771 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3708 11772 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3709 11773 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3710 11774 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3711 11775 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3712 11776 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3713 11777 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3714 11778 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3715 11779 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3716 11780 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3717 11781 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3718 11782 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3719 11783 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3720 11784 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3721 11785 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3722 11786 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3723 11787 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3724 11788 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3725 11789 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3726 11790 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3727 11791 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3728 11792 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3736 11800 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3737 11801 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3738 11802 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3739 11803 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3740 11804 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3741 11805 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3752 11816 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
3753 11817 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
3754 11818 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
3755 11819 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
3756 11820 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
3757 11821 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
3758 11822 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
3759 11823 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
3760 11824 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
3761 11825 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
3764 11828 9.478768 TGTATCAAGTCACGTTTTAGTATTTGA 57.521 29.630 0.00 0.00 0.00 2.69
3768 11832 9.478768 TCAAGTCACGTTTTAGTATTTGATACA 57.521 29.630 0.00 0.00 38.21 2.29
3771 11835 9.095065 AGTCACGTTTTAGTATTTGATACATCC 57.905 33.333 0.00 0.00 38.21 3.51
3772 11836 8.054236 GTCACGTTTTAGTATTTGATACATCCG 58.946 37.037 0.00 0.00 38.21 4.18
3773 11837 7.760794 TCACGTTTTAGTATTTGATACATCCGT 59.239 33.333 0.00 0.00 38.21 4.69
3774 11838 9.022915 CACGTTTTAGTATTTGATACATCCGTA 57.977 33.333 0.00 0.00 38.21 4.02
3775 11839 9.754382 ACGTTTTAGTATTTGATACATCCGTAT 57.246 29.630 1.42 0.00 41.16 3.06
3792 11856 9.530633 ACATCCGTATCTAGACAAATTTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
3793 11857 9.529325 CATCCGTATCTAGACAAATTTAAGACA 57.471 33.333 0.00 0.00 0.00 3.41
3795 11859 9.582431 TCCGTATCTAGACAAATTTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
3796 11860 9.582431 CCGTATCTAGACAAATTTAAGACAAGA 57.418 33.333 0.00 0.00 0.00 3.02
3804 11868 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
3805 11869 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
3806 11870 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
3807 11871 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
3808 11872 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
3809 11873 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3810 11874 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3811 11875 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3812 11876 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3813 11877 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3825 11889 2.756760 GACGGAGGGAGTACATGTGTTA 59.243 50.000 9.11 0.00 0.00 2.41
3929 11993 9.647797 TTCAGCTACAAAGAACGAGATATTAAA 57.352 29.630 0.00 0.00 0.00 1.52
3930 11994 9.647797 TCAGCTACAAAGAACGAGATATTAAAA 57.352 29.630 0.00 0.00 0.00 1.52
4076 13692 6.804534 TGTTAATGTTCAAACTTTTCGCAG 57.195 33.333 0.14 0.00 0.00 5.18
4078 13694 6.252441 TGTTAATGTTCAAACTTTTCGCAGTG 59.748 34.615 0.14 0.00 0.00 3.66
4456 14075 1.268896 CCATCTGATGCGCCAATTGAC 60.269 52.381 12.17 0.00 0.00 3.18
4490 14172 8.220755 AGAACTCTCTCTAACATAACTAGCAG 57.779 38.462 0.00 0.00 0.00 4.24
4491 14173 7.832187 AGAACTCTCTCTAACATAACTAGCAGT 59.168 37.037 0.00 0.00 0.00 4.40
4492 14174 7.562454 ACTCTCTCTAACATAACTAGCAGTC 57.438 40.000 0.00 0.00 0.00 3.51
4493 14175 7.113437 ACTCTCTCTAACATAACTAGCAGTCA 58.887 38.462 0.00 0.00 0.00 3.41
4494 14176 7.777910 ACTCTCTCTAACATAACTAGCAGTCAT 59.222 37.037 0.00 0.00 0.00 3.06
4495 14177 8.526667 TCTCTCTAACATAACTAGCAGTCATT 57.473 34.615 0.00 0.00 0.00 2.57
4496 14178 8.409371 TCTCTCTAACATAACTAGCAGTCATTG 58.591 37.037 0.00 0.00 0.00 2.82
4497 14179 8.293699 TCTCTAACATAACTAGCAGTCATTGA 57.706 34.615 0.00 0.00 0.00 2.57
4498 14180 8.409371 TCTCTAACATAACTAGCAGTCATTGAG 58.591 37.037 0.00 0.00 0.00 3.02
4499 14181 8.293699 TCTAACATAACTAGCAGTCATTGAGA 57.706 34.615 0.00 0.00 0.00 3.27
4500 14182 8.749354 TCTAACATAACTAGCAGTCATTGAGAA 58.251 33.333 0.00 0.00 0.00 2.87
4501 14183 7.602517 AACATAACTAGCAGTCATTGAGAAC 57.397 36.000 0.00 0.00 0.00 3.01
4502 14184 6.940739 ACATAACTAGCAGTCATTGAGAACT 58.059 36.000 0.00 0.00 0.00 3.01
4503 14185 6.815641 ACATAACTAGCAGTCATTGAGAACTG 59.184 38.462 0.00 0.00 0.00 3.16
4504 14186 5.474578 AACTAGCAGTCATTGAGAACTGA 57.525 39.130 6.69 0.00 31.28 3.41
4505 14187 5.474578 ACTAGCAGTCATTGAGAACTGAA 57.525 39.130 6.69 0.00 31.28 3.02
4506 14188 5.233988 ACTAGCAGTCATTGAGAACTGAAC 58.766 41.667 6.69 0.00 31.28 3.18
4507 14189 4.077300 AGCAGTCATTGAGAACTGAACA 57.923 40.909 6.69 0.00 31.28 3.18
4508 14190 3.812053 AGCAGTCATTGAGAACTGAACAC 59.188 43.478 6.69 0.00 31.28 3.32
4509 14191 3.058639 GCAGTCATTGAGAACTGAACACC 60.059 47.826 6.69 0.00 31.28 4.16
4510 14192 4.384056 CAGTCATTGAGAACTGAACACCT 58.616 43.478 0.00 0.00 31.28 4.00
4511 14193 4.212847 CAGTCATTGAGAACTGAACACCTG 59.787 45.833 0.00 0.00 31.28 4.00
4512 14194 3.058639 GTCATTGAGAACTGAACACCTGC 60.059 47.826 0.00 0.00 0.00 4.85
4513 14195 1.581934 TTGAGAACTGAACACCTGCG 58.418 50.000 0.00 0.00 0.00 5.18
4514 14196 0.750249 TGAGAACTGAACACCTGCGA 59.250 50.000 0.00 0.00 0.00 5.10
4515 14197 1.269778 TGAGAACTGAACACCTGCGAG 60.270 52.381 0.00 0.00 0.00 5.03
4516 14198 1.000163 GAGAACTGAACACCTGCGAGA 60.000 52.381 0.00 0.00 0.00 4.04
4517 14199 1.412710 AGAACTGAACACCTGCGAGAA 59.587 47.619 0.00 0.00 0.00 2.87
4518 14200 2.037772 AGAACTGAACACCTGCGAGAAT 59.962 45.455 0.00 0.00 0.00 2.40
4519 14201 2.550830 ACTGAACACCTGCGAGAATT 57.449 45.000 0.00 0.00 0.00 2.17
4520 14202 2.417719 ACTGAACACCTGCGAGAATTC 58.582 47.619 0.00 0.00 0.00 2.17
4521 14203 2.224281 ACTGAACACCTGCGAGAATTCA 60.224 45.455 8.44 0.00 0.00 2.57
4522 14204 2.807967 CTGAACACCTGCGAGAATTCAA 59.192 45.455 8.44 0.00 0.00 2.69
4523 14205 3.210227 TGAACACCTGCGAGAATTCAAA 58.790 40.909 8.44 0.00 0.00 2.69
4524 14206 3.629855 TGAACACCTGCGAGAATTCAAAA 59.370 39.130 8.44 0.00 0.00 2.44
4525 14207 3.904136 ACACCTGCGAGAATTCAAAAG 57.096 42.857 8.44 0.00 0.00 2.27
4526 14208 2.030805 ACACCTGCGAGAATTCAAAAGC 60.031 45.455 8.44 7.74 0.00 3.51
4527 14209 2.030893 CACCTGCGAGAATTCAAAAGCA 60.031 45.455 8.44 11.69 0.00 3.91
4528 14210 2.622942 ACCTGCGAGAATTCAAAAGCAA 59.377 40.909 8.44 0.00 34.04 3.91
4529 14211 3.256631 ACCTGCGAGAATTCAAAAGCAAT 59.743 39.130 8.44 2.50 34.04 3.56
4530 14212 3.855950 CCTGCGAGAATTCAAAAGCAATC 59.144 43.478 8.44 0.00 34.04 2.67
4531 14213 4.380233 CCTGCGAGAATTCAAAAGCAATCT 60.380 41.667 8.44 0.00 34.04 2.40
4532 14214 5.163723 CCTGCGAGAATTCAAAAGCAATCTA 60.164 40.000 8.44 0.00 34.04 1.98
4533 14215 5.872635 TGCGAGAATTCAAAAGCAATCTAG 58.127 37.500 8.44 0.00 0.00 2.43
4534 14216 5.643348 TGCGAGAATTCAAAAGCAATCTAGA 59.357 36.000 8.44 0.00 0.00 2.43
4535 14217 6.317140 TGCGAGAATTCAAAAGCAATCTAGAT 59.683 34.615 8.44 0.00 0.00 1.98
4536 14218 7.148188 TGCGAGAATTCAAAAGCAATCTAGATT 60.148 33.333 12.37 12.37 0.00 2.40
4537 14219 8.338259 GCGAGAATTCAAAAGCAATCTAGATTA 58.662 33.333 17.53 0.31 0.00 1.75
4548 14230 7.800155 AGCAATCTAGATTAAGAAAAGGAGC 57.200 36.000 17.53 12.22 0.00 4.70
4549 14231 7.572814 AGCAATCTAGATTAAGAAAAGGAGCT 58.427 34.615 17.53 14.10 0.00 4.09
4550 14232 8.709308 AGCAATCTAGATTAAGAAAAGGAGCTA 58.291 33.333 17.53 0.00 0.00 3.32
4551 14233 8.769891 GCAATCTAGATTAAGAAAAGGAGCTAC 58.230 37.037 17.53 0.00 0.00 3.58
4552 14234 9.823647 CAATCTAGATTAAGAAAAGGAGCTACA 57.176 33.333 17.53 0.00 0.00 2.74
4645 14327 0.243095 AGAGTTAGCCGGTCGTTGAC 59.757 55.000 1.90 0.00 0.00 3.18
4655 14337 1.268335 CGGTCGTTGACTTGTTTTGGG 60.268 52.381 0.00 0.00 32.47 4.12
4831 14522 9.632807 GAGAATCTAGCATATTAGATTGTCGTT 57.367 33.333 12.43 0.00 45.67 3.85
4848 14539 3.807622 GTCGTTTTCCATCTTCAGTGACA 59.192 43.478 0.00 0.00 0.00 3.58
4853 14544 1.629861 TCCATCTTCAGTGACATGCCA 59.370 47.619 0.00 0.00 0.00 4.92
4861 14552 0.257905 AGTGACATGCCAGATGCCAT 59.742 50.000 0.00 0.00 40.16 4.40
4924 14616 5.710567 GGCTGAGGGTTTTTGACTAGTTAAT 59.289 40.000 0.32 0.00 0.00 1.40
5174 15158 2.419851 GCCTACATTCTCTTGCTGAGCT 60.420 50.000 5.83 0.00 42.38 4.09
5202 15186 3.864243 ACGAACTGTCTTAACACAACCA 58.136 40.909 0.00 0.00 0.00 3.67
5347 15331 4.330250 CCTGAAGATTCATCCAACACACT 58.670 43.478 0.00 0.00 36.46 3.55
5369 15353 8.612619 ACACTATGTAGTTCACAGAAAGTTTTG 58.387 33.333 0.00 0.00 41.51 2.44
5378 15362 3.068024 CACAGAAAGTTTTGGCTGCCTAA 59.932 43.478 21.03 16.17 31.74 2.69
5385 15369 3.267031 AGTTTTGGCTGCCTAATAGGAGT 59.733 43.478 21.03 3.63 37.67 3.85
5444 15428 5.827267 AGAGAAATACTACTACCTCCGTTCC 59.173 44.000 0.00 0.00 0.00 3.62
5445 15429 5.513233 AGAAATACTACTACCTCCGTTCCA 58.487 41.667 0.00 0.00 0.00 3.53
5491 15475 7.914427 TTTCAGTATGGACTACATATGGACT 57.086 36.000 7.80 0.00 43.55 3.85
5492 15476 6.901081 TCAGTATGGACTACATATGGACTG 57.099 41.667 7.80 0.48 43.55 3.51
5577 15562 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
5816 15918 0.524862 CGGAGAAAAGCAGCAGCATT 59.475 50.000 3.17 0.00 45.49 3.56
5818 15920 1.542915 GGAGAAAAGCAGCAGCATTCA 59.457 47.619 17.57 0.00 45.49 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 4.651008 GACGGCGTCCACCAACGA 62.651 66.667 28.72 0.00 45.37 3.85
68 83 2.743928 CCGGCAACAGCAGAGGAC 60.744 66.667 0.00 0.00 0.00 3.85
244 259 1.903877 CGGGGTGGAGACTCAGCAAT 61.904 60.000 4.53 0.00 36.92 3.56
390 405 2.012794 TCCCTCCCTCTCCCGATGA 61.013 63.158 0.00 0.00 0.00 2.92
471 486 0.033405 TAGCCACCGAGCTCTACCTT 60.033 55.000 12.85 0.00 43.67 3.50
485 500 2.446610 CAGCCCTAGCCCTAGCCA 60.447 66.667 0.00 0.00 41.25 4.75
607 638 0.991920 ACCATTGATTCCTCACGGGT 59.008 50.000 0.00 0.00 34.69 5.28
641 672 0.462789 GGAATCAATGGCAAGGCTGG 59.537 55.000 0.00 0.00 0.00 4.85
813 850 4.360405 ATTTTCGCCGGCCTGGGT 62.360 61.111 23.46 0.89 38.63 4.51
854 892 2.385091 CCGGCGTCGAAAAATCGGT 61.385 57.895 12.93 0.00 39.00 4.69
941 979 8.457261 GGATTCGGTAAGACGTTAGTATCATAT 58.543 37.037 0.00 0.00 34.94 1.78
983 1025 1.683011 CCATTGACGGATTTGAGGCCT 60.683 52.381 3.86 3.86 0.00 5.19
984 1026 0.740737 CCATTGACGGATTTGAGGCC 59.259 55.000 0.00 0.00 0.00 5.19
985 1027 0.101219 GCCATTGACGGATTTGAGGC 59.899 55.000 0.00 0.00 0.00 4.70
986 1028 0.378257 CGCCATTGACGGATTTGAGG 59.622 55.000 0.00 0.00 0.00 3.86
987 1029 1.062587 GACGCCATTGACGGATTTGAG 59.937 52.381 0.00 0.00 34.00 3.02
1191 8558 2.885861 GGATCACGCTCCGACAGT 59.114 61.111 0.00 0.00 0.00 3.55
1221 8588 2.029844 GTTGAGCCAGAGCACGACC 61.030 63.158 0.00 0.00 43.56 4.79
1342 8717 3.173953 TCCCAGCCAAAATCACAAGAT 57.826 42.857 0.00 0.00 35.53 2.40
1481 8861 5.180117 CCTAAACTGTGTTCAGAATCAGGTG 59.820 44.000 17.12 5.55 43.76 4.00
1487 8873 4.757149 GTGCTCCTAAACTGTGTTCAGAAT 59.243 41.667 2.17 0.00 43.76 2.40
1488 8874 4.127171 GTGCTCCTAAACTGTGTTCAGAA 58.873 43.478 2.17 0.00 43.76 3.02
1489 8875 3.133901 TGTGCTCCTAAACTGTGTTCAGA 59.866 43.478 2.17 0.00 43.76 3.27
1490 8876 3.466836 TGTGCTCCTAAACTGTGTTCAG 58.533 45.455 0.00 0.00 46.18 3.02
1491 8877 3.466836 CTGTGCTCCTAAACTGTGTTCA 58.533 45.455 0.00 0.00 0.00 3.18
1492 8878 2.808543 CCTGTGCTCCTAAACTGTGTTC 59.191 50.000 0.00 0.00 0.00 3.18
1619 9005 8.564574 GTTACTCCAGTTCAATGACACATTTAA 58.435 33.333 0.00 0.00 0.00 1.52
1633 9019 5.408909 GCTTGAAACCTAGTTACTCCAGTTC 59.591 44.000 0.00 0.00 0.00 3.01
1663 9049 1.384643 GGCAGGGGAGTCCAGGTAT 60.385 63.158 12.30 0.00 38.24 2.73
2033 9456 1.376553 GAGCCTTCTGTGTCCCTGC 60.377 63.158 0.00 0.00 0.00 4.85
2061 9485 6.270695 AGTGGGAATGACCTTCAAATTGATTT 59.729 34.615 0.00 0.00 38.98 2.17
2398 10303 7.235399 ACATCATTAACTTTTCCCCAGAATGTT 59.765 33.333 0.00 0.00 35.04 2.71
2425 10330 7.449247 GGACTCTATCTATCTTTTCTTGGCAT 58.551 38.462 0.00 0.00 0.00 4.40
2536 10441 4.356405 TCTTTCAGTTCCTGCAGATGAA 57.644 40.909 17.39 15.99 0.00 2.57
2735 10640 1.301637 CCACAGCGTGACATGTCCA 60.302 57.895 22.85 8.51 35.23 4.02
2748 10653 3.060615 GCCAAGCTCAGGCCACAG 61.061 66.667 17.12 0.00 46.50 3.66
2756 10661 0.175760 GTGATCTACCGCCAAGCTCA 59.824 55.000 0.00 0.00 0.00 4.26
2821 10768 8.297470 ACCAAGCATACTTATGAAAATGATGT 57.703 30.769 0.15 0.00 35.75 3.06
2822 10769 7.864379 GGACCAAGCATACTTATGAAAATGATG 59.136 37.037 0.15 0.00 35.75 3.07
2823 10770 7.781693 AGGACCAAGCATACTTATGAAAATGAT 59.218 33.333 0.15 0.00 35.75 2.45
2824 10771 7.118723 AGGACCAAGCATACTTATGAAAATGA 58.881 34.615 0.15 0.00 35.75 2.57
2825 10772 7.284034 AGAGGACCAAGCATACTTATGAAAATG 59.716 37.037 0.15 0.00 35.75 2.32
2826 10773 7.349598 AGAGGACCAAGCATACTTATGAAAAT 58.650 34.615 0.15 0.00 35.75 1.82
2827 10774 6.721318 AGAGGACCAAGCATACTTATGAAAA 58.279 36.000 0.15 0.00 35.75 2.29
2927 10879 0.035036 TACCGGTTTGGCGTGAATGA 59.965 50.000 15.04 0.00 43.94 2.57
2999 10951 6.970484 ACAAGAGTTAGTTAATTTGTGCCAG 58.030 36.000 0.00 0.00 0.00 4.85
3156 11108 5.627499 AAATAAGTACGCGATATCCCGTA 57.373 39.130 15.93 16.61 38.75 4.02
3158 11110 5.393124 TGTAAATAAGTACGCGATATCCCG 58.607 41.667 15.93 8.21 0.00 5.14
3219 11171 8.827677 GCAGGAAATAAGTTACTCGATGTTAAT 58.172 33.333 0.00 0.00 0.00 1.40
3226 11178 6.932400 TCTTTTGCAGGAAATAAGTTACTCGA 59.068 34.615 0.00 0.00 0.00 4.04
3278 11230 3.097614 TCTACTGAGCCTTCACCCTAAC 58.902 50.000 0.00 0.00 0.00 2.34
3291 11243 5.461032 AGTTCAACCTGTTCTCTACTGAG 57.539 43.478 0.00 0.00 41.51 3.35
3358 11318 7.115378 CCAATCTGTTAGTTTTGCTTTGCTAAG 59.885 37.037 3.31 3.31 34.36 2.18
3363 11324 6.534793 ACAACCAATCTGTTAGTTTTGCTTTG 59.465 34.615 0.00 0.00 0.00 2.77
3483 11449 3.740044 TCGAAGAAATTTGGTGCGATC 57.260 42.857 0.00 0.00 0.00 3.69
3488 11454 8.741101 TTACATTGAATCGAAGAAATTTGGTG 57.259 30.769 0.00 0.00 43.58 4.17
3497 11463 8.546597 TCACATTCTTTACATTGAATCGAAGA 57.453 30.769 0.00 0.00 45.75 2.87
3543 11533 7.803279 AGTAGGACTAAAGTTTGAAAGGTTG 57.197 36.000 0.00 0.00 0.00 3.77
3689 11753 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3690 11754 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3691 11755 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3692 11756 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3693 11757 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3694 11758 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3695 11759 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3696 11760 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3697 11761 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3698 11762 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3699 11763 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3700 11764 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3701 11765 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3702 11766 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3710 11774 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3711 11775 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3712 11776 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3713 11777 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3714 11778 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3715 11779 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3731 11795 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
3732 11796 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
3733 11797 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
3734 11798 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
3735 11799 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
3738 11802 9.478768 TCAAATACTAAAACGTGACTTGATACA 57.521 29.630 0.00 0.00 0.00 2.29
3742 11806 9.478768 TGTATCAAATACTAAAACGTGACTTGA 57.521 29.630 0.00 0.00 36.70 3.02
3745 11809 9.095065 GGATGTATCAAATACTAAAACGTGACT 57.905 33.333 0.00 0.00 36.70 3.41
3746 11810 8.054236 CGGATGTATCAAATACTAAAACGTGAC 58.946 37.037 0.00 0.00 36.70 3.67
3747 11811 7.760794 ACGGATGTATCAAATACTAAAACGTGA 59.239 33.333 0.00 0.00 36.70 4.35
3748 11812 7.902032 ACGGATGTATCAAATACTAAAACGTG 58.098 34.615 0.00 0.00 36.70 4.49
3749 11813 9.754382 ATACGGATGTATCAAATACTAAAACGT 57.246 29.630 0.00 0.00 36.56 3.99
3766 11830 9.530633 GTCTTAAATTTGTCTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
3767 11831 9.529325 TGTCTTAAATTTGTCTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
3769 11833 9.582431 CTTGTCTTAAATTTGTCTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
3770 11834 9.582431 TCTTGTCTTAAATTTGTCTAGATACGG 57.418 33.333 0.00 0.00 0.00 4.02
3778 11842 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
3779 11843 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
3780 11844 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
3781 11845 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
3782 11846 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
3783 11847 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
3784 11848 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
3785 11849 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
3786 11850 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
3787 11851 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3788 11852 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3789 11853 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3790 11854 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3791 11855 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3792 11856 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3793 11857 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3794 11858 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3795 11859 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3796 11860 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3797 11861 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3798 11862 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3799 11863 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3800 11864 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3801 11865 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
3802 11866 0.686769 ACATGTACTCCCTCCGTCCC 60.687 60.000 0.00 0.00 0.00 4.46
3803 11867 0.460311 CACATGTACTCCCTCCGTCC 59.540 60.000 0.00 0.00 0.00 4.79
3804 11868 1.183549 ACACATGTACTCCCTCCGTC 58.816 55.000 0.00 0.00 0.00 4.79
3805 11869 1.640917 AACACATGTACTCCCTCCGT 58.359 50.000 0.00 0.00 0.00 4.69
3806 11870 3.717707 CATAACACATGTACTCCCTCCG 58.282 50.000 0.00 0.00 0.00 4.63
3807 11871 3.134804 AGCATAACACATGTACTCCCTCC 59.865 47.826 0.00 0.00 0.00 4.30
3808 11872 4.408182 AGCATAACACATGTACTCCCTC 57.592 45.455 0.00 0.00 0.00 4.30
3809 11873 4.844349 AAGCATAACACATGTACTCCCT 57.156 40.909 0.00 0.00 0.00 4.20
3810 11874 5.527582 CCTTAAGCATAACACATGTACTCCC 59.472 44.000 0.00 0.00 0.00 4.30
3811 11875 5.007724 GCCTTAAGCATAACACATGTACTCC 59.992 44.000 0.00 0.00 42.97 3.85
3812 11876 6.049263 GCCTTAAGCATAACACATGTACTC 57.951 41.667 0.00 0.00 42.97 2.59
3929 11993 9.747898 TCCACAACAGAATATACCATACTTTTT 57.252 29.630 0.00 0.00 0.00 1.94
3930 11994 9.920946 ATCCACAACAGAATATACCATACTTTT 57.079 29.630 0.00 0.00 0.00 2.27
4021 13635 8.394877 CAAAGTTACACACTTGTGAGTTATTCA 58.605 33.333 16.24 0.00 45.77 2.57
4051 13665 7.329717 ACTGCGAAAAGTTTGAACATTAACAAA 59.670 29.630 0.00 0.00 34.33 2.83
4058 13673 3.115554 GCACTGCGAAAAGTTTGAACAT 58.884 40.909 0.00 0.00 0.00 2.71
4203 13822 6.405953 TGTACAATTACACACCCAAAAGTTGG 60.406 38.462 0.00 0.00 40.74 3.77
4456 14075 6.918626 TGTTAGAGAGAGTTCTTGTCATCTG 58.081 40.000 0.00 0.00 32.53 2.90
4490 14172 3.058639 GCAGGTGTTCAGTTCTCAATGAC 60.059 47.826 0.00 0.00 0.00 3.06
4491 14173 3.141398 GCAGGTGTTCAGTTCTCAATGA 58.859 45.455 0.00 0.00 0.00 2.57
4492 14174 2.096069 CGCAGGTGTTCAGTTCTCAATG 60.096 50.000 0.00 0.00 0.00 2.82
4493 14175 2.146342 CGCAGGTGTTCAGTTCTCAAT 58.854 47.619 0.00 0.00 0.00 2.57
4494 14176 1.138069 TCGCAGGTGTTCAGTTCTCAA 59.862 47.619 0.00 0.00 0.00 3.02
4495 14177 0.750249 TCGCAGGTGTTCAGTTCTCA 59.250 50.000 0.00 0.00 0.00 3.27
4496 14178 1.000163 TCTCGCAGGTGTTCAGTTCTC 60.000 52.381 0.00 0.00 0.00 2.87
4497 14179 1.040646 TCTCGCAGGTGTTCAGTTCT 58.959 50.000 0.00 0.00 0.00 3.01
4498 14180 1.865865 TTCTCGCAGGTGTTCAGTTC 58.134 50.000 0.00 0.00 0.00 3.01
4499 14181 2.550830 ATTCTCGCAGGTGTTCAGTT 57.449 45.000 0.00 0.00 0.00 3.16
4500 14182 2.224281 TGAATTCTCGCAGGTGTTCAGT 60.224 45.455 7.05 0.00 0.00 3.41
4501 14183 2.416747 TGAATTCTCGCAGGTGTTCAG 58.583 47.619 7.05 0.00 0.00 3.02
4502 14184 2.542020 TGAATTCTCGCAGGTGTTCA 57.458 45.000 7.05 0.00 0.00 3.18
4503 14185 3.896648 TTTGAATTCTCGCAGGTGTTC 57.103 42.857 7.05 0.00 0.00 3.18
4504 14186 3.550842 GCTTTTGAATTCTCGCAGGTGTT 60.551 43.478 7.05 0.00 0.00 3.32
4505 14187 2.030805 GCTTTTGAATTCTCGCAGGTGT 60.031 45.455 7.05 0.00 0.00 4.16
4506 14188 2.030893 TGCTTTTGAATTCTCGCAGGTG 60.031 45.455 7.05 0.00 0.00 4.00
4507 14189 2.229792 TGCTTTTGAATTCTCGCAGGT 58.770 42.857 7.05 0.00 0.00 4.00
4508 14190 2.995466 TGCTTTTGAATTCTCGCAGG 57.005 45.000 7.05 0.00 0.00 4.85
4509 14191 4.730657 AGATTGCTTTTGAATTCTCGCAG 58.269 39.130 7.05 0.00 0.00 5.18
4510 14192 4.771590 AGATTGCTTTTGAATTCTCGCA 57.228 36.364 7.05 7.15 0.00 5.10
4511 14193 6.111768 TCTAGATTGCTTTTGAATTCTCGC 57.888 37.500 7.05 4.69 0.00 5.03
4522 14204 8.681806 GCTCCTTTTCTTAATCTAGATTGCTTT 58.318 33.333 25.22 4.59 32.50 3.51
4523 14205 8.052141 AGCTCCTTTTCTTAATCTAGATTGCTT 58.948 33.333 25.22 4.96 32.50 3.91
4524 14206 7.572814 AGCTCCTTTTCTTAATCTAGATTGCT 58.427 34.615 25.22 17.76 32.50 3.91
4525 14207 7.800155 AGCTCCTTTTCTTAATCTAGATTGC 57.200 36.000 25.22 16.04 32.50 3.56
4526 14208 9.823647 TGTAGCTCCTTTTCTTAATCTAGATTG 57.176 33.333 25.22 11.60 32.50 2.67
4529 14211 8.643324 GGATGTAGCTCCTTTTCTTAATCTAGA 58.357 37.037 0.00 0.00 32.18 2.43
4530 14212 8.424918 TGGATGTAGCTCCTTTTCTTAATCTAG 58.575 37.037 0.00 0.00 36.20 2.43
4531 14213 8.319057 TGGATGTAGCTCCTTTTCTTAATCTA 57.681 34.615 0.00 0.00 36.20 1.98
4532 14214 7.200434 TGGATGTAGCTCCTTTTCTTAATCT 57.800 36.000 0.00 0.00 36.20 2.40
4533 14215 7.500559 ACATGGATGTAGCTCCTTTTCTTAATC 59.499 37.037 0.00 0.00 39.68 1.75
4534 14216 7.349598 ACATGGATGTAGCTCCTTTTCTTAAT 58.650 34.615 0.00 0.00 39.68 1.40
4535 14217 6.721318 ACATGGATGTAGCTCCTTTTCTTAA 58.279 36.000 0.00 0.00 39.68 1.85
4536 14218 6.313519 ACATGGATGTAGCTCCTTTTCTTA 57.686 37.500 0.00 0.00 39.68 2.10
4537 14219 5.184892 ACATGGATGTAGCTCCTTTTCTT 57.815 39.130 0.00 0.00 39.68 2.52
4538 14220 4.851639 ACATGGATGTAGCTCCTTTTCT 57.148 40.909 0.00 0.00 39.68 2.52
4539 14221 5.904362 AAACATGGATGTAGCTCCTTTTC 57.096 39.130 0.00 0.00 40.80 2.29
4540 14222 6.670695 AAAAACATGGATGTAGCTCCTTTT 57.329 33.333 0.00 0.00 40.80 2.27
4541 14223 7.615365 TGATAAAAACATGGATGTAGCTCCTTT 59.385 33.333 0.00 0.00 40.80 3.11
4542 14224 7.067494 GTGATAAAAACATGGATGTAGCTCCTT 59.933 37.037 0.00 0.00 40.80 3.36
4543 14225 6.543831 GTGATAAAAACATGGATGTAGCTCCT 59.456 38.462 0.00 0.00 40.80 3.69
4544 14226 6.543831 AGTGATAAAAACATGGATGTAGCTCC 59.456 38.462 0.00 0.00 40.80 4.70
4545 14227 7.559590 AGTGATAAAAACATGGATGTAGCTC 57.440 36.000 0.00 0.00 40.80 4.09
4574 14256 4.625607 TTTGCCCCCGTTTCAAAAATAT 57.374 36.364 0.00 0.00 0.00 1.28
4575 14257 4.202367 ACATTTGCCCCCGTTTCAAAAATA 60.202 37.500 0.00 0.00 34.00 1.40
4576 14258 3.145286 CATTTGCCCCCGTTTCAAAAAT 58.855 40.909 0.00 0.00 34.00 1.82
4632 14314 0.463116 AAACAAGTCAACGACCGGCT 60.463 50.000 0.00 0.00 32.18 5.52
4645 14327 4.280677 TCCTAACATGAAGCCCAAAACAAG 59.719 41.667 0.00 0.00 0.00 3.16
4831 14522 3.084039 GGCATGTCACTGAAGATGGAAA 58.916 45.455 0.00 0.00 0.00 3.13
4853 14544 2.821969 GTTTGGTTCAGACATGGCATCT 59.178 45.455 0.00 0.00 0.00 2.90
4861 14552 5.818336 TGTCGATTTAAGTTTGGTTCAGACA 59.182 36.000 0.00 0.00 0.00 3.41
4924 14616 2.912295 TGTCCAGATCCCTGAAACATGA 59.088 45.455 0.00 0.00 43.02 3.07
5174 15158 7.830940 TGTGTTAAGACAGTTCGTTTCTAAA 57.169 32.000 0.45 0.00 36.20 1.85
5202 15186 5.636123 TGGTGTTTGTGGGTGTAGAAATAT 58.364 37.500 0.00 0.00 0.00 1.28
5263 15247 1.616374 TCTCATGTCGCTGGTGTAACA 59.384 47.619 0.00 0.00 39.98 2.41
5347 15331 6.770785 AGCCAAAACTTTCTGTGAACTACATA 59.229 34.615 0.00 0.00 38.92 2.29
5369 15353 3.391626 ACCTTTACTCCTATTAGGCAGCC 59.608 47.826 1.84 1.84 34.61 4.85
5385 15369 7.857456 TGATGCTTCTTAATGGAGTACCTTTA 58.143 34.615 0.88 0.00 35.58 1.85
5399 15383 8.647256 TCTCTAGATCATCATGATGCTTCTTA 57.353 34.615 29.88 21.90 37.20 2.10
5486 15470 5.888724 TGGTTTGTTCACTTATTTCAGTCCA 59.111 36.000 0.00 0.00 0.00 4.02
5491 15475 8.617809 GTTCTAGTGGTTTGTTCACTTATTTCA 58.382 33.333 1.99 0.00 42.17 2.69
5492 15476 8.617809 TGTTCTAGTGGTTTGTTCACTTATTTC 58.382 33.333 1.99 0.00 42.17 2.17
5686 15786 1.086067 ATGAACAGCTCGCCACATCG 61.086 55.000 0.00 0.00 0.00 3.84
5793 15895 1.664302 GCTGCTGCTTTTCTCCGAAAC 60.664 52.381 8.53 0.00 36.03 2.78
5973 16085 1.260544 GGGATGGCTCTGCTGTTTTT 58.739 50.000 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.