Multiple sequence alignment - TraesCS2D01G272800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G272800 chr2D 100.000 3581 0 0 1 3581 338332800 338329220 0.000000e+00 6613.0
1 TraesCS2D01G272800 chr2D 95.556 90 3 1 3 92 338337426 338337338 3.730000e-30 143.0
2 TraesCS2D01G272800 chr2A 91.177 3049 167 52 585 3581 448295296 448292298 0.000000e+00 4047.0
3 TraesCS2D01G272800 chr2A 95.708 233 8 2 369 600 448295826 448295595 1.210000e-99 374.0
4 TraesCS2D01G272800 chr3B 94.959 1111 47 4 1610 2711 224957070 224955960 0.000000e+00 1733.0
5 TraesCS2D01G272800 chr3B 94.373 853 24 13 795 1629 224961247 224960401 0.000000e+00 1288.0
6 TraesCS2D01G272800 chr3B 94.286 350 17 2 452 798 224961945 224961596 1.890000e-147 532.0
7 TraesCS2D01G272800 chr3B 90.289 381 30 6 2991 3367 224954671 224954294 3.210000e-135 492.0
8 TraesCS2D01G272800 chr4A 85.750 1600 205 17 1004 2581 710695531 710693933 0.000000e+00 1670.0
9 TraesCS2D01G272800 chr4A 89.463 968 97 3 1624 2588 710676695 710675730 0.000000e+00 1218.0
10 TraesCS2D01G272800 chr4A 88.469 529 61 0 1004 1532 710284829 710284301 1.080000e-179 640.0
11 TraesCS2D01G272800 chr4A 76.923 169 29 9 2900 3060 647563255 647563089 1.770000e-13 87.9
12 TraesCS2D01G272800 chr7A 84.673 1605 215 20 1001 2588 27604636 27606226 0.000000e+00 1572.0
13 TraesCS2D01G272800 chr7A 89.669 968 97 1 1624 2588 26977641 26976674 0.000000e+00 1230.0
14 TraesCS2D01G272800 chr7A 88.326 968 110 1 1624 2588 27032265 27031298 0.000000e+00 1158.0
15 TraesCS2D01G272800 chr7A 87.922 977 113 3 1616 2587 26823240 26822264 0.000000e+00 1146.0
16 TraesCS2D01G272800 chr7A 90.769 520 48 0 1016 1535 27032938 27032419 0.000000e+00 695.0
17 TraesCS2D01G272800 chr7A 83.537 735 93 19 820 1535 26824150 26823425 0.000000e+00 662.0
18 TraesCS2D01G272800 chr7A 96.739 92 3 0 1 92 1265696 1265787 1.720000e-33 154.0
19 TraesCS2D01G272800 chr7A 93.684 95 6 0 1 95 1272437 1272531 3.730000e-30 143.0
20 TraesCS2D01G272800 chr7D 89.360 968 100 1 1624 2588 26559472 26558505 0.000000e+00 1214.0
21 TraesCS2D01G272800 chr7D 88.163 980 111 3 1613 2587 25898033 25897054 0.000000e+00 1162.0
22 TraesCS2D01G272800 chr7D 87.691 983 114 5 1612 2588 26565842 26564861 0.000000e+00 1138.0
23 TraesCS2D01G272800 chr7D 89.346 535 57 0 1001 1535 26566509 26565975 0.000000e+00 673.0
24 TraesCS2D01G272800 chr7D 87.119 590 66 6 953 1532 25898730 25898141 0.000000e+00 660.0
25 TraesCS2D01G272800 chr7D 79.848 263 34 10 2903 3156 619198660 619198408 1.320000e-39 174.0
26 TraesCS2D01G272800 chr7D 76.961 204 38 9 2815 3013 178489646 178489447 1.360000e-19 108.0
27 TraesCS2D01G272800 chr7B 80.315 254 31 11 2908 3156 714754246 714754007 1.320000e-39 174.0
28 TraesCS2D01G272800 chr7B 78.378 259 41 9 2903 3156 714738701 714738453 1.720000e-33 154.0
29 TraesCS2D01G272800 chr6A 95.652 92 4 0 1 92 155028207 155028116 8.010000e-32 148.0
30 TraesCS2D01G272800 chr6B 79.487 117 20 4 2900 3013 517441437 517441552 2.960000e-11 80.5
31 TraesCS2D01G272800 chr2B 74.419 215 42 12 2853 3060 621200474 621200682 2.960000e-11 80.5
32 TraesCS2D01G272800 chr4D 90.909 44 4 0 325 368 497148764 497148721 3.860000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G272800 chr2D 338329220 338332800 3580 True 6613.00 6613 100.00000 1 3581 1 chr2D.!!$R1 3580
1 TraesCS2D01G272800 chr2A 448292298 448295826 3528 True 2210.50 4047 93.44250 369 3581 2 chr2A.!!$R1 3212
2 TraesCS2D01G272800 chr3B 224954294 224961945 7651 True 1011.25 1733 93.47675 452 3367 4 chr3B.!!$R1 2915
3 TraesCS2D01G272800 chr4A 710693933 710695531 1598 True 1670.00 1670 85.75000 1004 2581 1 chr4A.!!$R4 1577
4 TraesCS2D01G272800 chr4A 710675730 710676695 965 True 1218.00 1218 89.46300 1624 2588 1 chr4A.!!$R3 964
5 TraesCS2D01G272800 chr4A 710284301 710284829 528 True 640.00 640 88.46900 1004 1532 1 chr4A.!!$R2 528
6 TraesCS2D01G272800 chr7A 27604636 27606226 1590 False 1572.00 1572 84.67300 1001 2588 1 chr7A.!!$F3 1587
7 TraesCS2D01G272800 chr7A 26976674 26977641 967 True 1230.00 1230 89.66900 1624 2588 1 chr7A.!!$R1 964
8 TraesCS2D01G272800 chr7A 27031298 27032938 1640 True 926.50 1158 89.54750 1016 2588 2 chr7A.!!$R3 1572
9 TraesCS2D01G272800 chr7A 26822264 26824150 1886 True 904.00 1146 85.72950 820 2587 2 chr7A.!!$R2 1767
10 TraesCS2D01G272800 chr7D 26558505 26559472 967 True 1214.00 1214 89.36000 1624 2588 1 chr7D.!!$R1 964
11 TraesCS2D01G272800 chr7D 25897054 25898730 1676 True 911.00 1162 87.64100 953 2587 2 chr7D.!!$R4 1634
12 TraesCS2D01G272800 chr7D 26564861 26566509 1648 True 905.50 1138 88.51850 1001 2588 2 chr7D.!!$R5 1587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.031178 CCTGCTGGTGCTTTGACAAC 59.969 55.0 0.51 0.0 40.48 3.32 F
958 1640 0.035343 TGGTGACCGAGTCGAGAGAT 60.035 55.0 15.64 0.0 45.19 2.75 F
1318 2010 0.605589 CAGGTTCAAGGAGCTCGTCT 59.394 55.0 9.78 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 5847 0.456824 CAGTCGATGGTCGTGTCCAG 60.457 60.000 0.0 0.0 41.35 3.86 R
2115 6290 1.022451 GCCGCACGTTCCATAGGAAA 61.022 55.000 0.0 0.0 43.86 3.13 R
2804 8091 1.622811 GGCCTCCATGATCTCGATCTT 59.377 52.381 0.0 0.0 38.60 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.871125 GGATCCTAACAATCAATCTAACTAGGA 58.129 37.037 3.84 0.00 38.37 2.94
29 30 9.886132 TCCTAACAATCAATCTAACTAGGAAAC 57.114 33.333 0.00 0.00 32.64 2.78
34 35 9.751542 ACAATCAATCTAACTAGGAAACTATCG 57.248 33.333 0.00 0.00 43.39 2.92
35 36 9.751542 CAATCAATCTAACTAGGAAACTATCGT 57.248 33.333 0.00 0.00 43.39 3.73
38 39 8.566260 TCAATCTAACTAGGAAACTATCGTAGC 58.434 37.037 0.00 0.00 45.99 3.58
39 40 8.569641 CAATCTAACTAGGAAACTATCGTAGCT 58.430 37.037 0.00 0.00 45.99 3.32
40 41 9.790344 AATCTAACTAGGAAACTATCGTAGCTA 57.210 33.333 0.00 0.00 45.99 3.32
41 42 9.790344 ATCTAACTAGGAAACTATCGTAGCTAA 57.210 33.333 0.00 0.00 45.99 3.09
42 43 9.790344 TCTAACTAGGAAACTATCGTAGCTAAT 57.210 33.333 0.00 0.00 45.99 1.73
44 45 8.694581 AACTAGGAAACTATCGTAGCTAATCT 57.305 34.615 0.00 0.00 45.99 2.40
45 46 8.101654 ACTAGGAAACTATCGTAGCTAATCTG 57.898 38.462 0.00 0.00 45.99 2.90
46 47 6.963083 AGGAAACTATCGTAGCTAATCTGT 57.037 37.500 0.00 0.00 40.61 3.41
47 48 6.972722 AGGAAACTATCGTAGCTAATCTGTC 58.027 40.000 0.00 0.00 40.61 3.51
48 49 6.546403 AGGAAACTATCGTAGCTAATCTGTCA 59.454 38.462 0.00 0.00 40.61 3.58
49 50 6.858993 GGAAACTATCGTAGCTAATCTGTCAG 59.141 42.308 0.00 0.00 0.00 3.51
50 51 7.255173 GGAAACTATCGTAGCTAATCTGTCAGA 60.255 40.741 4.68 4.68 0.00 3.27
51 52 7.753309 AACTATCGTAGCTAATCTGTCAGAT 57.247 36.000 9.68 9.68 36.28 2.90
52 53 8.850007 AACTATCGTAGCTAATCTGTCAGATA 57.150 34.615 15.77 4.22 32.89 1.98
53 54 9.456147 AACTATCGTAGCTAATCTGTCAGATAT 57.544 33.333 15.77 8.80 32.89 1.63
99 100 9.687210 TGATGAATATATATTAATACGTCGGCC 57.313 33.333 7.97 0.00 0.00 6.13
100 101 9.909644 GATGAATATATATTAATACGTCGGCCT 57.090 33.333 7.97 0.00 0.00 5.19
101 102 9.692749 ATGAATATATATTAATACGTCGGCCTG 57.307 33.333 7.97 0.00 0.00 4.85
102 103 7.650504 TGAATATATATTAATACGTCGGCCTGC 59.349 37.037 7.97 0.00 0.00 4.85
103 104 3.955650 ATATTAATACGTCGGCCTGCT 57.044 42.857 0.00 0.00 0.00 4.24
104 105 1.865865 ATTAATACGTCGGCCTGCTG 58.134 50.000 0.00 0.00 0.00 4.41
105 106 0.179094 TTAATACGTCGGCCTGCTGG 60.179 55.000 5.03 5.03 0.00 4.85
106 107 1.324740 TAATACGTCGGCCTGCTGGT 61.325 55.000 11.69 0.00 35.27 4.00
107 108 2.852495 AATACGTCGGCCTGCTGGTG 62.852 60.000 11.69 4.68 35.27 4.17
111 112 4.269523 TCGGCCTGCTGGTGCTTT 62.270 61.111 11.69 0.00 40.48 3.51
112 113 4.047059 CGGCCTGCTGGTGCTTTG 62.047 66.667 11.69 0.00 40.48 2.77
113 114 2.598394 GGCCTGCTGGTGCTTTGA 60.598 61.111 11.69 0.00 40.48 2.69
114 115 2.647297 GCCTGCTGGTGCTTTGAC 59.353 61.111 11.69 0.00 40.48 3.18
115 116 2.195567 GCCTGCTGGTGCTTTGACA 61.196 57.895 11.69 0.00 40.48 3.58
116 117 1.737355 GCCTGCTGGTGCTTTGACAA 61.737 55.000 11.69 0.00 40.48 3.18
117 118 0.031178 CCTGCTGGTGCTTTGACAAC 59.969 55.000 0.51 0.00 40.48 3.32
118 119 0.317269 CTGCTGGTGCTTTGACAACG 60.317 55.000 0.00 0.00 40.48 4.10
119 120 0.746204 TGCTGGTGCTTTGACAACGA 60.746 50.000 0.00 0.00 40.48 3.85
120 121 0.317020 GCTGGTGCTTTGACAACGAC 60.317 55.000 0.00 0.00 36.03 4.34
121 122 0.042188 CTGGTGCTTTGACAACGACG 60.042 55.000 0.00 0.00 0.00 5.12
122 123 1.278637 GGTGCTTTGACAACGACGG 59.721 57.895 0.00 0.00 0.00 4.79
123 124 1.368850 GTGCTTTGACAACGACGGC 60.369 57.895 0.00 0.00 0.00 5.68
124 125 2.251371 GCTTTGACAACGACGGCC 59.749 61.111 0.00 0.00 0.00 6.13
125 126 2.251642 GCTTTGACAACGACGGCCT 61.252 57.895 0.00 0.00 0.00 5.19
126 127 0.947180 GCTTTGACAACGACGGCCTA 60.947 55.000 0.00 0.00 0.00 3.93
127 128 1.068474 CTTTGACAACGACGGCCTAG 58.932 55.000 0.00 0.00 0.00 3.02
128 129 0.320073 TTTGACAACGACGGCCTAGG 60.320 55.000 3.67 3.67 0.00 3.02
129 130 2.162338 TTGACAACGACGGCCTAGGG 62.162 60.000 11.72 0.00 0.00 3.53
156 157 2.856089 GTCGCGACCTATGAAGACG 58.144 57.895 28.61 0.00 0.00 4.18
157 158 0.376152 GTCGCGACCTATGAAGACGA 59.624 55.000 28.61 0.00 0.00 4.20
158 159 1.089112 TCGCGACCTATGAAGACGAA 58.911 50.000 3.71 0.00 0.00 3.85
159 160 1.063616 TCGCGACCTATGAAGACGAAG 59.936 52.381 3.71 0.00 0.00 3.79
160 161 1.841450 GCGACCTATGAAGACGAAGG 58.159 55.000 0.00 0.00 35.14 3.46
161 162 1.536284 GCGACCTATGAAGACGAAGGG 60.536 57.143 0.00 0.00 33.16 3.95
162 163 1.067212 CGACCTATGAAGACGAAGGGG 59.933 57.143 0.00 0.00 33.16 4.79
163 164 2.108970 GACCTATGAAGACGAAGGGGT 58.891 52.381 0.00 0.00 33.16 4.95
164 165 1.831736 ACCTATGAAGACGAAGGGGTG 59.168 52.381 0.00 0.00 33.16 4.61
165 166 1.139058 CCTATGAAGACGAAGGGGTGG 59.861 57.143 0.00 0.00 0.00 4.61
166 167 2.108168 CTATGAAGACGAAGGGGTGGA 58.892 52.381 0.00 0.00 0.00 4.02
167 168 0.905357 ATGAAGACGAAGGGGTGGAG 59.095 55.000 0.00 0.00 0.00 3.86
168 169 1.192146 TGAAGACGAAGGGGTGGAGG 61.192 60.000 0.00 0.00 0.00 4.30
169 170 1.152096 AAGACGAAGGGGTGGAGGT 60.152 57.895 0.00 0.00 0.00 3.85
170 171 1.192803 AAGACGAAGGGGTGGAGGTC 61.193 60.000 0.00 0.00 0.00 3.85
171 172 2.606826 ACGAAGGGGTGGAGGTCC 60.607 66.667 0.00 0.00 0.00 4.46
172 173 3.771160 CGAAGGGGTGGAGGTCCG 61.771 72.222 0.00 0.00 39.43 4.79
173 174 2.606826 GAAGGGGTGGAGGTCCGT 60.607 66.667 0.00 0.00 39.43 4.69
174 175 2.928396 AAGGGGTGGAGGTCCGTG 60.928 66.667 0.00 0.00 39.43 4.94
177 178 4.016706 GGGTGGAGGTCCGTGGTG 62.017 72.222 0.00 0.00 39.43 4.17
178 179 4.016706 GGTGGAGGTCCGTGGTGG 62.017 72.222 0.00 0.00 39.43 4.61
179 180 3.239253 GTGGAGGTCCGTGGTGGT 61.239 66.667 0.00 0.00 39.43 4.16
180 181 2.920912 TGGAGGTCCGTGGTGGTC 60.921 66.667 0.00 0.00 39.43 4.02
181 182 3.703127 GGAGGTCCGTGGTGGTCC 61.703 72.222 0.00 0.00 45.45 4.46
184 185 3.387947 GGTCCGTGGTGGTCCGAT 61.388 66.667 0.00 0.00 36.17 4.18
185 186 2.125673 GTCCGTGGTGGTCCGATG 60.126 66.667 0.00 0.00 39.52 3.84
186 187 2.283316 TCCGTGGTGGTCCGATGA 60.283 61.111 0.00 0.00 39.52 2.92
187 188 2.184322 CCGTGGTGGTCCGATGAG 59.816 66.667 0.00 0.00 36.30 2.90
188 189 2.646175 CCGTGGTGGTCCGATGAGT 61.646 63.158 0.00 0.00 36.30 3.41
189 190 1.446099 CGTGGTGGTCCGATGAGTG 60.446 63.158 0.00 0.00 36.30 3.51
190 191 1.873270 CGTGGTGGTCCGATGAGTGA 61.873 60.000 0.00 0.00 36.30 3.41
191 192 0.389948 GTGGTGGTCCGATGAGTGAC 60.390 60.000 0.00 0.00 36.30 3.67
192 193 0.830023 TGGTGGTCCGATGAGTGACA 60.830 55.000 0.00 0.00 36.30 3.58
193 194 0.320374 GGTGGTCCGATGAGTGACAA 59.680 55.000 0.00 0.00 33.09 3.18
194 195 1.673033 GGTGGTCCGATGAGTGACAAG 60.673 57.143 0.00 0.00 33.09 3.16
195 196 1.000955 GTGGTCCGATGAGTGACAAGT 59.999 52.381 0.00 0.00 33.09 3.16
196 197 1.000843 TGGTCCGATGAGTGACAAGTG 59.999 52.381 0.00 0.00 33.09 3.16
197 198 1.673033 GGTCCGATGAGTGACAAGTGG 60.673 57.143 0.00 0.00 33.09 4.00
198 199 1.272490 GTCCGATGAGTGACAAGTGGA 59.728 52.381 0.00 0.00 0.00 4.02
199 200 1.546029 TCCGATGAGTGACAAGTGGAG 59.454 52.381 0.00 0.00 0.00 3.86
200 201 1.546029 CCGATGAGTGACAAGTGGAGA 59.454 52.381 0.00 0.00 0.00 3.71
201 202 2.416566 CCGATGAGTGACAAGTGGAGAG 60.417 54.545 0.00 0.00 0.00 3.20
202 203 2.230025 CGATGAGTGACAAGTGGAGAGT 59.770 50.000 0.00 0.00 0.00 3.24
203 204 3.583806 GATGAGTGACAAGTGGAGAGTG 58.416 50.000 0.00 0.00 0.00 3.51
204 205 2.666317 TGAGTGACAAGTGGAGAGTGA 58.334 47.619 0.00 0.00 0.00 3.41
205 206 2.625314 TGAGTGACAAGTGGAGAGTGAG 59.375 50.000 0.00 0.00 0.00 3.51
206 207 1.967066 AGTGACAAGTGGAGAGTGAGG 59.033 52.381 0.00 0.00 0.00 3.86
207 208 1.001406 GTGACAAGTGGAGAGTGAGGG 59.999 57.143 0.00 0.00 0.00 4.30
208 209 0.610687 GACAAGTGGAGAGTGAGGGG 59.389 60.000 0.00 0.00 0.00 4.79
209 210 0.191064 ACAAGTGGAGAGTGAGGGGA 59.809 55.000 0.00 0.00 0.00 4.81
210 211 0.901124 CAAGTGGAGAGTGAGGGGAG 59.099 60.000 0.00 0.00 0.00 4.30
211 212 0.252467 AAGTGGAGAGTGAGGGGAGG 60.252 60.000 0.00 0.00 0.00 4.30
212 213 1.149782 AGTGGAGAGTGAGGGGAGGA 61.150 60.000 0.00 0.00 0.00 3.71
213 214 0.686112 GTGGAGAGTGAGGGGAGGAG 60.686 65.000 0.00 0.00 0.00 3.69
214 215 1.760480 GGAGAGTGAGGGGAGGAGC 60.760 68.421 0.00 0.00 0.00 4.70
215 216 2.043450 AGAGTGAGGGGAGGAGCG 60.043 66.667 0.00 0.00 0.00 5.03
216 217 3.151022 GAGTGAGGGGAGGAGCGG 61.151 72.222 0.00 0.00 0.00 5.52
217 218 4.787280 AGTGAGGGGAGGAGCGGG 62.787 72.222 0.00 0.00 0.00 6.13
240 241 4.785512 CGCCGAGCTCGCAACTCT 62.786 66.667 30.49 0.00 38.18 3.24
241 242 3.184683 GCCGAGCTCGCAACTCTG 61.185 66.667 30.49 15.69 38.18 3.35
242 243 2.568612 CCGAGCTCGCAACTCTGA 59.431 61.111 30.49 0.00 38.18 3.27
243 244 1.140589 CCGAGCTCGCAACTCTGAT 59.859 57.895 30.49 0.00 38.18 2.90
244 245 1.144565 CCGAGCTCGCAACTCTGATG 61.145 60.000 30.49 8.92 38.18 3.07
245 246 1.750572 CGAGCTCGCAACTCTGATGC 61.751 60.000 25.07 0.00 40.41 3.91
250 251 3.805267 GCAACTCTGATGCGAGGG 58.195 61.111 0.00 0.00 35.33 4.30
251 252 1.219124 GCAACTCTGATGCGAGGGA 59.781 57.895 0.00 0.00 35.33 4.20
252 253 1.086634 GCAACTCTGATGCGAGGGAC 61.087 60.000 0.00 0.00 35.33 4.46
253 254 0.247460 CAACTCTGATGCGAGGGACA 59.753 55.000 0.00 0.00 35.33 4.02
254 255 0.534412 AACTCTGATGCGAGGGACAG 59.466 55.000 0.00 0.00 35.33 3.51
255 256 1.326213 ACTCTGATGCGAGGGACAGG 61.326 60.000 0.00 0.00 35.33 4.00
256 257 2.025767 CTCTGATGCGAGGGACAGGG 62.026 65.000 0.00 0.00 0.00 4.45
257 258 2.038813 TGATGCGAGGGACAGGGA 59.961 61.111 0.00 0.00 0.00 4.20
258 259 1.612146 TGATGCGAGGGACAGGGAA 60.612 57.895 0.00 0.00 0.00 3.97
259 260 1.144936 GATGCGAGGGACAGGGAAG 59.855 63.158 0.00 0.00 0.00 3.46
260 261 1.306141 ATGCGAGGGACAGGGAAGA 60.306 57.895 0.00 0.00 0.00 2.87
261 262 1.617947 ATGCGAGGGACAGGGAAGAC 61.618 60.000 0.00 0.00 0.00 3.01
262 263 2.885861 CGAGGGACAGGGAAGACG 59.114 66.667 0.00 0.00 0.00 4.18
263 264 2.579738 GAGGGACAGGGAAGACGC 59.420 66.667 0.00 0.00 0.00 5.19
264 265 3.358076 GAGGGACAGGGAAGACGCG 62.358 68.421 3.53 3.53 0.00 6.01
265 266 3.379445 GGGACAGGGAAGACGCGA 61.379 66.667 15.93 0.00 0.00 5.87
266 267 2.182030 GGACAGGGAAGACGCGAG 59.818 66.667 15.93 0.00 0.00 5.03
267 268 2.507324 GACAGGGAAGACGCGAGC 60.507 66.667 15.93 3.96 0.00 5.03
268 269 3.282745 GACAGGGAAGACGCGAGCA 62.283 63.158 15.93 0.00 0.00 4.26
269 270 2.507992 CAGGGAAGACGCGAGCAG 60.508 66.667 15.93 0.00 0.00 4.24
270 271 3.764466 AGGGAAGACGCGAGCAGG 61.764 66.667 15.93 0.00 0.00 4.85
271 272 3.760035 GGGAAGACGCGAGCAGGA 61.760 66.667 15.93 0.00 0.00 3.86
272 273 2.261671 GGAAGACGCGAGCAGGAA 59.738 61.111 15.93 0.00 0.00 3.36
273 274 1.807573 GGAAGACGCGAGCAGGAAG 60.808 63.158 15.93 0.00 0.00 3.46
274 275 1.213013 GAAGACGCGAGCAGGAAGA 59.787 57.895 15.93 0.00 0.00 2.87
275 276 1.073768 GAAGACGCGAGCAGGAAGAC 61.074 60.000 15.93 0.00 0.00 3.01
276 277 1.528292 AAGACGCGAGCAGGAAGACT 61.528 55.000 15.93 0.00 0.00 3.24
277 278 1.080434 GACGCGAGCAGGAAGACTT 60.080 57.895 15.93 0.00 0.00 3.01
278 279 1.347817 GACGCGAGCAGGAAGACTTG 61.348 60.000 15.93 0.00 0.00 3.16
279 280 1.373497 CGCGAGCAGGAAGACTTGT 60.373 57.895 0.00 0.00 0.00 3.16
280 281 1.347817 CGCGAGCAGGAAGACTTGTC 61.348 60.000 0.00 0.00 0.00 3.18
281 282 0.037790 GCGAGCAGGAAGACTTGTCT 60.038 55.000 0.00 0.00 0.00 3.41
282 283 1.989430 CGAGCAGGAAGACTTGTCTC 58.011 55.000 3.58 0.00 0.00 3.36
283 284 1.730772 CGAGCAGGAAGACTTGTCTCG 60.731 57.143 3.58 1.89 40.14 4.04
284 285 0.605589 AGCAGGAAGACTTGTCTCGG 59.394 55.000 3.58 0.00 0.00 4.63
285 286 0.390472 GCAGGAAGACTTGTCTCGGG 60.390 60.000 3.58 0.00 0.00 5.14
286 287 0.247736 CAGGAAGACTTGTCTCGGGG 59.752 60.000 3.58 0.00 0.00 5.73
287 288 0.114560 AGGAAGACTTGTCTCGGGGA 59.885 55.000 3.58 0.00 0.00 4.81
288 289 1.196012 GGAAGACTTGTCTCGGGGAT 58.804 55.000 3.58 0.00 0.00 3.85
289 290 2.024273 AGGAAGACTTGTCTCGGGGATA 60.024 50.000 3.58 0.00 0.00 2.59
290 291 2.764572 GGAAGACTTGTCTCGGGGATAA 59.235 50.000 3.58 0.00 0.00 1.75
291 292 3.181474 GGAAGACTTGTCTCGGGGATAAG 60.181 52.174 12.25 12.25 45.01 1.73
292 293 3.383698 AGACTTGTCTCGGGGATAAGA 57.616 47.619 19.62 0.00 43.10 2.10
293 294 3.917300 AGACTTGTCTCGGGGATAAGAT 58.083 45.455 19.62 6.27 43.10 2.40
294 295 3.892588 AGACTTGTCTCGGGGATAAGATC 59.107 47.826 19.62 12.97 43.10 2.75
295 296 3.892588 GACTTGTCTCGGGGATAAGATCT 59.107 47.826 19.62 0.00 43.10 2.75
296 297 3.639094 ACTTGTCTCGGGGATAAGATCTG 59.361 47.826 19.62 0.00 43.10 2.90
297 298 3.595190 TGTCTCGGGGATAAGATCTGA 57.405 47.619 0.00 0.00 0.00 3.27
298 299 3.910989 TGTCTCGGGGATAAGATCTGAA 58.089 45.455 0.00 0.00 0.00 3.02
299 300 3.637229 TGTCTCGGGGATAAGATCTGAAC 59.363 47.826 0.00 0.00 0.00 3.18
300 301 3.637229 GTCTCGGGGATAAGATCTGAACA 59.363 47.826 0.00 0.00 0.00 3.18
301 302 3.891977 TCTCGGGGATAAGATCTGAACAG 59.108 47.826 0.00 0.00 0.00 3.16
302 303 2.365617 TCGGGGATAAGATCTGAACAGC 59.634 50.000 0.00 0.00 0.00 4.40
303 304 2.366916 CGGGGATAAGATCTGAACAGCT 59.633 50.000 0.00 0.00 0.00 4.24
304 305 3.737850 GGGGATAAGATCTGAACAGCTG 58.262 50.000 13.48 13.48 0.00 4.24
305 306 3.389329 GGGGATAAGATCTGAACAGCTGA 59.611 47.826 23.35 0.00 0.00 4.26
306 307 4.376146 GGGATAAGATCTGAACAGCTGAC 58.624 47.826 23.35 14.31 0.00 3.51
307 308 4.047822 GGATAAGATCTGAACAGCTGACG 58.952 47.826 23.35 10.18 0.00 4.35
308 309 2.376808 AAGATCTGAACAGCTGACGG 57.623 50.000 23.35 17.99 0.00 4.79
309 310 1.261480 AGATCTGAACAGCTGACGGT 58.739 50.000 23.35 9.41 0.00 4.83
310 311 1.067283 AGATCTGAACAGCTGACGGTG 60.067 52.381 23.35 6.44 44.04 4.94
311 312 0.671781 ATCTGAACAGCTGACGGTGC 60.672 55.000 23.35 0.00 42.26 5.01
312 313 2.661537 TGAACAGCTGACGGTGCG 60.662 61.111 23.35 0.00 42.26 5.34
313 314 4.077188 GAACAGCTGACGGTGCGC 62.077 66.667 23.35 0.00 42.26 6.09
314 315 4.609018 AACAGCTGACGGTGCGCT 62.609 61.111 23.35 0.00 42.26 5.92
315 316 3.220999 AACAGCTGACGGTGCGCTA 62.221 57.895 23.35 0.00 42.26 4.26
316 317 2.432456 CAGCTGACGGTGCGCTAA 60.432 61.111 8.42 0.00 35.28 3.09
317 318 1.811266 CAGCTGACGGTGCGCTAAT 60.811 57.895 8.42 0.00 35.28 1.73
318 319 1.519455 AGCTGACGGTGCGCTAATC 60.519 57.895 9.73 1.47 35.28 1.75
319 320 2.860628 GCTGACGGTGCGCTAATCG 61.861 63.158 9.73 3.34 42.12 3.34
329 330 3.470567 GCTAATCGCGATCGGCCG 61.471 66.667 23.92 22.12 38.94 6.13
330 331 2.254350 CTAATCGCGATCGGCCGA 59.746 61.111 33.12 33.12 38.94 5.54
331 332 1.371267 CTAATCGCGATCGGCCGAA 60.371 57.895 34.66 16.55 38.94 4.30
332 333 0.937699 CTAATCGCGATCGGCCGAAA 60.938 55.000 34.66 11.34 38.94 3.46
333 334 1.210545 TAATCGCGATCGGCCGAAAC 61.211 55.000 34.66 26.32 38.94 2.78
334 335 2.901051 AATCGCGATCGGCCGAAACT 62.901 55.000 34.66 17.17 38.94 2.66
335 336 2.901051 ATCGCGATCGGCCGAAACTT 62.901 55.000 34.66 16.72 38.94 2.66
336 337 2.736682 CGCGATCGGCCGAAACTTT 61.737 57.895 34.66 16.25 38.94 2.66
337 338 1.226018 GCGATCGGCCGAAACTTTG 60.226 57.895 34.66 20.40 34.80 2.77
338 339 1.423845 CGATCGGCCGAAACTTTGG 59.576 57.895 34.66 13.03 34.66 3.28
339 340 1.017177 CGATCGGCCGAAACTTTGGA 61.017 55.000 34.66 5.74 33.23 3.53
340 341 0.446616 GATCGGCCGAAACTTTGGAC 59.553 55.000 34.66 10.88 36.29 4.02
341 342 0.958876 ATCGGCCGAAACTTTGGACC 60.959 55.000 34.66 0.47 36.27 4.46
342 343 2.951458 GGCCGAAACTTTGGACCG 59.049 61.111 0.00 0.00 33.19 4.79
343 344 2.622962 GGCCGAAACTTTGGACCGG 61.623 63.158 0.00 0.00 42.74 5.28
344 345 2.951458 CCGAAACTTTGGACCGGC 59.049 61.111 0.00 0.00 33.23 6.13
345 346 2.554272 CGAAACTTTGGACCGGCG 59.446 61.111 0.00 0.00 0.00 6.46
346 347 2.254350 GAAACTTTGGACCGGCGC 59.746 61.111 0.00 0.00 0.00 6.53
347 348 3.588891 GAAACTTTGGACCGGCGCG 62.589 63.158 0.00 0.00 0.00 6.86
499 501 5.337652 CCCCCAAATACTTCGATATCTCTCC 60.338 48.000 0.34 0.00 0.00 3.71
579 581 4.514401 GACGGGGTTATCTTGACATTTCT 58.486 43.478 0.00 0.00 0.00 2.52
606 608 2.432444 CCGCCCTGATTTTTGTCAGTA 58.568 47.619 3.54 0.00 43.22 2.74
646 955 0.391130 ACAACACTCGTGCACACAGT 60.391 50.000 18.64 14.82 0.00 3.55
832 1493 3.795688 ACTGGAGATCCAACAATGTGT 57.204 42.857 2.65 0.00 46.97 3.72
950 1632 2.279918 GCAACGTGGTGACCGAGT 60.280 61.111 0.00 0.00 0.00 4.18
958 1640 0.035343 TGGTGACCGAGTCGAGAGAT 60.035 55.000 15.64 0.00 45.19 2.75
1034 1726 3.474570 GGGAGAGAGGCCGCACAT 61.475 66.667 9.88 0.00 0.00 3.21
1318 2010 0.605589 CAGGTTCAAGGAGCTCGTCT 59.394 55.000 9.78 0.00 0.00 4.18
1341 2033 4.821589 CTCAACGAGGAGGCCGGC 62.822 72.222 21.18 21.18 0.00 6.13
1601 2329 3.261643 TCTGTGTGTGTGCTTGGATAGAT 59.738 43.478 0.00 0.00 0.00 1.98
1672 5847 2.748605 CTCAGTTGAGCGATGGATACC 58.251 52.381 0.00 0.00 35.13 2.73
1704 5879 4.603946 GACTGGATACCGGCGGCC 62.604 72.222 28.71 20.15 32.02 6.13
2415 6595 2.360852 GGGGACGACGTGAGGAGA 60.361 66.667 4.58 0.00 0.00 3.71
2451 6631 0.692756 TGATACGGGAGGCCATGGAA 60.693 55.000 18.40 0.00 0.00 3.53
2463 6643 1.552254 GCCATGGAAGGGGAAAAAGGA 60.552 52.381 18.40 0.00 38.99 3.36
2540 6720 3.645660 TGGCGGAAGGTCCATGCA 61.646 61.111 0.00 0.00 35.91 3.96
2604 6784 2.299867 CAAGCTGGTAAATGGTTTGGCT 59.700 45.455 0.00 0.00 0.00 4.75
2610 6790 5.679638 GCTGGTAAATGGTTTGGCTATTCTG 60.680 44.000 0.00 0.00 0.00 3.02
2747 6948 0.968405 TTGGCCTCCTGCATGTTTTC 59.032 50.000 3.32 0.00 43.89 2.29
2749 6950 0.813821 GGCCTCCTGCATGTTTTCTC 59.186 55.000 0.00 0.00 43.89 2.87
2751 6952 2.356125 GGCCTCCTGCATGTTTTCTCTA 60.356 50.000 0.00 0.00 43.89 2.43
2752 6953 3.549794 GCCTCCTGCATGTTTTCTCTAT 58.450 45.455 0.00 0.00 40.77 1.98
2755 6956 5.374921 CCTCCTGCATGTTTTCTCTATGAT 58.625 41.667 0.00 0.00 0.00 2.45
2756 6957 5.826737 CCTCCTGCATGTTTTCTCTATGATT 59.173 40.000 0.00 0.00 0.00 2.57
2789 8076 5.642063 CCTTTTCTAACACCGCTCTATGAAA 59.358 40.000 0.00 0.00 0.00 2.69
2794 8081 6.561614 TCTAACACCGCTCTATGAAAAGTAG 58.438 40.000 0.00 0.00 0.00 2.57
2795 8082 3.522553 ACACCGCTCTATGAAAAGTAGC 58.477 45.455 0.00 0.00 0.00 3.58
2804 8091 6.095440 GCTCTATGAAAAGTAGCCCATTTTGA 59.905 38.462 0.00 0.00 0.00 2.69
2819 8107 5.048921 CCCATTTTGAAGATCGAGATCATGG 60.049 44.000 14.64 15.08 40.22 3.66
2824 8112 1.265236 AGATCGAGATCATGGAGGCC 58.735 55.000 14.64 0.00 40.22 5.19
2893 8182 9.445786 AATTTCTCAAAACAAATACTACACACG 57.554 29.630 0.00 0.00 0.00 4.49
2896 8185 8.373048 TCTCAAAACAAATACTACACACGAAT 57.627 30.769 0.00 0.00 0.00 3.34
2898 8187 9.741168 CTCAAAACAAATACTACACACGAATAG 57.259 33.333 0.00 0.00 0.00 1.73
2899 8188 9.478768 TCAAAACAAATACTACACACGAATAGA 57.521 29.630 0.00 0.00 0.00 1.98
2915 8204 7.987458 ACACGAATAGAAGGATGAAATGTGTAT 59.013 33.333 0.00 0.00 34.28 2.29
2958 8247 2.830772 TATGTCAAATTGCGAGCTGC 57.169 45.000 0.00 0.00 46.70 5.25
2997 8290 8.756486 TCATGGACTTTGATGATGAACAATAT 57.244 30.769 0.00 0.00 0.00 1.28
3014 8307 9.062524 TGAACAATATATATGCTAAAAAGCCGT 57.937 29.630 0.00 0.00 0.00 5.68
3017 8310 9.938280 ACAATATATATGCTAAAAAGCCGTAGA 57.062 29.630 0.00 0.00 0.00 2.59
3076 8370 7.692908 ACCTGAAAATGAAAATTTACACACG 57.307 32.000 0.00 0.00 0.00 4.49
3086 8380 8.990722 TGAAAATTTACACACGTGTACATTAC 57.009 30.769 22.90 15.17 42.34 1.89
3099 8393 7.818009 CGTGTACATTACGTCTCTGTATTAG 57.182 40.000 0.00 0.00 36.83 1.73
3100 8394 7.404985 CGTGTACATTACGTCTCTGTATTAGT 58.595 38.462 0.00 0.00 36.83 2.24
3102 8396 8.393366 GTGTACATTACGTCTCTGTATTAGTGA 58.607 37.037 0.00 0.00 0.00 3.41
3170 8467 6.593770 AGTTTCCAAATTTGAAACCAGAACAC 59.406 34.615 25.71 16.90 39.00 3.32
3203 8500 4.214119 CCTGATGTGCATAACTAAATCCCG 59.786 45.833 0.00 0.00 0.00 5.14
3227 8524 6.430451 GGTCATTATTGCACCTTTAGATTCG 58.570 40.000 0.00 0.00 0.00 3.34
3242 8539 4.280101 AGATTCGTGACATCTACTCGTG 57.720 45.455 0.00 0.00 0.00 4.35
3250 8547 3.057526 TGACATCTACTCGTGGACTTGTG 60.058 47.826 0.00 0.00 0.00 3.33
3260 8557 2.285083 GTGGACTTGTGCAGTGTGTTA 58.715 47.619 0.00 0.00 35.01 2.41
3301 8598 6.484643 TCCTTCATTTTCATAGTAGAGCATGC 59.515 38.462 10.51 10.51 0.00 4.06
3355 8655 7.751047 TTACAACTCGTATTAGATCAAGTGC 57.249 36.000 0.00 0.00 0.00 4.40
3373 8673 3.892581 GGTAAGCCAGCGCATGCC 61.893 66.667 13.15 4.99 44.31 4.40
3392 8692 4.739195 TGCCGAGCATTTTTATAACCAAC 58.261 39.130 0.00 0.00 31.71 3.77
3393 8693 4.218635 TGCCGAGCATTTTTATAACCAACA 59.781 37.500 0.00 0.00 31.71 3.33
3438 8738 9.403583 TGAAGTCTAAACAATACCTCTTTTGTT 57.596 29.630 0.00 0.00 45.39 2.83
3479 8779 1.390287 ACCCAGGGTCTCACCTAGTA 58.610 55.000 4.76 0.00 39.34 1.82
3483 8783 3.896272 CCCAGGGTCTCACCTAGTATTAC 59.104 52.174 0.00 0.00 39.34 1.89
3491 8791 5.049543 GTCTCACCTAGTATTACGTGGCTAG 60.050 48.000 0.00 4.59 0.00 3.42
3492 8792 4.785301 TCACCTAGTATTACGTGGCTAGT 58.215 43.478 0.00 0.00 31.58 2.57
3501 8801 6.707161 AGTATTACGTGGCTAGTCAACAAAAA 59.293 34.615 0.00 0.00 0.00 1.94
3506 8806 4.261405 CGTGGCTAGTCAACAAAAATCCAA 60.261 41.667 0.00 0.00 0.00 3.53
3508 8808 4.892934 TGGCTAGTCAACAAAAATCCAAGT 59.107 37.500 0.00 0.00 0.00 3.16
3510 8810 5.147162 GCTAGTCAACAAAAATCCAAGTCG 58.853 41.667 0.00 0.00 0.00 4.18
3512 8812 2.719046 GTCAACAAAAATCCAAGTCGCG 59.281 45.455 0.00 0.00 0.00 5.87
3515 8815 1.001815 ACAAAAATCCAAGTCGCGTGG 60.002 47.619 5.77 7.00 37.51 4.94
3529 8842 2.716828 CGTGGCGCAACGTCTAGTG 61.717 63.158 28.87 0.00 38.74 2.74
3535 8848 2.159881 GGCGCAACGTCTAGTGTTTTAG 60.160 50.000 10.83 0.00 0.00 1.85
3542 8855 6.214399 CAACGTCTAGTGTTTTAGTCCTCTT 58.786 40.000 0.00 0.00 0.00 2.85
3544 8857 5.162075 CGTCTAGTGTTTTAGTCCTCTTGG 58.838 45.833 0.00 0.00 0.00 3.61
3559 8872 1.019673 CTTGGCGATTCCATCAGTGG 58.980 55.000 0.00 0.00 46.04 4.00
3567 8880 3.372206 CGATTCCATCAGTGGTGAGTTTC 59.628 47.826 4.51 0.00 46.16 2.78
3572 8885 0.679505 TCAGTGGTGAGTTTCCCTCG 59.320 55.000 0.00 0.00 43.64 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.871125 TCCTAGTTAGATTGATTGTTAGGATCC 58.129 37.037 2.48 2.48 32.64 3.36
4 5 9.892130 AGTTTCCTAGTTAGATTGATTGTTAGG 57.108 33.333 0.00 0.00 0.00 2.69
8 9 9.751542 CGATAGTTTCCTAGTTAGATTGATTGT 57.248 33.333 0.00 0.00 0.00 2.71
25 26 8.293867 ATCTGACAGATTAGCTACGATAGTTTC 58.706 37.037 12.37 0.00 37.72 2.78
26 27 8.172352 ATCTGACAGATTAGCTACGATAGTTT 57.828 34.615 12.37 0.00 37.72 2.66
27 28 7.753309 ATCTGACAGATTAGCTACGATAGTT 57.247 36.000 12.37 0.00 37.72 2.24
73 74 9.687210 GGCCGACGTATTAATATATATTCATCA 57.313 33.333 11.28 0.00 0.00 3.07
74 75 9.909644 AGGCCGACGTATTAATATATATTCATC 57.090 33.333 11.28 0.00 0.00 2.92
75 76 9.692749 CAGGCCGACGTATTAATATATATTCAT 57.307 33.333 11.28 8.97 0.00 2.57
76 77 7.650504 GCAGGCCGACGTATTAATATATATTCA 59.349 37.037 11.28 1.52 0.00 2.57
77 78 7.866393 AGCAGGCCGACGTATTAATATATATTC 59.134 37.037 11.28 0.00 0.00 1.75
78 79 7.652105 CAGCAGGCCGACGTATTAATATATATT 59.348 37.037 12.51 12.51 0.00 1.28
79 80 7.145985 CAGCAGGCCGACGTATTAATATATAT 58.854 38.462 0.00 0.00 0.00 0.86
80 81 6.460537 CCAGCAGGCCGACGTATTAATATATA 60.461 42.308 0.00 0.00 0.00 0.86
81 82 5.348986 CAGCAGGCCGACGTATTAATATAT 58.651 41.667 0.00 0.00 0.00 0.86
82 83 4.381185 CCAGCAGGCCGACGTATTAATATA 60.381 45.833 0.00 0.00 0.00 0.86
83 84 3.585862 CAGCAGGCCGACGTATTAATAT 58.414 45.455 0.00 0.00 0.00 1.28
84 85 2.288579 CCAGCAGGCCGACGTATTAATA 60.289 50.000 0.00 0.00 0.00 0.98
85 86 1.540363 CCAGCAGGCCGACGTATTAAT 60.540 52.381 0.00 0.00 0.00 1.40
86 87 0.179094 CCAGCAGGCCGACGTATTAA 60.179 55.000 0.00 0.00 0.00 1.40
87 88 1.324740 ACCAGCAGGCCGACGTATTA 61.325 55.000 0.00 0.00 39.06 0.98
88 89 2.186903 CCAGCAGGCCGACGTATT 59.813 61.111 0.00 0.00 0.00 1.89
89 90 3.075005 ACCAGCAGGCCGACGTAT 61.075 61.111 0.00 0.00 39.06 3.06
90 91 4.063967 CACCAGCAGGCCGACGTA 62.064 66.667 0.00 0.00 39.06 3.57
94 95 4.269523 AAAGCACCAGCAGGCCGA 62.270 61.111 0.00 0.00 45.49 5.54
95 96 4.047059 CAAAGCACCAGCAGGCCG 62.047 66.667 0.00 0.00 45.49 6.13
96 97 2.598394 TCAAAGCACCAGCAGGCC 60.598 61.111 0.00 0.00 45.49 5.19
97 98 1.737355 TTGTCAAAGCACCAGCAGGC 61.737 55.000 0.00 0.00 45.49 4.85
98 99 0.031178 GTTGTCAAAGCACCAGCAGG 59.969 55.000 0.00 0.00 45.49 4.85
99 100 0.317269 CGTTGTCAAAGCACCAGCAG 60.317 55.000 0.00 0.00 45.49 4.24
100 101 0.746204 TCGTTGTCAAAGCACCAGCA 60.746 50.000 0.00 0.00 45.49 4.41
101 102 0.317020 GTCGTTGTCAAAGCACCAGC 60.317 55.000 0.00 0.00 42.56 4.85
102 103 0.042188 CGTCGTTGTCAAAGCACCAG 60.042 55.000 0.00 0.00 0.00 4.00
103 104 1.433053 CCGTCGTTGTCAAAGCACCA 61.433 55.000 0.00 0.00 0.00 4.17
104 105 1.278637 CCGTCGTTGTCAAAGCACC 59.721 57.895 0.00 0.00 0.00 5.01
105 106 1.368850 GCCGTCGTTGTCAAAGCAC 60.369 57.895 0.00 0.00 0.00 4.40
106 107 2.539338 GGCCGTCGTTGTCAAAGCA 61.539 57.895 0.00 0.00 0.00 3.91
107 108 0.947180 TAGGCCGTCGTTGTCAAAGC 60.947 55.000 0.00 0.00 0.00 3.51
108 109 1.068474 CTAGGCCGTCGTTGTCAAAG 58.932 55.000 0.00 0.00 0.00 2.77
109 110 0.320073 CCTAGGCCGTCGTTGTCAAA 60.320 55.000 0.00 0.00 0.00 2.69
110 111 1.290955 CCTAGGCCGTCGTTGTCAA 59.709 57.895 0.00 0.00 0.00 3.18
111 112 2.642254 CCCTAGGCCGTCGTTGTCA 61.642 63.158 2.05 0.00 0.00 3.58
112 113 2.183555 CCCTAGGCCGTCGTTGTC 59.816 66.667 2.05 0.00 0.00 3.18
113 114 4.078516 GCCCTAGGCCGTCGTTGT 62.079 66.667 2.05 0.00 44.06 3.32
138 139 0.376152 TCGTCTTCATAGGTCGCGAC 59.624 55.000 30.67 30.67 0.00 5.19
139 140 1.063616 CTTCGTCTTCATAGGTCGCGA 59.936 52.381 3.71 3.71 0.00 5.87
140 141 1.467875 CTTCGTCTTCATAGGTCGCG 58.532 55.000 0.00 0.00 0.00 5.87
141 142 1.536284 CCCTTCGTCTTCATAGGTCGC 60.536 57.143 0.00 0.00 0.00 5.19
142 143 1.067212 CCCCTTCGTCTTCATAGGTCG 59.933 57.143 0.00 0.00 0.00 4.79
143 144 2.108970 ACCCCTTCGTCTTCATAGGTC 58.891 52.381 0.00 0.00 0.00 3.85
144 145 1.831736 CACCCCTTCGTCTTCATAGGT 59.168 52.381 0.00 0.00 0.00 3.08
145 146 1.139058 CCACCCCTTCGTCTTCATAGG 59.861 57.143 0.00 0.00 0.00 2.57
146 147 2.101582 CTCCACCCCTTCGTCTTCATAG 59.898 54.545 0.00 0.00 0.00 2.23
147 148 2.108168 CTCCACCCCTTCGTCTTCATA 58.892 52.381 0.00 0.00 0.00 2.15
148 149 0.905357 CTCCACCCCTTCGTCTTCAT 59.095 55.000 0.00 0.00 0.00 2.57
149 150 1.192146 CCTCCACCCCTTCGTCTTCA 61.192 60.000 0.00 0.00 0.00 3.02
150 151 1.192803 ACCTCCACCCCTTCGTCTTC 61.193 60.000 0.00 0.00 0.00 2.87
151 152 1.152096 ACCTCCACCCCTTCGTCTT 60.152 57.895 0.00 0.00 0.00 3.01
152 153 1.609794 GACCTCCACCCCTTCGTCT 60.610 63.158 0.00 0.00 0.00 4.18
153 154 2.657066 GGACCTCCACCCCTTCGTC 61.657 68.421 0.00 0.00 35.64 4.20
154 155 2.606826 GGACCTCCACCCCTTCGT 60.607 66.667 0.00 0.00 35.64 3.85
155 156 3.771160 CGGACCTCCACCCCTTCG 61.771 72.222 0.00 0.00 35.14 3.79
156 157 2.606826 ACGGACCTCCACCCCTTC 60.607 66.667 0.00 0.00 35.14 3.46
157 158 2.928396 CACGGACCTCCACCCCTT 60.928 66.667 0.00 0.00 35.14 3.95
160 161 4.016706 CACCACGGACCTCCACCC 62.017 72.222 0.00 0.00 35.14 4.61
161 162 4.016706 CCACCACGGACCTCCACC 62.017 72.222 0.00 0.00 36.56 4.61
162 163 3.236003 GACCACCACGGACCTCCAC 62.236 68.421 0.00 0.00 38.63 4.02
163 164 2.920912 GACCACCACGGACCTCCA 60.921 66.667 0.00 0.00 38.63 3.86
164 165 3.703127 GGACCACCACGGACCTCC 61.703 72.222 0.00 0.00 45.35 4.30
165 166 4.065281 CGGACCACCACGGACCTC 62.065 72.222 0.00 0.00 46.49 3.85
166 167 3.899545 ATCGGACCACCACGGACCT 62.900 63.158 0.00 0.00 46.49 3.85
167 168 3.387947 ATCGGACCACCACGGACC 61.388 66.667 0.00 0.00 45.34 4.46
168 169 2.125673 CATCGGACCACCACGGAC 60.126 66.667 0.00 0.00 38.63 4.79
169 170 2.283316 TCATCGGACCACCACGGA 60.283 61.111 0.00 0.00 38.63 4.69
170 171 2.184322 CTCATCGGACCACCACGG 59.816 66.667 0.00 0.00 42.50 4.94
171 172 1.446099 CACTCATCGGACCACCACG 60.446 63.158 0.00 0.00 35.59 4.94
172 173 0.389948 GTCACTCATCGGACCACCAC 60.390 60.000 0.00 0.00 35.59 4.16
173 174 0.830023 TGTCACTCATCGGACCACCA 60.830 55.000 0.00 0.00 35.59 4.17
174 175 0.320374 TTGTCACTCATCGGACCACC 59.680 55.000 0.00 0.00 33.09 4.61
175 176 1.000955 ACTTGTCACTCATCGGACCAC 59.999 52.381 0.00 0.00 33.09 4.16
176 177 1.000843 CACTTGTCACTCATCGGACCA 59.999 52.381 0.00 0.00 33.09 4.02
177 178 1.673033 CCACTTGTCACTCATCGGACC 60.673 57.143 0.00 0.00 33.09 4.46
178 179 1.272490 TCCACTTGTCACTCATCGGAC 59.728 52.381 0.00 0.00 34.63 4.79
179 180 1.546029 CTCCACTTGTCACTCATCGGA 59.454 52.381 0.00 0.00 0.00 4.55
180 181 1.546029 TCTCCACTTGTCACTCATCGG 59.454 52.381 0.00 0.00 0.00 4.18
181 182 2.230025 ACTCTCCACTTGTCACTCATCG 59.770 50.000 0.00 0.00 0.00 3.84
182 183 3.256879 TCACTCTCCACTTGTCACTCATC 59.743 47.826 0.00 0.00 0.00 2.92
183 184 3.234353 TCACTCTCCACTTGTCACTCAT 58.766 45.455 0.00 0.00 0.00 2.90
184 185 2.625314 CTCACTCTCCACTTGTCACTCA 59.375 50.000 0.00 0.00 0.00 3.41
185 186 2.029470 CCTCACTCTCCACTTGTCACTC 60.029 54.545 0.00 0.00 0.00 3.51
186 187 1.967066 CCTCACTCTCCACTTGTCACT 59.033 52.381 0.00 0.00 0.00 3.41
187 188 1.001406 CCCTCACTCTCCACTTGTCAC 59.999 57.143 0.00 0.00 0.00 3.67
188 189 1.342074 CCCTCACTCTCCACTTGTCA 58.658 55.000 0.00 0.00 0.00 3.58
189 190 0.610687 CCCCTCACTCTCCACTTGTC 59.389 60.000 0.00 0.00 0.00 3.18
190 191 0.191064 TCCCCTCACTCTCCACTTGT 59.809 55.000 0.00 0.00 0.00 3.16
191 192 0.901124 CTCCCCTCACTCTCCACTTG 59.099 60.000 0.00 0.00 0.00 3.16
192 193 0.252467 CCTCCCCTCACTCTCCACTT 60.252 60.000 0.00 0.00 0.00 3.16
193 194 1.149782 TCCTCCCCTCACTCTCCACT 61.150 60.000 0.00 0.00 0.00 4.00
194 195 0.686112 CTCCTCCCCTCACTCTCCAC 60.686 65.000 0.00 0.00 0.00 4.02
195 196 1.700368 CTCCTCCCCTCACTCTCCA 59.300 63.158 0.00 0.00 0.00 3.86
196 197 1.760480 GCTCCTCCCCTCACTCTCC 60.760 68.421 0.00 0.00 0.00 3.71
197 198 2.124693 CGCTCCTCCCCTCACTCTC 61.125 68.421 0.00 0.00 0.00 3.20
198 199 2.043450 CGCTCCTCCCCTCACTCT 60.043 66.667 0.00 0.00 0.00 3.24
199 200 3.151022 CCGCTCCTCCCCTCACTC 61.151 72.222 0.00 0.00 0.00 3.51
200 201 4.787280 CCCGCTCCTCCCCTCACT 62.787 72.222 0.00 0.00 0.00 3.41
223 224 4.785512 AGAGTTGCGAGCTCGGCG 62.786 66.667 35.10 13.72 40.23 6.46
224 225 2.897641 ATCAGAGTTGCGAGCTCGGC 62.898 60.000 35.10 26.49 40.23 5.54
225 226 1.140589 ATCAGAGTTGCGAGCTCGG 59.859 57.895 35.10 17.93 40.23 4.63
226 227 1.750572 GCATCAGAGTTGCGAGCTCG 61.751 60.000 31.37 31.37 43.27 5.03
227 228 2.005220 GCATCAGAGTTGCGAGCTC 58.995 57.895 2.73 2.73 0.00 4.09
228 229 4.198625 GCATCAGAGTTGCGAGCT 57.801 55.556 0.00 0.00 0.00 4.09
233 234 1.086634 GTCCCTCGCATCAGAGTTGC 61.087 60.000 0.00 0.00 36.56 4.17
234 235 0.247460 TGTCCCTCGCATCAGAGTTG 59.753 55.000 0.00 0.00 36.56 3.16
235 236 0.534412 CTGTCCCTCGCATCAGAGTT 59.466 55.000 0.00 0.00 36.56 3.01
236 237 1.326213 CCTGTCCCTCGCATCAGAGT 61.326 60.000 0.00 0.00 36.56 3.24
237 238 1.440893 CCTGTCCCTCGCATCAGAG 59.559 63.158 0.00 0.00 37.97 3.35
238 239 2.060383 CCCTGTCCCTCGCATCAGA 61.060 63.158 0.00 0.00 0.00 3.27
239 240 1.617018 TTCCCTGTCCCTCGCATCAG 61.617 60.000 0.00 0.00 0.00 2.90
240 241 1.612146 TTCCCTGTCCCTCGCATCA 60.612 57.895 0.00 0.00 0.00 3.07
241 242 1.144936 CTTCCCTGTCCCTCGCATC 59.855 63.158 0.00 0.00 0.00 3.91
242 243 1.306141 TCTTCCCTGTCCCTCGCAT 60.306 57.895 0.00 0.00 0.00 4.73
243 244 2.119611 TCTTCCCTGTCCCTCGCA 59.880 61.111 0.00 0.00 0.00 5.10
244 245 2.579738 GTCTTCCCTGTCCCTCGC 59.420 66.667 0.00 0.00 0.00 5.03
245 246 2.885861 CGTCTTCCCTGTCCCTCG 59.114 66.667 0.00 0.00 0.00 4.63
246 247 2.579738 GCGTCTTCCCTGTCCCTC 59.420 66.667 0.00 0.00 0.00 4.30
247 248 3.382832 CGCGTCTTCCCTGTCCCT 61.383 66.667 0.00 0.00 0.00 4.20
248 249 3.358076 CTCGCGTCTTCCCTGTCCC 62.358 68.421 5.77 0.00 0.00 4.46
249 250 2.182030 CTCGCGTCTTCCCTGTCC 59.818 66.667 5.77 0.00 0.00 4.02
250 251 2.507324 GCTCGCGTCTTCCCTGTC 60.507 66.667 5.77 0.00 0.00 3.51
251 252 3.288308 CTGCTCGCGTCTTCCCTGT 62.288 63.158 5.77 0.00 0.00 4.00
252 253 2.507992 CTGCTCGCGTCTTCCCTG 60.508 66.667 5.77 0.00 0.00 4.45
253 254 3.764466 CCTGCTCGCGTCTTCCCT 61.764 66.667 5.77 0.00 0.00 4.20
254 255 3.296709 TTCCTGCTCGCGTCTTCCC 62.297 63.158 5.77 0.00 0.00 3.97
255 256 1.807573 CTTCCTGCTCGCGTCTTCC 60.808 63.158 5.77 0.00 0.00 3.46
256 257 1.073768 GTCTTCCTGCTCGCGTCTTC 61.074 60.000 5.77 0.00 0.00 2.87
257 258 1.080434 GTCTTCCTGCTCGCGTCTT 60.080 57.895 5.77 0.00 0.00 3.01
258 259 1.528292 AAGTCTTCCTGCTCGCGTCT 61.528 55.000 5.77 0.00 0.00 4.18
259 260 1.080434 AAGTCTTCCTGCTCGCGTC 60.080 57.895 5.77 0.00 0.00 5.19
260 261 1.373497 CAAGTCTTCCTGCTCGCGT 60.373 57.895 5.77 0.00 0.00 6.01
261 262 1.347817 GACAAGTCTTCCTGCTCGCG 61.348 60.000 0.00 0.00 0.00 5.87
262 263 0.037790 AGACAAGTCTTCCTGCTCGC 60.038 55.000 0.00 0.00 36.31 5.03
263 264 1.730772 CGAGACAAGTCTTCCTGCTCG 60.731 57.143 3.96 0.00 40.61 5.03
264 265 1.403514 CCGAGACAAGTCTTCCTGCTC 60.404 57.143 3.96 0.00 40.61 4.26
265 266 0.605589 CCGAGACAAGTCTTCCTGCT 59.394 55.000 3.96 0.00 40.61 4.24
266 267 0.390472 CCCGAGACAAGTCTTCCTGC 60.390 60.000 3.96 0.00 40.61 4.85
267 268 0.247736 CCCCGAGACAAGTCTTCCTG 59.752 60.000 3.96 0.00 40.61 3.86
268 269 0.114560 TCCCCGAGACAAGTCTTCCT 59.885 55.000 3.96 0.00 40.61 3.36
269 270 1.196012 ATCCCCGAGACAAGTCTTCC 58.804 55.000 3.96 0.00 40.61 3.46
270 271 3.700038 TCTTATCCCCGAGACAAGTCTTC 59.300 47.826 3.96 0.00 40.61 2.87
271 272 3.709587 TCTTATCCCCGAGACAAGTCTT 58.290 45.455 3.96 0.00 40.61 3.01
272 273 3.383698 TCTTATCCCCGAGACAAGTCT 57.616 47.619 1.68 1.68 43.78 3.24
273 274 3.892588 AGATCTTATCCCCGAGACAAGTC 59.107 47.826 0.00 0.00 0.00 3.01
274 275 3.639094 CAGATCTTATCCCCGAGACAAGT 59.361 47.826 0.00 0.00 0.00 3.16
275 276 3.891977 TCAGATCTTATCCCCGAGACAAG 59.108 47.826 0.00 0.00 0.00 3.16
276 277 3.910989 TCAGATCTTATCCCCGAGACAA 58.089 45.455 0.00 0.00 0.00 3.18
277 278 3.595190 TCAGATCTTATCCCCGAGACA 57.405 47.619 0.00 0.00 0.00 3.41
278 279 3.637229 TGTTCAGATCTTATCCCCGAGAC 59.363 47.826 0.00 0.00 0.00 3.36
279 280 3.891977 CTGTTCAGATCTTATCCCCGAGA 59.108 47.826 0.00 0.00 0.00 4.04
280 281 3.553922 GCTGTTCAGATCTTATCCCCGAG 60.554 52.174 3.84 0.00 0.00 4.63
281 282 2.365617 GCTGTTCAGATCTTATCCCCGA 59.634 50.000 3.84 0.00 0.00 5.14
282 283 2.366916 AGCTGTTCAGATCTTATCCCCG 59.633 50.000 3.84 0.00 0.00 5.73
283 284 3.389329 TCAGCTGTTCAGATCTTATCCCC 59.611 47.826 14.67 0.00 0.00 4.81
284 285 4.376146 GTCAGCTGTTCAGATCTTATCCC 58.624 47.826 14.67 0.00 0.00 3.85
285 286 4.047822 CGTCAGCTGTTCAGATCTTATCC 58.952 47.826 14.67 0.00 0.00 2.59
286 287 4.047822 CCGTCAGCTGTTCAGATCTTATC 58.952 47.826 14.67 0.00 0.00 1.75
287 288 3.449018 ACCGTCAGCTGTTCAGATCTTAT 59.551 43.478 14.67 0.00 0.00 1.73
288 289 2.826128 ACCGTCAGCTGTTCAGATCTTA 59.174 45.455 14.67 0.00 0.00 2.10
289 290 1.620819 ACCGTCAGCTGTTCAGATCTT 59.379 47.619 14.67 0.00 0.00 2.40
290 291 1.067283 CACCGTCAGCTGTTCAGATCT 60.067 52.381 14.67 0.00 0.00 2.75
291 292 1.354040 CACCGTCAGCTGTTCAGATC 58.646 55.000 14.67 0.00 0.00 2.75
292 293 0.671781 GCACCGTCAGCTGTTCAGAT 60.672 55.000 14.67 0.00 0.00 2.90
293 294 1.300931 GCACCGTCAGCTGTTCAGA 60.301 57.895 14.67 0.00 0.00 3.27
294 295 2.661566 CGCACCGTCAGCTGTTCAG 61.662 63.158 14.67 3.99 0.00 3.02
295 296 2.661537 CGCACCGTCAGCTGTTCA 60.662 61.111 14.67 0.00 0.00 3.18
296 297 4.077188 GCGCACCGTCAGCTGTTC 62.077 66.667 14.67 7.56 0.00 3.18
297 298 2.709125 TTAGCGCACCGTCAGCTGTT 62.709 55.000 14.67 0.00 41.80 3.16
298 299 2.507110 ATTAGCGCACCGTCAGCTGT 62.507 55.000 14.67 0.00 41.80 4.40
299 300 1.756375 GATTAGCGCACCGTCAGCTG 61.756 60.000 11.47 7.63 41.80 4.24
300 301 1.519455 GATTAGCGCACCGTCAGCT 60.519 57.895 11.47 3.15 44.24 4.24
301 302 2.860628 CGATTAGCGCACCGTCAGC 61.861 63.158 11.47 0.00 0.00 4.26
302 303 3.299585 CGATTAGCGCACCGTCAG 58.700 61.111 11.47 0.00 0.00 3.51
312 313 3.470567 CGGCCGATCGCGATTAGC 61.471 66.667 26.92 26.92 40.82 3.09
313 314 0.937699 TTTCGGCCGATCGCGATTAG 60.938 55.000 31.56 19.33 40.82 1.73
314 315 1.066093 TTTCGGCCGATCGCGATTA 59.934 52.632 31.56 8.52 40.82 1.75
315 316 2.202824 TTTCGGCCGATCGCGATT 60.203 55.556 31.56 6.93 40.82 3.34
316 317 2.901051 AAGTTTCGGCCGATCGCGAT 62.901 55.000 31.56 23.97 40.82 4.58
317 318 3.636313 AAGTTTCGGCCGATCGCGA 62.636 57.895 31.56 13.09 40.82 5.87
318 319 2.736682 AAAGTTTCGGCCGATCGCG 61.737 57.895 31.56 9.31 38.94 5.87
319 320 1.226018 CAAAGTTTCGGCCGATCGC 60.226 57.895 31.56 21.10 0.00 4.58
320 321 1.017177 TCCAAAGTTTCGGCCGATCG 61.017 55.000 31.56 13.32 0.00 3.69
321 322 0.446616 GTCCAAAGTTTCGGCCGATC 59.553 55.000 31.56 24.03 0.00 3.69
322 323 0.958876 GGTCCAAAGTTTCGGCCGAT 60.959 55.000 31.56 12.17 0.00 4.18
323 324 1.598685 GGTCCAAAGTTTCGGCCGA 60.599 57.895 27.28 27.28 0.00 5.54
324 325 2.951458 GGTCCAAAGTTTCGGCCG 59.049 61.111 22.12 22.12 0.00 6.13
325 326 2.622962 CCGGTCCAAAGTTTCGGCC 61.623 63.158 0.00 0.00 34.17 6.13
326 327 2.951458 CCGGTCCAAAGTTTCGGC 59.049 61.111 0.00 0.00 34.17 5.54
327 328 2.951458 GCCGGTCCAAAGTTTCGG 59.049 61.111 1.90 8.66 43.13 4.30
328 329 2.554272 CGCCGGTCCAAAGTTTCG 59.446 61.111 1.90 0.00 0.00 3.46
329 330 2.254350 GCGCCGGTCCAAAGTTTC 59.746 61.111 1.90 0.00 0.00 2.78
330 331 3.656045 CGCGCCGGTCCAAAGTTT 61.656 61.111 1.90 0.00 0.00 2.66
353 354 2.124320 TTTGGGGCGCTGATAGGC 60.124 61.111 7.64 0.00 0.00 3.93
354 355 2.189499 GCTTTGGGGCGCTGATAGG 61.189 63.158 7.64 0.00 0.00 2.57
355 356 1.031571 TTGCTTTGGGGCGCTGATAG 61.032 55.000 7.64 0.00 34.52 2.08
356 357 0.610509 TTTGCTTTGGGGCGCTGATA 60.611 50.000 7.64 0.00 34.52 2.15
357 358 1.259840 ATTTGCTTTGGGGCGCTGAT 61.260 50.000 7.64 0.00 34.52 2.90
358 359 1.907807 ATTTGCTTTGGGGCGCTGA 60.908 52.632 7.64 0.00 34.52 4.26
359 360 1.738830 CATTTGCTTTGGGGCGCTG 60.739 57.895 7.64 0.00 34.52 5.18
360 361 2.658422 CATTTGCTTTGGGGCGCT 59.342 55.556 7.64 0.00 34.52 5.92
361 362 3.120385 GCATTTGCTTTGGGGCGC 61.120 61.111 0.00 0.00 38.21 6.53
385 386 6.640907 GGTGAAAAACATGGATACTTGAACAC 59.359 38.462 0.00 0.00 44.16 3.32
499 501 6.725246 ACTCCACGAATTTTACAAAACTCTG 58.275 36.000 0.00 0.00 0.00 3.35
579 581 0.623723 AAAATCAGGGCGGCTAAGGA 59.376 50.000 9.56 1.76 0.00 3.36
632 941 4.108902 CACACTGTGTGCACGAGT 57.891 55.556 26.02 13.65 41.89 4.18
646 955 2.637382 TGGTACCAAGAAGATGAGCACA 59.363 45.455 13.60 0.00 0.00 4.57
785 1094 0.109226 GTAGTCACTGACAGGTCGCC 60.109 60.000 11.80 0.00 34.60 5.54
832 1493 3.891586 GACGTCTCCGCGTGCTCAA 62.892 63.158 8.70 0.00 45.79 3.02
950 1632 1.211212 TGGTTCCGGTAGATCTCTCGA 59.789 52.381 16.21 0.00 0.00 4.04
958 1640 1.667151 CCGTGTTGGTTCCGGTAGA 59.333 57.895 0.00 0.00 37.00 2.59
1033 1725 1.645710 GGGTAGGGGATCATCACGAT 58.354 55.000 0.00 0.00 36.91 3.73
1034 1726 0.826256 CGGGTAGGGGATCATCACGA 60.826 60.000 0.00 0.00 0.00 4.35
1098 1790 4.284550 TGGAAGCCCCTGGTGTGC 62.285 66.667 0.00 0.00 35.38 4.57
1318 2010 1.975327 CCTCCTCGTTGAGCTTGGA 59.025 57.895 0.00 0.00 0.00 3.53
1565 2285 7.414429 GCACACACACAGACACATATATCAAAT 60.414 37.037 0.00 0.00 0.00 2.32
1570 2290 5.089970 AGCACACACACAGACACATATAT 57.910 39.130 0.00 0.00 0.00 0.86
1601 2329 9.914834 AATTACTATGTTGCCTCCAGTTTAATA 57.085 29.630 0.00 0.00 0.00 0.98
1672 5847 0.456824 CAGTCGATGGTCGTGTCCAG 60.457 60.000 0.00 0.00 41.35 3.86
2115 6290 1.022451 GCCGCACGTTCCATAGGAAA 61.022 55.000 0.00 0.00 43.86 3.13
2415 6595 2.610859 ATGGCCTCCACCTCGGTT 60.611 61.111 3.32 0.00 35.80 4.44
2451 6631 3.815757 GCATCTCTTGTCCTTTTTCCCCT 60.816 47.826 0.00 0.00 0.00 4.79
2540 6720 2.540515 CGATGAGCCTATCAACGTTGT 58.459 47.619 26.47 16.50 45.95 3.32
2610 6790 7.704899 AGCAACAAAACTACCTTTGTGATAAAC 59.295 33.333 2.70 0.00 46.32 2.01
2686 6872 4.652421 TGCTACAAATGCCCATGTAATG 57.348 40.909 0.00 0.00 46.21 1.90
2755 6956 6.974048 GCGGTGTTAGAAAAGGAAACTAAAAA 59.026 34.615 0.00 0.00 42.68 1.94
2756 6957 6.319405 AGCGGTGTTAGAAAAGGAAACTAAAA 59.681 34.615 0.00 0.00 42.68 1.52
2775 8062 2.866762 GGCTACTTTTCATAGAGCGGTG 59.133 50.000 0.00 0.00 33.85 4.94
2789 8076 4.843728 TCGATCTTCAAAATGGGCTACTT 58.156 39.130 0.00 0.00 0.00 2.24
2794 8081 3.879295 TGATCTCGATCTTCAAAATGGGC 59.121 43.478 8.25 0.00 38.60 5.36
2795 8082 5.048921 CCATGATCTCGATCTTCAAAATGGG 60.049 44.000 8.25 0.00 38.60 4.00
2804 8091 1.622811 GGCCTCCATGATCTCGATCTT 59.377 52.381 0.00 0.00 38.60 2.40
2871 8160 7.773864 TTCGTGTGTAGTATTTGTTTTGAGA 57.226 32.000 0.00 0.00 0.00 3.27
2886 8175 7.277760 CACATTTCATCCTTCTATTCGTGTGTA 59.722 37.037 0.00 0.00 0.00 2.90
2887 8176 6.092670 CACATTTCATCCTTCTATTCGTGTGT 59.907 38.462 0.00 0.00 0.00 3.72
2888 8177 6.092670 ACACATTTCATCCTTCTATTCGTGTG 59.907 38.462 0.00 0.00 38.32 3.82
2889 8178 6.173339 ACACATTTCATCCTTCTATTCGTGT 58.827 36.000 0.00 0.00 0.00 4.49
2890 8179 6.668541 ACACATTTCATCCTTCTATTCGTG 57.331 37.500 0.00 0.00 0.00 4.35
2892 8181 8.278408 CACATACACATTTCATCCTTCTATTCG 58.722 37.037 0.00 0.00 0.00 3.34
2893 8182 9.113838 ACACATACACATTTCATCCTTCTATTC 57.886 33.333 0.00 0.00 0.00 1.75
3076 8370 8.393366 TCACTAATACAGAGACGTAATGTACAC 58.607 37.037 0.00 0.00 32.58 2.90
3191 8488 6.261381 GTGCAATAATGACCGGGATTTAGTTA 59.739 38.462 6.32 0.00 0.00 2.24
3203 8500 6.038271 ACGAATCTAAAGGTGCAATAATGACC 59.962 38.462 0.00 0.00 0.00 4.02
3227 8524 3.057456 ACAAGTCCACGAGTAGATGTCAC 60.057 47.826 0.00 0.00 0.00 3.67
3242 8539 3.138304 TGATAACACACTGCACAAGTCC 58.862 45.455 0.00 0.00 36.83 3.85
3250 8547 9.840427 ATACTTGTAAAAATGATAACACACTGC 57.160 29.630 0.00 0.00 0.00 4.40
3355 8655 4.241999 GCATGCGCTGGCTTACCG 62.242 66.667 9.73 0.00 40.82 4.02
3373 8673 6.912591 GGAGATGTTGGTTATAAAAATGCTCG 59.087 38.462 0.00 0.00 0.00 5.03
3376 8676 8.947055 AATGGAGATGTTGGTTATAAAAATGC 57.053 30.769 0.00 0.00 0.00 3.56
3390 8690 9.334947 CTTCATGTATTGTCTAATGGAGATGTT 57.665 33.333 0.00 0.00 36.29 2.71
3392 8692 8.899427 ACTTCATGTATTGTCTAATGGAGATG 57.101 34.615 0.00 0.00 36.29 2.90
3393 8693 8.932610 AGACTTCATGTATTGTCTAATGGAGAT 58.067 33.333 9.55 0.00 37.92 2.75
3458 8758 1.288335 ACTAGGTGAGACCCTGGGTAG 59.712 57.143 20.61 13.14 39.75 3.18
3464 8764 4.205587 CACGTAATACTAGGTGAGACCCT 58.794 47.826 0.00 0.00 43.54 4.34
3479 8779 6.349033 GGATTTTTGTTGACTAGCCACGTAAT 60.349 38.462 0.00 0.00 0.00 1.89
3483 8783 3.252215 TGGATTTTTGTTGACTAGCCACG 59.748 43.478 0.00 0.00 0.00 4.94
3491 8791 2.719046 CGCGACTTGGATTTTTGTTGAC 59.281 45.455 0.00 0.00 0.00 3.18
3492 8792 2.356382 ACGCGACTTGGATTTTTGTTGA 59.644 40.909 15.93 0.00 0.00 3.18
3512 8812 1.219522 AACACTAGACGTTGCGCCAC 61.220 55.000 4.18 2.21 0.00 5.01
3515 8815 2.473984 ACTAAAACACTAGACGTTGCGC 59.526 45.455 0.00 0.00 0.00 6.09
3523 8836 4.321750 CGCCAAGAGGACTAAAACACTAGA 60.322 45.833 0.00 0.00 36.89 2.43
3527 8840 2.762745 TCGCCAAGAGGACTAAAACAC 58.237 47.619 0.00 0.00 36.89 3.32
3529 8842 3.374367 GGAATCGCCAAGAGGACTAAAAC 59.626 47.826 0.00 0.00 36.89 2.43
3559 8872 0.179108 CGGATCCGAGGGAAACTCAC 60.179 60.000 30.62 0.00 46.98 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.