Multiple sequence alignment - TraesCS2D01G272000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G272000 chr2D 100.000 9373 0 0 1 9373 336468127 336477499 0.000000e+00 17309.0
1 TraesCS2D01G272000 chr2D 97.222 36 1 0 1694 1729 336469789 336469824 2.830000e-05 62.1
2 TraesCS2D01G272000 chr2D 97.222 36 1 0 1663 1698 336469820 336469855 2.830000e-05 62.1
3 TraesCS2D01G272000 chr2B 94.667 4125 147 24 1694 5772 404107075 404111172 0.000000e+00 6331.0
4 TraesCS2D01G272000 chr2B 96.572 2771 69 9 6354 9099 404111628 404114397 0.000000e+00 4567.0
5 TraesCS2D01G272000 chr2B 97.836 1063 23 0 636 1698 404106048 404107110 0.000000e+00 1836.0
6 TraesCS2D01G272000 chr2B 96.383 470 6 2 5844 6313 404111171 404111629 0.000000e+00 763.0
7 TraesCS2D01G272000 chr2B 94.915 236 12 0 9138 9373 404114399 404114634 4.130000e-98 370.0
8 TraesCS2D01G272000 chr2B 79.217 332 41 13 6723 7027 45691926 45691596 1.230000e-48 206.0
9 TraesCS2D01G272000 chr2B 79.217 332 41 13 6723 7027 488202288 488201958 1.230000e-48 206.0
10 TraesCS2D01G272000 chr2A 96.802 2314 49 14 1694 3995 446520204 446522504 0.000000e+00 3840.0
11 TraesCS2D01G272000 chr2A 96.753 1971 43 12 6657 8622 446525578 446527532 0.000000e+00 3265.0
12 TraesCS2D01G272000 chr2A 94.036 1660 53 9 5016 6655 446523822 446525455 0.000000e+00 2475.0
13 TraesCS2D01G272000 chr2A 93.349 1308 71 7 4041 5333 446522503 446523809 0.000000e+00 1919.0
14 TraesCS2D01G272000 chr2A 96.475 1163 29 9 543 1698 446519082 446520239 0.000000e+00 1910.0
15 TraesCS2D01G272000 chr2A 94.421 233 11 1 8764 8994 446528076 446528308 3.220000e-94 357.0
16 TraesCS2D01G272000 chr2A 85.246 305 34 6 206 502 446516367 446516668 4.250000e-78 303.0
17 TraesCS2D01G272000 chr2A 91.549 142 10 2 8622 8762 446527810 446527950 2.670000e-45 195.0
18 TraesCS2D01G272000 chr5B 80.638 470 49 23 6593 7027 185723997 185723535 9.080000e-85 326.0
19 TraesCS2D01G272000 chr5B 82.550 149 24 1 6351 6497 535562692 535562840 7.640000e-26 130.0
20 TraesCS2D01G272000 chr5D 85.532 235 30 3 6349 6579 461542046 461541812 9.400000e-60 243.0
21 TraesCS2D01G272000 chr6B 79.518 332 40 13 6723 7027 456249252 456249582 2.650000e-50 211.0
22 TraesCS2D01G272000 chr6B 79.217 332 41 13 6723 7027 270873474 270873804 1.230000e-48 206.0
23 TraesCS2D01G272000 chr6B 79.217 332 41 13 6723 7027 416889958 416889628 1.230000e-48 206.0
24 TraesCS2D01G272000 chr3D 94.203 138 8 0 6645 6782 263327722 263327585 2.650000e-50 211.0
25 TraesCS2D01G272000 chr3B 94.203 138 8 0 6645 6782 355428250 355428113 2.650000e-50 211.0
26 TraesCS2D01G272000 chr7B 79.217 332 41 13 6723 7027 399781456 399781786 1.230000e-48 206.0
27 TraesCS2D01G272000 chr6A 78.655 342 50 10 6606 6927 315604038 315604376 1.230000e-48 206.0
28 TraesCS2D01G272000 chr6A 84.211 133 14 2 6349 6479 418095382 418095509 1.280000e-23 122.0
29 TraesCS2D01G272000 chr1A 79.217 332 41 13 6723 7027 162990841 162990511 1.230000e-48 206.0
30 TraesCS2D01G272000 chr1A 84.211 114 16 1 6349 6460 576701271 576701158 9.950000e-20 110.0
31 TraesCS2D01G272000 chr7D 90.805 87 6 2 6349 6434 456714025 456714110 2.140000e-21 115.0
32 TraesCS2D01G272000 chr3A 88.750 80 9 0 6355 6434 668603752 668603673 2.150000e-16 99.0
33 TraesCS2D01G272000 chr3A 87.500 80 10 0 6355 6434 668428561 668428482 1.000000e-14 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G272000 chr2D 336468127 336477499 9372 False 17309.0 17309 100.000000 1 9373 1 chr2D.!!$F1 9372
1 TraesCS2D01G272000 chr2B 404106048 404114634 8586 False 2773.4 6331 96.074600 636 9373 5 chr2B.!!$F1 8737
2 TraesCS2D01G272000 chr2A 446516367 446528308 11941 False 1783.0 3840 93.578875 206 8994 8 chr2A.!!$F1 8788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.030101 GGCGACTCGAGGAAGATGAG 59.970 60.000 18.41 0.00 35.85 2.90 F
313 318 0.031857 ATCTCATTCGCTCGAGGCAG 59.968 55.000 15.58 3.90 41.91 4.85 F
448 454 0.245813 AACTAGAAGGAACGGCCGAC 59.754 55.000 35.90 24.12 43.43 4.79 F
449 455 0.896940 ACTAGAAGGAACGGCCGACA 60.897 55.000 35.90 7.93 43.43 4.35 F
1668 4081 1.065551 GCTGCAAAGTCACCGTTTTCT 59.934 47.619 0.00 0.00 0.00 2.52 F
1696 4109 2.118951 AGCATGCCCAGCCAGTTT 59.881 55.556 15.66 0.00 0.00 2.66 F
1697 4110 2.263540 GCATGCCCAGCCAGTTTG 59.736 61.111 6.36 0.00 0.00 2.93 F
1698 4111 2.263540 CATGCCCAGCCAGTTTGC 59.736 61.111 0.00 0.00 0.00 3.68 F
1971 4423 2.932614 GTCCCGATTGTTCATCTGTCTG 59.067 50.000 0.00 0.00 0.00 3.51 F
3325 5787 3.125316 CAAACTTCCTCGTCGGTTTACA 58.875 45.455 0.00 0.00 31.80 2.41 F
4194 6659 0.038892 CATGCACCAGACAAGCCAAC 60.039 55.000 0.00 0.00 0.00 3.77 F
4706 7197 0.037326 TCACTTCCTGCCATGACGTC 60.037 55.000 9.11 9.11 0.00 4.34 F
4733 7224 0.392193 ACCTGCAAGAAGCCAGATCG 60.392 55.000 0.00 0.00 44.83 3.69 F
5088 7587 0.950836 CAGTTGATGTGGGTTTCGCA 59.049 50.000 0.00 0.00 40.50 5.10 F
7014 9985 1.201965 GCGAACTTTGAAGCTGGATCG 60.202 52.381 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 4097 0.179048 AAAAAGCAAACTGGCTGGGC 60.179 50.000 0.00 0.00 45.07 5.36 R
2141 4598 1.213926 GATTCTGATGCCCCTGGTTCT 59.786 52.381 0.00 0.00 0.00 3.01 R
2174 4631 6.770785 ACTGAATAGAGAGTCTCCTGTATGAC 59.229 42.308 16.74 7.25 0.00 3.06 R
2479 4936 9.330063 CATGTTAGCTTCAGATGTTATAGGAAA 57.670 33.333 0.00 0.00 0.00 3.13 R
2955 5413 1.588404 CTTATGGCACTGTTAGTCGCG 59.412 52.381 0.00 0.00 0.00 5.87 R
3535 5998 3.025924 CCAGAACTTGGCTTGCTCA 57.974 52.632 0.00 0.00 40.87 4.26 R
3627 6090 5.841957 ATACAAGCATCAAGGATTTGTCC 57.158 39.130 0.89 0.00 35.73 4.02 R
3993 6458 1.079127 CAGGCCACGTTCTAGGGTG 60.079 63.158 5.01 0.00 0.00 4.61 R
3997 6462 1.153549 GCTCCAGGCCACGTTCTAG 60.154 63.158 5.01 0.00 34.27 2.43 R
4589 7080 0.038343 GGCGGCATGTTGTTTGTGAT 60.038 50.000 3.07 0.00 0.00 3.06 R
5563 8396 1.153489 CATCTGTGAGGCAGGGTCG 60.153 63.158 0.00 0.00 45.08 4.79 R
6997 9968 2.554032 CCAACGATCCAGCTTCAAAGTT 59.446 45.455 0.00 0.00 0.00 2.66 R
7014 9985 4.202245 TGGTGAGTTAGCTACATCCAAC 57.798 45.455 0.00 0.00 0.00 3.77 R
7259 10230 3.448093 TTTCCATTGCCATCAGTGGTA 57.552 42.857 6.70 0.00 46.61 3.25 R
9049 12438 0.170561 GCACTGGCAGAGCTTCATTG 59.829 55.000 26.50 10.91 40.72 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.141858 CCTCCTTATCACCTCCCAAGC 59.858 57.143 0.00 0.00 0.00 4.01
21 22 2.122768 CTCCTTATCACCTCCCAAGCT 58.877 52.381 0.00 0.00 0.00 3.74
22 23 1.839994 TCCTTATCACCTCCCAAGCTG 59.160 52.381 0.00 0.00 0.00 4.24
23 24 1.561542 CCTTATCACCTCCCAAGCTGT 59.438 52.381 0.00 0.00 0.00 4.40
24 25 2.420687 CCTTATCACCTCCCAAGCTGTC 60.421 54.545 0.00 0.00 0.00 3.51
25 26 0.824109 TATCACCTCCCAAGCTGTCG 59.176 55.000 0.00 0.00 0.00 4.35
26 27 2.527951 ATCACCTCCCAAGCTGTCGC 62.528 60.000 0.00 0.00 0.00 5.19
27 28 3.241530 ACCTCCCAAGCTGTCGCA 61.242 61.111 0.00 0.00 39.10 5.10
28 29 2.270205 CCTCCCAAGCTGTCGCAT 59.730 61.111 0.00 0.00 39.10 4.73
29 30 1.817099 CCTCCCAAGCTGTCGCATC 60.817 63.158 0.00 0.00 39.10 3.91
30 31 1.817099 CTCCCAAGCTGTCGCATCC 60.817 63.158 0.00 0.00 39.10 3.51
31 32 2.249413 CTCCCAAGCTGTCGCATCCT 62.249 60.000 0.00 0.00 39.10 3.24
32 33 1.817099 CCCAAGCTGTCGCATCCTC 60.817 63.158 0.00 0.00 39.10 3.71
33 34 1.817099 CCAAGCTGTCGCATCCTCC 60.817 63.158 0.00 0.00 39.10 4.30
34 35 1.220206 CAAGCTGTCGCATCCTCCT 59.780 57.895 0.00 0.00 39.10 3.69
35 36 0.809241 CAAGCTGTCGCATCCTCCTC 60.809 60.000 0.00 0.00 39.10 3.71
36 37 2.279120 GCTGTCGCATCCTCCTCG 60.279 66.667 0.00 0.00 35.78 4.63
37 38 3.069980 GCTGTCGCATCCTCCTCGT 62.070 63.158 0.00 0.00 35.78 4.18
38 39 1.064946 CTGTCGCATCCTCCTCGTC 59.935 63.158 0.00 0.00 0.00 4.20
39 40 2.343163 CTGTCGCATCCTCCTCGTCC 62.343 65.000 0.00 0.00 0.00 4.79
40 41 2.044352 TCGCATCCTCCTCGTCCA 60.044 61.111 0.00 0.00 0.00 4.02
41 42 1.680989 TCGCATCCTCCTCGTCCAA 60.681 57.895 0.00 0.00 0.00 3.53
42 43 1.218047 CGCATCCTCCTCGTCCAAA 59.782 57.895 0.00 0.00 0.00 3.28
43 44 0.391130 CGCATCCTCCTCGTCCAAAA 60.391 55.000 0.00 0.00 0.00 2.44
44 45 1.087501 GCATCCTCCTCGTCCAAAAC 58.912 55.000 0.00 0.00 0.00 2.43
45 46 1.610624 GCATCCTCCTCGTCCAAAACA 60.611 52.381 0.00 0.00 0.00 2.83
46 47 2.941415 GCATCCTCCTCGTCCAAAACAT 60.941 50.000 0.00 0.00 0.00 2.71
47 48 2.472695 TCCTCCTCGTCCAAAACATG 57.527 50.000 0.00 0.00 0.00 3.21
48 49 1.697432 TCCTCCTCGTCCAAAACATGT 59.303 47.619 0.00 0.00 0.00 3.21
49 50 1.806542 CCTCCTCGTCCAAAACATGTG 59.193 52.381 0.00 0.00 0.00 3.21
50 51 2.549992 CCTCCTCGTCCAAAACATGTGA 60.550 50.000 0.00 0.00 0.00 3.58
51 52 3.338249 CTCCTCGTCCAAAACATGTGAT 58.662 45.455 0.00 0.00 0.00 3.06
52 53 3.334691 TCCTCGTCCAAAACATGTGATC 58.665 45.455 0.00 0.00 0.00 2.92
53 54 3.073678 CCTCGTCCAAAACATGTGATCA 58.926 45.455 0.00 0.00 0.00 2.92
54 55 3.125829 CCTCGTCCAAAACATGTGATCAG 59.874 47.826 0.00 0.00 0.00 2.90
55 56 3.073678 TCGTCCAAAACATGTGATCAGG 58.926 45.455 0.00 0.00 0.00 3.86
56 57 2.414559 CGTCCAAAACATGTGATCAGGC 60.415 50.000 0.00 0.00 0.00 4.85
57 58 2.094545 GTCCAAAACATGTGATCAGGCC 60.095 50.000 0.00 0.00 0.00 5.19
58 59 1.894466 CCAAAACATGTGATCAGGCCA 59.106 47.619 5.01 0.00 0.00 5.36
59 60 2.498481 CCAAAACATGTGATCAGGCCAT 59.502 45.455 5.01 0.00 0.00 4.40
60 61 3.517602 CAAAACATGTGATCAGGCCATG 58.482 45.455 18.41 18.41 41.31 3.66
61 62 1.108776 AACATGTGATCAGGCCATGC 58.891 50.000 19.43 0.00 39.62 4.06
62 63 0.257905 ACATGTGATCAGGCCATGCT 59.742 50.000 19.43 8.50 39.62 3.79
63 64 1.491754 ACATGTGATCAGGCCATGCTA 59.508 47.619 19.43 0.00 39.62 3.49
64 65 2.152016 CATGTGATCAGGCCATGCTAG 58.848 52.381 5.01 0.00 30.63 3.42
65 66 0.471191 TGTGATCAGGCCATGCTAGG 59.529 55.000 5.01 0.00 0.00 3.02
66 67 0.761187 GTGATCAGGCCATGCTAGGA 59.239 55.000 5.01 0.00 0.00 2.94
67 68 1.141657 GTGATCAGGCCATGCTAGGAA 59.858 52.381 5.01 0.00 0.00 3.36
68 69 1.845791 TGATCAGGCCATGCTAGGAAA 59.154 47.619 5.01 0.00 0.00 3.13
69 70 2.241941 TGATCAGGCCATGCTAGGAAAA 59.758 45.455 5.01 0.00 0.00 2.29
70 71 3.117398 TGATCAGGCCATGCTAGGAAAAT 60.117 43.478 5.01 0.00 0.00 1.82
71 72 2.658285 TCAGGCCATGCTAGGAAAATG 58.342 47.619 5.01 0.00 0.00 2.32
72 73 1.068127 CAGGCCATGCTAGGAAAATGC 59.932 52.381 5.01 0.00 0.00 3.56
73 74 1.113788 GGCCATGCTAGGAAAATGCA 58.886 50.000 0.00 0.00 41.13 3.96
74 75 1.068127 GGCCATGCTAGGAAAATGCAG 59.932 52.381 0.00 0.00 40.18 4.41
75 76 2.026641 GCCATGCTAGGAAAATGCAGA 58.973 47.619 0.00 0.00 40.18 4.26
76 77 2.034305 GCCATGCTAGGAAAATGCAGAG 59.966 50.000 0.00 0.00 40.18 3.35
77 78 2.621998 CCATGCTAGGAAAATGCAGAGG 59.378 50.000 0.00 0.00 40.18 3.69
78 79 1.755179 TGCTAGGAAAATGCAGAGGC 58.245 50.000 0.00 0.00 41.68 4.70
88 89 3.478274 GCAGAGGCAGGGGAGGAG 61.478 72.222 0.00 0.00 40.72 3.69
89 90 2.767496 CAGAGGCAGGGGAGGAGG 60.767 72.222 0.00 0.00 0.00 4.30
90 91 2.955246 AGAGGCAGGGGAGGAGGA 60.955 66.667 0.00 0.00 0.00 3.71
91 92 2.445654 GAGGCAGGGGAGGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
92 93 4.101077 AGGCAGGGGAGGAGGAGG 62.101 72.222 0.00 0.00 0.00 4.30
93 94 4.095400 GGCAGGGGAGGAGGAGGA 62.095 72.222 0.00 0.00 0.00 3.71
94 95 2.445654 GCAGGGGAGGAGGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
95 96 2.285180 CAGGGGAGGAGGAGGAGG 59.715 72.222 0.00 0.00 0.00 4.30
96 97 2.204705 AGGGGAGGAGGAGGAGGT 60.205 66.667 0.00 0.00 0.00 3.85
97 98 2.041405 GGGGAGGAGGAGGAGGTG 60.041 72.222 0.00 0.00 0.00 4.00
98 99 2.041405 GGGAGGAGGAGGAGGTGG 60.041 72.222 0.00 0.00 0.00 4.61
99 100 2.637640 GGGAGGAGGAGGAGGTGGA 61.638 68.421 0.00 0.00 0.00 4.02
100 101 1.075600 GGAGGAGGAGGAGGTGGAG 60.076 68.421 0.00 0.00 0.00 3.86
101 102 1.075600 GAGGAGGAGGAGGTGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
102 103 2.766229 GGAGGAGGAGGTGGAGGC 60.766 72.222 0.00 0.00 0.00 4.70
103 104 2.039624 GAGGAGGAGGTGGAGGCA 59.960 66.667 0.00 0.00 0.00 4.75
104 105 2.040278 AGGAGGAGGTGGAGGCAG 59.960 66.667 0.00 0.00 0.00 4.85
105 106 2.039624 GGAGGAGGTGGAGGCAGA 59.960 66.667 0.00 0.00 0.00 4.26
106 107 2.063378 GGAGGAGGTGGAGGCAGAG 61.063 68.421 0.00 0.00 0.00 3.35
107 108 1.000993 GAGGAGGTGGAGGCAGAGA 59.999 63.158 0.00 0.00 0.00 3.10
108 109 0.616111 GAGGAGGTGGAGGCAGAGAA 60.616 60.000 0.00 0.00 0.00 2.87
109 110 0.617249 AGGAGGTGGAGGCAGAGAAG 60.617 60.000 0.00 0.00 0.00 2.85
110 111 0.616111 GGAGGTGGAGGCAGAGAAGA 60.616 60.000 0.00 0.00 0.00 2.87
111 112 1.270907 GAGGTGGAGGCAGAGAAGAA 58.729 55.000 0.00 0.00 0.00 2.52
112 113 1.206849 GAGGTGGAGGCAGAGAAGAAG 59.793 57.143 0.00 0.00 0.00 2.85
113 114 1.203237 AGGTGGAGGCAGAGAAGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
114 115 1.206849 GGTGGAGGCAGAGAAGAAGAG 59.793 57.143 0.00 0.00 0.00 2.85
115 116 1.206849 GTGGAGGCAGAGAAGAAGAGG 59.793 57.143 0.00 0.00 0.00 3.69
116 117 0.829990 GGAGGCAGAGAAGAAGAGGG 59.170 60.000 0.00 0.00 0.00 4.30
117 118 0.829990 GAGGCAGAGAAGAAGAGGGG 59.170 60.000 0.00 0.00 0.00 4.79
118 119 1.223211 GGCAGAGAAGAAGAGGGGC 59.777 63.158 0.00 0.00 0.00 5.80
119 120 1.153469 GCAGAGAAGAAGAGGGGCG 60.153 63.158 0.00 0.00 0.00 6.13
120 121 1.608717 GCAGAGAAGAAGAGGGGCGA 61.609 60.000 0.00 0.00 0.00 5.54
121 122 0.459489 CAGAGAAGAAGAGGGGCGAG 59.541 60.000 0.00 0.00 0.00 5.03
122 123 0.333312 AGAGAAGAAGAGGGGCGAGA 59.667 55.000 0.00 0.00 0.00 4.04
123 124 0.744281 GAGAAGAAGAGGGGCGAGAG 59.256 60.000 0.00 0.00 0.00 3.20
124 125 0.686112 AGAAGAAGAGGGGCGAGAGG 60.686 60.000 0.00 0.00 0.00 3.69
125 126 1.681486 GAAGAAGAGGGGCGAGAGGG 61.681 65.000 0.00 0.00 0.00 4.30
126 127 2.042843 GAAGAGGGGCGAGAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
127 128 2.042435 AAGAGGGGCGAGAGGGAG 60.042 66.667 0.00 0.00 0.00 4.30
128 129 3.687828 AAGAGGGGCGAGAGGGAGG 62.688 68.421 0.00 0.00 0.00 4.30
133 134 4.798682 GGCGAGAGGGAGGGGGAA 62.799 72.222 0.00 0.00 0.00 3.97
134 135 3.157949 GCGAGAGGGAGGGGGAAG 61.158 72.222 0.00 0.00 0.00 3.46
135 136 2.364961 CGAGAGGGAGGGGGAAGT 59.635 66.667 0.00 0.00 0.00 3.01
136 137 2.060980 CGAGAGGGAGGGGGAAGTG 61.061 68.421 0.00 0.00 0.00 3.16
137 138 1.690985 GAGAGGGAGGGGGAAGTGG 60.691 68.421 0.00 0.00 0.00 4.00
138 139 2.182858 GAGAGGGAGGGGGAAGTGGA 62.183 65.000 0.00 0.00 0.00 4.02
139 140 1.690985 GAGGGAGGGGGAAGTGGAG 60.691 68.421 0.00 0.00 0.00 3.86
140 141 2.692741 GGGAGGGGGAAGTGGAGG 60.693 72.222 0.00 0.00 0.00 4.30
141 142 2.125225 GGAGGGGGAAGTGGAGGT 59.875 66.667 0.00 0.00 0.00 3.85
142 143 2.301738 GGAGGGGGAAGTGGAGGTG 61.302 68.421 0.00 0.00 0.00 4.00
143 144 2.204151 AGGGGGAAGTGGAGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
144 145 4.048470 GGGGGAAGTGGAGGTGGC 62.048 72.222 0.00 0.00 0.00 5.01
145 146 4.410400 GGGGAAGTGGAGGTGGCG 62.410 72.222 0.00 0.00 0.00 5.69
146 147 3.319198 GGGAAGTGGAGGTGGCGA 61.319 66.667 0.00 0.00 0.00 5.54
147 148 2.047179 GGAAGTGGAGGTGGCGAC 60.047 66.667 0.00 0.00 0.00 5.19
148 149 2.584391 GGAAGTGGAGGTGGCGACT 61.584 63.158 0.00 0.00 0.00 4.18
149 150 1.079750 GAAGTGGAGGTGGCGACTC 60.080 63.158 0.00 0.10 0.00 3.36
150 151 2.820767 GAAGTGGAGGTGGCGACTCG 62.821 65.000 0.00 0.00 35.82 4.18
151 152 3.371063 GTGGAGGTGGCGACTCGA 61.371 66.667 1.63 0.00 35.82 4.04
152 153 3.062466 TGGAGGTGGCGACTCGAG 61.062 66.667 11.84 11.84 35.82 4.04
153 154 3.827898 GGAGGTGGCGACTCGAGG 61.828 72.222 18.41 0.17 35.82 4.63
154 155 2.750637 GAGGTGGCGACTCGAGGA 60.751 66.667 18.41 0.00 0.00 3.71
155 156 2.282958 AGGTGGCGACTCGAGGAA 60.283 61.111 18.41 0.00 0.00 3.36
156 157 2.182030 GGTGGCGACTCGAGGAAG 59.818 66.667 18.41 8.48 0.00 3.46
157 158 2.341101 GGTGGCGACTCGAGGAAGA 61.341 63.158 18.41 0.00 0.00 2.87
158 159 1.668101 GGTGGCGACTCGAGGAAGAT 61.668 60.000 18.41 0.00 0.00 2.40
159 160 0.526524 GTGGCGACTCGAGGAAGATG 60.527 60.000 18.41 0.56 0.00 2.90
160 161 0.679960 TGGCGACTCGAGGAAGATGA 60.680 55.000 18.41 0.00 0.00 2.92
161 162 0.030101 GGCGACTCGAGGAAGATGAG 59.970 60.000 18.41 0.00 35.85 2.90
162 163 0.736053 GCGACTCGAGGAAGATGAGT 59.264 55.000 18.41 0.00 45.18 3.41
163 164 1.532921 GCGACTCGAGGAAGATGAGTG 60.533 57.143 18.41 0.00 42.71 3.51
164 165 2.010497 CGACTCGAGGAAGATGAGTGA 58.990 52.381 18.41 0.00 42.71 3.41
165 166 2.031560 CGACTCGAGGAAGATGAGTGAG 59.968 54.545 18.41 0.00 42.71 3.51
166 167 3.275143 GACTCGAGGAAGATGAGTGAGA 58.725 50.000 18.41 0.00 42.71 3.27
167 168 3.882888 GACTCGAGGAAGATGAGTGAGAT 59.117 47.826 18.41 0.00 42.71 2.75
168 169 3.631686 ACTCGAGGAAGATGAGTGAGATG 59.368 47.826 18.41 0.00 41.21 2.90
169 170 2.954989 TCGAGGAAGATGAGTGAGATGG 59.045 50.000 0.00 0.00 0.00 3.51
170 171 2.035704 CGAGGAAGATGAGTGAGATGGG 59.964 54.545 0.00 0.00 0.00 4.00
171 172 3.303938 GAGGAAGATGAGTGAGATGGGA 58.696 50.000 0.00 0.00 0.00 4.37
172 173 3.708631 GAGGAAGATGAGTGAGATGGGAA 59.291 47.826 0.00 0.00 0.00 3.97
173 174 3.710677 AGGAAGATGAGTGAGATGGGAAG 59.289 47.826 0.00 0.00 0.00 3.46
174 175 3.708631 GGAAGATGAGTGAGATGGGAAGA 59.291 47.826 0.00 0.00 0.00 2.87
175 176 4.347583 GGAAGATGAGTGAGATGGGAAGAT 59.652 45.833 0.00 0.00 0.00 2.40
176 177 5.541868 GGAAGATGAGTGAGATGGGAAGATA 59.458 44.000 0.00 0.00 0.00 1.98
177 178 6.418057 AAGATGAGTGAGATGGGAAGATAC 57.582 41.667 0.00 0.00 0.00 2.24
178 179 4.522405 AGATGAGTGAGATGGGAAGATACG 59.478 45.833 0.00 0.00 0.00 3.06
179 180 3.898482 TGAGTGAGATGGGAAGATACGA 58.102 45.455 0.00 0.00 0.00 3.43
180 181 3.885901 TGAGTGAGATGGGAAGATACGAG 59.114 47.826 0.00 0.00 0.00 4.18
181 182 3.226777 AGTGAGATGGGAAGATACGAGG 58.773 50.000 0.00 0.00 0.00 4.63
182 183 2.297597 GTGAGATGGGAAGATACGAGGG 59.702 54.545 0.00 0.00 0.00 4.30
183 184 2.177016 TGAGATGGGAAGATACGAGGGA 59.823 50.000 0.00 0.00 0.00 4.20
184 185 3.231818 GAGATGGGAAGATACGAGGGAA 58.768 50.000 0.00 0.00 0.00 3.97
185 186 3.641906 GAGATGGGAAGATACGAGGGAAA 59.358 47.826 0.00 0.00 0.00 3.13
186 187 3.643792 AGATGGGAAGATACGAGGGAAAG 59.356 47.826 0.00 0.00 0.00 2.62
187 188 3.110293 TGGGAAGATACGAGGGAAAGA 57.890 47.619 0.00 0.00 0.00 2.52
188 189 3.654273 TGGGAAGATACGAGGGAAAGAT 58.346 45.455 0.00 0.00 0.00 2.40
189 190 3.388024 TGGGAAGATACGAGGGAAAGATG 59.612 47.826 0.00 0.00 0.00 2.90
190 191 3.244249 GGGAAGATACGAGGGAAAGATGG 60.244 52.174 0.00 0.00 0.00 3.51
191 192 3.244249 GGAAGATACGAGGGAAAGATGGG 60.244 52.174 0.00 0.00 0.00 4.00
192 193 3.330126 AGATACGAGGGAAAGATGGGA 57.670 47.619 0.00 0.00 0.00 4.37
193 194 3.235200 AGATACGAGGGAAAGATGGGAG 58.765 50.000 0.00 0.00 0.00 4.30
194 195 2.840640 TACGAGGGAAAGATGGGAGA 57.159 50.000 0.00 0.00 0.00 3.71
195 196 2.182516 ACGAGGGAAAGATGGGAGAT 57.817 50.000 0.00 0.00 0.00 2.75
196 197 3.330126 ACGAGGGAAAGATGGGAGATA 57.670 47.619 0.00 0.00 0.00 1.98
197 198 3.863086 ACGAGGGAAAGATGGGAGATAT 58.137 45.455 0.00 0.00 0.00 1.63
198 199 4.235372 ACGAGGGAAAGATGGGAGATATT 58.765 43.478 0.00 0.00 0.00 1.28
199 200 4.660771 ACGAGGGAAAGATGGGAGATATTT 59.339 41.667 0.00 0.00 0.00 1.40
200 201 5.132816 ACGAGGGAAAGATGGGAGATATTTT 59.867 40.000 0.00 0.00 0.00 1.82
201 202 5.703130 CGAGGGAAAGATGGGAGATATTTTC 59.297 44.000 0.00 0.00 0.00 2.29
202 203 6.596869 AGGGAAAGATGGGAGATATTTTCA 57.403 37.500 0.00 0.00 0.00 2.69
203 204 6.368805 AGGGAAAGATGGGAGATATTTTCAC 58.631 40.000 0.00 0.00 0.00 3.18
204 205 6.068853 AGGGAAAGATGGGAGATATTTTCACA 60.069 38.462 0.64 0.00 32.00 3.58
205 206 6.264067 GGGAAAGATGGGAGATATTTTCACAG 59.736 42.308 0.56 0.00 30.25 3.66
206 207 6.264067 GGAAAGATGGGAGATATTTTCACAGG 59.736 42.308 0.56 0.00 30.25 4.00
207 208 6.581388 AAGATGGGAGATATTTTCACAGGA 57.419 37.500 0.56 0.00 30.25 3.86
208 209 6.185114 AGATGGGAGATATTTTCACAGGAG 57.815 41.667 0.56 0.00 30.25 3.69
209 210 5.907662 AGATGGGAGATATTTTCACAGGAGA 59.092 40.000 0.56 0.00 30.25 3.71
210 211 5.620738 TGGGAGATATTTTCACAGGAGAG 57.379 43.478 0.00 0.00 0.00 3.20
211 212 5.280499 TGGGAGATATTTTCACAGGAGAGA 58.720 41.667 0.00 0.00 0.00 3.10
212 213 5.365025 TGGGAGATATTTTCACAGGAGAGAG 59.635 44.000 0.00 0.00 0.00 3.20
213 214 5.600484 GGGAGATATTTTCACAGGAGAGAGA 59.400 44.000 0.00 0.00 0.00 3.10
214 215 6.239289 GGGAGATATTTTCACAGGAGAGAGAG 60.239 46.154 0.00 0.00 0.00 3.20
215 216 6.549364 GGAGATATTTTCACAGGAGAGAGAGA 59.451 42.308 0.00 0.00 0.00 3.10
216 217 7.255590 GGAGATATTTTCACAGGAGAGAGAGAG 60.256 44.444 0.00 0.00 0.00 3.20
217 218 7.353525 AGATATTTTCACAGGAGAGAGAGAGA 58.646 38.462 0.00 0.00 0.00 3.10
218 219 5.920193 ATTTTCACAGGAGAGAGAGAGAG 57.080 43.478 0.00 0.00 0.00 3.20
219 220 4.649267 TTTCACAGGAGAGAGAGAGAGA 57.351 45.455 0.00 0.00 0.00 3.10
220 221 3.912496 TCACAGGAGAGAGAGAGAGAG 57.088 52.381 0.00 0.00 0.00 3.20
226 227 3.392616 AGGAGAGAGAGAGAGAGGATGAC 59.607 52.174 0.00 0.00 0.00 3.06
245 246 5.215252 TGACGAGGGAGATATTTTCATCC 57.785 43.478 0.00 0.00 0.00 3.51
246 247 9.887964 GGATGACGAGGGAGATATTTTCATCCC 62.888 48.148 13.94 0.63 46.81 3.85
256 261 1.544724 TTTTCATCCCGCCTTCTTGG 58.455 50.000 0.00 0.00 39.35 3.61
266 271 1.471676 CGCCTTCTTGGTCGCTAATCT 60.472 52.381 0.00 0.00 38.35 2.40
272 277 5.453339 CCTTCTTGGTCGCTAATCTATCCAA 60.453 44.000 0.00 0.00 34.47 3.53
273 278 5.808366 TCTTGGTCGCTAATCTATCCAAT 57.192 39.130 0.00 0.00 35.01 3.16
276 281 6.266786 TCTTGGTCGCTAATCTATCCAATACA 59.733 38.462 0.00 0.00 35.01 2.29
286 291 5.552870 TCTATCCAATACAGAAAGGAGGC 57.447 43.478 0.00 0.00 32.91 4.70
295 300 3.837355 ACAGAAAGGAGGCAAAACTCAT 58.163 40.909 0.00 0.00 39.27 2.90
313 318 0.031857 ATCTCATTCGCTCGAGGCAG 59.968 55.000 15.58 3.90 41.91 4.85
350 355 5.278907 CCCAATTGTCATGCACAGAAAAGTA 60.279 40.000 4.43 0.00 35.97 2.24
355 360 6.201226 TGTCATGCACAGAAAAGTAAAACA 57.799 33.333 0.00 0.00 0.00 2.83
356 361 6.804677 TGTCATGCACAGAAAAGTAAAACAT 58.195 32.000 0.00 0.00 0.00 2.71
376 382 3.062122 TGGATGTAAAAACGGAGGGAC 57.938 47.619 0.00 0.00 0.00 4.46
378 384 2.354003 GGATGTAAAAACGGAGGGACGA 60.354 50.000 0.00 0.00 37.61 4.20
380 386 1.688197 TGTAAAAACGGAGGGACGACT 59.312 47.619 0.00 0.00 37.61 4.18
384 390 2.156051 AAACGGAGGGACGACTGAGC 62.156 60.000 0.00 0.00 37.61 4.26
393 399 1.423395 GACGACTGAGCCTTTGACAG 58.577 55.000 0.00 0.00 37.62 3.51
396 402 1.905922 GACTGAGCCTTTGACAGCGC 61.906 60.000 0.00 0.00 35.38 5.92
407 413 0.584396 TGACAGCGCCGTAAAAAGTG 59.416 50.000 2.29 0.00 0.00 3.16
408 414 0.724785 GACAGCGCCGTAAAAAGTGC 60.725 55.000 2.29 0.00 39.80 4.40
423 429 0.905357 AGTGCGAAGGCTGGTAGATT 59.095 50.000 0.00 0.00 40.82 2.40
427 433 1.676014 GCGAAGGCTGGTAGATTGTGT 60.676 52.381 0.00 0.00 35.83 3.72
432 438 2.639839 AGGCTGGTAGATTGTGTGAACT 59.360 45.455 0.00 0.00 0.00 3.01
441 447 6.590677 GGTAGATTGTGTGAACTAGAAGGAAC 59.409 42.308 0.00 0.00 0.00 3.62
448 454 0.245813 AACTAGAAGGAACGGCCGAC 59.754 55.000 35.90 24.12 43.43 4.79
449 455 0.896940 ACTAGAAGGAACGGCCGACA 60.897 55.000 35.90 7.93 43.43 4.35
473 479 2.827604 CGCTCATAATGGCGGGTAG 58.172 57.895 6.43 0.00 46.42 3.18
478 484 2.501723 CTCATAATGGCGGGTAGGCTAT 59.498 50.000 0.00 0.00 46.88 2.97
479 485 3.704566 CTCATAATGGCGGGTAGGCTATA 59.295 47.826 0.00 0.00 46.88 1.31
482 488 1.605058 ATGGCGGGTAGGCTATAGCG 61.605 60.000 18.30 4.75 46.88 4.26
483 489 2.126031 GCGGGTAGGCTATAGCGC 60.126 66.667 18.30 11.04 43.26 5.92
494 500 4.467198 GGCTATAGCGCCTTTTATAGGA 57.533 45.455 18.30 0.00 46.63 2.94
495 501 4.434520 GGCTATAGCGCCTTTTATAGGAG 58.565 47.826 18.30 0.00 46.63 3.69
496 502 4.159879 GGCTATAGCGCCTTTTATAGGAGA 59.840 45.833 18.30 0.00 45.96 3.71
497 503 5.337330 GGCTATAGCGCCTTTTATAGGAGAA 60.337 44.000 18.30 0.00 45.96 2.87
498 504 6.796515 GGCTATAGCGCCTTTTATAGGAGAAA 60.797 42.308 18.30 0.00 45.96 2.52
499 505 8.063364 GGCTATAGCGCCTTTTATAGGAGAAAT 61.063 40.741 18.30 0.00 45.96 2.17
540 546 6.887002 GGGGTAGGAGAAATTATTGATGATCC 59.113 42.308 0.00 0.00 0.00 3.36
542 548 7.461749 GGTAGGAGAAATTATTGATGATCCCA 58.538 38.462 0.00 0.00 0.00 4.37
576 2983 5.767816 AAATAAACTGGTGCGAAGAAACT 57.232 34.783 0.00 0.00 0.00 2.66
620 3027 1.278238 GAACGGTGTAGGCGAATCAG 58.722 55.000 0.00 0.00 0.00 2.90
622 3029 2.230940 CGGTGTAGGCGAATCAGCG 61.231 63.158 10.02 10.02 44.05 5.18
623 3030 1.883084 GGTGTAGGCGAATCAGCGG 60.883 63.158 0.00 0.00 38.18 5.52
698 3111 6.436843 CAAGTCAAAACCAGTTACTTGTCT 57.563 37.500 13.10 3.84 41.21 3.41
1414 3827 7.613801 ACTTTTGCCTGGTATATGTTGTCAATA 59.386 33.333 0.00 0.00 0.00 1.90
1650 4063 3.953612 TGTTTTGTCAGTTCCTTGATGCT 59.046 39.130 0.00 0.00 0.00 3.79
1668 4081 1.065551 GCTGCAAAGTCACCGTTTTCT 59.934 47.619 0.00 0.00 0.00 2.52
1669 4082 2.479560 GCTGCAAAGTCACCGTTTTCTT 60.480 45.455 0.00 0.00 0.00 2.52
1670 4083 3.769536 CTGCAAAGTCACCGTTTTCTTT 58.230 40.909 0.00 0.00 0.00 2.52
1671 4084 4.173256 CTGCAAAGTCACCGTTTTCTTTT 58.827 39.130 0.00 0.00 0.00 2.27
1672 4085 4.561105 TGCAAAGTCACCGTTTTCTTTTT 58.439 34.783 0.00 0.00 0.00 1.94
1673 4086 5.710984 TGCAAAGTCACCGTTTTCTTTTTA 58.289 33.333 0.00 0.00 0.00 1.52
1674 4087 5.802956 TGCAAAGTCACCGTTTTCTTTTTAG 59.197 36.000 0.00 0.00 0.00 1.85
1675 4088 5.803461 GCAAAGTCACCGTTTTCTTTTTAGT 59.197 36.000 0.00 0.00 0.00 2.24
1676 4089 6.968335 GCAAAGTCACCGTTTTCTTTTTAGTA 59.032 34.615 0.00 0.00 0.00 1.82
1677 4090 7.165318 GCAAAGTCACCGTTTTCTTTTTAGTAG 59.835 37.037 0.00 0.00 0.00 2.57
1678 4091 6.296365 AGTCACCGTTTTCTTTTTAGTAGC 57.704 37.500 0.00 0.00 0.00 3.58
1679 4092 5.818857 AGTCACCGTTTTCTTTTTAGTAGCA 59.181 36.000 0.00 0.00 0.00 3.49
1680 4093 6.018180 AGTCACCGTTTTCTTTTTAGTAGCAG 60.018 38.462 0.00 0.00 0.00 4.24
1681 4094 4.909880 CACCGTTTTCTTTTTAGTAGCAGC 59.090 41.667 0.00 0.00 0.00 5.25
1682 4095 4.577283 ACCGTTTTCTTTTTAGTAGCAGCA 59.423 37.500 0.00 0.00 0.00 4.41
1683 4096 5.240844 ACCGTTTTCTTTTTAGTAGCAGCAT 59.759 36.000 0.00 0.00 0.00 3.79
1684 4097 5.569059 CCGTTTTCTTTTTAGTAGCAGCATG 59.431 40.000 0.00 0.00 40.87 4.06
1695 4108 2.678934 CAGCATGCCCAGCCAGTT 60.679 61.111 15.66 0.00 0.00 3.16
1696 4109 2.118951 AGCATGCCCAGCCAGTTT 59.881 55.556 15.66 0.00 0.00 2.66
1697 4110 2.263540 GCATGCCCAGCCAGTTTG 59.736 61.111 6.36 0.00 0.00 2.93
1698 4111 2.263540 CATGCCCAGCCAGTTTGC 59.736 61.111 0.00 0.00 0.00 3.68
1739 4188 4.473444 CCAGCCAGTTTGTTGGGATATAT 58.527 43.478 0.00 0.00 38.72 0.86
1740 4189 5.630121 CCAGCCAGTTTGTTGGGATATATA 58.370 41.667 0.00 0.00 38.72 0.86
1741 4190 5.473504 CCAGCCAGTTTGTTGGGATATATAC 59.526 44.000 0.00 0.00 38.72 1.47
1742 4191 6.299141 CAGCCAGTTTGTTGGGATATATACT 58.701 40.000 0.00 0.00 38.72 2.12
1743 4192 7.450074 CAGCCAGTTTGTTGGGATATATACTA 58.550 38.462 0.00 0.00 38.72 1.82
1784 4233 3.806949 TTGTGCTGATTTAGTTCCCCT 57.193 42.857 0.00 0.00 0.00 4.79
1788 4237 4.280677 TGTGCTGATTTAGTTCCCCTTTTG 59.719 41.667 0.00 0.00 0.00 2.44
1863 4312 3.250040 ACATACGCAGAAACCTTGTTGTC 59.750 43.478 0.00 0.00 0.00 3.18
1971 4423 2.932614 GTCCCGATTGTTCATCTGTCTG 59.067 50.000 0.00 0.00 0.00 3.51
2114 4571 6.133356 TGATTTTGTTTCCTAGGTCCAAGTT 58.867 36.000 9.08 2.35 0.00 2.66
2141 4598 3.455910 AGCCATACAGCATTCTTGGACTA 59.544 43.478 0.00 0.00 34.23 2.59
2174 4631 6.459848 GGGCATCAGAATCTGAAATCAAGAAG 60.460 42.308 17.59 0.90 44.04 2.85
2767 5225 9.474313 AGCTCCAAGGTATGAAAATACAAAATA 57.526 29.630 0.00 0.00 0.00 1.40
2955 5413 3.829948 CACTCCTGTCAATGTCAAATGC 58.170 45.455 0.00 0.00 0.00 3.56
3040 5498 6.913170 TGATTTGTCATCCTAGCTTCAAAAC 58.087 36.000 0.00 0.00 0.00 2.43
3041 5499 6.716628 TGATTTGTCATCCTAGCTTCAAAACT 59.283 34.615 0.00 0.00 0.00 2.66
3075 5533 8.747538 TTTGATCTGATTCAGTGATCATGATT 57.252 30.769 10.14 0.92 43.78 2.57
3079 5537 9.666626 GATCTGATTCAGTGATCATGATTTTTC 57.333 33.333 10.14 0.00 37.23 2.29
3325 5787 3.125316 CAAACTTCCTCGTCGGTTTACA 58.875 45.455 0.00 0.00 31.80 2.41
3355 5818 6.816640 TCTGTTATGAATTACGGGTTCTTCAG 59.183 38.462 0.00 0.00 31.69 3.02
3364 5827 4.094830 ACGGGTTCTTCAGTTTTACCAT 57.905 40.909 0.00 0.00 0.00 3.55
3998 6463 4.098847 GACCAGAGTCGACACCCT 57.901 61.111 19.50 8.77 32.18 4.34
3999 6464 3.261250 GACCAGAGTCGACACCCTA 57.739 57.895 19.50 0.00 32.18 3.53
4000 6465 1.096416 GACCAGAGTCGACACCCTAG 58.904 60.000 19.50 7.35 32.18 3.02
4001 6466 0.697079 ACCAGAGTCGACACCCTAGA 59.303 55.000 19.50 0.00 0.00 2.43
4002 6467 1.075050 ACCAGAGTCGACACCCTAGAA 59.925 52.381 19.50 0.00 0.00 2.10
4127 6592 0.664761 CTCACACCCTGCAACACAAG 59.335 55.000 0.00 0.00 0.00 3.16
4168 6633 3.971702 GGGCTTCCACACCTGCCT 61.972 66.667 0.00 0.00 44.36 4.75
4194 6659 0.038892 CATGCACCAGACAAGCCAAC 60.039 55.000 0.00 0.00 0.00 3.77
4242 6707 0.324275 ACACCCAGCAACACAAAGGT 60.324 50.000 0.00 0.00 0.00 3.50
4282 6747 2.027625 CGGCTTCCACAACGGACTC 61.028 63.158 0.00 0.00 46.36 3.36
4400 6880 3.537874 GGGGTACGATGCCGCTCT 61.538 66.667 0.00 0.00 39.95 4.09
4401 6881 2.198287 GGGGTACGATGCCGCTCTA 61.198 63.158 0.00 0.00 39.95 2.43
4487 6978 3.515316 AACACCGTCCAGTCTGCCG 62.515 63.158 0.00 0.00 0.00 5.69
4589 7080 0.686441 AGAGCACGGGTAGCCATACA 60.686 55.000 12.31 0.00 33.21 2.29
4639 7130 0.044702 TCTCACCACCCTCCATCCAT 59.955 55.000 0.00 0.00 0.00 3.41
4655 7146 4.263639 CCATCCATGGCATATAGTCAACCT 60.264 45.833 6.96 0.00 41.75 3.50
4657 7148 4.234550 TCCATGGCATATAGTCAACCTCT 58.765 43.478 6.96 0.00 34.09 3.69
4661 7152 6.014242 CCATGGCATATAGTCAACCTCTAAGA 60.014 42.308 0.00 0.00 34.09 2.10
4669 7160 3.071167 AGTCAACCTCTAAGAACCACCAC 59.929 47.826 0.00 0.00 0.00 4.16
4706 7197 0.037326 TCACTTCCTGCCATGACGTC 60.037 55.000 9.11 9.11 0.00 4.34
4724 7215 2.288666 GTCTGTGTCAACCTGCAAGAA 58.711 47.619 0.00 0.00 34.07 2.52
4733 7224 0.392193 ACCTGCAAGAAGCCAGATCG 60.392 55.000 0.00 0.00 44.83 3.69
5088 7587 0.950836 CAGTTGATGTGGGTTTCGCA 59.049 50.000 0.00 0.00 40.50 5.10
5090 7589 1.541147 AGTTGATGTGGGTTTCGCATG 59.459 47.619 0.00 0.00 45.66 4.06
5146 7645 7.386851 TGTTTAGGATGGCTATCAATACTAGC 58.613 38.462 12.54 0.00 40.71 3.42
5188 7687 8.742777 ACACAGAGCATGATTAATAAATTGTGT 58.257 29.630 0.00 10.32 34.56 3.72
5261 8090 9.823647 AAGTAATACTCCATTTAGATGACACAG 57.176 33.333 0.00 0.00 35.16 3.66
5423 8256 9.265901 CGTAGGATGATTAATTGACAGATCTTT 57.734 33.333 0.00 0.00 0.00 2.52
5563 8396 6.053005 TGGTTGTAGCTGTATATAAACAGGC 58.947 40.000 7.57 1.43 45.75 4.85
5621 8454 6.312399 TGTTTAGTGTCTGGTTTATGCAAG 57.688 37.500 0.00 0.00 0.00 4.01
5815 8648 9.398538 TGATAAATAACCTTAGCCGTTAAACAT 57.601 29.630 0.00 0.00 29.93 2.71
5840 8673 4.998051 AGTGCTTCAATAAAAGAAGGGGA 58.002 39.130 0.00 0.00 42.08 4.81
5873 8706 9.683069 CTTTGTTGCACTCTGTTCTTATAATTT 57.317 29.630 0.00 0.00 0.00 1.82
5905 8738 4.682787 GCTTTTGCTTCAGTGTACCTTTT 58.317 39.130 0.00 0.00 43.35 2.27
5906 8739 5.109210 GCTTTTGCTTCAGTGTACCTTTTT 58.891 37.500 0.00 0.00 43.35 1.94
5907 8740 5.232202 GCTTTTGCTTCAGTGTACCTTTTTC 59.768 40.000 0.00 0.00 43.35 2.29
5908 8741 6.524101 TTTTGCTTCAGTGTACCTTTTTCT 57.476 33.333 0.00 0.00 0.00 2.52
5909 8742 6.524101 TTTGCTTCAGTGTACCTTTTTCTT 57.476 33.333 0.00 0.00 0.00 2.52
5910 8743 5.751243 TGCTTCAGTGTACCTTTTTCTTC 57.249 39.130 0.00 0.00 0.00 2.87
5911 8744 5.437060 TGCTTCAGTGTACCTTTTTCTTCT 58.563 37.500 0.00 0.00 0.00 2.85
5912 8745 5.885912 TGCTTCAGTGTACCTTTTTCTTCTT 59.114 36.000 0.00 0.00 0.00 2.52
5913 8746 6.038271 TGCTTCAGTGTACCTTTTTCTTCTTC 59.962 38.462 0.00 0.00 0.00 2.87
6117 8950 7.781056 ACTTGTGGTGAATAACTTCATGTTTT 58.219 30.769 0.00 0.00 43.08 2.43
6313 9146 4.631131 TGTTATAAGATCTGCCACCATCG 58.369 43.478 0.00 0.00 0.00 3.84
6412 9245 2.549754 GGCCGAATCATATGGTTCACTG 59.450 50.000 24.75 14.87 0.00 3.66
6485 9320 1.273327 GCAACTTGGGAAGGGTGATTG 59.727 52.381 0.00 0.00 0.00 2.67
6561 9396 5.294734 TGAGCATAGTAGATCCATGCAAA 57.705 39.130 16.75 6.10 45.95 3.68
6984 9955 9.114952 CAGGAGTAAAATTTCCTCTCTAAATCC 57.885 37.037 14.17 4.67 41.86 3.01
6996 9967 1.762222 CTAAATCCGGCCAGAACGCG 61.762 60.000 3.53 3.53 0.00 6.01
6997 9968 2.228389 TAAATCCGGCCAGAACGCGA 62.228 55.000 15.93 0.00 0.00 5.87
7014 9985 1.201965 GCGAACTTTGAAGCTGGATCG 60.202 52.381 0.00 0.00 0.00 3.69
7259 10230 7.986889 ACATTTTCTTCCATAAGCTTGTTTGTT 59.013 29.630 9.86 0.00 32.36 2.83
7480 10461 2.225467 AGCAGAGTGAACTTTTGGCTC 58.775 47.619 0.00 0.00 0.00 4.70
7589 10570 4.832248 TCCAAGAACTTTGCGATATGTCT 58.168 39.130 0.00 0.00 0.00 3.41
7907 10888 3.958798 CCCAGAAAATCAGCTTCATGGAT 59.041 43.478 0.00 0.00 0.00 3.41
8034 11015 3.007398 CAGAGTGAAGAAAGGCAGTAGGT 59.993 47.826 0.00 0.00 0.00 3.08
8303 11287 5.531287 CGAGGAAGAAGAAAAGAAGGGAAAA 59.469 40.000 0.00 0.00 0.00 2.29
8450 11434 7.308229 CCATTTGACTTGTGAAACTTAGAGAGG 60.308 40.741 0.00 0.00 38.04 3.69
8489 11473 6.835819 ACTTATAGAGCATGCGGTAATAGA 57.164 37.500 13.01 0.00 0.00 1.98
8501 11485 7.308589 GCATGCGGTAATAGATACTGGATTTTT 60.309 37.037 0.00 0.00 46.35 1.94
8661 11923 9.675464 AATGATTTAATGATTGCAATTTGGAGT 57.325 25.926 14.33 0.54 0.00 3.85
8693 11955 3.780804 TCCAAATTCTGGGAAGTTCGA 57.219 42.857 0.00 0.00 46.44 3.71
8742 12005 6.518493 AGCCTTGAACGGTAAATCGATTATA 58.482 36.000 11.83 3.73 0.00 0.98
8783 12170 5.363580 AGGAATTTGTCTTCTTGCTTTTCCA 59.636 36.000 0.00 0.00 34.03 3.53
8789 12176 5.380043 TGTCTTCTTGCTTTTCCATCTTCT 58.620 37.500 0.00 0.00 0.00 2.85
9006 12395 8.815565 ATACTCTAATATCATCACTGATCGGT 57.184 34.615 0.00 0.00 41.29 4.69
9009 12398 9.249053 ACTCTAATATCATCACTGATCGGTTAT 57.751 33.333 3.84 0.00 41.29 1.89
9049 12438 3.905153 CTTCCCTTGGCCCAACCCC 62.905 68.421 0.00 0.00 37.83 4.95
9071 12460 1.378250 GAAGCTCTGCCAGTGCCAT 60.378 57.895 14.68 4.87 35.47 4.40
9092 12481 1.064389 GGAGGATGGTTCTTCCCTTGG 60.064 57.143 0.00 0.00 41.23 3.61
9099 12488 1.133294 GGTTCTTCCCTTGGTCCCAAA 60.133 52.381 0.00 0.00 35.33 3.28
9100 12489 1.961394 GTTCTTCCCTTGGTCCCAAAC 59.039 52.381 0.00 0.00 35.33 2.93
9110 12499 2.773993 GGTCCCAAACCTATTGACGA 57.226 50.000 0.00 0.00 45.45 4.20
9111 12500 3.277142 GGTCCCAAACCTATTGACGAT 57.723 47.619 0.00 0.00 45.45 3.73
9112 12501 4.411256 GGTCCCAAACCTATTGACGATA 57.589 45.455 0.00 0.00 45.45 2.92
9113 12502 4.773013 GGTCCCAAACCTATTGACGATAA 58.227 43.478 0.00 0.00 45.45 1.75
9114 12503 5.374071 GGTCCCAAACCTATTGACGATAAT 58.626 41.667 0.00 0.00 45.45 1.28
9115 12504 6.527423 GGTCCCAAACCTATTGACGATAATA 58.473 40.000 0.00 0.00 45.45 0.98
9116 12505 6.426025 GGTCCCAAACCTATTGACGATAATAC 59.574 42.308 0.00 0.00 45.45 1.89
9117 12506 7.215085 GTCCCAAACCTATTGACGATAATACT 58.785 38.462 0.00 0.00 0.00 2.12
9118 12507 7.170998 GTCCCAAACCTATTGACGATAATACTG 59.829 40.741 0.00 0.00 0.00 2.74
9119 12508 7.070198 TCCCAAACCTATTGACGATAATACTGA 59.930 37.037 0.00 0.00 0.00 3.41
9120 12509 7.878127 CCCAAACCTATTGACGATAATACTGAT 59.122 37.037 0.00 0.00 0.00 2.90
9121 12510 9.923143 CCAAACCTATTGACGATAATACTGATA 57.077 33.333 0.00 0.00 0.00 2.15
9132 12521 9.609950 GACGATAATACTGATAACAGAACTACC 57.390 37.037 7.05 0.00 46.03 3.18
9133 12522 9.352191 ACGATAATACTGATAACAGAACTACCT 57.648 33.333 7.05 0.00 46.03 3.08
9144 12533 4.916183 ACAGAACTACCTTAGGTACGACT 58.084 43.478 7.09 4.16 37.09 4.18
9151 12540 3.905784 ACCTTAGGTACGACTGTTTTCG 58.094 45.455 0.15 0.00 44.87 3.46
9229 12618 3.990092 TGTTGAGTCTAATCGTGCAGTT 58.010 40.909 0.00 0.00 0.00 3.16
9231 12620 5.161358 TGTTGAGTCTAATCGTGCAGTTAG 58.839 41.667 0.00 0.00 0.00 2.34
9274 12663 8.967552 ATTTTATAGTACGCATAGCACTACTC 57.032 34.615 0.00 0.00 0.00 2.59
9291 12680 9.935241 AGCACTACTCTAATGATAATACAATGG 57.065 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.141858 GCTTGGGAGGTGATAAGGAGG 59.858 57.143 0.00 0.00 0.00 4.30
1 2 2.122768 AGCTTGGGAGGTGATAAGGAG 58.877 52.381 0.00 0.00 31.08 3.69
2 3 2.270434 AGCTTGGGAGGTGATAAGGA 57.730 50.000 0.00 0.00 31.08 3.36
10 11 2.527951 GATGCGACAGCTTGGGAGGT 62.528 60.000 0.00 0.00 45.42 3.85
11 12 1.817099 GATGCGACAGCTTGGGAGG 60.817 63.158 0.00 0.00 45.42 4.30
12 13 1.817099 GGATGCGACAGCTTGGGAG 60.817 63.158 0.00 0.00 45.42 4.30
13 14 2.244117 GAGGATGCGACAGCTTGGGA 62.244 60.000 0.00 0.00 45.42 4.37
14 15 1.817099 GAGGATGCGACAGCTTGGG 60.817 63.158 0.00 0.00 45.42 4.12
15 16 1.817099 GGAGGATGCGACAGCTTGG 60.817 63.158 0.00 0.00 45.42 3.61
16 17 0.809241 GAGGAGGATGCGACAGCTTG 60.809 60.000 0.00 0.00 45.42 4.01
17 18 1.519719 GAGGAGGATGCGACAGCTT 59.480 57.895 0.00 0.00 45.42 3.74
18 19 2.780094 CGAGGAGGATGCGACAGCT 61.780 63.158 0.00 0.00 45.42 4.24
19 20 2.279120 CGAGGAGGATGCGACAGC 60.279 66.667 0.00 0.00 45.41 4.40
20 21 1.064946 GACGAGGAGGATGCGACAG 59.935 63.158 0.00 0.00 0.00 3.51
21 22 2.415608 GGACGAGGAGGATGCGACA 61.416 63.158 0.00 0.00 0.00 4.35
22 23 1.945354 TTGGACGAGGAGGATGCGAC 61.945 60.000 0.00 0.00 0.00 5.19
23 24 1.254975 TTTGGACGAGGAGGATGCGA 61.255 55.000 0.00 0.00 0.00 5.10
24 25 0.391130 TTTTGGACGAGGAGGATGCG 60.391 55.000 0.00 0.00 0.00 4.73
25 26 1.087501 GTTTTGGACGAGGAGGATGC 58.912 55.000 0.00 0.00 0.00 3.91
26 27 2.472695 TGTTTTGGACGAGGAGGATG 57.527 50.000 0.00 0.00 0.00 3.51
27 28 2.305927 ACATGTTTTGGACGAGGAGGAT 59.694 45.455 0.00 0.00 0.00 3.24
28 29 1.697432 ACATGTTTTGGACGAGGAGGA 59.303 47.619 0.00 0.00 0.00 3.71
29 30 1.806542 CACATGTTTTGGACGAGGAGG 59.193 52.381 0.00 0.00 0.00 4.30
30 31 2.766313 TCACATGTTTTGGACGAGGAG 58.234 47.619 0.00 0.00 0.00 3.69
31 32 2.920724 TCACATGTTTTGGACGAGGA 57.079 45.000 0.00 0.00 0.00 3.71
32 33 3.073678 TGATCACATGTTTTGGACGAGG 58.926 45.455 0.00 0.00 0.00 4.63
33 34 3.125829 CCTGATCACATGTTTTGGACGAG 59.874 47.826 0.00 0.00 0.00 4.18
34 35 3.073678 CCTGATCACATGTTTTGGACGA 58.926 45.455 0.00 0.00 0.00 4.20
35 36 2.414559 GCCTGATCACATGTTTTGGACG 60.415 50.000 0.00 0.00 0.00 4.79
36 37 2.094545 GGCCTGATCACATGTTTTGGAC 60.095 50.000 0.00 0.00 0.00 4.02
37 38 2.170166 GGCCTGATCACATGTTTTGGA 58.830 47.619 0.00 0.00 0.00 3.53
38 39 1.894466 TGGCCTGATCACATGTTTTGG 59.106 47.619 3.32 0.00 0.00 3.28
39 40 3.517602 CATGGCCTGATCACATGTTTTG 58.482 45.455 13.89 0.00 37.72 2.44
40 41 2.093869 GCATGGCCTGATCACATGTTTT 60.094 45.455 20.02 0.00 42.89 2.43
41 42 1.479323 GCATGGCCTGATCACATGTTT 59.521 47.619 20.02 0.00 42.89 2.83
42 43 1.108776 GCATGGCCTGATCACATGTT 58.891 50.000 20.02 0.00 42.89 2.71
43 44 0.257905 AGCATGGCCTGATCACATGT 59.742 50.000 20.02 0.00 42.89 3.21
44 45 2.152016 CTAGCATGGCCTGATCACATG 58.848 52.381 16.59 16.59 43.58 3.21
45 46 1.073444 CCTAGCATGGCCTGATCACAT 59.927 52.381 3.32 0.00 0.00 3.21
46 47 0.471191 CCTAGCATGGCCTGATCACA 59.529 55.000 3.32 0.00 0.00 3.58
47 48 0.761187 TCCTAGCATGGCCTGATCAC 59.239 55.000 3.32 0.00 0.00 3.06
48 49 1.510492 TTCCTAGCATGGCCTGATCA 58.490 50.000 3.32 0.00 0.00 2.92
49 50 2.645838 TTTCCTAGCATGGCCTGATC 57.354 50.000 3.32 0.00 0.00 2.92
50 51 3.228453 CATTTTCCTAGCATGGCCTGAT 58.772 45.455 3.32 0.63 0.00 2.90
51 52 2.658285 CATTTTCCTAGCATGGCCTGA 58.342 47.619 3.32 0.00 0.00 3.86
52 53 1.068127 GCATTTTCCTAGCATGGCCTG 59.932 52.381 3.32 0.34 0.00 4.85
53 54 1.342275 TGCATTTTCCTAGCATGGCCT 60.342 47.619 3.32 0.00 32.55 5.19
54 55 1.068127 CTGCATTTTCCTAGCATGGCC 59.932 52.381 0.00 0.00 37.68 5.36
55 56 2.026641 TCTGCATTTTCCTAGCATGGC 58.973 47.619 0.00 0.00 37.68 4.40
56 57 2.621998 CCTCTGCATTTTCCTAGCATGG 59.378 50.000 0.00 0.00 37.68 3.66
57 58 2.034305 GCCTCTGCATTTTCCTAGCATG 59.966 50.000 0.00 0.00 37.68 4.06
58 59 2.305009 GCCTCTGCATTTTCCTAGCAT 58.695 47.619 0.00 0.00 37.68 3.79
59 60 1.004628 TGCCTCTGCATTTTCCTAGCA 59.995 47.619 0.00 0.00 44.23 3.49
60 61 1.755179 TGCCTCTGCATTTTCCTAGC 58.245 50.000 0.00 0.00 44.23 3.42
71 72 3.478274 CTCCTCCCCTGCCTCTGC 61.478 72.222 0.00 0.00 38.26 4.26
72 73 2.767496 CCTCCTCCCCTGCCTCTG 60.767 72.222 0.00 0.00 0.00 3.35
73 74 2.955246 TCCTCCTCCCCTGCCTCT 60.955 66.667 0.00 0.00 0.00 3.69
74 75 2.445654 CTCCTCCTCCCCTGCCTC 60.446 72.222 0.00 0.00 0.00 4.70
75 76 4.101077 CCTCCTCCTCCCCTGCCT 62.101 72.222 0.00 0.00 0.00 4.75
76 77 4.095400 TCCTCCTCCTCCCCTGCC 62.095 72.222 0.00 0.00 0.00 4.85
77 78 2.445654 CTCCTCCTCCTCCCCTGC 60.446 72.222 0.00 0.00 0.00 4.85
78 79 2.285180 CCTCCTCCTCCTCCCCTG 59.715 72.222 0.00 0.00 0.00 4.45
79 80 2.204705 ACCTCCTCCTCCTCCCCT 60.205 66.667 0.00 0.00 0.00 4.79
80 81 2.041405 CACCTCCTCCTCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
81 82 2.041405 CCACCTCCTCCTCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
82 83 1.075600 CTCCACCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
83 84 1.075600 CCTCCACCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
84 85 3.114390 CCTCCACCTCCTCCTCCT 58.886 66.667 0.00 0.00 0.00 3.69
85 86 2.766229 GCCTCCACCTCCTCCTCC 60.766 72.222 0.00 0.00 0.00 4.30
86 87 2.039624 TGCCTCCACCTCCTCCTC 59.960 66.667 0.00 0.00 0.00 3.71
87 88 2.040278 CTGCCTCCACCTCCTCCT 59.960 66.667 0.00 0.00 0.00 3.69
88 89 2.039624 TCTGCCTCCACCTCCTCC 59.960 66.667 0.00 0.00 0.00 4.30
89 90 0.616111 TTCTCTGCCTCCACCTCCTC 60.616 60.000 0.00 0.00 0.00 3.71
90 91 0.617249 CTTCTCTGCCTCCACCTCCT 60.617 60.000 0.00 0.00 0.00 3.69
91 92 0.616111 TCTTCTCTGCCTCCACCTCC 60.616 60.000 0.00 0.00 0.00 4.30
92 93 1.206849 CTTCTTCTCTGCCTCCACCTC 59.793 57.143 0.00 0.00 0.00 3.85
93 94 1.203237 TCTTCTTCTCTGCCTCCACCT 60.203 52.381 0.00 0.00 0.00 4.00
94 95 1.206849 CTCTTCTTCTCTGCCTCCACC 59.793 57.143 0.00 0.00 0.00 4.61
95 96 1.206849 CCTCTTCTTCTCTGCCTCCAC 59.793 57.143 0.00 0.00 0.00 4.02
96 97 1.566211 CCTCTTCTTCTCTGCCTCCA 58.434 55.000 0.00 0.00 0.00 3.86
97 98 0.829990 CCCTCTTCTTCTCTGCCTCC 59.170 60.000 0.00 0.00 0.00 4.30
98 99 0.829990 CCCCTCTTCTTCTCTGCCTC 59.170 60.000 0.00 0.00 0.00 4.70
99 100 1.271127 GCCCCTCTTCTTCTCTGCCT 61.271 60.000 0.00 0.00 0.00 4.75
100 101 1.223211 GCCCCTCTTCTTCTCTGCC 59.777 63.158 0.00 0.00 0.00 4.85
101 102 1.153469 CGCCCCTCTTCTTCTCTGC 60.153 63.158 0.00 0.00 0.00 4.26
102 103 0.459489 CTCGCCCCTCTTCTTCTCTG 59.541 60.000 0.00 0.00 0.00 3.35
103 104 0.333312 TCTCGCCCCTCTTCTTCTCT 59.667 55.000 0.00 0.00 0.00 3.10
104 105 0.744281 CTCTCGCCCCTCTTCTTCTC 59.256 60.000 0.00 0.00 0.00 2.87
105 106 0.686112 CCTCTCGCCCCTCTTCTTCT 60.686 60.000 0.00 0.00 0.00 2.85
106 107 1.681486 CCCTCTCGCCCCTCTTCTTC 61.681 65.000 0.00 0.00 0.00 2.87
107 108 1.687493 CCCTCTCGCCCCTCTTCTT 60.687 63.158 0.00 0.00 0.00 2.52
108 109 2.042435 CCCTCTCGCCCCTCTTCT 60.042 66.667 0.00 0.00 0.00 2.85
109 110 2.042843 TCCCTCTCGCCCCTCTTC 60.043 66.667 0.00 0.00 0.00 2.87
110 111 2.042435 CTCCCTCTCGCCCCTCTT 60.042 66.667 0.00 0.00 0.00 2.85
111 112 4.150454 CCTCCCTCTCGCCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
116 117 4.798682 TTCCCCCTCCCTCTCGCC 62.799 72.222 0.00 0.00 0.00 5.54
117 118 3.157949 CTTCCCCCTCCCTCTCGC 61.158 72.222 0.00 0.00 0.00 5.03
118 119 2.060980 CACTTCCCCCTCCCTCTCG 61.061 68.421 0.00 0.00 0.00 4.04
119 120 1.690985 CCACTTCCCCCTCCCTCTC 60.691 68.421 0.00 0.00 0.00 3.20
120 121 2.184631 TCCACTTCCCCCTCCCTCT 61.185 63.158 0.00 0.00 0.00 3.69
121 122 1.690985 CTCCACTTCCCCCTCCCTC 60.691 68.421 0.00 0.00 0.00 4.30
122 123 2.456840 CTCCACTTCCCCCTCCCT 59.543 66.667 0.00 0.00 0.00 4.20
123 124 2.692741 CCTCCACTTCCCCCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
124 125 2.125225 ACCTCCACTTCCCCCTCC 59.875 66.667 0.00 0.00 0.00 4.30
125 126 2.301738 CCACCTCCACTTCCCCCTC 61.302 68.421 0.00 0.00 0.00 4.30
126 127 2.204151 CCACCTCCACTTCCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
127 128 4.048470 GCCACCTCCACTTCCCCC 62.048 72.222 0.00 0.00 0.00 5.40
128 129 4.410400 CGCCACCTCCACTTCCCC 62.410 72.222 0.00 0.00 0.00 4.81
129 130 3.319198 TCGCCACCTCCACTTCCC 61.319 66.667 0.00 0.00 0.00 3.97
130 131 2.047179 GTCGCCACCTCCACTTCC 60.047 66.667 0.00 0.00 0.00 3.46
131 132 1.079750 GAGTCGCCACCTCCACTTC 60.080 63.158 0.00 0.00 0.00 3.01
132 133 2.932234 CGAGTCGCCACCTCCACTT 61.932 63.158 0.00 0.00 0.00 3.16
133 134 3.374402 CGAGTCGCCACCTCCACT 61.374 66.667 0.00 0.00 0.00 4.00
134 135 3.343788 CTCGAGTCGCCACCTCCAC 62.344 68.421 7.92 0.00 0.00 4.02
135 136 3.062466 CTCGAGTCGCCACCTCCA 61.062 66.667 7.92 0.00 0.00 3.86
136 137 3.827898 CCTCGAGTCGCCACCTCC 61.828 72.222 12.31 0.00 0.00 4.30
137 138 2.272918 CTTCCTCGAGTCGCCACCTC 62.273 65.000 12.31 0.00 0.00 3.85
138 139 2.282958 TTCCTCGAGTCGCCACCT 60.283 61.111 12.31 0.00 0.00 4.00
139 140 1.668101 ATCTTCCTCGAGTCGCCACC 61.668 60.000 12.31 0.00 0.00 4.61
140 141 0.526524 CATCTTCCTCGAGTCGCCAC 60.527 60.000 12.31 0.00 0.00 5.01
141 142 0.679960 TCATCTTCCTCGAGTCGCCA 60.680 55.000 12.31 0.00 0.00 5.69
142 143 0.030101 CTCATCTTCCTCGAGTCGCC 59.970 60.000 12.31 0.00 0.00 5.54
143 144 0.736053 ACTCATCTTCCTCGAGTCGC 59.264 55.000 12.31 0.00 35.02 5.19
144 145 2.010497 TCACTCATCTTCCTCGAGTCG 58.990 52.381 12.31 6.09 37.92 4.18
145 146 3.275143 TCTCACTCATCTTCCTCGAGTC 58.725 50.000 12.31 0.00 37.92 3.36
146 147 3.358111 TCTCACTCATCTTCCTCGAGT 57.642 47.619 12.31 0.00 40.60 4.18
147 148 3.004629 CCATCTCACTCATCTTCCTCGAG 59.995 52.174 5.13 5.13 0.00 4.04
148 149 2.954989 CCATCTCACTCATCTTCCTCGA 59.045 50.000 0.00 0.00 0.00 4.04
149 150 2.035704 CCCATCTCACTCATCTTCCTCG 59.964 54.545 0.00 0.00 0.00 4.63
150 151 3.303938 TCCCATCTCACTCATCTTCCTC 58.696 50.000 0.00 0.00 0.00 3.71
151 152 3.411454 TCCCATCTCACTCATCTTCCT 57.589 47.619 0.00 0.00 0.00 3.36
152 153 3.708631 TCTTCCCATCTCACTCATCTTCC 59.291 47.826 0.00 0.00 0.00 3.46
153 154 5.549742 ATCTTCCCATCTCACTCATCTTC 57.450 43.478 0.00 0.00 0.00 2.87
154 155 5.010516 CGTATCTTCCCATCTCACTCATCTT 59.989 44.000 0.00 0.00 0.00 2.40
155 156 4.522405 CGTATCTTCCCATCTCACTCATCT 59.478 45.833 0.00 0.00 0.00 2.90
156 157 4.520874 TCGTATCTTCCCATCTCACTCATC 59.479 45.833 0.00 0.00 0.00 2.92
157 158 4.474394 TCGTATCTTCCCATCTCACTCAT 58.526 43.478 0.00 0.00 0.00 2.90
158 159 3.885901 CTCGTATCTTCCCATCTCACTCA 59.114 47.826 0.00 0.00 0.00 3.41
159 160 3.254657 CCTCGTATCTTCCCATCTCACTC 59.745 52.174 0.00 0.00 0.00 3.51
160 161 3.226777 CCTCGTATCTTCCCATCTCACT 58.773 50.000 0.00 0.00 0.00 3.41
161 162 2.297597 CCCTCGTATCTTCCCATCTCAC 59.702 54.545 0.00 0.00 0.00 3.51
162 163 2.177016 TCCCTCGTATCTTCCCATCTCA 59.823 50.000 0.00 0.00 0.00 3.27
163 164 2.877866 TCCCTCGTATCTTCCCATCTC 58.122 52.381 0.00 0.00 0.00 2.75
164 165 3.330126 TTCCCTCGTATCTTCCCATCT 57.670 47.619 0.00 0.00 0.00 2.90
165 166 3.641906 TCTTTCCCTCGTATCTTCCCATC 59.358 47.826 0.00 0.00 0.00 3.51
166 167 3.654273 TCTTTCCCTCGTATCTTCCCAT 58.346 45.455 0.00 0.00 0.00 4.00
167 168 3.110293 TCTTTCCCTCGTATCTTCCCA 57.890 47.619 0.00 0.00 0.00 4.37
168 169 3.244249 CCATCTTTCCCTCGTATCTTCCC 60.244 52.174 0.00 0.00 0.00 3.97
169 170 3.244249 CCCATCTTTCCCTCGTATCTTCC 60.244 52.174 0.00 0.00 0.00 3.46
170 171 3.641906 TCCCATCTTTCCCTCGTATCTTC 59.358 47.826 0.00 0.00 0.00 2.87
171 172 3.643792 CTCCCATCTTTCCCTCGTATCTT 59.356 47.826 0.00 0.00 0.00 2.40
172 173 3.117093 TCTCCCATCTTTCCCTCGTATCT 60.117 47.826 0.00 0.00 0.00 1.98
173 174 3.231818 TCTCCCATCTTTCCCTCGTATC 58.768 50.000 0.00 0.00 0.00 2.24
174 175 3.330126 TCTCCCATCTTTCCCTCGTAT 57.670 47.619 0.00 0.00 0.00 3.06
175 176 2.840640 TCTCCCATCTTTCCCTCGTA 57.159 50.000 0.00 0.00 0.00 3.43
176 177 2.182516 ATCTCCCATCTTTCCCTCGT 57.817 50.000 0.00 0.00 0.00 4.18
177 178 4.899352 AATATCTCCCATCTTTCCCTCG 57.101 45.455 0.00 0.00 0.00 4.63
178 179 6.488344 GTGAAAATATCTCCCATCTTTCCCTC 59.512 42.308 0.00 0.00 0.00 4.30
179 180 6.068853 TGTGAAAATATCTCCCATCTTTCCCT 60.069 38.462 0.00 0.00 0.00 4.20
180 181 6.129179 TGTGAAAATATCTCCCATCTTTCCC 58.871 40.000 0.00 0.00 0.00 3.97
181 182 6.264067 CCTGTGAAAATATCTCCCATCTTTCC 59.736 42.308 0.00 0.00 0.00 3.13
182 183 7.056635 TCCTGTGAAAATATCTCCCATCTTTC 58.943 38.462 0.00 0.00 0.00 2.62
183 184 6.973642 TCCTGTGAAAATATCTCCCATCTTT 58.026 36.000 0.00 0.00 0.00 2.52
184 185 6.388100 TCTCCTGTGAAAATATCTCCCATCTT 59.612 38.462 0.00 0.00 0.00 2.40
185 186 5.907662 TCTCCTGTGAAAATATCTCCCATCT 59.092 40.000 0.00 0.00 0.00 2.90
186 187 6.042552 TCTCTCCTGTGAAAATATCTCCCATC 59.957 42.308 0.00 0.00 0.00 3.51
187 188 5.907662 TCTCTCCTGTGAAAATATCTCCCAT 59.092 40.000 0.00 0.00 0.00 4.00
188 189 5.280499 TCTCTCCTGTGAAAATATCTCCCA 58.720 41.667 0.00 0.00 0.00 4.37
189 190 5.600484 TCTCTCTCCTGTGAAAATATCTCCC 59.400 44.000 0.00 0.00 0.00 4.30
190 191 6.549364 TCTCTCTCTCCTGTGAAAATATCTCC 59.451 42.308 0.00 0.00 0.00 3.71
191 192 7.502226 TCTCTCTCTCTCCTGTGAAAATATCTC 59.498 40.741 0.00 0.00 0.00 2.75
192 193 7.353525 TCTCTCTCTCTCCTGTGAAAATATCT 58.646 38.462 0.00 0.00 0.00 1.98
193 194 7.502226 TCTCTCTCTCTCTCCTGTGAAAATATC 59.498 40.741 0.00 0.00 0.00 1.63
194 195 7.353525 TCTCTCTCTCTCTCCTGTGAAAATAT 58.646 38.462 0.00 0.00 0.00 1.28
195 196 6.726379 TCTCTCTCTCTCTCCTGTGAAAATA 58.274 40.000 0.00 0.00 0.00 1.40
196 197 5.579047 TCTCTCTCTCTCTCCTGTGAAAAT 58.421 41.667 0.00 0.00 0.00 1.82
197 198 4.991776 TCTCTCTCTCTCTCCTGTGAAAA 58.008 43.478 0.00 0.00 0.00 2.29
198 199 4.567537 CCTCTCTCTCTCTCTCCTGTGAAA 60.568 50.000 0.00 0.00 0.00 2.69
199 200 3.054434 CCTCTCTCTCTCTCTCCTGTGAA 60.054 52.174 0.00 0.00 0.00 3.18
200 201 2.505407 CCTCTCTCTCTCTCTCCTGTGA 59.495 54.545 0.00 0.00 0.00 3.58
201 202 2.505407 TCCTCTCTCTCTCTCTCCTGTG 59.495 54.545 0.00 0.00 0.00 3.66
202 203 2.845659 TCCTCTCTCTCTCTCTCCTGT 58.154 52.381 0.00 0.00 0.00 4.00
203 204 3.392285 TCATCCTCTCTCTCTCTCTCCTG 59.608 52.174 0.00 0.00 0.00 3.86
204 205 3.392616 GTCATCCTCTCTCTCTCTCTCCT 59.607 52.174 0.00 0.00 0.00 3.69
205 206 3.744660 GTCATCCTCTCTCTCTCTCTCC 58.255 54.545 0.00 0.00 0.00 3.71
206 207 3.069586 TCGTCATCCTCTCTCTCTCTCTC 59.930 52.174 0.00 0.00 0.00 3.20
207 208 3.038280 TCGTCATCCTCTCTCTCTCTCT 58.962 50.000 0.00 0.00 0.00 3.10
208 209 3.393800 CTCGTCATCCTCTCTCTCTCTC 58.606 54.545 0.00 0.00 0.00 3.20
209 210 2.104792 CCTCGTCATCCTCTCTCTCTCT 59.895 54.545 0.00 0.00 0.00 3.10
210 211 2.494059 CCTCGTCATCCTCTCTCTCTC 58.506 57.143 0.00 0.00 0.00 3.20
211 212 1.142870 CCCTCGTCATCCTCTCTCTCT 59.857 57.143 0.00 0.00 0.00 3.10
212 213 1.142060 TCCCTCGTCATCCTCTCTCTC 59.858 57.143 0.00 0.00 0.00 3.20
213 214 1.142870 CTCCCTCGTCATCCTCTCTCT 59.857 57.143 0.00 0.00 0.00 3.10
214 215 1.142060 TCTCCCTCGTCATCCTCTCTC 59.858 57.143 0.00 0.00 0.00 3.20
215 216 1.217916 TCTCCCTCGTCATCCTCTCT 58.782 55.000 0.00 0.00 0.00 3.10
216 217 2.286365 ATCTCCCTCGTCATCCTCTC 57.714 55.000 0.00 0.00 0.00 3.20
217 218 4.396357 AATATCTCCCTCGTCATCCTCT 57.604 45.455 0.00 0.00 0.00 3.69
218 219 5.011125 TGAAAATATCTCCCTCGTCATCCTC 59.989 44.000 0.00 0.00 0.00 3.71
219 220 4.901849 TGAAAATATCTCCCTCGTCATCCT 59.098 41.667 0.00 0.00 0.00 3.24
220 221 5.215252 TGAAAATATCTCCCTCGTCATCC 57.785 43.478 0.00 0.00 0.00 3.51
226 227 3.589988 CGGGATGAAAATATCTCCCTCG 58.410 50.000 5.04 0.00 40.56 4.63
245 246 0.462047 ATTAGCGACCAAGAAGGCGG 60.462 55.000 0.00 0.00 43.14 6.13
246 247 0.931005 GATTAGCGACCAAGAAGGCG 59.069 55.000 0.00 0.00 43.14 5.52
256 261 7.329717 CCTTTCTGTATTGGATAGATTAGCGAC 59.670 40.741 0.00 0.00 0.00 5.19
266 271 5.708736 TTGCCTCCTTTCTGTATTGGATA 57.291 39.130 0.00 0.00 0.00 2.59
272 277 4.985538 TGAGTTTTGCCTCCTTTCTGTAT 58.014 39.130 0.00 0.00 0.00 2.29
273 278 4.431416 TGAGTTTTGCCTCCTTTCTGTA 57.569 40.909 0.00 0.00 0.00 2.74
276 281 4.202503 TGAGATGAGTTTTGCCTCCTTTCT 60.203 41.667 0.00 0.00 0.00 2.52
286 291 3.614176 TCGAGCGAATGAGATGAGTTTTG 59.386 43.478 0.00 0.00 0.00 2.44
313 318 2.285977 CAATTGGGCCTCGTTACCTAC 58.714 52.381 4.53 0.00 0.00 3.18
350 355 5.279256 CCCTCCGTTTTTACATCCATGTTTT 60.279 40.000 0.00 0.00 41.97 2.43
355 360 3.617284 GTCCCTCCGTTTTTACATCCAT 58.383 45.455 0.00 0.00 0.00 3.41
356 361 2.613474 CGTCCCTCCGTTTTTACATCCA 60.613 50.000 0.00 0.00 0.00 3.41
376 382 1.621301 CGCTGTCAAAGGCTCAGTCG 61.621 60.000 3.28 3.91 0.00 4.18
378 384 1.963338 GCGCTGTCAAAGGCTCAGT 60.963 57.895 0.00 0.00 0.00 3.41
380 386 2.669569 GGCGCTGTCAAAGGCTCA 60.670 61.111 7.64 0.00 0.00 4.26
384 390 0.589223 TTTTACGGCGCTGTCAAAGG 59.411 50.000 28.15 0.00 0.00 3.11
396 402 0.872388 AGCCTTCGCACTTTTTACGG 59.128 50.000 0.00 0.00 37.52 4.02
407 413 1.009829 CACAATCTACCAGCCTTCGC 58.990 55.000 0.00 0.00 0.00 4.70
408 414 2.002586 CACACAATCTACCAGCCTTCG 58.997 52.381 0.00 0.00 0.00 3.79
412 418 3.059352 AGTTCACACAATCTACCAGCC 57.941 47.619 0.00 0.00 0.00 4.85
423 429 2.547218 GCCGTTCCTTCTAGTTCACACA 60.547 50.000 0.00 0.00 0.00 3.72
427 433 0.245539 CGGCCGTTCCTTCTAGTTCA 59.754 55.000 19.50 0.00 0.00 3.18
432 438 0.680618 TTTGTCGGCCGTTCCTTCTA 59.319 50.000 27.15 0.00 0.00 2.10
441 447 2.509336 AGCGATCTTTGTCGGCCG 60.509 61.111 22.12 22.12 41.72 6.13
478 484 7.656137 CACTAATTTCTCCTATAAAAGGCGCTA 59.344 37.037 7.64 0.00 46.10 4.26
479 485 6.483640 CACTAATTTCTCCTATAAAAGGCGCT 59.516 38.462 7.64 0.00 46.10 5.92
498 504 9.916360 CTCCTACCCCTAAAATAAAACACTAAT 57.084 33.333 0.00 0.00 0.00 1.73
499 505 9.114938 TCTCCTACCCCTAAAATAAAACACTAA 57.885 33.333 0.00 0.00 0.00 2.24
500 506 8.683776 TCTCCTACCCCTAAAATAAAACACTA 57.316 34.615 0.00 0.00 0.00 2.74
501 507 7.578458 TCTCCTACCCCTAAAATAAAACACT 57.422 36.000 0.00 0.00 0.00 3.55
502 508 8.640063 TTTCTCCTACCCCTAAAATAAAACAC 57.360 34.615 0.00 0.00 0.00 3.32
503 509 9.831682 AATTTCTCCTACCCCTAAAATAAAACA 57.168 29.630 0.00 0.00 0.00 2.83
510 516 9.640952 CATCAATAATTTCTCCTACCCCTAAAA 57.359 33.333 0.00 0.00 0.00 1.52
511 517 9.009675 TCATCAATAATTTCTCCTACCCCTAAA 57.990 33.333 0.00 0.00 0.00 1.85
512 518 8.575736 TCATCAATAATTTCTCCTACCCCTAA 57.424 34.615 0.00 0.00 0.00 2.69
513 519 8.757307 ATCATCAATAATTTCTCCTACCCCTA 57.243 34.615 0.00 0.00 0.00 3.53
514 520 7.257199 GGATCATCAATAATTTCTCCTACCCCT 60.257 40.741 0.00 0.00 0.00 4.79
515 521 6.887002 GGATCATCAATAATTTCTCCTACCCC 59.113 42.308 0.00 0.00 0.00 4.95
516 522 6.887002 GGGATCATCAATAATTTCTCCTACCC 59.113 42.308 0.00 0.00 0.00 3.69
517 523 7.461749 TGGGATCATCAATAATTTCTCCTACC 58.538 38.462 0.00 0.00 0.00 3.18
518 524 8.924511 TTGGGATCATCAATAATTTCTCCTAC 57.075 34.615 0.00 0.00 0.00 3.18
550 556 8.357402 AGTTTCTTCGCACCAGTTTATTTTATT 58.643 29.630 0.00 0.00 0.00 1.40
551 557 7.882179 AGTTTCTTCGCACCAGTTTATTTTAT 58.118 30.769 0.00 0.00 0.00 1.40
552 558 7.266922 AGTTTCTTCGCACCAGTTTATTTTA 57.733 32.000 0.00 0.00 0.00 1.52
553 559 6.144078 AGTTTCTTCGCACCAGTTTATTTT 57.856 33.333 0.00 0.00 0.00 1.82
554 560 5.767816 AGTTTCTTCGCACCAGTTTATTT 57.232 34.783 0.00 0.00 0.00 1.40
555 561 5.180680 GGTAGTTTCTTCGCACCAGTTTATT 59.819 40.000 0.00 0.00 0.00 1.40
556 562 4.694037 GGTAGTTTCTTCGCACCAGTTTAT 59.306 41.667 0.00 0.00 0.00 1.40
557 563 4.060205 GGTAGTTTCTTCGCACCAGTTTA 58.940 43.478 0.00 0.00 0.00 2.01
593 3000 0.670546 CCTACACCGTTCAGCTGTGG 60.671 60.000 14.67 16.14 36.75 4.17
605 3012 1.883084 CCGCTGATTCGCCTACACC 60.883 63.158 0.00 0.00 0.00 4.16
640 3052 2.202878 GAGCGCGGATGGTAAGCA 60.203 61.111 8.83 0.00 0.00 3.91
872 3285 3.458163 CGGCTCCGGCTCACCTTA 61.458 66.667 0.00 0.00 38.73 2.69
919 3332 3.176708 GAGTCAGCGTGCGTTATTAGAA 58.823 45.455 0.00 0.00 0.00 2.10
1414 3827 8.250332 TGAGTTAACTGCTTGAACAAAAGAAAT 58.750 29.630 14.14 0.00 0.00 2.17
1650 4063 3.859411 AAAGAAAACGGTGACTTTGCA 57.141 38.095 4.68 0.00 32.49 4.08
1668 4081 2.754552 CTGGGCATGCTGCTACTAAAAA 59.245 45.455 18.92 0.00 44.28 1.94
1669 4082 2.368439 CTGGGCATGCTGCTACTAAAA 58.632 47.619 18.92 0.00 44.28 1.52
1670 4083 2.018644 GCTGGGCATGCTGCTACTAAA 61.019 52.381 18.92 0.00 44.28 1.85
1671 4084 0.464373 GCTGGGCATGCTGCTACTAA 60.464 55.000 18.92 0.00 44.28 2.24
1672 4085 1.146930 GCTGGGCATGCTGCTACTA 59.853 57.895 18.92 0.00 44.28 1.82
1673 4086 2.124403 GCTGGGCATGCTGCTACT 60.124 61.111 18.92 0.00 44.28 2.57
1674 4087 3.214845 GGCTGGGCATGCTGCTAC 61.215 66.667 18.92 0.00 44.28 3.58
1675 4088 3.709348 CTGGCTGGGCATGCTGCTA 62.709 63.158 18.92 15.64 44.28 3.49
1678 4091 2.280552 AAACTGGCTGGGCATGCTG 61.281 57.895 18.92 9.43 0.00 4.41
1679 4092 2.118951 AAACTGGCTGGGCATGCT 59.881 55.556 18.92 0.00 0.00 3.79
1680 4093 2.263540 CAAACTGGCTGGGCATGC 59.736 61.111 9.90 9.90 0.00 4.06
1681 4094 1.823169 AAGCAAACTGGCTGGGCATG 61.823 55.000 0.00 0.00 45.07 4.06
1682 4095 1.123246 AAAGCAAACTGGCTGGGCAT 61.123 50.000 0.00 0.00 45.07 4.40
1683 4096 1.336632 AAAAGCAAACTGGCTGGGCA 61.337 50.000 0.00 0.00 45.07 5.36
1684 4097 0.179048 AAAAAGCAAACTGGCTGGGC 60.179 50.000 0.00 0.00 45.07 5.36
1685 4098 2.365293 ACTAAAAAGCAAACTGGCTGGG 59.635 45.455 0.00 0.00 45.07 4.45
1686 4099 3.733443 ACTAAAAAGCAAACTGGCTGG 57.267 42.857 0.00 0.00 45.07 4.85
1687 4100 4.229876 GCTACTAAAAAGCAAACTGGCTG 58.770 43.478 0.00 0.00 45.07 4.85
1688 4101 3.888930 TGCTACTAAAAAGCAAACTGGCT 59.111 39.130 0.00 0.00 46.57 4.75
1689 4102 4.237349 TGCTACTAAAAAGCAAACTGGC 57.763 40.909 0.00 0.00 46.57 4.85
1697 4110 2.480244 GGGCATGCTGCTACTAAAAAGC 60.480 50.000 18.92 0.00 44.28 3.51
1698 4111 2.754552 TGGGCATGCTGCTACTAAAAAG 59.245 45.455 18.92 0.00 44.28 2.27
1739 4188 9.589461 AAAGATATGCTAGCCTTTCTAGTAGTA 57.411 33.333 13.29 0.00 45.22 1.82
1740 4189 8.364142 CAAAGATATGCTAGCCTTTCTAGTAGT 58.636 37.037 13.29 0.00 45.22 2.73
1741 4190 8.364142 ACAAAGATATGCTAGCCTTTCTAGTAG 58.636 37.037 13.29 4.26 45.22 2.57
1742 4191 8.144478 CACAAAGATATGCTAGCCTTTCTAGTA 58.856 37.037 13.29 0.00 45.22 1.82
1743 4192 6.989169 CACAAAGATATGCTAGCCTTTCTAGT 59.011 38.462 13.29 11.33 45.22 2.57
1784 4233 4.526970 AGTGAGGCTTCAGAAGAACAAAA 58.473 39.130 14.86 0.00 32.98 2.44
1788 4237 5.241662 ACATTAGTGAGGCTTCAGAAGAAC 58.758 41.667 14.86 5.81 32.98 3.01
1863 4312 8.237267 GTCCTGAAATCTACAATACCAAACTTG 58.763 37.037 0.00 0.00 0.00 3.16
2114 4571 4.082081 CCAAGAATGCTGTATGGCTCAAAA 60.082 41.667 0.00 0.00 0.00 2.44
2141 4598 1.213926 GATTCTGATGCCCCTGGTTCT 59.786 52.381 0.00 0.00 0.00 3.01
2174 4631 6.770785 ACTGAATAGAGAGTCTCCTGTATGAC 59.229 42.308 16.74 7.25 0.00 3.06
2479 4936 9.330063 CATGTTAGCTTCAGATGTTATAGGAAA 57.670 33.333 0.00 0.00 0.00 3.13
2922 5380 4.973168 TGACAGGAGTGCTTCACTTTAAT 58.027 39.130 0.66 0.00 45.44 1.40
2955 5413 1.588404 CTTATGGCACTGTTAGTCGCG 59.412 52.381 0.00 0.00 0.00 5.87
3075 5533 9.706691 CAACTAGTAATCAGACAGGTAAGAAAA 57.293 33.333 0.00 0.00 0.00 2.29
3079 5537 6.574350 CCCAACTAGTAATCAGACAGGTAAG 58.426 44.000 0.00 0.00 0.00 2.34
3158 5620 9.533253 AAATCTTATCATCCAAAATTAAAGGCG 57.467 29.630 0.00 0.00 0.00 5.52
3325 5787 8.047310 AGAACCCGTAATTCATAACAGAAGATT 58.953 33.333 0.00 0.00 0.00 2.40
3344 5807 6.753107 AATATGGTAAAACTGAAGAACCCG 57.247 37.500 0.00 0.00 0.00 5.28
3364 5827 8.196771 GCAACCAATAGTTCCATTGATCAAATA 58.803 33.333 13.09 0.00 38.01 1.40
3535 5998 3.025924 CCAGAACTTGGCTTGCTCA 57.974 52.632 0.00 0.00 40.87 4.26
3627 6090 5.841957 ATACAAGCATCAAGGATTTGTCC 57.158 39.130 0.89 0.00 35.73 4.02
3993 6458 1.079127 CAGGCCACGTTCTAGGGTG 60.079 63.158 5.01 0.00 0.00 4.61
3994 6459 2.291043 CCAGGCCACGTTCTAGGGT 61.291 63.158 5.01 0.00 0.00 4.34
3995 6460 1.961180 CTCCAGGCCACGTTCTAGGG 61.961 65.000 5.01 0.00 0.00 3.53
3996 6461 1.517832 CTCCAGGCCACGTTCTAGG 59.482 63.158 5.01 0.00 0.00 3.02
3997 6462 1.153549 GCTCCAGGCCACGTTCTAG 60.154 63.158 5.01 0.00 34.27 2.43
3998 6463 2.978824 GCTCCAGGCCACGTTCTA 59.021 61.111 5.01 0.00 34.27 2.10
4016 6481 1.495951 GTTTGTAAGCCGGAGCACG 59.504 57.895 5.05 0.00 43.56 5.34
4150 6615 4.284550 GGCAGGTGTGGAAGCCCA 62.285 66.667 0.00 0.00 41.25 5.36
4168 6633 3.002583 TCTGGTGCATGGCCTCGA 61.003 61.111 3.32 0.00 0.00 4.04
4176 6641 1.518056 CGTTGGCTTGTCTGGTGCAT 61.518 55.000 0.00 0.00 0.00 3.96
4388 6854 2.427245 AAGGCTAGAGCGGCATCGT 61.427 57.895 1.45 0.00 43.26 3.73
4389 6855 1.953138 CAAGGCTAGAGCGGCATCG 60.953 63.158 1.45 0.00 43.26 3.84
4391 6857 2.507944 CCAAGGCTAGAGCGGCAT 59.492 61.111 1.45 0.00 43.26 4.40
4392 6858 4.473520 GCCAAGGCTAGAGCGGCA 62.474 66.667 12.41 0.00 42.26 5.69
4400 6880 1.612442 AGTTCTCCGGCCAAGGCTA 60.612 57.895 11.40 0.00 41.60 3.93
4401 6881 2.930562 AGTTCTCCGGCCAAGGCT 60.931 61.111 11.40 0.00 41.60 4.58
4427 6908 1.490490 TGTGGAGCCCCTTCATCATAC 59.510 52.381 0.00 0.00 0.00 2.39
4487 6978 1.006832 CCAACCCGATCGATGTTGAC 58.993 55.000 33.19 0.53 41.38 3.18
4589 7080 0.038343 GGCGGCATGTTGTTTGTGAT 60.038 50.000 3.07 0.00 0.00 3.06
4639 7130 6.183360 GGTTCTTAGAGGTTGACTATATGCCA 60.183 42.308 0.00 0.00 0.00 4.92
4655 7146 1.689813 TCTTGCGTGGTGGTTCTTAGA 59.310 47.619 0.00 0.00 0.00 2.10
4657 7148 1.139256 TGTCTTGCGTGGTGGTTCTTA 59.861 47.619 0.00 0.00 0.00 2.10
4661 7152 0.678366 TTGTGTCTTGCGTGGTGGTT 60.678 50.000 0.00 0.00 0.00 3.67
4669 7160 0.453950 GATGCAGCTTGTGTCTTGCG 60.454 55.000 0.00 0.00 0.00 4.85
4706 7197 1.002033 GCTTCTTGCAGGTTGACACAG 60.002 52.381 0.00 0.00 42.31 3.66
4717 7208 4.623814 CCGATCTGGCTTCTTGCA 57.376 55.556 0.00 0.00 45.15 4.08
4849 7340 2.124736 GGACGGCTTATGGCAGCA 60.125 61.111 0.00 0.00 42.10 4.41
4938 7429 1.219213 AGTATGGGGAGAGGAGACAGG 59.781 57.143 0.00 0.00 0.00 4.00
5088 7587 4.082245 GGCACAACAGTTAATTGTAGCCAT 60.082 41.667 24.47 2.89 44.65 4.40
5090 7589 3.254657 TGGCACAACAGTTAATTGTAGCC 59.745 43.478 23.49 23.49 45.03 3.93
5146 7645 2.076100 TGTGTAAGCTTGAATGGCTCG 58.924 47.619 9.86 0.00 39.30 5.03
5315 8144 7.518052 CGGTTTATTGTGTTAACTACGACCAAA 60.518 37.037 7.22 5.46 0.00 3.28
5563 8396 1.153489 CATCTGTGAGGCAGGGTCG 60.153 63.158 0.00 0.00 45.08 4.79
5621 8454 8.015658 ACACAGAAAATCAAGCGAAAGTATTAC 58.984 33.333 0.00 0.00 0.00 1.89
5719 8552 3.902150 GCATCATGCATTTGGATCTCAG 58.098 45.455 4.20 0.00 44.26 3.35
5815 8648 7.007723 TCCCCTTCTTTTATTGAAGCACTAAA 58.992 34.615 0.00 0.00 39.47 1.85
5816 8649 6.548321 TCCCCTTCTTTTATTGAAGCACTAA 58.452 36.000 0.00 0.00 39.47 2.24
5840 8673 5.841957 ACAGAGTGCAACAAAGAAATTCT 57.158 34.783 0.00 0.00 41.43 2.40
5911 8744 9.167311 GGCATCAAATACTAAGAAGAAGAAGAA 57.833 33.333 0.00 0.00 0.00 2.52
5912 8745 8.543774 AGGCATCAAATACTAAGAAGAAGAAGA 58.456 33.333 0.00 0.00 0.00 2.87
5913 8746 8.729805 AGGCATCAAATACTAAGAAGAAGAAG 57.270 34.615 0.00 0.00 0.00 2.85
6286 9119 7.136822 TGGTGGCAGATCTTATAACAAGTAT 57.863 36.000 0.00 0.00 0.00 2.12
6313 9146 5.473504 ACACTAGTCATCCATGGTCAAAAAC 59.526 40.000 12.58 3.26 0.00 2.43
6412 9245 4.932200 ACTGACAGAATTCATTCCGAGTTC 59.068 41.667 10.08 0.00 39.91 3.01
6561 9396 4.089408 TCACCTTACCGCCTTAAAAACT 57.911 40.909 0.00 0.00 0.00 2.66
6984 9955 2.604174 AAAGTTCGCGTTCTGGCCG 61.604 57.895 5.77 0.00 0.00 6.13
6996 9967 3.365364 CCAACGATCCAGCTTCAAAGTTC 60.365 47.826 0.00 0.00 0.00 3.01
6997 9968 2.554032 CCAACGATCCAGCTTCAAAGTT 59.446 45.455 0.00 0.00 0.00 2.66
7014 9985 4.202245 TGGTGAGTTAGCTACATCCAAC 57.798 45.455 0.00 0.00 0.00 3.77
7259 10230 3.448093 TTTCCATTGCCATCAGTGGTA 57.552 42.857 6.70 0.00 46.61 3.25
7452 10423 6.430451 CAAAAGTTCACTCTGCTTTTCGTAT 58.570 36.000 0.00 0.00 39.51 3.06
7784 10765 1.685820 GGGAAGGGCAGCAGTTAGT 59.314 57.895 0.00 0.00 0.00 2.24
8034 11015 0.187117 TGGAACTTGCCCATCACCAA 59.813 50.000 0.00 0.00 0.00 3.67
8303 11287 1.892209 CTCCGTTTGCAACCTTACCT 58.108 50.000 0.00 0.00 0.00 3.08
8450 11434 7.172361 GCTCTATAAGTTGATGGGAGATGTTTC 59.828 40.741 0.00 0.00 0.00 2.78
8501 11485 7.436673 ACAGCGCAAGAATAATAAACAAAACAA 59.563 29.630 11.47 0.00 43.02 2.83
8502 11486 6.920758 ACAGCGCAAGAATAATAAACAAAACA 59.079 30.769 11.47 0.00 43.02 2.83
8656 11918 2.910544 TGGAAGGTTAGCCTAACTCCA 58.089 47.619 17.26 17.26 46.33 3.86
8693 11955 5.580297 CGGCTACAAATTTTATGGTTGCAAT 59.420 36.000 0.59 0.00 34.46 3.56
8789 12176 3.605634 CGGAAATGGGACTGTTGATACA 58.394 45.455 0.00 0.00 0.00 2.29
8809 12198 6.599437 ACTCTTTTGAAATCGTGAATAACCG 58.401 36.000 0.00 0.00 0.00 4.44
8863 12252 6.313658 GTGCTCAGTGGAAAAGAAAAACAAAT 59.686 34.615 0.00 0.00 0.00 2.32
9004 12393 9.095700 TCAATGCCCCCTTATAATTTTATAACC 57.904 33.333 0.00 0.00 33.40 2.85
9006 12395 9.890915 AGTCAATGCCCCCTTATAATTTTATAA 57.109 29.630 3.46 3.46 35.12 0.98
9009 12398 7.289084 GGAAGTCAATGCCCCCTTATAATTTTA 59.711 37.037 0.00 0.00 0.00 1.52
9014 12403 3.117284 GGGAAGTCAATGCCCCCTTATAA 60.117 47.826 0.00 0.00 35.76 0.98
9049 12438 0.170561 GCACTGGCAGAGCTTCATTG 59.829 55.000 26.50 10.91 40.72 2.82
9071 12460 1.635487 CAAGGGAAGAACCATCCTCCA 59.365 52.381 0.00 0.00 37.84 3.86
9080 12469 1.961394 GTTTGGGACCAAGGGAAGAAC 59.039 52.381 3.73 0.00 37.24 3.01
9092 12481 7.170998 CAGTATTATCGTCAATAGGTTTGGGAC 59.829 40.741 0.00 0.00 0.00 4.46
9106 12495 9.609950 GGTAGTTCTGTTATCAGTATTATCGTC 57.390 37.037 0.83 0.00 41.91 4.20
9107 12496 9.352191 AGGTAGTTCTGTTATCAGTATTATCGT 57.648 33.333 0.83 0.00 41.91 3.73
9112 12501 9.490083 ACCTAAGGTAGTTCTGTTATCAGTATT 57.510 33.333 0.83 0.00 37.27 1.89
9114 12503 9.401058 GTACCTAAGGTAGTTCTGTTATCAGTA 57.599 37.037 0.00 0.00 39.02 2.74
9115 12504 7.066766 CGTACCTAAGGTAGTTCTGTTATCAGT 59.933 40.741 0.00 0.00 39.02 3.41
9116 12505 7.281774 TCGTACCTAAGGTAGTTCTGTTATCAG 59.718 40.741 0.00 0.00 39.02 2.90
9117 12506 7.066284 GTCGTACCTAAGGTAGTTCTGTTATCA 59.934 40.741 0.00 0.00 39.02 2.15
9118 12507 7.281999 AGTCGTACCTAAGGTAGTTCTGTTATC 59.718 40.741 0.00 0.00 39.02 1.75
9119 12508 7.066766 CAGTCGTACCTAAGGTAGTTCTGTTAT 59.933 40.741 0.00 0.00 39.02 1.89
9120 12509 6.372659 CAGTCGTACCTAAGGTAGTTCTGTTA 59.627 42.308 0.00 0.00 39.02 2.41
9121 12510 5.182760 CAGTCGTACCTAAGGTAGTTCTGTT 59.817 44.000 0.00 0.00 39.02 3.16
9122 12511 4.699257 CAGTCGTACCTAAGGTAGTTCTGT 59.301 45.833 0.00 0.00 39.02 3.41
9123 12512 4.699257 ACAGTCGTACCTAAGGTAGTTCTG 59.301 45.833 0.45 0.45 39.02 3.02
9124 12513 4.916183 ACAGTCGTACCTAAGGTAGTTCT 58.084 43.478 0.00 0.00 39.02 3.01
9125 12514 5.635417 AACAGTCGTACCTAAGGTAGTTC 57.365 43.478 0.00 0.00 39.02 3.01
9126 12515 6.410942 AAAACAGTCGTACCTAAGGTAGTT 57.589 37.500 0.00 0.00 39.02 2.24
9127 12516 5.335191 CGAAAACAGTCGTACCTAAGGTAGT 60.335 44.000 0.00 0.00 39.02 2.73
9128 12517 5.091431 CGAAAACAGTCGTACCTAAGGTAG 58.909 45.833 0.00 0.00 39.02 3.18
9129 12518 5.046910 CGAAAACAGTCGTACCTAAGGTA 57.953 43.478 0.00 0.00 36.26 3.08
9130 12519 3.905784 CGAAAACAGTCGTACCTAAGGT 58.094 45.455 0.00 0.00 36.26 3.50
9144 12533 4.175516 GGTACATCCATCGTACGAAAACA 58.824 43.478 23.56 7.03 40.13 2.83
9151 12540 2.212869 TTGCGGTACATCCATCGTAC 57.787 50.000 0.00 0.00 38.80 3.67
9229 12618 2.636647 TCATCATTTGCCATCCGCTA 57.363 45.000 0.00 0.00 38.78 4.26
9231 12620 2.806608 ATTCATCATTTGCCATCCGC 57.193 45.000 0.00 0.00 38.31 5.54
9238 12627 8.781067 TGCGTACTATAAAATTCATCATTTGC 57.219 30.769 0.00 0.00 35.09 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.