Multiple sequence alignment - TraesCS2D01G271200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G271200 chr2D 100.000 2597 0 0 1 2597 334232149 334229553 0.000000e+00 4796.0
1 TraesCS2D01G271200 chr1D 98.407 1569 21 3 1031 2596 483915977 483917544 0.000000e+00 2756.0
2 TraesCS2D01G271200 chr1D 97.895 1568 25 6 1031 2596 254496632 254495071 0.000000e+00 2706.0
3 TraesCS2D01G271200 chr1D 95.037 544 9 2 1031 1556 19956660 19956117 0.000000e+00 839.0
4 TraesCS2D01G271200 chr1D 96.708 486 15 1 12 497 353269041 353269525 0.000000e+00 808.0
5 TraesCS2D01G271200 chr1D 97.297 74 0 2 2338 2409 226012555 226012628 9.760000e-25 124.0
6 TraesCS2D01G271200 chr1D 100.000 35 0 0 2562 2596 295641189 295641155 6.000000e-07 65.8
7 TraesCS2D01G271200 chr5D 98.343 1569 22 3 1031 2596 240136331 240134764 0.000000e+00 2750.0
8 TraesCS2D01G271200 chr5D 97.704 1568 29 5 1031 2596 6202653 6204215 0.000000e+00 2689.0
9 TraesCS2D01G271200 chr5D 97.525 808 14 5 1792 2596 449151290 449152094 0.000000e+00 1376.0
10 TraesCS2D01G271200 chr5D 96.914 486 15 0 12 497 353566715 353566230 0.000000e+00 815.0
11 TraesCS2D01G271200 chr5D 96.708 486 16 0 12 497 459452 458967 0.000000e+00 809.0
12 TraesCS2D01G271200 chr5D 96.502 486 17 0 12 497 256664093 256663608 0.000000e+00 804.0
13 TraesCS2D01G271200 chr5D 92.829 516 22 12 496 1006 292574112 292573607 0.000000e+00 734.0
14 TraesCS2D01G271200 chr5D 96.825 63 1 1 1230 1291 44770220 44770282 1.270000e-18 104.0
15 TraesCS2D01G271200 chr3B 98.088 1569 25 4 1031 2596 201511753 201510187 0.000000e+00 2726.0
16 TraesCS2D01G271200 chr4D 95.796 1570 56 8 1032 2596 19915122 19913558 0.000000e+00 2525.0
17 TraesCS2D01G271200 chr4D 96.914 486 15 0 12 497 355736170 355735685 0.000000e+00 815.0
18 TraesCS2D01G271200 chr4D 97.351 151 1 3 2255 2402 236302684 236302834 1.190000e-63 254.0
19 TraesCS2D01G271200 chr4D 99.000 100 1 0 1031 1130 42625265 42625364 2.050000e-41 180.0
20 TraesCS2D01G271200 chr4D 95.238 84 3 1 2259 2342 253857581 253857663 5.830000e-27 132.0
21 TraesCS2D01G271200 chr2B 97.950 1317 21 4 1280 2593 474897223 474898536 0.000000e+00 2278.0
22 TraesCS2D01G271200 chr3D 98.127 1228 21 2 1031 2258 21903251 21902026 0.000000e+00 2139.0
23 TraesCS2D01G271200 chr3D 98.200 889 13 2 1710 2596 21902036 21901149 0.000000e+00 1550.0
24 TraesCS2D01G271200 chr3D 96.502 486 17 0 12 497 136283034 136282549 0.000000e+00 804.0
25 TraesCS2D01G271200 chr3D 96.502 486 17 0 12 497 225545506 225545991 0.000000e+00 804.0
26 TraesCS2D01G271200 chr7D 98.710 853 9 2 1217 2069 231553194 231552344 0.000000e+00 1513.0
27 TraesCS2D01G271200 chr7D 96.502 486 17 0 12 497 443532054 443531569 0.000000e+00 804.0
28 TraesCS2D01G271200 chr7D 94.615 520 17 9 496 1006 529550255 529550772 0.000000e+00 795.0
29 TraesCS2D01G271200 chr7D 94.412 519 19 5 496 1006 210069987 210069471 0.000000e+00 789.0
30 TraesCS2D01G271200 chr7D 93.411 516 27 4 496 1006 347884707 347884194 0.000000e+00 758.0
31 TraesCS2D01G271200 chr7D 98.467 261 4 0 1031 1291 484627471 484627211 6.550000e-126 460.0
32 TraesCS2D01G271200 chr6D 96.502 486 17 0 12 497 395436305 395435820 0.000000e+00 804.0
33 TraesCS2D01G271200 chr6D 94.778 517 20 5 496 1006 453152026 453152541 0.000000e+00 798.0
34 TraesCS2D01G271200 chr6D 94.347 513 20 8 496 1006 15075557 15076062 0.000000e+00 778.0
35 TraesCS2D01G271200 chr6D 93.617 517 24 7 496 1006 190585154 190585667 0.000000e+00 763.0
36 TraesCS2D01G271200 chr6D 92.829 516 29 5 496 1006 189470265 189469753 0.000000e+00 741.0
37 TraesCS2D01G271200 chr6D 98.773 163 2 0 2127 2289 112848976 112848814 9.090000e-75 291.0
38 TraesCS2D01G271200 chr6D 96.591 88 2 1 2509 2596 213395925 213395839 7.490000e-31 145.0
39 TraesCS2D01G271200 chr6D 98.750 80 1 0 1099 1178 429808321 429808242 2.690000e-30 143.0
40 TraesCS2D01G271200 chr6D 100.000 40 0 0 2420 2459 296970107 296970146 9.970000e-10 75.0
41 TraesCS2D01G271200 chr3A 93.822 518 23 6 496 1006 52112624 52112109 0.000000e+00 771.0
42 TraesCS2D01G271200 chr4B 96.610 413 11 2 2186 2596 645424581 645424170 0.000000e+00 682.0
43 TraesCS2D01G271200 chrUn 98.479 263 2 1 2336 2596 441827187 441827449 1.820000e-126 462.0
44 TraesCS2D01G271200 chrUn 91.549 71 6 0 2283 2353 359298919 359298989 5.910000e-17 99.0
45 TraesCS2D01G271200 chrUn 91.549 71 6 0 2283 2353 409018504 409018574 5.910000e-17 99.0
46 TraesCS2D01G271200 chr2A 95.222 293 13 1 1031 1323 531198740 531199031 1.820000e-126 462.0
47 TraesCS2D01G271200 chr1A 96.032 252 7 2 1031 1280 112777408 112777658 8.650000e-110 407.0
48 TraesCS2D01G271200 chr6A 99.029 103 1 0 1084 1186 73164913 73165015 4.410000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G271200 chr2D 334229553 334232149 2596 True 4796.0 4796 100.0000 1 2597 1 chr2D.!!$R1 2596
1 TraesCS2D01G271200 chr1D 483915977 483917544 1567 False 2756.0 2756 98.4070 1031 2596 1 chr1D.!!$F3 1565
2 TraesCS2D01G271200 chr1D 254495071 254496632 1561 True 2706.0 2706 97.8950 1031 2596 1 chr1D.!!$R2 1565
3 TraesCS2D01G271200 chr1D 19956117 19956660 543 True 839.0 839 95.0370 1031 1556 1 chr1D.!!$R1 525
4 TraesCS2D01G271200 chr5D 240134764 240136331 1567 True 2750.0 2750 98.3430 1031 2596 1 chr5D.!!$R2 1565
5 TraesCS2D01G271200 chr5D 6202653 6204215 1562 False 2689.0 2689 97.7040 1031 2596 1 chr5D.!!$F1 1565
6 TraesCS2D01G271200 chr5D 449151290 449152094 804 False 1376.0 1376 97.5250 1792 2596 1 chr5D.!!$F3 804
7 TraesCS2D01G271200 chr5D 292573607 292574112 505 True 734.0 734 92.8290 496 1006 1 chr5D.!!$R4 510
8 TraesCS2D01G271200 chr3B 201510187 201511753 1566 True 2726.0 2726 98.0880 1031 2596 1 chr3B.!!$R1 1565
9 TraesCS2D01G271200 chr4D 19913558 19915122 1564 True 2525.0 2525 95.7960 1032 2596 1 chr4D.!!$R1 1564
10 TraesCS2D01G271200 chr2B 474897223 474898536 1313 False 2278.0 2278 97.9500 1280 2593 1 chr2B.!!$F1 1313
11 TraesCS2D01G271200 chr3D 21901149 21903251 2102 True 1844.5 2139 98.1635 1031 2596 2 chr3D.!!$R2 1565
12 TraesCS2D01G271200 chr7D 231552344 231553194 850 True 1513.0 1513 98.7100 1217 2069 1 chr7D.!!$R2 852
13 TraesCS2D01G271200 chr7D 529550255 529550772 517 False 795.0 795 94.6150 496 1006 1 chr7D.!!$F1 510
14 TraesCS2D01G271200 chr7D 210069471 210069987 516 True 789.0 789 94.4120 496 1006 1 chr7D.!!$R1 510
15 TraesCS2D01G271200 chr7D 347884194 347884707 513 True 758.0 758 93.4110 496 1006 1 chr7D.!!$R3 510
16 TraesCS2D01G271200 chr6D 453152026 453152541 515 False 798.0 798 94.7780 496 1006 1 chr6D.!!$F4 510
17 TraesCS2D01G271200 chr6D 15075557 15076062 505 False 778.0 778 94.3470 496 1006 1 chr6D.!!$F1 510
18 TraesCS2D01G271200 chr6D 190585154 190585667 513 False 763.0 763 93.6170 496 1006 1 chr6D.!!$F2 510
19 TraesCS2D01G271200 chr6D 189469753 189470265 512 True 741.0 741 92.8290 496 1006 1 chr6D.!!$R2 510
20 TraesCS2D01G271200 chr3A 52112109 52112624 515 True 771.0 771 93.8220 496 1006 1 chr3A.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 910 0.400213 CCTGTTGTGCCTGAGGGTTA 59.6 55.0 0.0 0.0 34.45 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 1881 6.319399 CGTCGGCATGTTGTATGTATATAGA 58.681 40.0 0.0 0.0 0.0 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.820153 AGAGGATTAAGAAGATGCAAAGAAAT 57.180 30.769 0.00 0.00 0.00 2.17
26 27 8.901793 AGAGGATTAAGAAGATGCAAAGAAATC 58.098 33.333 0.00 0.00 0.00 2.17
27 28 8.820153 AGGATTAAGAAGATGCAAAGAAATCT 57.180 30.769 0.00 0.00 34.58 2.40
28 29 9.911788 AGGATTAAGAAGATGCAAAGAAATCTA 57.088 29.630 0.00 0.00 32.79 1.98
35 36 9.458727 AGAAGATGCAAAGAAATCTATGAAAGA 57.541 29.630 0.00 0.00 39.02 2.52
40 41 9.649167 ATGCAAAGAAATCTATGAAAGAAAAGG 57.351 29.630 0.00 0.00 37.89 3.11
41 42 8.090214 TGCAAAGAAATCTATGAAAGAAAAGGG 58.910 33.333 0.00 0.00 37.89 3.95
42 43 8.090831 GCAAAGAAATCTATGAAAGAAAAGGGT 58.909 33.333 0.00 0.00 37.89 4.34
51 52 9.975218 TCTATGAAAGAAAAGGGTATTAAAGCT 57.025 29.630 0.00 0.00 0.00 3.74
53 54 8.650143 ATGAAAGAAAAGGGTATTAAAGCTGA 57.350 30.769 0.00 0.00 0.00 4.26
54 55 8.472007 TGAAAGAAAAGGGTATTAAAGCTGAA 57.528 30.769 0.00 0.00 0.00 3.02
55 56 8.576442 TGAAAGAAAAGGGTATTAAAGCTGAAG 58.424 33.333 0.00 0.00 0.00 3.02
56 57 8.706322 AAAGAAAAGGGTATTAAAGCTGAAGA 57.294 30.769 0.00 0.00 0.00 2.87
57 58 8.885693 AAGAAAAGGGTATTAAAGCTGAAGAT 57.114 30.769 0.00 0.00 0.00 2.40
58 59 8.286191 AGAAAAGGGTATTAAAGCTGAAGATG 57.714 34.615 0.00 0.00 0.00 2.90
59 60 7.890655 AGAAAAGGGTATTAAAGCTGAAGATGT 59.109 33.333 0.00 0.00 0.00 3.06
60 61 8.422577 AAAAGGGTATTAAAGCTGAAGATGTT 57.577 30.769 0.00 0.00 0.00 2.71
61 62 9.528489 AAAAGGGTATTAAAGCTGAAGATGTTA 57.472 29.630 0.00 0.00 0.00 2.41
62 63 9.528489 AAAGGGTATTAAAGCTGAAGATGTTAA 57.472 29.630 0.00 0.00 0.00 2.01
63 64 8.738645 AGGGTATTAAAGCTGAAGATGTTAAG 57.261 34.615 0.00 0.00 0.00 1.85
64 65 8.548877 AGGGTATTAAAGCTGAAGATGTTAAGA 58.451 33.333 0.00 0.00 0.00 2.10
65 66 9.174166 GGGTATTAAAGCTGAAGATGTTAAGAA 57.826 33.333 0.00 0.00 0.00 2.52
72 73 8.870075 AAGCTGAAGATGTTAAGAATTTACCT 57.130 30.769 0.00 0.00 0.00 3.08
73 74 8.499403 AGCTGAAGATGTTAAGAATTTACCTC 57.501 34.615 0.00 0.00 0.00 3.85
74 75 7.554476 AGCTGAAGATGTTAAGAATTTACCTCC 59.446 37.037 0.00 0.00 0.00 4.30
75 76 7.466050 GCTGAAGATGTTAAGAATTTACCTCCG 60.466 40.741 0.00 0.00 0.00 4.63
76 77 6.821665 TGAAGATGTTAAGAATTTACCTCCGG 59.178 38.462 0.00 0.00 0.00 5.14
77 78 6.309389 AGATGTTAAGAATTTACCTCCGGT 57.691 37.500 0.00 0.00 40.16 5.28
78 79 6.718294 AGATGTTAAGAATTTACCTCCGGTT 58.282 36.000 0.00 0.00 37.09 4.44
79 80 6.598064 AGATGTTAAGAATTTACCTCCGGTTG 59.402 38.462 0.00 0.00 37.09 3.77
80 81 5.867330 TGTTAAGAATTTACCTCCGGTTGA 58.133 37.500 0.00 0.00 37.09 3.18
81 82 6.297582 TGTTAAGAATTTACCTCCGGTTGAA 58.702 36.000 0.00 0.00 37.09 2.69
82 83 6.428771 TGTTAAGAATTTACCTCCGGTTGAAG 59.571 38.462 0.00 0.00 37.09 3.02
83 84 4.903045 AGAATTTACCTCCGGTTGAAGA 57.097 40.909 0.00 0.00 37.09 2.87
84 85 5.237236 AGAATTTACCTCCGGTTGAAGAA 57.763 39.130 0.00 0.00 37.09 2.52
85 86 5.627135 AGAATTTACCTCCGGTTGAAGAAA 58.373 37.500 0.00 0.00 37.09 2.52
86 87 6.246163 AGAATTTACCTCCGGTTGAAGAAAT 58.754 36.000 0.00 0.00 37.09 2.17
87 88 7.399634 AGAATTTACCTCCGGTTGAAGAAATA 58.600 34.615 0.00 0.00 37.09 1.40
88 89 6.997239 ATTTACCTCCGGTTGAAGAAATAC 57.003 37.500 0.00 0.00 37.09 1.89
89 90 5.486735 TTACCTCCGGTTGAAGAAATACA 57.513 39.130 0.00 0.00 37.09 2.29
90 91 4.569719 ACCTCCGGTTGAAGAAATACAT 57.430 40.909 0.00 0.00 27.29 2.29
91 92 4.261801 ACCTCCGGTTGAAGAAATACATG 58.738 43.478 0.00 0.00 27.29 3.21
92 93 3.627577 CCTCCGGTTGAAGAAATACATGG 59.372 47.826 0.00 0.00 0.00 3.66
93 94 4.261801 CTCCGGTTGAAGAAATACATGGT 58.738 43.478 0.00 0.00 0.00 3.55
94 95 4.258543 TCCGGTTGAAGAAATACATGGTC 58.741 43.478 0.00 0.00 0.00 4.02
95 96 4.019681 TCCGGTTGAAGAAATACATGGTCT 60.020 41.667 0.00 0.00 0.00 3.85
96 97 4.700213 CCGGTTGAAGAAATACATGGTCTT 59.300 41.667 0.00 0.19 34.33 3.01
97 98 5.878116 CCGGTTGAAGAAATACATGGTCTTA 59.122 40.000 0.00 0.00 31.80 2.10
98 99 6.373216 CCGGTTGAAGAAATACATGGTCTTAA 59.627 38.462 0.00 0.00 31.80 1.85
99 100 7.067008 CCGGTTGAAGAAATACATGGTCTTAAT 59.933 37.037 0.00 0.00 31.80 1.40
100 101 8.458843 CGGTTGAAGAAATACATGGTCTTAATT 58.541 33.333 0.00 0.00 31.80 1.40
105 106 9.931210 GAAGAAATACATGGTCTTAATTTACCG 57.069 33.333 0.00 0.00 38.70 4.02
106 107 7.927048 AGAAATACATGGTCTTAATTTACCGC 58.073 34.615 0.00 0.00 38.70 5.68
107 108 6.628919 AATACATGGTCTTAATTTACCGCC 57.371 37.500 0.00 0.00 38.70 6.13
108 109 4.230745 ACATGGTCTTAATTTACCGCCT 57.769 40.909 0.00 0.00 38.70 5.52
109 110 5.362105 ACATGGTCTTAATTTACCGCCTA 57.638 39.130 0.00 0.00 38.70 3.93
110 111 5.937111 ACATGGTCTTAATTTACCGCCTAT 58.063 37.500 0.00 0.00 38.70 2.57
111 112 6.362248 ACATGGTCTTAATTTACCGCCTATT 58.638 36.000 0.00 0.00 38.70 1.73
112 113 6.262273 ACATGGTCTTAATTTACCGCCTATTG 59.738 38.462 0.00 0.00 38.70 1.90
113 114 5.991861 TGGTCTTAATTTACCGCCTATTGA 58.008 37.500 0.00 0.00 38.70 2.57
114 115 6.416415 TGGTCTTAATTTACCGCCTATTGAA 58.584 36.000 0.00 0.00 38.70 2.69
115 116 6.540914 TGGTCTTAATTTACCGCCTATTGAAG 59.459 38.462 0.00 0.00 38.70 3.02
116 117 6.764560 GGTCTTAATTTACCGCCTATTGAAGA 59.235 38.462 0.00 0.00 0.00 2.87
117 118 7.281549 GGTCTTAATTTACCGCCTATTGAAGAA 59.718 37.037 0.00 0.00 0.00 2.52
118 119 8.671028 GTCTTAATTTACCGCCTATTGAAGAAA 58.329 33.333 0.00 0.00 0.00 2.52
119 120 9.403583 TCTTAATTTACCGCCTATTGAAGAAAT 57.596 29.630 0.00 0.00 0.00 2.17
122 123 8.514330 AATTTACCGCCTATTGAAGAAATACA 57.486 30.769 0.00 0.00 0.00 2.29
123 124 8.691661 ATTTACCGCCTATTGAAGAAATACAT 57.308 30.769 0.00 0.00 0.00 2.29
124 125 7.490962 TTACCGCCTATTGAAGAAATACATG 57.509 36.000 0.00 0.00 0.00 3.21
125 126 5.680619 ACCGCCTATTGAAGAAATACATGA 58.319 37.500 0.00 0.00 0.00 3.07
126 127 6.299141 ACCGCCTATTGAAGAAATACATGAT 58.701 36.000 0.00 0.00 0.00 2.45
127 128 6.772716 ACCGCCTATTGAAGAAATACATGATT 59.227 34.615 0.00 0.00 0.00 2.57
128 129 7.285401 ACCGCCTATTGAAGAAATACATGATTT 59.715 33.333 0.00 1.08 40.62 2.17
129 130 8.137437 CCGCCTATTGAAGAAATACATGATTTT 58.863 33.333 0.00 0.00 37.90 1.82
146 147 9.645128 ACATGATTTTAATCCATCACCTATTGA 57.355 29.630 0.00 0.00 34.98 2.57
149 150 9.919416 TGATTTTAATCCATCACCTATTGAAGA 57.081 29.630 0.32 0.00 34.49 2.87
153 154 9.527157 TTTAATCCATCACCTATTGAAGAAACA 57.473 29.630 0.00 0.00 37.92 2.83
154 155 7.396540 AATCCATCACCTATTGAAGAAACAC 57.603 36.000 0.00 0.00 37.92 3.32
155 156 5.875224 TCCATCACCTATTGAAGAAACACA 58.125 37.500 0.00 0.00 37.92 3.72
156 157 6.484288 TCCATCACCTATTGAAGAAACACAT 58.516 36.000 0.00 0.00 37.92 3.21
157 158 6.375174 TCCATCACCTATTGAAGAAACACATG 59.625 38.462 0.00 0.00 37.92 3.21
158 159 6.405065 CCATCACCTATTGAAGAAACACATGG 60.405 42.308 0.00 0.00 37.92 3.66
159 160 5.630121 TCACCTATTGAAGAAACACATGGT 58.370 37.500 0.00 0.00 0.00 3.55
160 161 5.705441 TCACCTATTGAAGAAACACATGGTC 59.295 40.000 0.00 0.00 0.00 4.02
161 162 5.707298 CACCTATTGAAGAAACACATGGTCT 59.293 40.000 0.00 0.00 0.00 3.85
162 163 6.207417 CACCTATTGAAGAAACACATGGTCTT 59.793 38.462 0.00 0.19 34.33 3.01
163 164 6.207417 ACCTATTGAAGAAACACATGGTCTTG 59.793 38.462 0.00 0.00 31.80 3.02
164 165 6.430925 CCTATTGAAGAAACACATGGTCTTGA 59.569 38.462 0.00 0.00 31.80 3.02
165 166 6.906157 ATTGAAGAAACACATGGTCTTGAT 57.094 33.333 0.00 0.00 31.80 2.57
166 167 9.166173 CTATTGAAGAAACACATGGTCTTGATA 57.834 33.333 0.00 1.93 31.80 2.15
167 168 7.815840 TTGAAGAAACACATGGTCTTGATAA 57.184 32.000 0.00 0.00 31.80 1.75
168 169 7.202016 TGAAGAAACACATGGTCTTGATAAC 57.798 36.000 0.00 0.00 31.80 1.89
169 170 6.206634 TGAAGAAACACATGGTCTTGATAACC 59.793 38.462 0.00 0.00 37.31 2.85
170 171 5.010282 AGAAACACATGGTCTTGATAACCC 58.990 41.667 0.00 0.00 35.84 4.11
171 172 2.985896 ACACATGGTCTTGATAACCCG 58.014 47.619 0.00 0.00 35.84 5.28
172 173 2.569853 ACACATGGTCTTGATAACCCGA 59.430 45.455 0.00 0.00 35.84 5.14
173 174 2.936498 CACATGGTCTTGATAACCCGAC 59.064 50.000 0.00 0.00 35.84 4.79
174 175 2.569853 ACATGGTCTTGATAACCCGACA 59.430 45.455 0.00 0.00 35.84 4.35
175 176 2.754946 TGGTCTTGATAACCCGACAC 57.245 50.000 0.00 0.00 35.84 3.67
176 177 1.972075 TGGTCTTGATAACCCGACACA 59.028 47.619 0.00 0.00 35.84 3.72
177 178 2.028476 TGGTCTTGATAACCCGACACAG 60.028 50.000 0.00 0.00 35.84 3.66
178 179 2.618053 GTCTTGATAACCCGACACAGG 58.382 52.381 0.00 0.00 0.00 4.00
179 180 2.028385 GTCTTGATAACCCGACACAGGT 60.028 50.000 0.00 0.00 40.14 4.00
180 181 3.194116 GTCTTGATAACCCGACACAGGTA 59.806 47.826 0.00 0.00 36.27 3.08
181 182 3.446161 TCTTGATAACCCGACACAGGTAG 59.554 47.826 0.00 0.00 36.27 3.18
182 183 2.811410 TGATAACCCGACACAGGTAGT 58.189 47.619 0.00 0.00 36.27 2.73
183 184 3.966979 TGATAACCCGACACAGGTAGTA 58.033 45.455 0.00 0.00 36.27 1.82
184 185 4.343231 TGATAACCCGACACAGGTAGTAA 58.657 43.478 0.00 0.00 36.27 2.24
185 186 4.771577 TGATAACCCGACACAGGTAGTAAA 59.228 41.667 0.00 0.00 36.27 2.01
186 187 3.672767 AACCCGACACAGGTAGTAAAG 57.327 47.619 0.00 0.00 36.27 1.85
187 188 1.897802 ACCCGACACAGGTAGTAAAGG 59.102 52.381 0.00 0.00 35.24 3.11
188 189 1.897802 CCCGACACAGGTAGTAAAGGT 59.102 52.381 0.00 0.00 0.00 3.50
189 190 3.091545 CCCGACACAGGTAGTAAAGGTA 58.908 50.000 0.00 0.00 0.00 3.08
190 191 3.511146 CCCGACACAGGTAGTAAAGGTAA 59.489 47.826 0.00 0.00 0.00 2.85
191 192 4.021192 CCCGACACAGGTAGTAAAGGTAAA 60.021 45.833 0.00 0.00 0.00 2.01
192 193 5.337813 CCCGACACAGGTAGTAAAGGTAAAT 60.338 44.000 0.00 0.00 0.00 1.40
193 194 6.168389 CCGACACAGGTAGTAAAGGTAAATT 58.832 40.000 0.00 0.00 0.00 1.82
194 195 6.312180 CCGACACAGGTAGTAAAGGTAAATTC 59.688 42.308 0.00 0.00 0.00 2.17
195 196 7.095270 CGACACAGGTAGTAAAGGTAAATTCT 58.905 38.462 0.00 0.00 0.00 2.40
196 197 7.275123 CGACACAGGTAGTAAAGGTAAATTCTC 59.725 40.741 0.00 0.00 0.00 2.87
197 198 8.203681 ACACAGGTAGTAAAGGTAAATTCTCT 57.796 34.615 0.00 0.00 0.00 3.10
198 199 8.312564 ACACAGGTAGTAAAGGTAAATTCTCTC 58.687 37.037 0.00 0.00 0.00 3.20
199 200 8.532819 CACAGGTAGTAAAGGTAAATTCTCTCT 58.467 37.037 0.00 0.00 0.00 3.10
200 201 9.765295 ACAGGTAGTAAAGGTAAATTCTCTCTA 57.235 33.333 0.00 0.00 0.00 2.43
215 216 9.757227 AAATTCTCTCTATAGATTTGACGAAGG 57.243 33.333 2.11 0.00 0.00 3.46
216 217 7.883391 TTCTCTCTATAGATTTGACGAAGGT 57.117 36.000 2.11 0.00 0.00 3.50
217 218 7.265647 TCTCTCTATAGATTTGACGAAGGTG 57.734 40.000 2.11 0.00 0.00 4.00
218 219 7.054751 TCTCTCTATAGATTTGACGAAGGTGA 58.945 38.462 2.11 0.00 0.00 4.02
219 220 7.721842 TCTCTCTATAGATTTGACGAAGGTGAT 59.278 37.037 2.11 0.00 0.00 3.06
220 221 8.919777 TCTCTATAGATTTGACGAAGGTGATA 57.080 34.615 2.11 0.00 0.00 2.15
221 222 9.521841 TCTCTATAGATTTGACGAAGGTGATAT 57.478 33.333 2.11 0.00 0.00 1.63
224 225 9.360093 CTATAGATTTGACGAAGGTGATATTCC 57.640 37.037 0.00 0.00 0.00 3.01
225 226 6.240549 AGATTTGACGAAGGTGATATTCCT 57.759 37.500 0.00 0.00 36.81 3.36
226 227 6.284459 AGATTTGACGAAGGTGATATTCCTC 58.716 40.000 0.00 0.00 33.76 3.71
227 228 3.710326 TGACGAAGGTGATATTCCTCG 57.290 47.619 0.00 12.86 33.76 4.63
228 229 3.021695 TGACGAAGGTGATATTCCTCGT 58.978 45.455 16.55 16.55 39.48 4.18
229 230 3.446161 TGACGAAGGTGATATTCCTCGTT 59.554 43.478 17.09 1.49 38.17 3.85
230 231 4.641541 TGACGAAGGTGATATTCCTCGTTA 59.358 41.667 17.09 13.61 38.17 3.18
231 232 5.301045 TGACGAAGGTGATATTCCTCGTTAT 59.699 40.000 17.09 0.80 38.17 1.89
232 233 6.487668 TGACGAAGGTGATATTCCTCGTTATA 59.512 38.462 17.09 10.28 38.17 0.98
233 234 7.013559 TGACGAAGGTGATATTCCTCGTTATAA 59.986 37.037 17.09 0.00 38.17 0.98
234 235 7.368833 ACGAAGGTGATATTCCTCGTTATAAG 58.631 38.462 13.63 0.00 36.36 1.73
235 236 7.014038 ACGAAGGTGATATTCCTCGTTATAAGT 59.986 37.037 13.63 0.00 36.36 2.24
236 237 7.537991 CGAAGGTGATATTCCTCGTTATAAGTC 59.462 40.741 1.71 0.00 33.76 3.01
237 238 8.480133 AAGGTGATATTCCTCGTTATAAGTCT 57.520 34.615 1.71 0.00 33.76 3.24
238 239 7.887381 AGGTGATATTCCTCGTTATAAGTCTG 58.113 38.462 0.00 0.00 0.00 3.51
239 240 6.586844 GGTGATATTCCTCGTTATAAGTCTGC 59.413 42.308 0.00 0.00 0.00 4.26
240 241 7.371936 GTGATATTCCTCGTTATAAGTCTGCT 58.628 38.462 0.00 0.00 0.00 4.24
241 242 8.512956 GTGATATTCCTCGTTATAAGTCTGCTA 58.487 37.037 0.00 0.00 0.00 3.49
242 243 8.731605 TGATATTCCTCGTTATAAGTCTGCTAG 58.268 37.037 0.00 0.00 0.00 3.42
243 244 4.832590 TCCTCGTTATAAGTCTGCTAGC 57.167 45.455 8.10 8.10 0.00 3.42
244 245 3.568853 TCCTCGTTATAAGTCTGCTAGCC 59.431 47.826 13.29 0.00 0.00 3.93
245 246 3.318275 CCTCGTTATAAGTCTGCTAGCCA 59.682 47.826 13.29 0.00 0.00 4.75
246 247 4.202121 CCTCGTTATAAGTCTGCTAGCCAA 60.202 45.833 13.29 0.00 0.00 4.52
247 248 5.509840 CCTCGTTATAAGTCTGCTAGCCAAT 60.510 44.000 13.29 0.00 0.00 3.16
248 249 5.289595 TCGTTATAAGTCTGCTAGCCAATG 58.710 41.667 13.29 0.00 0.00 2.82
249 250 4.084328 CGTTATAAGTCTGCTAGCCAATGC 60.084 45.833 13.29 0.00 37.95 3.56
263 264 4.970662 GCCAATGCTTAGATGAGTTTGA 57.029 40.909 0.00 0.00 33.53 2.69
264 265 5.511234 GCCAATGCTTAGATGAGTTTGAT 57.489 39.130 0.00 0.00 33.53 2.57
265 266 6.624352 GCCAATGCTTAGATGAGTTTGATA 57.376 37.500 0.00 0.00 33.53 2.15
266 267 7.031226 GCCAATGCTTAGATGAGTTTGATAA 57.969 36.000 0.00 0.00 33.53 1.75
267 268 7.655490 GCCAATGCTTAGATGAGTTTGATAAT 58.345 34.615 0.00 0.00 33.53 1.28
268 269 8.139989 GCCAATGCTTAGATGAGTTTGATAATT 58.860 33.333 0.00 0.00 33.53 1.40
292 293 9.883142 ATTTTATTGTCAAACAGGAAAACTTCA 57.117 25.926 0.00 0.00 31.13 3.02
293 294 9.712305 TTTTATTGTCAAACAGGAAAACTTCAA 57.288 25.926 0.00 0.00 0.00 2.69
294 295 9.883142 TTTATTGTCAAACAGGAAAACTTCAAT 57.117 25.926 0.00 0.00 0.00 2.57
295 296 7.775397 ATTGTCAAACAGGAAAACTTCAATG 57.225 32.000 0.00 0.00 0.00 2.82
296 297 5.108517 TGTCAAACAGGAAAACTTCAATGC 58.891 37.500 0.00 0.00 0.00 3.56
297 298 5.105392 TGTCAAACAGGAAAACTTCAATGCT 60.105 36.000 0.00 0.00 0.00 3.79
298 299 5.812127 GTCAAACAGGAAAACTTCAATGCTT 59.188 36.000 0.00 0.00 0.00 3.91
299 300 6.978080 GTCAAACAGGAAAACTTCAATGCTTA 59.022 34.615 0.00 0.00 0.00 3.09
300 301 7.653311 GTCAAACAGGAAAACTTCAATGCTTAT 59.347 33.333 0.00 0.00 0.00 1.73
301 302 7.652909 TCAAACAGGAAAACTTCAATGCTTATG 59.347 33.333 0.00 0.00 0.00 1.90
302 303 6.655078 ACAGGAAAACTTCAATGCTTATGT 57.345 33.333 0.00 0.00 0.00 2.29
303 304 7.054491 ACAGGAAAACTTCAATGCTTATGTT 57.946 32.000 0.00 0.00 0.00 2.71
304 305 6.925165 ACAGGAAAACTTCAATGCTTATGTTG 59.075 34.615 0.00 0.00 0.00 3.33
305 306 6.366877 CAGGAAAACTTCAATGCTTATGTTGG 59.633 38.462 0.00 0.00 0.00 3.77
306 307 6.041979 AGGAAAACTTCAATGCTTATGTTGGT 59.958 34.615 0.00 0.00 0.00 3.67
307 308 7.232534 AGGAAAACTTCAATGCTTATGTTGGTA 59.767 33.333 0.00 0.00 0.00 3.25
308 309 8.034804 GGAAAACTTCAATGCTTATGTTGGTAT 58.965 33.333 0.00 0.00 0.00 2.73
310 311 9.855021 AAAACTTCAATGCTTATGTTGGTATAC 57.145 29.630 0.00 0.00 0.00 1.47
311 312 8.574251 AACTTCAATGCTTATGTTGGTATACA 57.426 30.769 5.01 0.00 0.00 2.29
312 313 8.574251 ACTTCAATGCTTATGTTGGTATACAA 57.426 30.769 5.01 0.00 36.54 2.41
313 314 9.189156 ACTTCAATGCTTATGTTGGTATACAAT 57.811 29.630 5.01 0.00 41.95 2.71
315 316 9.800433 TTCAATGCTTATGTTGGTATACAATTG 57.200 29.630 3.24 3.24 41.95 2.32
316 317 9.183368 TCAATGCTTATGTTGGTATACAATTGA 57.817 29.630 13.59 0.00 41.95 2.57
317 318 9.800433 CAATGCTTATGTTGGTATACAATTGAA 57.200 29.630 13.59 0.00 41.95 2.69
319 320 9.801873 ATGCTTATGTTGGTATACAATTGAAAC 57.198 29.630 13.59 6.73 41.95 2.78
320 321 8.797438 TGCTTATGTTGGTATACAATTGAAACA 58.203 29.630 13.59 11.92 41.95 2.83
321 322 9.072294 GCTTATGTTGGTATACAATTGAAACAC 57.928 33.333 13.59 4.26 41.95 3.32
325 326 8.809159 TGTTGGTATACAATTGAAACACAATG 57.191 30.769 13.59 0.00 46.90 2.82
326 327 7.383572 TGTTGGTATACAATTGAAACACAATGC 59.616 33.333 13.59 2.47 46.90 3.56
327 328 7.225784 TGGTATACAATTGAAACACAATGCT 57.774 32.000 13.59 0.00 46.90 3.79
328 329 7.665690 TGGTATACAATTGAAACACAATGCTT 58.334 30.769 13.59 0.00 46.90 3.91
329 330 8.797438 TGGTATACAATTGAAACACAATGCTTA 58.203 29.630 13.59 0.00 46.90 3.09
330 331 9.801873 GGTATACAATTGAAACACAATGCTTAT 57.198 29.630 13.59 0.00 46.90 1.73
340 341 9.571810 TGAAACACAATGCTTATATGATTGAAC 57.428 29.630 0.00 0.00 32.47 3.18
341 342 9.571810 GAAACACAATGCTTATATGATTGAACA 57.428 29.630 0.00 0.00 32.47 3.18
342 343 8.915871 AACACAATGCTTATATGATTGAACAC 57.084 30.769 0.00 0.00 32.47 3.32
343 344 8.284945 ACACAATGCTTATATGATTGAACACT 57.715 30.769 0.00 0.00 32.47 3.55
344 345 8.742777 ACACAATGCTTATATGATTGAACACTT 58.257 29.630 0.00 0.00 32.47 3.16
345 346 9.016623 CACAATGCTTATATGATTGAACACTTG 57.983 33.333 0.00 0.00 32.47 3.16
346 347 8.192774 ACAATGCTTATATGATTGAACACTTGG 58.807 33.333 0.00 0.00 32.47 3.61
347 348 6.698008 TGCTTATATGATTGAACACTTGGG 57.302 37.500 0.00 0.00 0.00 4.12
348 349 6.186957 TGCTTATATGATTGAACACTTGGGT 58.813 36.000 0.00 0.00 0.00 4.51
350 351 6.318648 GCTTATATGATTGAACACTTGGGTGA 59.681 38.462 3.06 0.00 45.61 4.02
351 352 7.013655 GCTTATATGATTGAACACTTGGGTGAT 59.986 37.037 3.06 0.00 45.61 3.06
352 353 8.821686 TTATATGATTGAACACTTGGGTGATT 57.178 30.769 3.06 0.00 45.61 2.57
353 354 9.913310 TTATATGATTGAACACTTGGGTGATTA 57.087 29.630 3.06 0.00 45.61 1.75
357 358 8.224389 TGATTGAACACTTGGGTGATTATATG 57.776 34.615 3.06 0.00 45.61 1.78
358 359 7.833682 TGATTGAACACTTGGGTGATTATATGT 59.166 33.333 3.06 0.00 45.61 2.29
359 360 7.624360 TTGAACACTTGGGTGATTATATGTC 57.376 36.000 3.06 0.00 45.61 3.06
360 361 6.957631 TGAACACTTGGGTGATTATATGTCT 58.042 36.000 3.06 0.00 45.61 3.41
361 362 8.084985 TGAACACTTGGGTGATTATATGTCTA 57.915 34.615 3.06 0.00 45.61 2.59
362 363 8.204160 TGAACACTTGGGTGATTATATGTCTAG 58.796 37.037 3.06 0.00 45.61 2.43
363 364 7.914427 ACACTTGGGTGATTATATGTCTAGA 57.086 36.000 3.06 0.00 45.61 2.43
364 365 7.957002 ACACTTGGGTGATTATATGTCTAGAG 58.043 38.462 0.00 0.00 45.61 2.43
365 366 7.565398 ACACTTGGGTGATTATATGTCTAGAGT 59.435 37.037 0.00 0.00 45.61 3.24
366 367 8.424918 CACTTGGGTGATTATATGTCTAGAGTT 58.575 37.037 0.00 0.00 45.61 3.01
367 368 9.656323 ACTTGGGTGATTATATGTCTAGAGTTA 57.344 33.333 0.00 0.00 0.00 2.24
371 372 9.930693 GGGTGATTATATGTCTAGAGTTAAAGG 57.069 37.037 0.00 0.00 0.00 3.11
382 383 9.538508 TGTCTAGAGTTAAAGGTGAACTTAAAC 57.461 33.333 0.00 0.00 38.85 2.01
383 384 9.761504 GTCTAGAGTTAAAGGTGAACTTAAACT 57.238 33.333 0.00 0.00 38.85 2.66
413 414 5.897377 AAACATGCTTCTATGGTTACCAC 57.103 39.130 6.10 0.00 36.27 4.16
414 415 4.844349 ACATGCTTCTATGGTTACCACT 57.156 40.909 6.10 0.00 35.80 4.00
415 416 4.770795 ACATGCTTCTATGGTTACCACTC 58.229 43.478 6.10 0.00 35.80 3.51
416 417 4.225042 ACATGCTTCTATGGTTACCACTCA 59.775 41.667 6.10 0.00 35.80 3.41
417 418 4.901197 TGCTTCTATGGTTACCACTCAA 57.099 40.909 6.10 0.00 35.80 3.02
418 419 4.832248 TGCTTCTATGGTTACCACTCAAG 58.168 43.478 6.10 9.71 35.80 3.02
419 420 4.286032 TGCTTCTATGGTTACCACTCAAGT 59.714 41.667 6.10 0.00 35.80 3.16
420 421 5.482526 TGCTTCTATGGTTACCACTCAAGTA 59.517 40.000 6.10 5.54 35.80 2.24
421 422 6.043411 GCTTCTATGGTTACCACTCAAGTAG 58.957 44.000 6.10 3.59 35.80 2.57
422 423 6.127423 GCTTCTATGGTTACCACTCAAGTAGA 60.127 42.308 6.10 6.14 35.80 2.59
423 424 7.578955 GCTTCTATGGTTACCACTCAAGTAGAA 60.579 40.741 16.98 16.98 35.80 2.10
424 425 7.166691 TCTATGGTTACCACTCAAGTAGAAC 57.833 40.000 6.10 0.00 35.80 3.01
425 426 5.818678 ATGGTTACCACTCAAGTAGAACA 57.181 39.130 6.10 0.00 35.80 3.18
426 427 5.617528 TGGTTACCACTCAAGTAGAACAA 57.382 39.130 0.00 0.00 0.00 2.83
427 428 5.607477 TGGTTACCACTCAAGTAGAACAAG 58.393 41.667 0.00 0.00 0.00 3.16
428 429 5.129815 TGGTTACCACTCAAGTAGAACAAGT 59.870 40.000 0.00 0.00 0.00 3.16
429 430 6.324512 TGGTTACCACTCAAGTAGAACAAGTA 59.675 38.462 0.00 0.00 0.00 2.24
430 431 6.644181 GGTTACCACTCAAGTAGAACAAGTAC 59.356 42.308 0.00 0.00 0.00 2.73
431 432 7.432059 GTTACCACTCAAGTAGAACAAGTACT 58.568 38.462 0.00 0.00 31.80 2.73
432 433 6.481434 ACCACTCAAGTAGAACAAGTACTT 57.519 37.500 1.12 1.12 40.62 2.24
433 434 7.592885 ACCACTCAAGTAGAACAAGTACTTA 57.407 36.000 8.04 0.00 38.42 2.24
434 435 8.015185 ACCACTCAAGTAGAACAAGTACTTAA 57.985 34.615 8.04 0.00 38.42 1.85
435 436 8.480501 ACCACTCAAGTAGAACAAGTACTTAAA 58.519 33.333 8.04 0.00 38.42 1.52
436 437 8.979574 CCACTCAAGTAGAACAAGTACTTAAAG 58.020 37.037 8.04 0.00 38.42 1.85
437 438 8.488764 CACTCAAGTAGAACAAGTACTTAAAGC 58.511 37.037 8.04 0.00 38.42 3.51
438 439 8.422566 ACTCAAGTAGAACAAGTACTTAAAGCT 58.577 33.333 8.04 6.29 38.42 3.74
439 440 8.813643 TCAAGTAGAACAAGTACTTAAAGCTC 57.186 34.615 8.04 0.00 38.42 4.09
440 441 8.418662 TCAAGTAGAACAAGTACTTAAAGCTCA 58.581 33.333 8.04 0.00 38.42 4.26
441 442 8.704234 CAAGTAGAACAAGTACTTAAAGCTCAG 58.296 37.037 8.04 0.00 38.42 3.35
442 443 8.179509 AGTAGAACAAGTACTTAAAGCTCAGA 57.820 34.615 8.04 0.00 0.00 3.27
443 444 8.639761 AGTAGAACAAGTACTTAAAGCTCAGAA 58.360 33.333 8.04 0.00 0.00 3.02
444 445 9.425577 GTAGAACAAGTACTTAAAGCTCAGAAT 57.574 33.333 8.04 0.00 0.00 2.40
445 446 8.316640 AGAACAAGTACTTAAAGCTCAGAATG 57.683 34.615 8.04 0.00 37.54 2.67
463 464 7.832769 TCAGAATGATTTGCTCAATGAATTGA 58.167 30.769 5.65 5.65 42.56 2.57
464 465 8.308207 TCAGAATGATTTGCTCAATGAATTGAA 58.692 29.630 7.13 0.00 42.56 2.69
465 466 9.098355 CAGAATGATTTGCTCAATGAATTGAAT 57.902 29.630 7.13 0.00 42.11 2.57
566 568 5.405571 TCACTATGAAGAACTTGAAAGACGC 59.594 40.000 0.00 0.00 0.00 5.19
621 623 3.070302 GGAGGTAAGGAACTGCCATCTAG 59.930 52.174 0.00 0.00 40.86 2.43
636 638 4.197750 CCATCTAGCTCTGCACTTGATTT 58.802 43.478 0.00 0.00 28.97 2.17
637 639 4.035324 CCATCTAGCTCTGCACTTGATTTG 59.965 45.833 0.00 0.00 28.97 2.32
678 680 0.796927 GCGACACCTAAACCTGCTTC 59.203 55.000 0.00 0.00 0.00 3.86
683 685 2.637872 ACACCTAAACCTGCTTCTGCTA 59.362 45.455 0.00 0.00 40.48 3.49
692 694 9.547753 CTAAACCTGCTTCTGCTATTAATTCTA 57.452 33.333 0.00 0.00 40.48 2.10
738 753 3.944015 GCCACTTCTGCTATGATGAAACT 59.056 43.478 0.00 0.00 0.00 2.66
745 760 8.972127 ACTTCTGCTATGATGAAACTACTTCTA 58.028 33.333 0.00 0.00 34.86 2.10
746 761 9.979578 CTTCTGCTATGATGAAACTACTTCTAT 57.020 33.333 0.00 0.00 34.86 1.98
747 762 9.755804 TTCTGCTATGATGAAACTACTTCTATG 57.244 33.333 0.00 0.00 34.86 2.23
748 763 7.869937 TCTGCTATGATGAAACTACTTCTATGC 59.130 37.037 0.00 0.00 34.86 3.14
749 764 7.730084 TGCTATGATGAAACTACTTCTATGCT 58.270 34.615 0.00 0.00 34.86 3.79
750 765 8.206867 TGCTATGATGAAACTACTTCTATGCTT 58.793 33.333 0.00 0.00 34.86 3.91
751 766 8.494347 GCTATGATGAAACTACTTCTATGCTTG 58.506 37.037 0.00 0.00 34.86 4.01
752 767 9.755804 CTATGATGAAACTACTTCTATGCTTGA 57.244 33.333 0.00 0.00 34.86 3.02
755 770 9.534565 TGATGAAACTACTTCTATGCTTGATAC 57.465 33.333 0.00 0.00 34.86 2.24
756 771 9.757227 GATGAAACTACTTCTATGCTTGATACT 57.243 33.333 0.00 0.00 34.86 2.12
761 776 8.754991 ACTACTTCTATGCTTGATACTACTGT 57.245 34.615 0.00 0.00 0.00 3.55
762 777 8.625651 ACTACTTCTATGCTTGATACTACTGTG 58.374 37.037 0.00 0.00 0.00 3.66
763 778 6.276847 ACTTCTATGCTTGATACTACTGTGC 58.723 40.000 0.00 0.00 0.00 4.57
764 779 5.201713 TCTATGCTTGATACTACTGTGCC 57.798 43.478 0.00 0.00 0.00 5.01
863 878 4.305524 AGTGATGATGAAGATTCTCCCCT 58.694 43.478 0.00 0.00 0.00 4.79
864 879 5.471424 AGTGATGATGAAGATTCTCCCCTA 58.529 41.667 0.00 0.00 0.00 3.53
865 880 5.543405 AGTGATGATGAAGATTCTCCCCTAG 59.457 44.000 0.00 0.00 0.00 3.02
866 881 5.541868 GTGATGATGAAGATTCTCCCCTAGA 59.458 44.000 0.00 0.00 0.00 2.43
867 882 6.213195 GTGATGATGAAGATTCTCCCCTAGAT 59.787 42.308 0.00 0.00 33.05 1.98
868 883 7.398618 GTGATGATGAAGATTCTCCCCTAGATA 59.601 40.741 0.00 0.00 33.05 1.98
869 884 8.127692 TGATGATGAAGATTCTCCCCTAGATAT 58.872 37.037 0.00 0.00 33.05 1.63
870 885 7.730672 TGATGAAGATTCTCCCCTAGATATG 57.269 40.000 0.00 0.00 33.05 1.78
871 886 7.482157 TGATGAAGATTCTCCCCTAGATATGA 58.518 38.462 0.00 0.00 33.05 2.15
872 887 7.958016 TGATGAAGATTCTCCCCTAGATATGAA 59.042 37.037 0.00 0.00 33.05 2.57
873 888 8.930287 ATGAAGATTCTCCCCTAGATATGAAT 57.070 34.615 0.00 0.00 33.05 2.57
874 889 8.748179 TGAAGATTCTCCCCTAGATATGAATT 57.252 34.615 0.00 0.00 33.05 2.17
875 890 8.600668 TGAAGATTCTCCCCTAGATATGAATTG 58.399 37.037 0.00 0.00 33.05 2.32
876 891 6.956497 AGATTCTCCCCTAGATATGAATTGC 58.044 40.000 0.00 0.00 33.05 3.56
877 892 5.505181 TTCTCCCCTAGATATGAATTGCC 57.495 43.478 0.00 0.00 33.05 4.52
878 893 4.767908 TCTCCCCTAGATATGAATTGCCT 58.232 43.478 0.00 0.00 0.00 4.75
879 894 4.533707 TCTCCCCTAGATATGAATTGCCTG 59.466 45.833 0.00 0.00 0.00 4.85
880 895 4.242811 TCCCCTAGATATGAATTGCCTGT 58.757 43.478 0.00 0.00 0.00 4.00
881 896 4.665009 TCCCCTAGATATGAATTGCCTGTT 59.335 41.667 0.00 0.00 0.00 3.16
882 897 4.763793 CCCCTAGATATGAATTGCCTGTTG 59.236 45.833 0.00 0.00 0.00 3.33
883 898 5.380043 CCCTAGATATGAATTGCCTGTTGT 58.620 41.667 0.00 0.00 0.00 3.32
884 899 5.240183 CCCTAGATATGAATTGCCTGTTGTG 59.760 44.000 0.00 0.00 0.00 3.33
885 900 4.644103 AGATATGAATTGCCTGTTGTGC 57.356 40.909 0.00 0.00 0.00 4.57
886 901 3.382546 AGATATGAATTGCCTGTTGTGCC 59.617 43.478 0.00 0.00 0.00 5.01
887 902 1.636148 ATGAATTGCCTGTTGTGCCT 58.364 45.000 0.00 0.00 0.00 4.75
888 903 0.675083 TGAATTGCCTGTTGTGCCTG 59.325 50.000 0.00 0.00 0.00 4.85
889 904 0.961019 GAATTGCCTGTTGTGCCTGA 59.039 50.000 0.00 0.00 0.00 3.86
890 905 0.963962 AATTGCCTGTTGTGCCTGAG 59.036 50.000 0.00 0.00 0.00 3.35
891 906 0.896940 ATTGCCTGTTGTGCCTGAGG 60.897 55.000 0.00 0.00 0.00 3.86
892 907 2.674380 GCCTGTTGTGCCTGAGGG 60.674 66.667 0.00 0.00 0.00 4.30
893 908 2.839098 CCTGTTGTGCCTGAGGGT 59.161 61.111 0.00 0.00 34.45 4.34
894 909 1.151450 CCTGTTGTGCCTGAGGGTT 59.849 57.895 0.00 0.00 34.45 4.11
895 910 0.400213 CCTGTTGTGCCTGAGGGTTA 59.600 55.000 0.00 0.00 34.45 2.85
896 911 1.004745 CCTGTTGTGCCTGAGGGTTAT 59.995 52.381 0.00 0.00 34.45 1.89
897 912 2.086869 CTGTTGTGCCTGAGGGTTATG 58.913 52.381 0.00 0.00 34.45 1.90
898 913 1.423541 TGTTGTGCCTGAGGGTTATGT 59.576 47.619 0.00 0.00 34.45 2.29
899 914 2.158534 TGTTGTGCCTGAGGGTTATGTT 60.159 45.455 0.00 0.00 34.45 2.71
900 915 3.073209 TGTTGTGCCTGAGGGTTATGTTA 59.927 43.478 0.00 0.00 34.45 2.41
901 916 4.263727 TGTTGTGCCTGAGGGTTATGTTAT 60.264 41.667 0.00 0.00 34.45 1.89
902 917 3.884895 TGTGCCTGAGGGTTATGTTATG 58.115 45.455 0.00 0.00 34.45 1.90
903 918 3.214328 GTGCCTGAGGGTTATGTTATGG 58.786 50.000 0.00 0.00 34.45 2.74
904 919 3.118038 GTGCCTGAGGGTTATGTTATGGA 60.118 47.826 0.00 0.00 34.45 3.41
905 920 3.721575 TGCCTGAGGGTTATGTTATGGAT 59.278 43.478 0.00 0.00 34.45 3.41
906 921 4.074970 GCCTGAGGGTTATGTTATGGATG 58.925 47.826 0.00 0.00 34.45 3.51
907 922 4.202461 GCCTGAGGGTTATGTTATGGATGA 60.202 45.833 0.00 0.00 34.45 2.92
908 923 5.690097 GCCTGAGGGTTATGTTATGGATGAA 60.690 44.000 0.00 0.00 34.45 2.57
909 924 6.000219 CCTGAGGGTTATGTTATGGATGAAG 59.000 44.000 0.00 0.00 0.00 3.02
910 925 6.183361 CCTGAGGGTTATGTTATGGATGAAGA 60.183 42.308 0.00 0.00 0.00 2.87
911 926 7.206789 TGAGGGTTATGTTATGGATGAAGAA 57.793 36.000 0.00 0.00 0.00 2.52
912 927 7.638444 TGAGGGTTATGTTATGGATGAAGAAA 58.362 34.615 0.00 0.00 0.00 2.52
913 928 7.556275 TGAGGGTTATGTTATGGATGAAGAAAC 59.444 37.037 0.00 0.00 0.00 2.78
914 929 7.643123 AGGGTTATGTTATGGATGAAGAAACT 58.357 34.615 0.00 0.00 0.00 2.66
915 930 7.557719 AGGGTTATGTTATGGATGAAGAAACTG 59.442 37.037 0.00 0.00 0.00 3.16
916 931 7.196331 GGTTATGTTATGGATGAAGAAACTGC 58.804 38.462 0.00 0.00 0.00 4.40
917 932 7.067494 GGTTATGTTATGGATGAAGAAACTGCT 59.933 37.037 0.00 0.00 0.00 4.24
918 933 9.109393 GTTATGTTATGGATGAAGAAACTGCTA 57.891 33.333 0.00 0.00 0.00 3.49
919 934 7.798596 ATGTTATGGATGAAGAAACTGCTAG 57.201 36.000 0.00 0.00 0.00 3.42
920 935 6.946340 TGTTATGGATGAAGAAACTGCTAGA 58.054 36.000 0.00 0.00 0.00 2.43
921 936 7.044181 TGTTATGGATGAAGAAACTGCTAGAG 58.956 38.462 0.00 0.00 0.00 2.43
922 937 5.946942 ATGGATGAAGAAACTGCTAGAGA 57.053 39.130 0.00 0.00 0.00 3.10
923 938 5.078411 TGGATGAAGAAACTGCTAGAGAC 57.922 43.478 0.00 0.00 0.00 3.36
924 939 4.774726 TGGATGAAGAAACTGCTAGAGACT 59.225 41.667 0.00 0.00 0.00 3.24
925 940 5.247110 TGGATGAAGAAACTGCTAGAGACTT 59.753 40.000 0.00 0.00 0.00 3.01
926 941 6.169800 GGATGAAGAAACTGCTAGAGACTTT 58.830 40.000 0.00 0.00 0.00 2.66
927 942 6.312672 GGATGAAGAAACTGCTAGAGACTTTC 59.687 42.308 0.00 0.00 0.00 2.62
928 943 6.412362 TGAAGAAACTGCTAGAGACTTTCT 57.588 37.500 0.00 0.00 40.06 2.52
929 944 6.821388 TGAAGAAACTGCTAGAGACTTTCTT 58.179 36.000 13.44 13.44 41.61 2.52
930 945 6.703607 TGAAGAAACTGCTAGAGACTTTCTTG 59.296 38.462 16.38 0.00 39.91 3.02
935 950 3.738286 GCTAGAGACTTTCTTGCTTGC 57.262 47.619 0.00 0.00 46.78 4.01
936 951 3.070018 GCTAGAGACTTTCTTGCTTGCA 58.930 45.455 0.00 0.00 46.78 4.08
937 952 3.499918 GCTAGAGACTTTCTTGCTTGCAA 59.500 43.478 7.83 7.83 46.78 4.08
938 953 4.155644 GCTAGAGACTTTCTTGCTTGCAAT 59.844 41.667 8.55 0.00 46.78 3.56
939 954 4.500603 AGAGACTTTCTTGCTTGCAATG 57.499 40.909 8.55 3.92 29.61 2.82
940 955 4.139786 AGAGACTTTCTTGCTTGCAATGA 58.860 39.130 8.55 6.05 29.61 2.57
941 956 4.765856 AGAGACTTTCTTGCTTGCAATGAT 59.234 37.500 8.55 0.00 29.61 2.45
942 957 5.942236 AGAGACTTTCTTGCTTGCAATGATA 59.058 36.000 8.55 3.93 29.61 2.15
943 958 6.093771 AGAGACTTTCTTGCTTGCAATGATAG 59.906 38.462 8.55 13.22 29.61 2.08
944 959 5.942236 AGACTTTCTTGCTTGCAATGATAGA 59.058 36.000 19.87 9.56 0.00 1.98
945 960 6.432162 AGACTTTCTTGCTTGCAATGATAGAA 59.568 34.615 19.87 13.35 0.00 2.10
946 961 6.618811 ACTTTCTTGCTTGCAATGATAGAAG 58.381 36.000 19.87 15.65 0.00 2.85
947 962 4.627611 TCTTGCTTGCAATGATAGAAGC 57.372 40.909 8.55 0.00 41.03 3.86
948 963 3.064408 TCTTGCTTGCAATGATAGAAGCG 59.936 43.478 8.55 0.00 43.10 4.68
949 964 2.631267 TGCTTGCAATGATAGAAGCGA 58.369 42.857 0.00 0.00 43.10 4.93
950 965 3.208594 TGCTTGCAATGATAGAAGCGAT 58.791 40.909 0.00 0.00 43.10 4.58
951 966 3.249320 TGCTTGCAATGATAGAAGCGATC 59.751 43.478 0.00 0.00 43.10 3.69
952 967 3.497640 GCTTGCAATGATAGAAGCGATCT 59.502 43.478 0.00 0.72 42.48 2.75
953 968 4.024218 GCTTGCAATGATAGAAGCGATCTT 60.024 41.667 0.00 0.00 39.71 2.40
954 969 5.178252 GCTTGCAATGATAGAAGCGATCTTA 59.822 40.000 0.00 0.00 39.71 2.10
955 970 6.293081 GCTTGCAATGATAGAAGCGATCTTAA 60.293 38.462 0.00 0.00 39.71 1.85
956 971 6.775939 TGCAATGATAGAAGCGATCTTAAG 57.224 37.500 0.00 0.00 39.71 1.85
957 972 6.515832 TGCAATGATAGAAGCGATCTTAAGA 58.484 36.000 7.82 7.82 39.71 2.10
958 973 6.986231 TGCAATGATAGAAGCGATCTTAAGAA 59.014 34.615 9.71 0.00 39.71 2.52
959 974 7.495606 TGCAATGATAGAAGCGATCTTAAGAAA 59.504 33.333 9.71 0.00 39.71 2.52
960 975 8.502387 GCAATGATAGAAGCGATCTTAAGAAAT 58.498 33.333 9.71 0.00 39.71 2.17
968 983 9.771534 AGAAGCGATCTTAAGAAATTATTAGCT 57.228 29.630 9.71 6.30 33.39 3.32
972 987 9.748100 GCGATCTTAAGAAATTATTAGCTAAGC 57.252 33.333 9.71 0.00 0.00 3.09
1004 1019 6.817765 AAAAACTCCGAATGCTAGAATGAA 57.182 33.333 0.00 0.00 0.00 2.57
1005 1020 6.817765 AAAACTCCGAATGCTAGAATGAAA 57.182 33.333 0.00 0.00 0.00 2.69
1006 1021 6.817765 AAACTCCGAATGCTAGAATGAAAA 57.182 33.333 0.00 0.00 0.00 2.29
1007 1022 6.817765 AACTCCGAATGCTAGAATGAAAAA 57.182 33.333 0.00 0.00 0.00 1.94
1027 1042 5.615925 AAAACTCTCGTATAGCATTCCCT 57.384 39.130 0.00 0.00 0.00 4.20
1028 1043 4.857509 AACTCTCGTATAGCATTCCCTC 57.142 45.455 0.00 0.00 0.00 4.30
1029 1044 3.833732 ACTCTCGTATAGCATTCCCTCA 58.166 45.455 0.00 0.00 0.00 3.86
1159 1175 4.390129 TTGTTTATAAACTCCCCAGGCA 57.610 40.909 24.81 3.14 39.59 4.75
1199 1215 4.466567 TGGCTATTTTTGATACGATGCG 57.533 40.909 0.00 0.00 0.00 4.73
1309 1345 1.037493 TATAGCATTCCCTCACGCGT 58.963 50.000 5.58 5.58 0.00 6.01
2001 2159 6.371595 TCCTTTGGTGCAAATCCAATTATT 57.628 33.333 7.99 0.00 43.25 1.40
2119 2814 9.729281 TCCTTTATGTTAAAAGAACGGACTAAT 57.271 29.630 0.00 0.00 38.50 1.73
2246 2941 8.322906 CAAAGAATGTGGACTATACAAGTTCA 57.677 34.615 0.00 0.00 41.76 3.18
2596 3324 2.032377 GGAGACGACGAACAAAAATGCA 60.032 45.455 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.901793 AGATTTCTTTGCATCTTCTTAATCCTC 58.098 33.333 0.00 0.00 0.00 3.71
9 10 9.458727 TCTTTCATAGATTTCTTTGCATCTTCT 57.541 29.630 0.00 0.00 31.89 2.85
14 15 9.649167 CCTTTTCTTTCATAGATTTCTTTGCAT 57.351 29.630 0.00 0.00 31.54 3.96
15 16 8.090214 CCCTTTTCTTTCATAGATTTCTTTGCA 58.910 33.333 0.00 0.00 31.54 4.08
16 17 8.090831 ACCCTTTTCTTTCATAGATTTCTTTGC 58.909 33.333 0.00 0.00 31.54 3.68
25 26 9.975218 AGCTTTAATACCCTTTTCTTTCATAGA 57.025 29.630 0.00 0.00 0.00 1.98
27 28 9.747898 TCAGCTTTAATACCCTTTTCTTTCATA 57.252 29.630 0.00 0.00 0.00 2.15
28 29 8.650143 TCAGCTTTAATACCCTTTTCTTTCAT 57.350 30.769 0.00 0.00 0.00 2.57
29 30 8.472007 TTCAGCTTTAATACCCTTTTCTTTCA 57.528 30.769 0.00 0.00 0.00 2.69
30 31 8.793592 TCTTCAGCTTTAATACCCTTTTCTTTC 58.206 33.333 0.00 0.00 0.00 2.62
31 32 8.706322 TCTTCAGCTTTAATACCCTTTTCTTT 57.294 30.769 0.00 0.00 0.00 2.52
32 33 8.743714 CATCTTCAGCTTTAATACCCTTTTCTT 58.256 33.333 0.00 0.00 0.00 2.52
33 34 7.890655 ACATCTTCAGCTTTAATACCCTTTTCT 59.109 33.333 0.00 0.00 0.00 2.52
34 35 8.056407 ACATCTTCAGCTTTAATACCCTTTTC 57.944 34.615 0.00 0.00 0.00 2.29
35 36 8.422577 AACATCTTCAGCTTTAATACCCTTTT 57.577 30.769 0.00 0.00 0.00 2.27
36 37 9.528489 TTAACATCTTCAGCTTTAATACCCTTT 57.472 29.630 0.00 0.00 0.00 3.11
37 38 9.178758 CTTAACATCTTCAGCTTTAATACCCTT 57.821 33.333 0.00 0.00 0.00 3.95
38 39 8.548877 TCTTAACATCTTCAGCTTTAATACCCT 58.451 33.333 0.00 0.00 0.00 4.34
39 40 8.732746 TCTTAACATCTTCAGCTTTAATACCC 57.267 34.615 0.00 0.00 0.00 3.69
46 47 9.301897 AGGTAAATTCTTAACATCTTCAGCTTT 57.698 29.630 0.00 0.00 0.00 3.51
47 48 8.870075 AGGTAAATTCTTAACATCTTCAGCTT 57.130 30.769 0.00 0.00 0.00 3.74
48 49 7.554476 GGAGGTAAATTCTTAACATCTTCAGCT 59.446 37.037 0.00 0.00 0.00 4.24
49 50 7.466050 CGGAGGTAAATTCTTAACATCTTCAGC 60.466 40.741 0.00 0.00 0.00 4.26
50 51 7.910304 CGGAGGTAAATTCTTAACATCTTCAG 58.090 38.462 0.00 0.00 0.00 3.02
51 52 7.843490 CGGAGGTAAATTCTTAACATCTTCA 57.157 36.000 0.00 0.00 0.00 3.02
71 72 4.261801 ACCATGTATTTCTTCAACCGGAG 58.738 43.478 9.46 0.00 0.00 4.63
72 73 4.019681 AGACCATGTATTTCTTCAACCGGA 60.020 41.667 9.46 0.00 0.00 5.14
73 74 4.261801 AGACCATGTATTTCTTCAACCGG 58.738 43.478 0.00 0.00 0.00 5.28
74 75 5.880054 AAGACCATGTATTTCTTCAACCG 57.120 39.130 0.00 0.00 0.00 4.44
79 80 9.931210 CGGTAAATTAAGACCATGTATTTCTTC 57.069 33.333 0.00 0.00 35.26 2.87
80 81 8.403236 GCGGTAAATTAAGACCATGTATTTCTT 58.597 33.333 0.00 0.00 35.26 2.52
81 82 7.012989 GGCGGTAAATTAAGACCATGTATTTCT 59.987 37.037 0.00 0.00 35.26 2.52
82 83 7.012989 AGGCGGTAAATTAAGACCATGTATTTC 59.987 37.037 0.00 0.00 35.26 2.17
83 84 6.831868 AGGCGGTAAATTAAGACCATGTATTT 59.168 34.615 0.00 0.00 35.26 1.40
84 85 6.362248 AGGCGGTAAATTAAGACCATGTATT 58.638 36.000 0.00 0.00 35.26 1.89
85 86 5.937111 AGGCGGTAAATTAAGACCATGTAT 58.063 37.500 0.00 0.00 35.26 2.29
86 87 5.362105 AGGCGGTAAATTAAGACCATGTA 57.638 39.130 0.00 0.00 35.26 2.29
87 88 4.230745 AGGCGGTAAATTAAGACCATGT 57.769 40.909 0.00 0.00 35.26 3.21
88 89 6.485313 TCAATAGGCGGTAAATTAAGACCATG 59.515 38.462 5.29 0.00 35.26 3.66
89 90 6.597562 TCAATAGGCGGTAAATTAAGACCAT 58.402 36.000 5.29 0.00 35.26 3.55
90 91 5.991861 TCAATAGGCGGTAAATTAAGACCA 58.008 37.500 5.29 0.00 35.26 4.02
91 92 6.764560 TCTTCAATAGGCGGTAAATTAAGACC 59.235 38.462 0.00 0.00 0.00 3.85
92 93 7.781548 TCTTCAATAGGCGGTAAATTAAGAC 57.218 36.000 0.00 0.00 0.00 3.01
93 94 8.795842 TTTCTTCAATAGGCGGTAAATTAAGA 57.204 30.769 0.00 0.00 0.00 2.10
96 97 9.616156 TGTATTTCTTCAATAGGCGGTAAATTA 57.384 29.630 0.00 0.00 0.00 1.40
97 98 8.514330 TGTATTTCTTCAATAGGCGGTAAATT 57.486 30.769 0.00 0.00 0.00 1.82
98 99 8.567948 CATGTATTTCTTCAATAGGCGGTAAAT 58.432 33.333 0.00 0.00 0.00 1.40
99 100 7.771361 TCATGTATTTCTTCAATAGGCGGTAAA 59.229 33.333 0.00 0.00 0.00 2.01
100 101 7.276658 TCATGTATTTCTTCAATAGGCGGTAA 58.723 34.615 0.00 0.00 0.00 2.85
101 102 6.822442 TCATGTATTTCTTCAATAGGCGGTA 58.178 36.000 0.00 0.00 0.00 4.02
102 103 5.680619 TCATGTATTTCTTCAATAGGCGGT 58.319 37.500 0.00 0.00 0.00 5.68
103 104 6.808008 ATCATGTATTTCTTCAATAGGCGG 57.192 37.500 0.00 0.00 0.00 6.13
120 121 9.645128 TCAATAGGTGATGGATTAAAATCATGT 57.355 29.630 5.15 0.00 37.15 3.21
123 124 9.919416 TCTTCAATAGGTGATGGATTAAAATCA 57.081 29.630 5.15 0.00 35.70 2.57
127 128 9.527157 TGTTTCTTCAATAGGTGATGGATTAAA 57.473 29.630 0.00 0.00 35.70 1.52
128 129 8.956426 GTGTTTCTTCAATAGGTGATGGATTAA 58.044 33.333 0.00 0.00 35.70 1.40
129 130 8.106462 TGTGTTTCTTCAATAGGTGATGGATTA 58.894 33.333 0.00 0.00 35.70 1.75
130 131 6.947733 TGTGTTTCTTCAATAGGTGATGGATT 59.052 34.615 0.00 0.00 35.70 3.01
131 132 6.484288 TGTGTTTCTTCAATAGGTGATGGAT 58.516 36.000 0.00 0.00 35.70 3.41
132 133 5.875224 TGTGTTTCTTCAATAGGTGATGGA 58.125 37.500 0.00 0.00 35.70 3.41
133 134 6.405065 CCATGTGTTTCTTCAATAGGTGATGG 60.405 42.308 0.00 0.00 35.70 3.51
134 135 6.151648 ACCATGTGTTTCTTCAATAGGTGATG 59.848 38.462 0.00 0.00 35.70 3.07
135 136 6.248433 ACCATGTGTTTCTTCAATAGGTGAT 58.752 36.000 0.00 0.00 35.70 3.06
136 137 5.630121 ACCATGTGTTTCTTCAATAGGTGA 58.370 37.500 0.00 0.00 0.00 4.02
137 138 5.707298 AGACCATGTGTTTCTTCAATAGGTG 59.293 40.000 0.00 0.00 0.00 4.00
138 139 5.880901 AGACCATGTGTTTCTTCAATAGGT 58.119 37.500 0.00 0.00 0.00 3.08
139 140 6.430925 TCAAGACCATGTGTTTCTTCAATAGG 59.569 38.462 0.00 0.00 0.00 2.57
140 141 7.439157 TCAAGACCATGTGTTTCTTCAATAG 57.561 36.000 0.00 0.00 0.00 1.73
141 142 9.513906 TTATCAAGACCATGTGTTTCTTCAATA 57.486 29.630 0.00 0.00 0.00 1.90
142 143 6.906157 ATCAAGACCATGTGTTTCTTCAAT 57.094 33.333 0.00 0.00 0.00 2.57
143 144 7.255451 GGTTATCAAGACCATGTGTTTCTTCAA 60.255 37.037 0.00 0.00 37.14 2.69
144 145 6.206634 GGTTATCAAGACCATGTGTTTCTTCA 59.793 38.462 0.00 0.00 37.14 3.02
145 146 6.349363 GGGTTATCAAGACCATGTGTTTCTTC 60.349 42.308 0.00 0.00 38.98 2.87
146 147 5.476945 GGGTTATCAAGACCATGTGTTTCTT 59.523 40.000 0.00 0.00 38.98 2.52
147 148 5.010282 GGGTTATCAAGACCATGTGTTTCT 58.990 41.667 0.00 0.00 38.98 2.52
148 149 4.142687 CGGGTTATCAAGACCATGTGTTTC 60.143 45.833 0.00 0.00 38.98 2.78
149 150 3.756434 CGGGTTATCAAGACCATGTGTTT 59.244 43.478 0.00 0.00 38.98 2.83
150 151 3.008594 TCGGGTTATCAAGACCATGTGTT 59.991 43.478 0.00 0.00 38.98 3.32
151 152 2.569853 TCGGGTTATCAAGACCATGTGT 59.430 45.455 0.00 0.00 38.98 3.72
152 153 2.936498 GTCGGGTTATCAAGACCATGTG 59.064 50.000 0.00 0.00 38.98 3.21
153 154 2.569853 TGTCGGGTTATCAAGACCATGT 59.430 45.455 0.00 0.00 38.98 3.21
154 155 2.936498 GTGTCGGGTTATCAAGACCATG 59.064 50.000 0.00 0.00 38.98 3.66
155 156 2.569853 TGTGTCGGGTTATCAAGACCAT 59.430 45.455 0.00 0.00 38.98 3.55
156 157 1.972075 TGTGTCGGGTTATCAAGACCA 59.028 47.619 0.00 0.00 38.98 4.02
157 158 2.618053 CTGTGTCGGGTTATCAAGACC 58.382 52.381 0.00 0.00 36.41 3.85
158 159 2.028385 ACCTGTGTCGGGTTATCAAGAC 60.028 50.000 0.00 0.00 40.77 3.01
159 160 2.253610 ACCTGTGTCGGGTTATCAAGA 58.746 47.619 0.00 0.00 40.77 3.02
160 161 2.762535 ACCTGTGTCGGGTTATCAAG 57.237 50.000 0.00 0.00 40.77 3.02
161 162 3.167485 ACTACCTGTGTCGGGTTATCAA 58.833 45.455 5.56 0.00 40.77 2.57
162 163 2.811410 ACTACCTGTGTCGGGTTATCA 58.189 47.619 5.56 0.00 40.77 2.15
163 164 4.989279 TTACTACCTGTGTCGGGTTATC 57.011 45.455 5.56 0.00 40.77 1.75
164 165 4.161001 CCTTTACTACCTGTGTCGGGTTAT 59.839 45.833 5.56 0.00 40.77 1.89
165 166 3.511146 CCTTTACTACCTGTGTCGGGTTA 59.489 47.826 5.56 0.00 40.77 2.85
166 167 2.301009 CCTTTACTACCTGTGTCGGGTT 59.699 50.000 5.56 0.00 40.77 4.11
167 168 1.897802 CCTTTACTACCTGTGTCGGGT 59.102 52.381 5.57 5.57 46.08 5.28
168 169 1.897802 ACCTTTACTACCTGTGTCGGG 59.102 52.381 0.00 0.00 35.68 5.14
169 170 4.789012 TTACCTTTACTACCTGTGTCGG 57.211 45.455 0.00 0.00 0.00 4.79
170 171 7.095270 AGAATTTACCTTTACTACCTGTGTCG 58.905 38.462 0.00 0.00 0.00 4.35
171 172 8.312564 AGAGAATTTACCTTTACTACCTGTGTC 58.687 37.037 0.00 0.00 0.00 3.67
172 173 8.203681 AGAGAATTTACCTTTACTACCTGTGT 57.796 34.615 0.00 0.00 0.00 3.72
173 174 8.532819 AGAGAGAATTTACCTTTACTACCTGTG 58.467 37.037 0.00 0.00 0.00 3.66
174 175 8.667592 AGAGAGAATTTACCTTTACTACCTGT 57.332 34.615 0.00 0.00 0.00 4.00
189 190 9.757227 CCTTCGTCAAATCTATAGAGAGAATTT 57.243 33.333 8.70 0.77 34.35 1.82
190 191 8.919145 ACCTTCGTCAAATCTATAGAGAGAATT 58.081 33.333 8.70 0.00 34.35 2.17
191 192 8.356657 CACCTTCGTCAAATCTATAGAGAGAAT 58.643 37.037 8.70 0.00 34.35 2.40
192 193 7.556635 TCACCTTCGTCAAATCTATAGAGAGAA 59.443 37.037 8.70 6.43 34.35 2.87
193 194 7.054751 TCACCTTCGTCAAATCTATAGAGAGA 58.945 38.462 8.70 3.32 34.35 3.10
194 195 7.265647 TCACCTTCGTCAAATCTATAGAGAG 57.734 40.000 8.70 0.94 34.35 3.20
195 196 7.825331 ATCACCTTCGTCAAATCTATAGAGA 57.175 36.000 8.70 0.00 35.71 3.10
198 199 9.360093 GGAATATCACCTTCGTCAAATCTATAG 57.640 37.037 0.00 0.00 0.00 1.31
199 200 9.090103 AGGAATATCACCTTCGTCAAATCTATA 57.910 33.333 0.00 0.00 33.55 1.31
200 201 7.967908 AGGAATATCACCTTCGTCAAATCTAT 58.032 34.615 0.00 0.00 33.55 1.98
201 202 7.361457 AGGAATATCACCTTCGTCAAATCTA 57.639 36.000 0.00 0.00 33.55 1.98
202 203 6.240549 AGGAATATCACCTTCGTCAAATCT 57.759 37.500 0.00 0.00 33.55 2.40
203 204 5.175856 CGAGGAATATCACCTTCGTCAAATC 59.824 44.000 3.45 0.00 37.36 2.17
204 205 5.050490 CGAGGAATATCACCTTCGTCAAAT 58.950 41.667 3.45 0.00 37.36 2.32
205 206 4.081862 ACGAGGAATATCACCTTCGTCAAA 60.082 41.667 14.23 0.00 37.36 2.69
206 207 3.446161 ACGAGGAATATCACCTTCGTCAA 59.554 43.478 14.23 0.00 37.36 3.18
207 208 3.021695 ACGAGGAATATCACCTTCGTCA 58.978 45.455 14.23 0.00 37.36 4.35
208 209 3.712091 ACGAGGAATATCACCTTCGTC 57.288 47.619 14.23 0.00 37.00 4.20
209 210 5.786264 ATAACGAGGAATATCACCTTCGT 57.214 39.130 14.23 14.23 40.21 3.85
210 211 7.368833 ACTTATAACGAGGAATATCACCTTCG 58.631 38.462 0.00 9.54 37.93 3.79
211 212 8.578151 AGACTTATAACGAGGAATATCACCTTC 58.422 37.037 0.00 0.00 37.93 3.46
212 213 8.361139 CAGACTTATAACGAGGAATATCACCTT 58.639 37.037 0.00 0.00 37.93 3.50
213 214 7.524038 GCAGACTTATAACGAGGAATATCACCT 60.524 40.741 0.00 1.68 40.80 4.00
214 215 6.586844 GCAGACTTATAACGAGGAATATCACC 59.413 42.308 0.00 0.00 0.00 4.02
215 216 7.371936 AGCAGACTTATAACGAGGAATATCAC 58.628 38.462 0.00 0.00 0.00 3.06
216 217 7.526142 AGCAGACTTATAACGAGGAATATCA 57.474 36.000 0.00 0.00 0.00 2.15
217 218 7.698970 GCTAGCAGACTTATAACGAGGAATATC 59.301 40.741 10.63 0.00 0.00 1.63
218 219 7.363094 GGCTAGCAGACTTATAACGAGGAATAT 60.363 40.741 18.24 0.00 0.00 1.28
219 220 6.072064 GGCTAGCAGACTTATAACGAGGAATA 60.072 42.308 18.24 0.00 0.00 1.75
220 221 5.279056 GGCTAGCAGACTTATAACGAGGAAT 60.279 44.000 18.24 0.00 0.00 3.01
221 222 4.037684 GGCTAGCAGACTTATAACGAGGAA 59.962 45.833 18.24 0.00 0.00 3.36
222 223 3.568853 GGCTAGCAGACTTATAACGAGGA 59.431 47.826 18.24 0.00 0.00 3.71
223 224 3.318275 TGGCTAGCAGACTTATAACGAGG 59.682 47.826 18.24 0.00 0.00 4.63
224 225 4.569761 TGGCTAGCAGACTTATAACGAG 57.430 45.455 18.24 0.00 0.00 4.18
225 226 4.994907 TTGGCTAGCAGACTTATAACGA 57.005 40.909 18.24 0.00 0.00 3.85
226 227 4.084328 GCATTGGCTAGCAGACTTATAACG 60.084 45.833 18.24 0.00 36.96 3.18
227 228 5.349824 GCATTGGCTAGCAGACTTATAAC 57.650 43.478 18.24 0.00 36.96 1.89
242 243 4.970662 TCAAACTCATCTAAGCATTGGC 57.029 40.909 0.00 0.00 41.61 4.52
266 267 9.883142 TGAAGTTTTCCTGTTTGACAATAAAAT 57.117 25.926 0.00 0.00 30.02 1.82
267 268 9.712305 TTGAAGTTTTCCTGTTTGACAATAAAA 57.288 25.926 0.00 0.00 0.00 1.52
268 269 9.883142 ATTGAAGTTTTCCTGTTTGACAATAAA 57.117 25.926 0.00 0.00 0.00 1.40
269 270 9.311916 CATTGAAGTTTTCCTGTTTGACAATAA 57.688 29.630 0.00 0.00 0.00 1.40
270 271 7.437862 GCATTGAAGTTTTCCTGTTTGACAATA 59.562 33.333 0.00 0.00 0.00 1.90
271 272 6.258507 GCATTGAAGTTTTCCTGTTTGACAAT 59.741 34.615 0.00 0.00 0.00 2.71
272 273 5.580297 GCATTGAAGTTTTCCTGTTTGACAA 59.420 36.000 0.00 0.00 0.00 3.18
273 274 5.105392 AGCATTGAAGTTTTCCTGTTTGACA 60.105 36.000 0.00 0.00 0.00 3.58
274 275 5.351458 AGCATTGAAGTTTTCCTGTTTGAC 58.649 37.500 0.00 0.00 0.00 3.18
275 276 5.596836 AGCATTGAAGTTTTCCTGTTTGA 57.403 34.783 0.00 0.00 0.00 2.69
276 277 7.439056 ACATAAGCATTGAAGTTTTCCTGTTTG 59.561 33.333 0.00 0.00 0.00 2.93
277 278 7.500141 ACATAAGCATTGAAGTTTTCCTGTTT 58.500 30.769 0.00 0.00 0.00 2.83
278 279 7.054491 ACATAAGCATTGAAGTTTTCCTGTT 57.946 32.000 0.00 0.00 0.00 3.16
279 280 6.655078 ACATAAGCATTGAAGTTTTCCTGT 57.345 33.333 0.00 0.00 0.00 4.00
280 281 6.366877 CCAACATAAGCATTGAAGTTTTCCTG 59.633 38.462 0.00 0.00 0.00 3.86
281 282 6.041979 ACCAACATAAGCATTGAAGTTTTCCT 59.958 34.615 0.00 0.00 0.00 3.36
282 283 6.223120 ACCAACATAAGCATTGAAGTTTTCC 58.777 36.000 0.00 0.00 0.00 3.13
283 284 8.986477 ATACCAACATAAGCATTGAAGTTTTC 57.014 30.769 0.00 0.00 0.00 2.29
284 285 9.855021 GTATACCAACATAAGCATTGAAGTTTT 57.145 29.630 0.00 0.00 0.00 2.43
285 286 9.019656 TGTATACCAACATAAGCATTGAAGTTT 57.980 29.630 0.00 0.00 0.00 2.66
286 287 8.574251 TGTATACCAACATAAGCATTGAAGTT 57.426 30.769 0.00 0.00 0.00 2.66
287 288 8.574251 TTGTATACCAACATAAGCATTGAAGT 57.426 30.769 0.00 0.00 0.00 3.01
289 290 9.800433 CAATTGTATACCAACATAAGCATTGAA 57.200 29.630 0.00 0.00 35.44 2.69
290 291 9.183368 TCAATTGTATACCAACATAAGCATTGA 57.817 29.630 5.13 0.00 35.44 2.57
291 292 9.800433 TTCAATTGTATACCAACATAAGCATTG 57.200 29.630 5.13 0.00 35.44 2.82
293 294 9.801873 GTTTCAATTGTATACCAACATAAGCAT 57.198 29.630 5.13 0.00 35.44 3.79
294 295 8.797438 TGTTTCAATTGTATACCAACATAAGCA 58.203 29.630 5.13 0.00 35.44 3.91
295 296 9.072294 GTGTTTCAATTGTATACCAACATAAGC 57.928 33.333 5.13 0.00 35.44 3.09
299 300 9.421806 CATTGTGTTTCAATTGTATACCAACAT 57.578 29.630 5.13 0.00 43.33 2.71
300 301 7.383572 GCATTGTGTTTCAATTGTATACCAACA 59.616 33.333 5.13 4.16 43.33 3.33
301 302 7.598493 AGCATTGTGTTTCAATTGTATACCAAC 59.402 33.333 5.13 1.82 43.33 3.77
302 303 7.665690 AGCATTGTGTTTCAATTGTATACCAA 58.334 30.769 5.13 5.39 43.33 3.67
303 304 7.225784 AGCATTGTGTTTCAATTGTATACCA 57.774 32.000 5.13 0.00 43.33 3.25
304 305 9.801873 ATAAGCATTGTGTTTCAATTGTATACC 57.198 29.630 5.13 0.00 43.33 2.73
314 315 9.571810 GTTCAATCATATAAGCATTGTGTTTCA 57.428 29.630 0.00 0.00 0.00 2.69
315 316 9.571810 TGTTCAATCATATAAGCATTGTGTTTC 57.428 29.630 0.00 0.00 0.00 2.78
316 317 9.357652 GTGTTCAATCATATAAGCATTGTGTTT 57.642 29.630 0.00 0.00 0.00 2.83
317 318 8.742777 AGTGTTCAATCATATAAGCATTGTGTT 58.257 29.630 0.00 0.00 0.00 3.32
318 319 8.284945 AGTGTTCAATCATATAAGCATTGTGT 57.715 30.769 0.00 0.00 0.00 3.72
319 320 9.016623 CAAGTGTTCAATCATATAAGCATTGTG 57.983 33.333 0.00 0.00 0.00 3.33
320 321 8.192774 CCAAGTGTTCAATCATATAAGCATTGT 58.807 33.333 0.00 0.00 0.00 2.71
321 322 7.650504 CCCAAGTGTTCAATCATATAAGCATTG 59.349 37.037 0.00 0.00 0.00 2.82
322 323 7.342799 ACCCAAGTGTTCAATCATATAAGCATT 59.657 33.333 0.00 0.00 0.00 3.56
323 324 6.835488 ACCCAAGTGTTCAATCATATAAGCAT 59.165 34.615 0.00 0.00 0.00 3.79
324 325 6.095300 CACCCAAGTGTTCAATCATATAAGCA 59.905 38.462 0.00 0.00 39.30 3.91
325 326 6.318648 TCACCCAAGTGTTCAATCATATAAGC 59.681 38.462 0.00 0.00 44.83 3.09
326 327 7.864108 TCACCCAAGTGTTCAATCATATAAG 57.136 36.000 0.00 0.00 44.83 1.73
327 328 8.821686 AATCACCCAAGTGTTCAATCATATAA 57.178 30.769 0.00 0.00 44.83 0.98
331 332 8.853126 CATATAATCACCCAAGTGTTCAATCAT 58.147 33.333 0.00 0.00 44.83 2.45
332 333 7.833682 ACATATAATCACCCAAGTGTTCAATCA 59.166 33.333 0.00 0.00 44.83 2.57
333 334 8.225603 ACATATAATCACCCAAGTGTTCAATC 57.774 34.615 0.00 0.00 44.83 2.67
334 335 8.055181 AGACATATAATCACCCAAGTGTTCAAT 58.945 33.333 0.00 0.00 44.83 2.57
335 336 7.402054 AGACATATAATCACCCAAGTGTTCAA 58.598 34.615 0.00 0.00 44.83 2.69
336 337 6.957631 AGACATATAATCACCCAAGTGTTCA 58.042 36.000 0.00 0.00 44.83 3.18
337 338 8.421784 TCTAGACATATAATCACCCAAGTGTTC 58.578 37.037 0.00 0.00 44.83 3.18
338 339 8.319057 TCTAGACATATAATCACCCAAGTGTT 57.681 34.615 0.00 0.00 44.83 3.32
339 340 7.565398 ACTCTAGACATATAATCACCCAAGTGT 59.435 37.037 0.00 0.00 44.83 3.55
340 341 7.957002 ACTCTAGACATATAATCACCCAAGTG 58.043 38.462 0.00 0.00 46.00 3.16
341 342 8.554490 AACTCTAGACATATAATCACCCAAGT 57.446 34.615 0.00 0.00 0.00 3.16
345 346 9.930693 CCTTTAACTCTAGACATATAATCACCC 57.069 37.037 0.00 0.00 0.00 4.61
356 357 9.538508 GTTTAAGTTCACCTTTAACTCTAGACA 57.461 33.333 0.00 0.00 38.84 3.41
357 358 9.761504 AGTTTAAGTTCACCTTTAACTCTAGAC 57.238 33.333 0.00 0.00 45.26 2.59
385 386 9.338622 GGTAACCATAGAAGCATGTTTACTAAT 57.661 33.333 0.00 0.00 35.37 1.73
386 387 8.322828 TGGTAACCATAGAAGCATGTTTACTAA 58.677 33.333 0.00 0.00 35.37 2.24
387 388 7.767198 GTGGTAACCATAGAAGCATGTTTACTA 59.233 37.037 0.00 0.00 35.37 1.82
388 389 6.598064 GTGGTAACCATAGAAGCATGTTTACT 59.402 38.462 0.00 0.00 35.37 2.24
389 390 6.598064 AGTGGTAACCATAGAAGCATGTTTAC 59.402 38.462 0.00 0.00 34.68 2.01
390 391 6.717289 AGTGGTAACCATAGAAGCATGTTTA 58.283 36.000 0.00 0.00 35.28 2.01
391 392 5.570320 AGTGGTAACCATAGAAGCATGTTT 58.430 37.500 0.00 0.00 35.28 2.83
392 393 5.179452 AGTGGTAACCATAGAAGCATGTT 57.821 39.130 0.00 0.00 35.28 2.71
393 394 4.225042 TGAGTGGTAACCATAGAAGCATGT 59.775 41.667 0.00 0.00 35.28 3.21
394 395 4.769688 TGAGTGGTAACCATAGAAGCATG 58.230 43.478 0.00 0.00 35.28 4.06
395 396 5.045578 ACTTGAGTGGTAACCATAGAAGCAT 60.046 40.000 0.00 0.00 35.28 3.79
396 397 4.286032 ACTTGAGTGGTAACCATAGAAGCA 59.714 41.667 0.00 0.00 35.28 3.91
397 398 4.833390 ACTTGAGTGGTAACCATAGAAGC 58.167 43.478 0.00 0.00 35.28 3.86
398 399 7.406031 TCTACTTGAGTGGTAACCATAGAAG 57.594 40.000 0.00 0.00 35.28 2.85
399 400 7.233962 TGTTCTACTTGAGTGGTAACCATAGAA 59.766 37.037 0.00 0.00 35.28 2.10
400 401 6.722590 TGTTCTACTTGAGTGGTAACCATAGA 59.277 38.462 0.00 0.00 35.28 1.98
401 402 6.931838 TGTTCTACTTGAGTGGTAACCATAG 58.068 40.000 0.00 0.00 35.28 2.23
402 403 6.921486 TGTTCTACTTGAGTGGTAACCATA 57.079 37.500 0.00 0.00 35.28 2.74
403 404 5.818678 TGTTCTACTTGAGTGGTAACCAT 57.181 39.130 0.00 0.00 35.28 3.55
404 405 5.129815 ACTTGTTCTACTTGAGTGGTAACCA 59.870 40.000 0.00 0.00 0.00 3.67
405 406 5.608449 ACTTGTTCTACTTGAGTGGTAACC 58.392 41.667 0.00 0.00 0.00 2.85
406 407 7.432059 AGTACTTGTTCTACTTGAGTGGTAAC 58.568 38.462 0.00 0.00 0.00 2.50
407 408 7.592885 AGTACTTGTTCTACTTGAGTGGTAA 57.407 36.000 0.00 0.00 0.00 2.85
408 409 7.592885 AAGTACTTGTTCTACTTGAGTGGTA 57.407 36.000 7.48 0.00 33.92 3.25
409 410 6.481434 AAGTACTTGTTCTACTTGAGTGGT 57.519 37.500 7.48 0.00 33.92 4.16
410 411 8.882415 TTTAAGTACTTGTTCTACTTGAGTGG 57.118 34.615 18.56 0.00 35.61 4.00
411 412 8.488764 GCTTTAAGTACTTGTTCTACTTGAGTG 58.511 37.037 18.56 0.00 35.61 3.51
412 413 8.422566 AGCTTTAAGTACTTGTTCTACTTGAGT 58.577 33.333 18.56 0.00 35.61 3.41
413 414 8.819643 AGCTTTAAGTACTTGTTCTACTTGAG 57.180 34.615 18.56 2.75 35.61 3.02
414 415 8.418662 TGAGCTTTAAGTACTTGTTCTACTTGA 58.581 33.333 18.56 0.00 35.61 3.02
415 416 8.589335 TGAGCTTTAAGTACTTGTTCTACTTG 57.411 34.615 18.56 0.08 35.61 3.16
416 417 8.639761 TCTGAGCTTTAAGTACTTGTTCTACTT 58.360 33.333 18.56 0.00 37.96 2.24
417 418 8.179509 TCTGAGCTTTAAGTACTTGTTCTACT 57.820 34.615 18.56 7.74 0.00 2.57
418 419 8.813643 TTCTGAGCTTTAAGTACTTGTTCTAC 57.186 34.615 18.56 6.55 0.00 2.59
419 420 9.424319 CATTCTGAGCTTTAAGTACTTGTTCTA 57.576 33.333 18.56 0.00 0.00 2.10
420 421 8.150945 TCATTCTGAGCTTTAAGTACTTGTTCT 58.849 33.333 18.56 9.37 0.00 3.01
421 422 8.311650 TCATTCTGAGCTTTAAGTACTTGTTC 57.688 34.615 18.56 9.47 0.00 3.18
422 423 8.854614 ATCATTCTGAGCTTTAAGTACTTGTT 57.145 30.769 18.56 0.00 0.00 2.83
423 424 8.854614 AATCATTCTGAGCTTTAAGTACTTGT 57.145 30.769 18.56 0.00 0.00 3.16
424 425 9.552114 CAAATCATTCTGAGCTTTAAGTACTTG 57.448 33.333 18.56 2.68 0.00 3.16
425 426 8.239998 GCAAATCATTCTGAGCTTTAAGTACTT 58.760 33.333 13.68 13.68 0.00 2.24
426 427 7.609532 AGCAAATCATTCTGAGCTTTAAGTACT 59.390 33.333 0.00 0.00 0.00 2.73
427 428 7.756558 AGCAAATCATTCTGAGCTTTAAGTAC 58.243 34.615 0.00 0.00 0.00 2.73
428 429 7.607607 TGAGCAAATCATTCTGAGCTTTAAGTA 59.392 33.333 0.00 0.00 31.12 2.24
429 430 6.432162 TGAGCAAATCATTCTGAGCTTTAAGT 59.568 34.615 0.00 0.00 31.12 2.24
430 431 6.849502 TGAGCAAATCATTCTGAGCTTTAAG 58.150 36.000 0.00 0.00 31.12 1.85
431 432 6.822667 TGAGCAAATCATTCTGAGCTTTAA 57.177 33.333 0.00 0.00 31.12 1.52
432 433 6.822667 TTGAGCAAATCATTCTGAGCTTTA 57.177 33.333 0.00 0.00 37.89 1.85
433 434 5.717078 TTGAGCAAATCATTCTGAGCTTT 57.283 34.783 0.00 0.00 37.89 3.51
434 435 5.417894 TCATTGAGCAAATCATTCTGAGCTT 59.582 36.000 0.00 0.00 37.89 3.74
435 436 4.948004 TCATTGAGCAAATCATTCTGAGCT 59.052 37.500 0.00 0.00 37.89 4.09
436 437 5.244785 TCATTGAGCAAATCATTCTGAGC 57.755 39.130 0.00 0.00 37.89 4.26
437 438 7.973944 TCAATTCATTGAGCAAATCATTCTGAG 59.026 33.333 0.00 0.00 41.51 3.35
438 439 7.832769 TCAATTCATTGAGCAAATCATTCTGA 58.167 30.769 0.00 0.00 41.51 3.27
439 440 8.474006 TTCAATTCATTGAGCAAATCATTCTG 57.526 30.769 2.57 0.00 46.34 3.02
470 471 8.680903 CCACTCTAACAGCAAAATCATTATTCT 58.319 33.333 0.00 0.00 0.00 2.40
471 472 8.677300 TCCACTCTAACAGCAAAATCATTATTC 58.323 33.333 0.00 0.00 0.00 1.75
472 473 8.579850 TCCACTCTAACAGCAAAATCATTATT 57.420 30.769 0.00 0.00 0.00 1.40
473 474 7.201767 GCTCCACTCTAACAGCAAAATCATTAT 60.202 37.037 0.00 0.00 0.00 1.28
474 475 6.094048 GCTCCACTCTAACAGCAAAATCATTA 59.906 38.462 0.00 0.00 0.00 1.90
475 476 5.105997 GCTCCACTCTAACAGCAAAATCATT 60.106 40.000 0.00 0.00 0.00 2.57
476 477 4.397417 GCTCCACTCTAACAGCAAAATCAT 59.603 41.667 0.00 0.00 0.00 2.45
477 478 3.753272 GCTCCACTCTAACAGCAAAATCA 59.247 43.478 0.00 0.00 0.00 2.57
478 479 3.753272 TGCTCCACTCTAACAGCAAAATC 59.247 43.478 0.00 0.00 38.93 2.17
479 480 3.754965 TGCTCCACTCTAACAGCAAAAT 58.245 40.909 0.00 0.00 38.93 1.82
480 481 3.207265 TGCTCCACTCTAACAGCAAAA 57.793 42.857 0.00 0.00 38.93 2.44
481 482 2.928801 TGCTCCACTCTAACAGCAAA 57.071 45.000 0.00 0.00 38.93 3.68
482 483 3.679917 GCTATGCTCCACTCTAACAGCAA 60.680 47.826 0.00 0.00 44.78 3.91
483 484 2.159043 GCTATGCTCCACTCTAACAGCA 60.159 50.000 0.00 0.00 45.65 4.41
484 485 2.102252 AGCTATGCTCCACTCTAACAGC 59.898 50.000 0.00 0.00 30.62 4.40
566 568 8.587952 AGTTGAGGGATAAATTTTTGTTTTCG 57.412 30.769 0.00 0.00 0.00 3.46
600 602 3.493524 GCTAGATGGCAGTTCCTTACCTC 60.494 52.174 0.00 0.00 35.26 3.85
621 623 0.886563 AGGCAAATCAAGTGCAGAGC 59.113 50.000 0.00 0.00 44.07 4.09
636 638 3.820557 AGCTTACTCAAAACAGAAGGCA 58.179 40.909 0.00 0.00 0.00 4.75
637 639 4.540824 CAAGCTTACTCAAAACAGAAGGC 58.459 43.478 0.00 0.00 0.00 4.35
678 680 9.911980 CATGCGACATATTAGAATTAATAGCAG 57.088 33.333 0.00 0.00 34.98 4.24
692 694 7.025365 GCATCATCAATAACATGCGACATATT 58.975 34.615 0.00 0.00 32.83 1.28
738 753 7.426410 GCACAGTAGTATCAAGCATAGAAGTA 58.574 38.462 0.00 0.00 0.00 2.24
745 760 3.198635 AGTGGCACAGTAGTATCAAGCAT 59.801 43.478 21.41 0.00 42.13 3.79
746 761 2.567169 AGTGGCACAGTAGTATCAAGCA 59.433 45.455 21.41 0.00 42.13 3.91
747 762 3.252974 AGTGGCACAGTAGTATCAAGC 57.747 47.619 21.41 0.00 42.13 4.01
748 763 3.935203 CCAAGTGGCACAGTAGTATCAAG 59.065 47.826 21.41 0.00 43.84 3.02
749 764 3.326588 ACCAAGTGGCACAGTAGTATCAA 59.673 43.478 21.41 0.00 43.84 2.57
750 765 2.903784 ACCAAGTGGCACAGTAGTATCA 59.096 45.455 21.41 0.00 43.84 2.15
751 766 3.056107 TCACCAAGTGGCACAGTAGTATC 60.056 47.826 21.41 0.00 43.84 2.24
752 767 2.903784 TCACCAAGTGGCACAGTAGTAT 59.096 45.455 21.41 0.00 43.84 2.12
753 768 2.321719 TCACCAAGTGGCACAGTAGTA 58.678 47.619 21.41 0.00 43.84 1.82
754 769 1.128200 TCACCAAGTGGCACAGTAGT 58.872 50.000 21.41 8.54 43.84 2.73
755 770 2.254546 TTCACCAAGTGGCACAGTAG 57.745 50.000 21.41 7.87 43.84 2.57
756 771 2.949177 ATTCACCAAGTGGCACAGTA 57.051 45.000 21.41 0.61 43.84 2.74
758 773 2.624838 AGAAATTCACCAAGTGGCACAG 59.375 45.455 21.41 11.69 41.80 3.66
759 774 2.665165 AGAAATTCACCAAGTGGCACA 58.335 42.857 21.41 0.00 39.32 4.57
760 775 3.068024 TCAAGAAATTCACCAAGTGGCAC 59.932 43.478 10.29 10.29 39.32 5.01
761 776 3.295093 TCAAGAAATTCACCAAGTGGCA 58.705 40.909 0.00 0.00 39.32 4.92
762 777 4.022068 TCATCAAGAAATTCACCAAGTGGC 60.022 41.667 0.00 0.00 39.32 5.01
763 778 5.710513 TCATCAAGAAATTCACCAAGTGG 57.289 39.130 0.00 0.00 42.17 4.00
764 779 6.506147 TGTTCATCAAGAAATTCACCAAGTG 58.494 36.000 0.00 0.00 38.13 3.16
840 855 4.725810 AGGGGAGAATCTTCATCATCACTT 59.274 41.667 0.00 0.00 33.73 3.16
843 858 5.720162 TCTAGGGGAGAATCTTCATCATCA 58.280 41.667 0.00 0.00 33.73 3.07
855 870 5.013495 CAGGCAATTCATATCTAGGGGAGAA 59.987 44.000 0.00 0.00 37.85 2.87
863 878 4.580167 GGCACAACAGGCAATTCATATCTA 59.420 41.667 0.00 0.00 0.00 1.98
864 879 3.382546 GGCACAACAGGCAATTCATATCT 59.617 43.478 0.00 0.00 0.00 1.98
865 880 3.382546 AGGCACAACAGGCAATTCATATC 59.617 43.478 0.00 0.00 36.37 1.63
866 881 3.131577 CAGGCACAACAGGCAATTCATAT 59.868 43.478 0.00 0.00 36.37 1.78
867 882 2.492881 CAGGCACAACAGGCAATTCATA 59.507 45.455 0.00 0.00 36.37 2.15
868 883 1.274167 CAGGCACAACAGGCAATTCAT 59.726 47.619 0.00 0.00 36.37 2.57
869 884 0.675083 CAGGCACAACAGGCAATTCA 59.325 50.000 0.00 0.00 36.37 2.57
870 885 0.961019 TCAGGCACAACAGGCAATTC 59.039 50.000 0.00 0.00 36.37 2.17
871 886 0.963962 CTCAGGCACAACAGGCAATT 59.036 50.000 0.00 0.00 36.37 2.32
872 887 0.896940 CCTCAGGCACAACAGGCAAT 60.897 55.000 0.00 0.00 36.37 3.56
873 888 1.529010 CCTCAGGCACAACAGGCAA 60.529 57.895 0.00 0.00 36.37 4.52
874 889 2.113774 CCTCAGGCACAACAGGCA 59.886 61.111 0.00 0.00 36.37 4.75
875 890 2.674380 CCCTCAGGCACAACAGGC 60.674 66.667 0.00 0.00 0.00 4.85
876 891 0.400213 TAACCCTCAGGCACAACAGG 59.600 55.000 0.00 0.00 36.11 4.00
877 892 2.086869 CATAACCCTCAGGCACAACAG 58.913 52.381 0.00 0.00 36.11 3.16
878 893 1.423541 ACATAACCCTCAGGCACAACA 59.576 47.619 0.00 0.00 36.11 3.33
879 894 2.200373 ACATAACCCTCAGGCACAAC 57.800 50.000 0.00 0.00 36.11 3.32
880 895 2.969821 AACATAACCCTCAGGCACAA 57.030 45.000 0.00 0.00 36.11 3.33
881 896 3.371487 CCATAACATAACCCTCAGGCACA 60.371 47.826 0.00 0.00 36.11 4.57
882 897 3.118038 TCCATAACATAACCCTCAGGCAC 60.118 47.826 0.00 0.00 36.11 5.01
883 898 3.119319 TCCATAACATAACCCTCAGGCA 58.881 45.455 0.00 0.00 36.11 4.75
884 899 3.857157 TCCATAACATAACCCTCAGGC 57.143 47.619 0.00 0.00 36.11 4.85
885 900 5.567037 TCATCCATAACATAACCCTCAGG 57.433 43.478 0.00 0.00 40.04 3.86
886 901 6.830912 TCTTCATCCATAACATAACCCTCAG 58.169 40.000 0.00 0.00 0.00 3.35
887 902 6.823286 TCTTCATCCATAACATAACCCTCA 57.177 37.500 0.00 0.00 0.00 3.86
888 903 7.775561 AGTTTCTTCATCCATAACATAACCCTC 59.224 37.037 0.00 0.00 0.00 4.30
889 904 7.557719 CAGTTTCTTCATCCATAACATAACCCT 59.442 37.037 0.00 0.00 0.00 4.34
890 905 7.682021 GCAGTTTCTTCATCCATAACATAACCC 60.682 40.741 0.00 0.00 0.00 4.11
891 906 7.067494 AGCAGTTTCTTCATCCATAACATAACC 59.933 37.037 0.00 0.00 0.00 2.85
892 907 7.989826 AGCAGTTTCTTCATCCATAACATAAC 58.010 34.615 0.00 0.00 0.00 1.89
893 908 9.330063 CTAGCAGTTTCTTCATCCATAACATAA 57.670 33.333 0.00 0.00 0.00 1.90
894 909 8.704668 TCTAGCAGTTTCTTCATCCATAACATA 58.295 33.333 0.00 0.00 0.00 2.29
895 910 7.568349 TCTAGCAGTTTCTTCATCCATAACAT 58.432 34.615 0.00 0.00 0.00 2.71
896 911 6.946340 TCTAGCAGTTTCTTCATCCATAACA 58.054 36.000 0.00 0.00 0.00 2.41
897 912 7.223777 GTCTCTAGCAGTTTCTTCATCCATAAC 59.776 40.741 0.00 0.00 0.00 1.89
898 913 7.124901 AGTCTCTAGCAGTTTCTTCATCCATAA 59.875 37.037 0.00 0.00 0.00 1.90
899 914 6.609212 AGTCTCTAGCAGTTTCTTCATCCATA 59.391 38.462 0.00 0.00 0.00 2.74
900 915 5.424895 AGTCTCTAGCAGTTTCTTCATCCAT 59.575 40.000 0.00 0.00 0.00 3.41
901 916 4.774726 AGTCTCTAGCAGTTTCTTCATCCA 59.225 41.667 0.00 0.00 0.00 3.41
902 917 5.337578 AGTCTCTAGCAGTTTCTTCATCC 57.662 43.478 0.00 0.00 0.00 3.51
903 918 7.096551 AGAAAGTCTCTAGCAGTTTCTTCATC 58.903 38.462 14.28 4.78 34.53 2.92
904 919 7.003402 AGAAAGTCTCTAGCAGTTTCTTCAT 57.997 36.000 14.28 0.12 34.53 2.57
905 920 6.412362 AGAAAGTCTCTAGCAGTTTCTTCA 57.588 37.500 14.28 0.00 34.53 3.02
906 921 6.347321 GCAAGAAAGTCTCTAGCAGTTTCTTC 60.347 42.308 22.25 16.73 42.68 2.87
907 922 5.468409 GCAAGAAAGTCTCTAGCAGTTTCTT 59.532 40.000 20.72 20.72 44.44 2.52
908 923 4.994217 GCAAGAAAGTCTCTAGCAGTTTCT 59.006 41.667 14.28 14.28 38.75 2.52
909 924 4.994217 AGCAAGAAAGTCTCTAGCAGTTTC 59.006 41.667 11.31 11.31 32.46 2.78
910 925 4.967036 AGCAAGAAAGTCTCTAGCAGTTT 58.033 39.130 0.00 0.00 32.46 2.66
911 926 4.615588 AGCAAGAAAGTCTCTAGCAGTT 57.384 40.909 0.00 0.00 32.46 3.16
912 927 4.314121 CAAGCAAGAAAGTCTCTAGCAGT 58.686 43.478 0.00 0.00 32.46 4.40
913 928 3.124976 GCAAGCAAGAAAGTCTCTAGCAG 59.875 47.826 0.00 0.00 32.46 4.24
914 929 3.070018 GCAAGCAAGAAAGTCTCTAGCA 58.930 45.455 0.00 0.00 32.46 3.49
915 930 3.070018 TGCAAGCAAGAAAGTCTCTAGC 58.930 45.455 0.00 0.00 32.46 3.42
916 931 5.410746 TCATTGCAAGCAAGAAAGTCTCTAG 59.589 40.000 13.35 0.00 39.47 2.43
917 932 5.308014 TCATTGCAAGCAAGAAAGTCTCTA 58.692 37.500 13.35 0.00 39.47 2.43
918 933 4.139786 TCATTGCAAGCAAGAAAGTCTCT 58.860 39.130 13.35 0.00 39.47 3.10
919 934 4.494350 TCATTGCAAGCAAGAAAGTCTC 57.506 40.909 13.35 0.00 39.47 3.36
920 935 5.942236 TCTATCATTGCAAGCAAGAAAGTCT 59.058 36.000 13.35 0.00 39.47 3.24
921 936 6.187125 TCTATCATTGCAAGCAAGAAAGTC 57.813 37.500 13.35 0.00 39.47 3.01
922 937 6.579666 TTCTATCATTGCAAGCAAGAAAGT 57.420 33.333 13.35 0.00 39.47 2.66
923 938 5.515626 GCTTCTATCATTGCAAGCAAGAAAG 59.484 40.000 13.35 6.19 40.86 2.62
924 939 5.404946 GCTTCTATCATTGCAAGCAAGAAA 58.595 37.500 13.35 1.80 40.86 2.52
925 940 4.437794 CGCTTCTATCATTGCAAGCAAGAA 60.438 41.667 13.35 10.13 41.17 2.52
926 941 3.064408 CGCTTCTATCATTGCAAGCAAGA 59.936 43.478 13.35 10.60 41.17 3.02
927 942 3.064408 TCGCTTCTATCATTGCAAGCAAG 59.936 43.478 13.35 5.89 41.17 4.01
928 943 3.009026 TCGCTTCTATCATTGCAAGCAA 58.991 40.909 10.19 10.19 41.17 3.91
929 944 2.631267 TCGCTTCTATCATTGCAAGCA 58.369 42.857 4.94 0.00 41.17 3.91
930 945 3.497640 AGATCGCTTCTATCATTGCAAGC 59.502 43.478 4.94 0.00 38.31 4.01
931 946 5.670149 AAGATCGCTTCTATCATTGCAAG 57.330 39.130 4.94 0.00 33.05 4.01
932 947 6.986231 TCTTAAGATCGCTTCTATCATTGCAA 59.014 34.615 0.00 0.00 35.56 4.08
933 948 6.515832 TCTTAAGATCGCTTCTATCATTGCA 58.484 36.000 0.00 0.00 35.56 4.08
934 949 7.413475 TTCTTAAGATCGCTTCTATCATTGC 57.587 36.000 5.89 0.00 35.56 3.56
942 957 9.771534 AGCTAATAATTTCTTAAGATCGCTTCT 57.228 29.630 5.89 0.00 35.56 2.85
946 961 9.748100 GCTTAGCTAATAATTTCTTAAGATCGC 57.252 33.333 6.64 0.00 0.00 4.58
981 996 6.817765 TTCATTCTAGCATTCGGAGTTTTT 57.182 33.333 0.00 0.00 0.00 1.94
982 997 6.817765 TTTCATTCTAGCATTCGGAGTTTT 57.182 33.333 0.00 0.00 0.00 2.43
983 998 6.817765 TTTTCATTCTAGCATTCGGAGTTT 57.182 33.333 0.00 0.00 0.00 2.66
984 999 6.817765 TTTTTCATTCTAGCATTCGGAGTT 57.182 33.333 0.00 0.00 0.00 3.01
1004 1019 5.990668 AGGGAATGCTATACGAGAGTTTTT 58.009 37.500 0.00 0.00 46.40 1.94
1005 1020 5.128827 TGAGGGAATGCTATACGAGAGTTTT 59.871 40.000 0.00 0.00 46.40 2.43
1006 1021 4.649674 TGAGGGAATGCTATACGAGAGTTT 59.350 41.667 0.00 0.00 46.40 2.66
1007 1022 4.038162 GTGAGGGAATGCTATACGAGAGTT 59.962 45.833 0.00 0.00 46.40 3.01
1009 1024 3.365465 CGTGAGGGAATGCTATACGAGAG 60.365 52.174 0.00 0.00 32.36 3.20
1010 1025 2.552743 CGTGAGGGAATGCTATACGAGA 59.447 50.000 0.00 0.00 32.36 4.04
1011 1026 2.552743 TCGTGAGGGAATGCTATACGAG 59.447 50.000 0.00 0.00 34.63 4.18
1012 1027 2.552743 CTCGTGAGGGAATGCTATACGA 59.447 50.000 0.00 0.00 37.49 3.43
1013 1028 2.552743 TCTCGTGAGGGAATGCTATACG 59.447 50.000 0.00 0.00 37.93 3.06
1023 1038 0.966920 GTGTCCTTTCTCGTGAGGGA 59.033 55.000 7.03 7.03 40.22 4.20
1024 1039 0.969894 AGTGTCCTTTCTCGTGAGGG 59.030 55.000 0.00 3.24 33.73 4.30
1025 1040 2.821991 AAGTGTCCTTTCTCGTGAGG 57.178 50.000 0.00 0.00 0.00 3.86
1068 1083 7.231519 AGACCTGTAATATGATTCGTGATCTCA 59.768 37.037 0.00 0.00 35.69 3.27
1159 1175 2.441001 CCATTCCTGAGATTAGCCACCT 59.559 50.000 0.00 0.00 0.00 4.00
1199 1215 7.823665 TGTATATATATCTGGTGTCACCGTTC 58.176 38.462 17.27 0.00 42.58 3.95
1309 1345 3.355378 CAGGTTGGTGAAGCATAATCCA 58.645 45.455 0.00 0.00 31.56 3.41
1513 1671 7.073457 TCATTTCATCCCCTACAATATCGAA 57.927 36.000 0.00 0.00 0.00 3.71
1723 1881 6.319399 CGTCGGCATGTTGTATGTATATAGA 58.681 40.000 0.00 0.00 0.00 1.98
1955 2113 9.897040 AGGAAACCATAAATTCCATATACCATT 57.103 29.630 7.25 0.00 46.14 3.16
2101 2796 7.099120 TGACCCTATTAGTCCGTTCTTTTAAC 58.901 38.462 0.00 0.00 33.09 2.01
2246 2941 7.670364 CCCTTTCTTTCATCAAAAGGTATTGT 58.330 34.615 11.10 0.00 44.94 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.