Multiple sequence alignment - TraesCS2D01G270600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G270600 chr2D 100.000 2120 0 0 1 2120 334225934 334223815 0.000000e+00 3916
1 TraesCS2D01G270600 chr2D 97.565 1971 24 8 1 1963 628285679 628283725 0.000000e+00 3352
2 TraesCS2D01G270600 chr6D 97.766 1970 28 8 1 1963 431400038 431398078 0.000000e+00 3380
3 TraesCS2D01G270600 chr1D 97.515 1972 31 9 1 1963 254489713 254487751 0.000000e+00 3354
4 TraesCS2D01G270600 chr1D 94.825 1739 62 13 232 1963 244408395 244406678 0.000000e+00 2687
5 TraesCS2D01G270600 chr3D 97.307 1968 35 9 1 1963 21897566 21895612 0.000000e+00 3325
6 TraesCS2D01G270600 chr3D 98.726 157 2 0 1964 2120 524094798 524094954 1.600000e-71 279
7 TraesCS2D01G270600 chr2A 97.108 1971 48 6 1 1963 276441062 276443031 0.000000e+00 3315
8 TraesCS2D01G270600 chr2A 96.043 1971 53 10 1 1963 335826291 335824338 0.000000e+00 3184
9 TraesCS2D01G270600 chr2A 94.054 185 7 3 1936 2120 541617447 541617267 5.760000e-71 278
10 TraesCS2D01G270600 chr5D 96.916 1978 43 10 1 1963 329131692 329133666 0.000000e+00 3299
11 TraesCS2D01G270600 chr5D 93.750 176 9 1 1942 2117 485978518 485978691 1.610000e-66 263
12 TraesCS2D01G270600 chr5D 94.737 171 6 2 1950 2120 512514199 512514366 1.610000e-66 263
13 TraesCS2D01G270600 chr3B 96.562 1978 45 10 1 1963 201506590 201504621 0.000000e+00 3254
14 TraesCS2D01G270600 chrUn 97.111 727 9 4 1 722 317473177 317473896 0.000000e+00 1216
15 TraesCS2D01G270600 chr7D 95.072 629 22 7 1 622 88605599 88604973 0.000000e+00 981
16 TraesCS2D01G270600 chr7D 98.726 157 2 0 1964 2120 477959487 477959331 1.600000e-71 279
17 TraesCS2D01G270600 chr7D 98.101 158 3 0 1963 2120 355136517 355136360 2.070000e-70 276
18 TraesCS2D01G270600 chr7D 92.896 183 9 3 1939 2120 556926962 556927141 1.610000e-66 263
19 TraesCS2D01G270600 chr4D 98.726 157 2 0 1964 2120 104436184 104436340 1.600000e-71 279
20 TraesCS2D01G270600 chr5A 92.473 186 11 3 1936 2120 618842169 618842352 1.610000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G270600 chr2D 334223815 334225934 2119 True 3916 3916 100.000 1 2120 1 chr2D.!!$R1 2119
1 TraesCS2D01G270600 chr2D 628283725 628285679 1954 True 3352 3352 97.565 1 1963 1 chr2D.!!$R2 1962
2 TraesCS2D01G270600 chr6D 431398078 431400038 1960 True 3380 3380 97.766 1 1963 1 chr6D.!!$R1 1962
3 TraesCS2D01G270600 chr1D 254487751 254489713 1962 True 3354 3354 97.515 1 1963 1 chr1D.!!$R2 1962
4 TraesCS2D01G270600 chr1D 244406678 244408395 1717 True 2687 2687 94.825 232 1963 1 chr1D.!!$R1 1731
5 TraesCS2D01G270600 chr3D 21895612 21897566 1954 True 3325 3325 97.307 1 1963 1 chr3D.!!$R1 1962
6 TraesCS2D01G270600 chr2A 276441062 276443031 1969 False 3315 3315 97.108 1 1963 1 chr2A.!!$F1 1962
7 TraesCS2D01G270600 chr2A 335824338 335826291 1953 True 3184 3184 96.043 1 1963 1 chr2A.!!$R1 1962
8 TraesCS2D01G270600 chr5D 329131692 329133666 1974 False 3299 3299 96.916 1 1963 1 chr5D.!!$F1 1962
9 TraesCS2D01G270600 chr3B 201504621 201506590 1969 True 3254 3254 96.562 1 1963 1 chr3B.!!$R1 1962
10 TraesCS2D01G270600 chrUn 317473177 317473896 719 False 1216 1216 97.111 1 722 1 chrUn.!!$F1 721
11 TraesCS2D01G270600 chr7D 88604973 88605599 626 True 981 981 95.072 1 622 1 chr7D.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 742 2.761767 TGGTCGATCCCATCTTTTACGA 59.238 45.455 0.0 0.0 34.77 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 1642 0.037734 AAATTCCGCGGGTCCTTTCT 59.962 50.0 27.83 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 153 6.049955 TCCAACCAAAGTAGATTCGAAGAT 57.950 37.500 3.35 0.00 35.04 2.40
205 215 6.874278 TCTGTCTTTCCCTATTTCATCTCA 57.126 37.500 0.00 0.00 0.00 3.27
217 227 6.483307 CCTATTTCATCTCATAAAGTTCCGCA 59.517 38.462 0.00 0.00 0.00 5.69
417 428 4.150897 TGGCTGCTATTCCGAATTACTT 57.849 40.909 0.00 0.00 0.00 2.24
465 476 5.658198 AAGTAGAACCTACAAAAAGGGGT 57.342 39.130 6.86 0.00 41.32 4.95
693 742 2.761767 TGGTCGATCCCATCTTTTACGA 59.238 45.455 0.00 0.00 34.77 3.43
735 784 9.936759 TGAATGTATAAAATTTTTGGGAGTTCC 57.063 29.630 9.06 0.00 0.00 3.62
1019 1068 5.453903 CCTCAATGACCATAGATCGAACCTT 60.454 44.000 0.00 0.00 0.00 3.50
1273 1324 9.618890 TTCTTCAATTGAGAGAAAGAAAGAGAA 57.381 29.630 20.92 14.50 0.00 2.87
1371 1422 7.631161 GCATGACCAATTGATAAAATGTGGAGA 60.631 37.037 7.12 0.00 0.00 3.71
1583 1642 4.982241 CCCCCTTTATCTGATTAGAGCA 57.018 45.455 0.00 0.00 36.14 4.26
1633 1692 9.471084 TCTTATAACGCGAATTGAATCTATTCA 57.529 29.630 15.93 1.23 44.42 2.57
1891 1960 7.647907 ATTTGCTCACAATCACAAGAAATTC 57.352 32.000 0.00 0.00 35.21 2.17
1951 2022 4.753610 ACCTCGACTAAACCTAAGCAAAAC 59.246 41.667 0.00 0.00 0.00 2.43
1963 2034 5.420739 ACCTAAGCAAAACAAAAAGAGGTCA 59.579 36.000 0.00 0.00 28.54 4.02
1964 2035 6.098266 ACCTAAGCAAAACAAAAAGAGGTCAT 59.902 34.615 0.00 0.00 28.54 3.06
1965 2036 6.986231 CCTAAGCAAAACAAAAAGAGGTCATT 59.014 34.615 0.00 0.00 0.00 2.57
1966 2037 7.495606 CCTAAGCAAAACAAAAAGAGGTCATTT 59.504 33.333 0.00 0.00 0.00 2.32
1967 2038 7.686438 AAGCAAAACAAAAAGAGGTCATTTT 57.314 28.000 0.00 0.00 0.00 1.82
1968 2039 7.075674 AGCAAAACAAAAAGAGGTCATTTTG 57.924 32.000 15.42 15.42 44.97 2.44
1969 2040 6.878389 AGCAAAACAAAAAGAGGTCATTTTGA 59.122 30.769 21.22 0.00 43.28 2.69
1970 2041 7.064966 AGCAAAACAAAAAGAGGTCATTTTGAG 59.935 33.333 21.22 11.83 43.28 3.02
1971 2042 6.908870 AAACAAAAAGAGGTCATTTTGAGC 57.091 33.333 21.22 1.82 43.28 4.26
1978 2049 1.063031 GGTCATTTTGAGCGCTTTGC 58.937 50.000 13.26 0.00 46.98 3.68
1991 2062 4.019919 GCGCTTTGCTGAAATGATTAGA 57.980 40.909 0.00 0.00 41.73 2.10
1992 2063 3.788163 GCGCTTTGCTGAAATGATTAGAC 59.212 43.478 0.00 0.00 41.73 2.59
1993 2064 4.346129 CGCTTTGCTGAAATGATTAGACC 58.654 43.478 0.00 0.00 0.00 3.85
1994 2065 4.095483 CGCTTTGCTGAAATGATTAGACCT 59.905 41.667 0.00 0.00 0.00 3.85
1995 2066 5.294306 CGCTTTGCTGAAATGATTAGACCTA 59.706 40.000 0.00 0.00 0.00 3.08
1996 2067 6.017605 CGCTTTGCTGAAATGATTAGACCTAT 60.018 38.462 0.00 0.00 0.00 2.57
1997 2068 7.358830 GCTTTGCTGAAATGATTAGACCTATC 58.641 38.462 0.00 0.00 0.00 2.08
1998 2069 7.228308 GCTTTGCTGAAATGATTAGACCTATCT 59.772 37.037 0.00 0.00 39.15 1.98
1999 2070 9.118300 CTTTGCTGAAATGATTAGACCTATCTT 57.882 33.333 0.00 0.00 36.29 2.40
2000 2071 9.466497 TTTGCTGAAATGATTAGACCTATCTTT 57.534 29.630 0.00 0.00 36.29 2.52
2001 2072 9.466497 TTGCTGAAATGATTAGACCTATCTTTT 57.534 29.630 0.00 0.00 36.29 2.27
2002 2073 9.466497 TGCTGAAATGATTAGACCTATCTTTTT 57.534 29.630 0.00 0.00 36.29 1.94
2003 2074 9.727627 GCTGAAATGATTAGACCTATCTTTTTG 57.272 33.333 0.00 0.00 36.29 2.44
2004 2075 9.727627 CTGAAATGATTAGACCTATCTTTTTGC 57.272 33.333 0.00 0.00 36.29 3.68
2005 2076 8.397906 TGAAATGATTAGACCTATCTTTTTGCG 58.602 33.333 0.00 0.00 36.29 4.85
2006 2077 7.865706 AATGATTAGACCTATCTTTTTGCGT 57.134 32.000 0.00 0.00 36.29 5.24
2007 2078 8.958119 AATGATTAGACCTATCTTTTTGCGTA 57.042 30.769 0.00 0.00 36.29 4.42
2008 2079 9.561069 AATGATTAGACCTATCTTTTTGCGTAT 57.439 29.630 0.00 0.00 36.29 3.06
2009 2080 8.365399 TGATTAGACCTATCTTTTTGCGTATG 57.635 34.615 0.00 0.00 36.29 2.39
2010 2081 6.598753 TTAGACCTATCTTTTTGCGTATGC 57.401 37.500 0.00 0.00 37.79 3.14
2011 2082 4.743151 TAGACCTATCTTTTTGCGTATGCG 59.257 41.667 1.78 0.00 39.25 4.73
2012 2083 5.680408 TAGACCTATCTTTTTGCGTATGCGT 60.680 40.000 4.81 0.00 39.25 5.24
2013 2084 7.122483 TAGACCTATCTTTTTGCGTATGCGTT 61.122 38.462 4.81 0.00 39.25 4.84
2014 2085 8.532277 TAGACCTATCTTTTTGCGTATGCGTTT 61.532 37.037 4.81 0.00 39.25 3.60
2025 2096 4.141680 GCGTATGCGTTTAACTGATATGC 58.858 43.478 4.81 9.87 40.81 3.14
2026 2097 4.084537 GCGTATGCGTTTAACTGATATGCT 60.085 41.667 4.81 0.00 40.81 3.79
2027 2098 5.599715 CGTATGCGTTTAACTGATATGCTC 58.400 41.667 0.00 0.00 0.00 4.26
2028 2099 5.174943 CGTATGCGTTTAACTGATATGCTCA 59.825 40.000 0.00 0.00 0.00 4.26
2092 2163 8.434733 ACTAATAAAAGAAAGATACCGGAAGC 57.565 34.615 9.46 0.00 0.00 3.86
2093 2164 8.265764 ACTAATAAAAGAAAGATACCGGAAGCT 58.734 33.333 9.46 0.00 0.00 3.74
2094 2165 6.927294 ATAAAAGAAAGATACCGGAAGCTG 57.073 37.500 9.46 0.00 0.00 4.24
2095 2166 4.553330 AAAGAAAGATACCGGAAGCTGA 57.447 40.909 9.46 0.00 0.00 4.26
2096 2167 4.553330 AAGAAAGATACCGGAAGCTGAA 57.447 40.909 9.46 0.00 0.00 3.02
2097 2168 4.553330 AGAAAGATACCGGAAGCTGAAA 57.447 40.909 9.46 0.00 0.00 2.69
2098 2169 5.104259 AGAAAGATACCGGAAGCTGAAAT 57.896 39.130 9.46 0.00 0.00 2.17
2099 2170 5.501156 AGAAAGATACCGGAAGCTGAAATT 58.499 37.500 9.46 0.00 0.00 1.82
2100 2171 5.946377 AGAAAGATACCGGAAGCTGAAATTT 59.054 36.000 9.46 0.00 0.00 1.82
2101 2172 5.819825 AAGATACCGGAAGCTGAAATTTC 57.180 39.130 9.46 11.41 0.00 2.17
2102 2173 4.200092 AGATACCGGAAGCTGAAATTTCC 58.800 43.478 9.46 1.15 39.56 3.13
2103 2174 2.286365 ACCGGAAGCTGAAATTTCCA 57.714 45.000 9.46 3.32 42.39 3.53
2104 2175 1.886542 ACCGGAAGCTGAAATTTCCAC 59.113 47.619 9.46 7.50 42.39 4.02
2105 2176 1.202348 CCGGAAGCTGAAATTTCCACC 59.798 52.381 15.48 9.98 42.39 4.61
2106 2177 1.885887 CGGAAGCTGAAATTTCCACCA 59.114 47.619 15.48 0.00 42.39 4.17
2107 2178 2.493278 CGGAAGCTGAAATTTCCACCAT 59.507 45.455 15.48 0.00 42.39 3.55
2108 2179 3.674138 CGGAAGCTGAAATTTCCACCATG 60.674 47.826 15.48 0.00 42.39 3.66
2109 2180 3.259123 GGAAGCTGAAATTTCCACCATGT 59.741 43.478 15.48 0.00 41.97 3.21
2110 2181 4.262592 GGAAGCTGAAATTTCCACCATGTT 60.263 41.667 15.48 0.14 41.97 2.71
2111 2182 4.961438 AGCTGAAATTTCCACCATGTTT 57.039 36.364 15.48 0.00 0.00 2.83
2112 2183 4.634199 AGCTGAAATTTCCACCATGTTTG 58.366 39.130 15.48 0.00 0.00 2.93
2113 2184 3.187022 GCTGAAATTTCCACCATGTTTGC 59.813 43.478 15.48 1.67 0.00 3.68
2114 2185 4.634199 CTGAAATTTCCACCATGTTTGCT 58.366 39.130 15.48 0.00 0.00 3.91
2115 2186 5.782047 CTGAAATTTCCACCATGTTTGCTA 58.218 37.500 15.48 0.00 0.00 3.49
2116 2187 6.166984 TGAAATTTCCACCATGTTTGCTAA 57.833 33.333 15.48 0.00 0.00 3.09
2117 2188 6.767456 TGAAATTTCCACCATGTTTGCTAAT 58.233 32.000 15.48 0.00 0.00 1.73
2118 2189 7.222872 TGAAATTTCCACCATGTTTGCTAATT 58.777 30.769 15.48 0.00 0.00 1.40
2119 2190 8.370940 TGAAATTTCCACCATGTTTGCTAATTA 58.629 29.630 15.48 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 153 9.793259 ACTTAAAAGGATAATTGAAGTGACTCA 57.207 29.630 0.00 0.00 0.00 3.41
217 227 2.325583 TTCTTGACCAAACTGCGAGT 57.674 45.000 0.00 0.00 0.00 4.18
388 399 4.776349 TCGGAATAGCAGCCAAAATCTTA 58.224 39.130 0.00 0.00 0.00 2.10
417 428 8.062065 ACTTTTCATTGGCTTCGGAATAATAA 57.938 30.769 0.00 0.00 0.00 1.40
461 472 4.023291 TCAAGGCATCAATAGAAAACCCC 58.977 43.478 0.00 0.00 0.00 4.95
605 654 9.892130 TCAATTTTGTACCAAAGGTGTATTTTT 57.108 25.926 0.00 0.00 36.19 1.94
717 766 4.939052 TGCGGAACTCCCAAAAATTTTA 57.061 36.364 3.34 0.00 34.14 1.52
735 784 2.743752 CCGTGCTTCCAGACATGCG 61.744 63.158 0.00 0.00 0.00 4.73
1019 1068 4.095782 GCCATCGCACTGTAAAAATAGGAA 59.904 41.667 0.00 0.00 34.03 3.36
1371 1422 1.356398 TCGGCCATTTCCCCTACTTTT 59.644 47.619 2.24 0.00 0.00 2.27
1583 1642 0.037734 AAATTCCGCGGGTCCTTTCT 59.962 50.000 27.83 0.00 0.00 2.52
1633 1692 7.750229 TCTTGTTGCTTCATAAGAGTGAATT 57.250 32.000 0.00 0.00 37.47 2.17
1951 2022 3.426525 GCGCTCAAAATGACCTCTTTTTG 59.573 43.478 15.40 15.40 45.00 2.44
1970 2041 3.788163 GTCTAATCATTTCAGCAAAGCGC 59.212 43.478 0.00 0.00 42.91 5.92
1971 2042 4.095483 AGGTCTAATCATTTCAGCAAAGCG 59.905 41.667 0.00 0.00 0.00 4.68
1972 2043 5.573337 AGGTCTAATCATTTCAGCAAAGC 57.427 39.130 0.00 0.00 0.00 3.51
1973 2044 8.674263 AGATAGGTCTAATCATTTCAGCAAAG 57.326 34.615 0.00 0.00 31.36 2.77
1974 2045 9.466497 AAAGATAGGTCTAATCATTTCAGCAAA 57.534 29.630 0.00 0.00 33.30 3.68
1975 2046 9.466497 AAAAGATAGGTCTAATCATTTCAGCAA 57.534 29.630 0.00 0.00 33.30 3.91
1976 2047 9.466497 AAAAAGATAGGTCTAATCATTTCAGCA 57.534 29.630 0.00 0.00 33.30 4.41
1977 2048 9.727627 CAAAAAGATAGGTCTAATCATTTCAGC 57.272 33.333 0.00 0.00 33.30 4.26
1978 2049 9.727627 GCAAAAAGATAGGTCTAATCATTTCAG 57.272 33.333 0.00 0.00 33.30 3.02
1979 2050 8.397906 CGCAAAAAGATAGGTCTAATCATTTCA 58.602 33.333 0.00 0.00 33.30 2.69
1980 2051 8.398665 ACGCAAAAAGATAGGTCTAATCATTTC 58.601 33.333 0.00 0.00 33.30 2.17
1981 2052 8.281212 ACGCAAAAAGATAGGTCTAATCATTT 57.719 30.769 0.00 0.00 33.30 2.32
1982 2053 7.865706 ACGCAAAAAGATAGGTCTAATCATT 57.134 32.000 0.00 0.00 33.30 2.57
1983 2054 8.993121 CATACGCAAAAAGATAGGTCTAATCAT 58.007 33.333 0.00 0.00 33.30 2.45
1984 2055 7.042051 GCATACGCAAAAAGATAGGTCTAATCA 60.042 37.037 0.00 0.00 38.36 2.57
1985 2056 7.291567 GCATACGCAAAAAGATAGGTCTAATC 58.708 38.462 0.00 0.00 38.36 1.75
1986 2057 6.073765 CGCATACGCAAAAAGATAGGTCTAAT 60.074 38.462 0.00 0.00 38.40 1.73
1987 2058 5.233476 CGCATACGCAAAAAGATAGGTCTAA 59.767 40.000 0.00 0.00 38.40 2.10
1988 2059 4.743151 CGCATACGCAAAAAGATAGGTCTA 59.257 41.667 0.00 0.00 38.40 2.59
1989 2060 3.555956 CGCATACGCAAAAAGATAGGTCT 59.444 43.478 0.00 0.00 38.40 3.85
1990 2061 3.308866 ACGCATACGCAAAAAGATAGGTC 59.691 43.478 0.00 0.00 45.53 3.85
1991 2062 3.267483 ACGCATACGCAAAAAGATAGGT 58.733 40.909 0.00 0.00 45.53 3.08
1992 2063 3.944422 ACGCATACGCAAAAAGATAGG 57.056 42.857 0.00 0.00 45.53 2.57
1993 2064 6.959311 AGTTAAACGCATACGCAAAAAGATAG 59.041 34.615 0.00 0.00 45.53 2.08
1994 2065 6.739100 CAGTTAAACGCATACGCAAAAAGATA 59.261 34.615 0.00 0.00 45.53 1.98
1995 2066 5.567534 CAGTTAAACGCATACGCAAAAAGAT 59.432 36.000 0.00 0.00 45.53 2.40
1996 2067 4.907010 CAGTTAAACGCATACGCAAAAAGA 59.093 37.500 0.00 0.00 45.53 2.52
1997 2068 4.907010 TCAGTTAAACGCATACGCAAAAAG 59.093 37.500 0.00 0.00 45.53 2.27
1998 2069 4.845387 TCAGTTAAACGCATACGCAAAAA 58.155 34.783 0.00 0.00 45.53 1.94
1999 2070 4.469625 TCAGTTAAACGCATACGCAAAA 57.530 36.364 0.00 0.00 45.53 2.44
2000 2071 4.671880 ATCAGTTAAACGCATACGCAAA 57.328 36.364 0.00 0.00 45.53 3.68
2001 2072 5.733299 CATATCAGTTAAACGCATACGCAA 58.267 37.500 0.00 0.00 45.53 4.85
2002 2073 4.318475 GCATATCAGTTAAACGCATACGCA 60.318 41.667 0.00 0.00 45.53 5.24
2003 2074 4.084537 AGCATATCAGTTAAACGCATACGC 60.085 41.667 0.00 0.00 45.53 4.42
2004 2075 5.174943 TGAGCATATCAGTTAAACGCATACG 59.825 40.000 0.00 0.00 38.22 3.06
2005 2076 6.525121 TGAGCATATCAGTTAAACGCATAC 57.475 37.500 0.00 0.00 32.77 2.39
2018 2089 7.336176 GCATAAGGATTCATTCTGAGCATATCA 59.664 37.037 1.20 0.00 36.21 2.15
2019 2090 7.553402 AGCATAAGGATTCATTCTGAGCATATC 59.447 37.037 1.20 0.00 0.00 1.63
2020 2091 7.403671 AGCATAAGGATTCATTCTGAGCATAT 58.596 34.615 1.20 0.00 0.00 1.78
2021 2092 6.776744 AGCATAAGGATTCATTCTGAGCATA 58.223 36.000 1.20 0.00 0.00 3.14
2022 2093 5.632118 AGCATAAGGATTCATTCTGAGCAT 58.368 37.500 1.20 0.00 0.00 3.79
2023 2094 5.045012 AGCATAAGGATTCATTCTGAGCA 57.955 39.130 1.20 0.00 0.00 4.26
2024 2095 6.709846 ACTTAGCATAAGGATTCATTCTGAGC 59.290 38.462 1.20 0.00 0.00 4.26
2025 2096 9.941325 ATACTTAGCATAAGGATTCATTCTGAG 57.059 33.333 1.20 0.00 0.00 3.35
2066 2137 9.538508 GCTTCCGGTATCTTTCTTTTATTAGTA 57.461 33.333 0.00 0.00 0.00 1.82
2067 2138 8.265764 AGCTTCCGGTATCTTTCTTTTATTAGT 58.734 33.333 0.00 0.00 0.00 2.24
2068 2139 8.552034 CAGCTTCCGGTATCTTTCTTTTATTAG 58.448 37.037 0.00 0.00 0.00 1.73
2069 2140 8.262227 TCAGCTTCCGGTATCTTTCTTTTATTA 58.738 33.333 0.00 0.00 0.00 0.98
2070 2141 7.110155 TCAGCTTCCGGTATCTTTCTTTTATT 58.890 34.615 0.00 0.00 0.00 1.40
2071 2142 6.650120 TCAGCTTCCGGTATCTTTCTTTTAT 58.350 36.000 0.00 0.00 0.00 1.40
2072 2143 6.045072 TCAGCTTCCGGTATCTTTCTTTTA 57.955 37.500 0.00 0.00 0.00 1.52
2073 2144 4.906618 TCAGCTTCCGGTATCTTTCTTTT 58.093 39.130 0.00 0.00 0.00 2.27
2074 2145 4.553330 TCAGCTTCCGGTATCTTTCTTT 57.447 40.909 0.00 0.00 0.00 2.52
2075 2146 4.553330 TTCAGCTTCCGGTATCTTTCTT 57.447 40.909 0.00 0.00 0.00 2.52
2076 2147 4.553330 TTTCAGCTTCCGGTATCTTTCT 57.447 40.909 0.00 0.00 0.00 2.52
2077 2148 5.819825 AATTTCAGCTTCCGGTATCTTTC 57.180 39.130 0.00 0.00 0.00 2.62
2078 2149 5.125578 GGAAATTTCAGCTTCCGGTATCTTT 59.874 40.000 19.49 0.00 32.23 2.52
2079 2150 4.640647 GGAAATTTCAGCTTCCGGTATCTT 59.359 41.667 19.49 0.00 32.23 2.40
2080 2151 4.200092 GGAAATTTCAGCTTCCGGTATCT 58.800 43.478 19.49 0.00 32.23 1.98
2081 2152 3.945285 TGGAAATTTCAGCTTCCGGTATC 59.055 43.478 19.49 0.00 43.52 2.24
2082 2153 3.694566 GTGGAAATTTCAGCTTCCGGTAT 59.305 43.478 19.49 0.00 43.52 2.73
2083 2154 3.078837 GTGGAAATTTCAGCTTCCGGTA 58.921 45.455 19.49 0.00 43.52 4.02
2084 2155 1.886542 GTGGAAATTTCAGCTTCCGGT 59.113 47.619 19.49 0.00 43.52 5.28
2085 2156 1.202348 GGTGGAAATTTCAGCTTCCGG 59.798 52.381 19.49 0.00 43.52 5.14
2086 2157 1.885887 TGGTGGAAATTTCAGCTTCCG 59.114 47.619 19.49 0.00 43.52 4.30
2087 2158 3.259123 ACATGGTGGAAATTTCAGCTTCC 59.741 43.478 19.49 12.95 41.37 3.46
2088 2159 4.525912 ACATGGTGGAAATTTCAGCTTC 57.474 40.909 19.49 2.75 34.15 3.86
2089 2160 4.961438 AACATGGTGGAAATTTCAGCTT 57.039 36.364 19.49 10.30 34.15 3.74
2090 2161 4.634199 CAAACATGGTGGAAATTTCAGCT 58.366 39.130 19.49 4.10 34.15 4.24
2091 2162 3.187022 GCAAACATGGTGGAAATTTCAGC 59.813 43.478 19.49 14.45 0.00 4.26
2092 2163 4.634199 AGCAAACATGGTGGAAATTTCAG 58.366 39.130 19.49 4.85 0.00 3.02
2093 2164 4.686191 AGCAAACATGGTGGAAATTTCA 57.314 36.364 19.49 3.64 0.00 2.69
2094 2165 7.671495 AATTAGCAAACATGGTGGAAATTTC 57.329 32.000 9.83 9.83 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.