AutoCloner

Multiple sequence alignment - TraesCS2D01G268000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G268000	chr2D	100.000	9682	0	0	1	9682	327966815	327957134	0.000000e+00	17880.0
1	TraesCS2D01G268000	chr2D	83.895	801	84	24	8916	9682	296388485	296387696	0.000000e+00	723.0
2	TraesCS2D01G268000	chr2D	87.688	333	18	9	8916	9225	327939624	327939292	5.530000e-97	366.0
3	TraesCS2D01G268000	chr2D	94.000	50	3	0	1881	1930	327964845	327964796	1.040000e-09	76.8
4	TraesCS2D01G268000	chr2D	94.000	50	3	0	1971	2020	327964935	327964886	1.040000e-09	76.8
5	TraesCS2D01G268000	chr2B	95.729	3793	101	22	4597	8375	397248684	397244939	0.000000e+00	6050.0
6	TraesCS2D01G268000	chr2B	97.660	1111	15	4	3304	4414	397249774	397248675	0.000000e+00	1897.0
7	TraesCS2D01G268000	chr2B	95.402	1131	24	8	848	1973	397251633	397250526	0.000000e+00	1775.0
8	TraesCS2D01G268000	chr2B	97.622	757	18	0	2519	3275	397250527	397249771	0.000000e+00	1299.0
9	TraesCS2D01G268000	chr2B	83.503	788	93	20	8916	9679	365990952	365991726	0.000000e+00	701.0
10	TraesCS2D01G268000	chr2B	80.538	781	96	21	8916	9682	137796274	137795536	5.110000e-152	549.0
11	TraesCS2D01G268000	chr2B	96.063	254	10	0	8441	8694	397244940	397244687	1.950000e-111	414.0
12	TraesCS2D01G268000	chr2B	91.057	246	21	1	1	246	397268627	397268383	2.020000e-86	331.0
13	TraesCS2D01G268000	chr2B	97.382	191	5	0	4411	4601	314778884	314779074	9.380000e-85	326.0
14	TraesCS2D01G268000	chr2B	89.552	134	2	1	8782	8915	397244688	397244567	1.010000e-34	159.0
15	TraesCS2D01G268000	chr2B	92.593	108	6	2	758	864	397251889	397251783	4.680000e-33	154.0
16	TraesCS2D01G268000	chr2B	96.000	50	2	0	1971	2020	397250618	397250569	2.240000e-11	82.4
17	TraesCS2D01G268000	chr2A	96.824	2613	66	9	4597	7199	433626628	433624023	0.000000e+00	4349.0
18	TraesCS2D01G268000	chr2A	97.521	1896	42	4	2519	4414	433628509	433626619	0.000000e+00	3236.0
19	TraesCS2D01G268000	chr2A	94.676	1465	42	13	7237	8694	433624024	433622589	0.000000e+00	2241.0
20	TraesCS2D01G268000	chr2A	94.557	1286	41	12	690	1963	433629792	433628524	0.000000e+00	1960.0
21	TraesCS2D01G268000	chr2A	94.542	513	26	2	2012	2523	101855369	101854858	0.000000e+00	791.0
22	TraesCS2D01G268000	chr2A	94.358	514	27	2	2012	2524	421218769	421219281	0.000000e+00	787.0
23	TraesCS2D01G268000	chr2A	90.040	251	19	3	1	246	433630154	433629905	4.360000e-83	320.0
24	TraesCS2D01G268000	chr2A	92.377	223	13	4	4382	4601	569281634	569281855	2.030000e-81	315.0
25	TraesCS2D01G268000	chr2A	96.350	137	5	0	8782	8918	433622590	433622454	9.780000e-55	226.0
26	TraesCS2D01G268000	chr2A	93.878	98	4	2	612	707	433629915	433629818	7.840000e-31	147.0
27	TraesCS2D01G268000	chr3D	94.882	508	25	1	2012	2518	262995159	262995666	0.000000e+00	793.0
28	TraesCS2D01G268000	chr3D	95.652	92	3	1	8691	8781	525470233	525470142	7.840000e-31	147.0
29	TraesCS2D01G268000	chr3D	86.765	68	6	3	8853	8917	410671776	410671709	1.350000e-08	73.1
30	TraesCS2D01G268000	chr3A	94.882	508	25	1	2012	2518	77936429	77935922	0.000000e+00	793.0
31	TraesCS2D01G268000	chr3A	86.248	669	57	14	1215	1879	622459199	622459836	0.000000e+00	693.0
32	TraesCS2D01G268000	chr3A	90.133	375	26	5	1215	1587	691208880	691209245	2.450000e-130	477.0
33	TraesCS2D01G268000	chr3A	89.231	130	13	1	1751	1879	691209351	691209480	2.800000e-35	161.0
34	TraesCS2D01G268000	chr7A	94.695	509	26	1	2012	2519	319591483	319591991	0.000000e+00	789.0
35	TraesCS2D01G268000	chr7A	87.168	678	58	12	8916	9579	374548990	374548328	0.000000e+00	743.0
36	TraesCS2D01G268000	chr7A	87.411	564	40	11	8916	9448	492252277	492251714	3.840000e-173	619.0
37	TraesCS2D01G268000	chr7A	87.952	332	17	7	8916	9224	492247143	492246812	4.270000e-98	370.0
38	TraesCS2D01G268000	chr7A	88.983	118	9	2	9566	9682	492251640	492251526	1.010000e-29	143.0
39	TraesCS2D01G268000	chr7A	90.000	80	4	2	9566	9644	374548321	374548245	6.190000e-17	100.0
40	TraesCS2D01G268000	chr4D	94.695	509	26	1	2012	2519	351574469	351573961	0.000000e+00	789.0
41	TraesCS2D01G268000	chr4D	94.521	511	27	1	2012	2521	47532654	47533164	0.000000e+00	787.0
42	TraesCS2D01G268000	chr4D	82.244	811	61	28	8915	9682	105249512	105250282	2.970000e-174	623.0
43	TraesCS2D01G268000	chr4D	87.842	329	20	6	8916	9224	105254996	105255324	1.540000e-97	368.0
44	TraesCS2D01G268000	chr4D	85.311	177	26	0	9386	9562	271212014	271212190	5.970000e-42	183.0
45	TraesCS2D01G268000	chr4D	89.076	119	13	0	9385	9503	274462775	274462893	2.180000e-31	148.0
46	TraesCS2D01G268000	chr4D	95.604	91	3	1	8692	8781	12354795	12354705	2.820000e-30	145.0
47	TraesCS2D01G268000	chr4D	89.899	99	9	1	8684	8781	93339462	93339364	1.020000e-24	126.0
48	TraesCS2D01G268000	chr1D	94.695	509	26	1	2012	2519	223524062	223524570	0.000000e+00	789.0
49	TraesCS2D01G268000	chr1D	83.598	189	28	2	9385	9573	55620445	55620630	3.590000e-39	174.0
50	TraesCS2D01G268000	chr1D	97.778	90	1	1	8693	8781	220408740	220408829	4.680000e-33	154.0
51	TraesCS2D01G268000	chr1D	85.333	150	19	2	9385	9534	98829970	98829824	1.680000e-32	152.0
52	TraesCS2D01G268000	chr1D	93.407	91	5	1	8693	8782	272547650	272547560	6.100000e-27	134.0
53	TraesCS2D01G268000	chr1D	93.333	90	5	1	8693	8781	209519400	209519489	2.190000e-26	132.0
54	TraesCS2D01G268000	chr1D	82.667	150	23	2	9385	9534	98832234	98832088	7.890000e-26	130.0
55	TraesCS2D01G268000	chr1D	83.824	136	21	1	9385	9520	258348215	258348349	2.840000e-25	128.0
56	TraesCS2D01G268000	chr1D	95.122	82	3	1	8693	8773	453108477	453108558	2.840000e-25	128.0
57	TraesCS2D01G268000	chr1D	89.796	98	8	2	8685	8781	415425045	415424949	3.670000e-24	124.0
58	TraesCS2D01G268000	chr1D	84.874	119	18	0	9385	9503	199329187	199329305	4.750000e-23	121.0
59	TraesCS2D01G268000	chr1D	90.909	88	7	1	8693	8779	211693640	211693727	6.140000e-22	117.0
60	TraesCS2D01G268000	chr1D	90.110	91	8	1	8692	8781	490104161	490104071	6.140000e-22	117.0
61	TraesCS2D01G268000	chr4A	92.593	540	34	6	2012	2546	183141604	183141066	0.000000e+00	771.0
62	TraesCS2D01G268000	chr3B	83.436	809	94	20	8913	9682	338597113	338597920	0.000000e+00	715.0
63	TraesCS2D01G268000	chr3B	81.715	793	95	28	8916	9682	705033970	705034738	4.970000e-172	616.0
64	TraesCS2D01G268000	chr3B	94.634	205	6	5	4389	4593	695591812	695592011	7.300000e-81	313.0
65	TraesCS2D01G268000	chr3B	84.615	286	21	9	8916	9178	67396960	67396675	7.460000e-66	263.0
66	TraesCS2D01G268000	chr3B	95.604	91	3	1	8693	8782	337214583	337214673	2.820000e-30	145.0
67	TraesCS2D01G268000	chr3B	82.051	117	15	5	242	355	15999988	16000101	2.880000e-15	95.3
68	TraesCS2D01G268000	chr3B	91.935	62	5	0	1215	1276	30994999	30995060	4.820000e-13	87.9
69	TraesCS2D01G268000	chr3B	91.935	62	5	0	1215	1276	729710404	729710343	4.820000e-13	87.9
70	TraesCS2D01G268000	chr3B	91.935	62	5	0	1215	1276	773212106	773212167	4.820000e-13	87.9
71	TraesCS2D01G268000	chr6A	83.602	805	84	23	8916	9678	617255324	617256122	0.000000e+00	712.0
72	TraesCS2D01G268000	chr6A	76.757	555	97	23	8961	9503	430583535	430584069	2.060000e-71	281.0
73	TraesCS2D01G268000	chr6A	94.444	90	4	1	8693	8781	155803851	155803762	4.720000e-28	137.0
74	TraesCS2D01G268000	chr5A	80.541	776	106	34	8916	9676	348716578	348715833	1.100000e-153	555.0
75	TraesCS2D01G268000	chr5A	85.259	251	33	4	9324	9573	73953851	73954098	1.250000e-63	255.0
76	TraesCS2D01G268000	chr5A	89.759	166	14	3	8916	9078	525942656	525942491	9.850000e-50	209.0
77	TraesCS2D01G268000	chr4B	82.791	645	80	17	8916	9535	322644529	322643891	1.840000e-151	547.0
78	TraesCS2D01G268000	chr4B	81.803	610	89	11	8980	9570	201588631	201589237	8.740000e-135	492.0
79	TraesCS2D01G268000	chr4B	90.000	250	25	0	245	494	590136399	590136150	3.370000e-84	324.0
80	TraesCS2D01G268000	chr4B	83.030	330	35	8	8916	9224	201643330	201643659	7.400000e-71	279.0
81	TraesCS2D01G268000	chr4B	81.935	310	32	17	8938	9225	322639348	322639041	3.490000e-59	241.0
82	TraesCS2D01G268000	chr4B	79.819	332	42	17	8916	9225	322526061	322525733	1.640000e-52	219.0
83	TraesCS2D01G268000	chr4B	79.310	319	35	18	8916	9207	61321507	61321821	2.760000e-45	195.0
84	TraesCS2D01G268000	chr4B	92.143	140	8	3	486	622	590135012	590134873	2.760000e-45	195.0
85	TraesCS2D01G268000	chr4B	78.931	318	35	19	8916	9206	62047327	62047639	4.620000e-43	187.0
86	TraesCS2D01G268000	chr4B	84.118	170	25	2	9404	9572	322533889	322533721	7.780000e-36	163.0
87	TraesCS2D01G268000	chr4B	95.604	91	3	1	8693	8782	664908604	664908694	2.820000e-30	145.0
88	TraesCS2D01G268000	chr4B	93.617	94	5	1	8689	8781	260038596	260038689	1.310000e-28	139.0
89	TraesCS2D01G268000	chr4B	95.455	88	3	1	8691	8777	627255006	627254919	1.310000e-28	139.0
90	TraesCS2D01G268000	chr4B	87.356	87	10	1	241	327	388718006	388718091	2.230000e-16	99.0
91	TraesCS2D01G268000	chr4B	91.935	62	5	0	1215	1276	592358962	592359023	4.820000e-13	87.9
92	TraesCS2D01G268000	chr4B	91.935	62	4	1	1215	1276	106637352	106637292	1.730000e-12	86.1
93	TraesCS2D01G268000	chr5D	81.481	675	84	22	8913	9579	193513385	193514026	5.180000e-142	516.0
94	TraesCS2D01G268000	chr5D	82.752	545	67	17	9049	9570	213521794	213522334	2.460000e-125	460.0
95	TraesCS2D01G268000	chr5D	86.018	329	23	8	8916	9224	193518805	193519130	2.020000e-86	331.0
96	TraesCS2D01G268000	chr5D	95.652	92	3	1	8691	8781	565059363	565059454	7.840000e-31	147.0
97	TraesCS2D01G268000	chr5D	91.262	103	4	5	8679	8779	211215117	211215018	1.700000e-27	135.0
98	TraesCS2D01G268000	chr5D	89.583	48	4	1	9566	9612	213530893	213530940	1.050000e-04	60.2
99	TraesCS2D01G268000	chr7D	87.688	333	20	7	8975	9298	330820152	330820472	1.540000e-97	368.0
100	TraesCS2D01G268000	chr7D	88.365	318	21	6	8916	9224	330828929	330829239	1.540000e-97	368.0
101	TraesCS2D01G268000	chr7D	87.455	279	23	8	349	620	435509081	435508808	2.630000e-80	311.0
102	TraesCS2D01G268000	chr7D	100.000	28	0	0	242	269	517150325	517150298	1.800000e-02	52.8
103	TraesCS2D01G268000	chr6B	83.416	404	46	8	8916	9298	197694852	197694449	1.200000e-93	355.0
104	TraesCS2D01G268000	chr6B	82.231	242	23	13	9003	9224	197659191	197658950	3.570000e-44	191.0
105	TraesCS2D01G268000	chr6B	78.738	301	52	11	9385	9682	439355812	439355521	3.570000e-44	191.0
106	TraesCS2D01G268000	chr6B	88.710	62	5	2	1215	1276	272818074	272818015	3.750000e-09	75.0
107	TraesCS2D01G268000	chr1A	97.917	192	4	0	4407	4598	82525880	82526071	5.600000e-87	333.0
108	TraesCS2D01G268000	chr1A	82.011	189	31	2	9385	9573	256720539	256720354	3.620000e-34	158.0
109	TraesCS2D01G268000	chr1A	82.486	177	28	2	9385	9561	99900986	99901159	1.680000e-32	152.0
110	TraesCS2D01G268000	chr1A	84.768	151	16	5	9386	9534	292765803	292765948	2.820000e-30	145.0
111	TraesCS2D01G268000	chr1A	95.556	90	3	1	8693	8781	284145608	284145697	1.010000e-29	143.0
112	TraesCS2D01G268000	chr1A	90.323	62	6	0	1215	1276	26547818	26547757	2.240000e-11	82.4
113	TraesCS2D01G268000	chrUn	97.382	191	5	0	4411	4601	277314230	277314040	9.380000e-85	326.0
114	TraesCS2D01G268000	chrUn	77.108	415	60	24	8912	9298	243699040	243698633	3.540000e-49	207.0
115	TraesCS2D01G268000	chrUn	77.108	415	60	24	8912	9298	256323815	256324222	3.540000e-49	207.0
116	TraesCS2D01G268000	chrUn	77.519	387	52	23	8916	9274	287139178	287138799	5.930000e-47	200.0
117	TraesCS2D01G268000	chrUn	77.519	387	52	23	8916	9274	287145347	287144968	5.930000e-47	200.0
118	TraesCS2D01G268000	chrUn	77.519	387	52	23	8916	9274	466024150	466024529	5.930000e-47	200.0
119	TraesCS2D01G268000	chrUn	92.391	92	6	1	8691	8781	362465901	362465810	7.890000e-26	130.0
120	TraesCS2D01G268000	chrUn	92.308	91	6	1	8692	8781	21636771	21636681	2.840000e-25	128.0
121	TraesCS2D01G268000	chrUn	91.111	90	7	1	8693	8781	477580649	477580560	4.750000e-23	121.0
122	TraesCS2D01G268000	chrUn	93.243	74	3	2	8708	8781	50416586	50416657	3.700000e-19	108.0
123	TraesCS2D01G268000	chrUn	82.051	117	15	5	242	355	324785451	324785338	2.880000e-15	95.3
124	TraesCS2D01G268000	chrUn	82.051	117	15	5	242	355	325038642	325038529	2.880000e-15	95.3
125	TraesCS2D01G268000	chrUn	100.000	42	0	0	8740	8781	48471429	48471388	2.900000e-10	78.7
126	TraesCS2D01G268000	chrUn	100.000	42	0	0	8740	8781	48498207	48498166	2.900000e-10	78.7
127	TraesCS2D01G268000	chrUn	100.000	42	0	0	8740	8781	235113530	235113489	2.900000e-10	78.7
128	TraesCS2D01G268000	chrUn	100.000	42	0	0	8740	8781	237211132	237211173	2.900000e-10	78.7
129	TraesCS2D01G268000	chrUn	100.000	42	0	0	8740	8781	346824008	346824049	2.900000e-10	78.7
130	TraesCS2D01G268000	chrUn	86.364	66	6	1	8728	8790	41400600	41400535	1.740000e-07	69.4
131	TraesCS2D01G268000	chr7B	97.396	192	4	1	4407	4597	690699402	690699593	9.380000e-85	326.0
132	TraesCS2D01G268000	chr7B	96.907	194	5	1	4402	4595	699827890	699828082	3.370000e-84	324.0
133	TraesCS2D01G268000	chr7B	95.506	89	3	1	8693	8780	92810615	92810527	3.650000e-29	141.0
134	TraesCS2D01G268000	chr7B	94.565	92	4	1	8691	8781	508189383	508189474	3.650000e-29	141.0
135	TraesCS2D01G268000	chr1B	96.447	197	6	1	4401	4597	225811781	225811976	3.370000e-84	324.0
136	TraesCS2D01G268000	chr1B	96.447	197	5	2	4408	4602	476332672	476332868	3.370000e-84	324.0
137	TraesCS2D01G268000	chr1B	95.604	91	3	1	8693	8782	403400254	403400344	2.820000e-30	145.0
138	TraesCS2D01G268000	chr1B	95.556	90	3	1	8693	8781	325975525	325975614	1.010000e-29	143.0
139	TraesCS2D01G268000	chr1B	93.103	58	4	0	1215	1272	647647703	647647760	1.730000e-12	86.1
140	TraesCS2D01G268000	chr6D	95.556	90	3	1	8693	8781	292393182	292393271	1.010000e-29	143.0
141	TraesCS2D01G268000	chr6D	95.556	90	3	1	8693	8781	361526381	361526292	1.010000e-29	143.0
142	TraesCS2D01G268000	chr6D	92.553	94	5	2	8689	8781	200398711	200398803	6.100000e-27	134.0
143	TraesCS2D01G268000	chr6D	93.333	90	5	1	8693	8781	141924995	141924906	2.190000e-26	132.0
144	TraesCS2D01G268000	chr6D	93.333	90	5	1	8693	8781	291383353	291383442	2.190000e-26	132.0
145	TraesCS2D01G268000	chr6D	93.333	90	4	2	8693	8781	457543832	457543744	2.190000e-26	132.0
146	TraesCS2D01G268000	chr5B	91.935	62	5	0	1215	1276	711381300	711381361	4.820000e-13	87.9
147	TraesCS2D01G268000	chr5B	90.323	62	6	0	1215	1276	596644151	596644090	2.240000e-11	82.4
148	TraesCS2D01G268000	chr5B	90.323	62	5	1	8852	8912	319909190	319909251	8.060000e-11	80.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G268000	chr2D	327957134	327966815	9681	True	6011.200000	17880	96.000000	1	9682	3	chr2D.!!$R3	9681
1	TraesCS2D01G268000	chr2D	296387696	296388485	789	True	723.000000	723	83.895000	8916	9682	1	chr2D.!!$R1	766
2	TraesCS2D01G268000	chr2B	397244567	397251889	7322	True	1478.800000	6050	95.077625	758	8915	8	chr2B.!!$R3	8157
3	TraesCS2D01G268000	chr2B	365990952	365991726	774	False	701.000000	701	83.503000	8916	9679	1	chr2B.!!$F2	763
4	TraesCS2D01G268000	chr2B	137795536	137796274	738	True	549.000000	549	80.538000	8916	9682	1	chr2B.!!$R1	766
5	TraesCS2D01G268000	chr2A	433622454	433630154	7700	True	1782.714286	4349	94.835143	1	8918	7	chr2A.!!$R2	8917
6	TraesCS2D01G268000	chr2A	101854858	101855369	511	True	791.000000	791	94.542000	2012	2523	1	chr2A.!!$R1	511
7	TraesCS2D01G268000	chr2A	421218769	421219281	512	False	787.000000	787	94.358000	2012	2524	1	chr2A.!!$F1	512
8	TraesCS2D01G268000	chr3D	262995159	262995666	507	False	793.000000	793	94.882000	2012	2518	1	chr3D.!!$F1	506
9	TraesCS2D01G268000	chr3A	77935922	77936429	507	True	793.000000	793	94.882000	2012	2518	1	chr3A.!!$R1	506
10	TraesCS2D01G268000	chr3A	622459199	622459836	637	False	693.000000	693	86.248000	1215	1879	1	chr3A.!!$F1	664
11	TraesCS2D01G268000	chr3A	691208880	691209480	600	False	319.000000	477	89.682000	1215	1879	2	chr3A.!!$F2	664
12	TraesCS2D01G268000	chr7A	319591483	319591991	508	False	789.000000	789	94.695000	2012	2519	1	chr7A.!!$F1	507
13	TraesCS2D01G268000	chr7A	374548245	374548990	745	True	421.500000	743	88.584000	8916	9644	2	chr7A.!!$R2	728
14	TraesCS2D01G268000	chr7A	492251526	492252277	751	True	381.000000	619	88.197000	8916	9682	2	chr7A.!!$R3	766
15	TraesCS2D01G268000	chr4D	351573961	351574469	508	True	789.000000	789	94.695000	2012	2519	1	chr4D.!!$R3	507
16	TraesCS2D01G268000	chr4D	47532654	47533164	510	False	787.000000	787	94.521000	2012	2521	1	chr4D.!!$F1	509
17	TraesCS2D01G268000	chr4D	105249512	105250282	770	False	623.000000	623	82.244000	8915	9682	1	chr4D.!!$F2	767
18	TraesCS2D01G268000	chr1D	223524062	223524570	508	False	789.000000	789	94.695000	2012	2519	1	chr1D.!!$F6	507
19	TraesCS2D01G268000	chr4A	183141066	183141604	538	True	771.000000	771	92.593000	2012	2546	1	chr4A.!!$R1	534
20	TraesCS2D01G268000	chr3B	338597113	338597920	807	False	715.000000	715	83.436000	8913	9682	1	chr3B.!!$F4	769
21	TraesCS2D01G268000	chr3B	705033970	705034738	768	False	616.000000	616	81.715000	8916	9682	1	chr3B.!!$F6	766
22	TraesCS2D01G268000	chr6A	617255324	617256122	798	False	712.000000	712	83.602000	8916	9678	1	chr6A.!!$F2	762
23	TraesCS2D01G268000	chr6A	430583535	430584069	534	False	281.000000	281	76.757000	8961	9503	1	chr6A.!!$F1	542
24	TraesCS2D01G268000	chr5A	348715833	348716578	745	True	555.000000	555	80.541000	8916	9676	1	chr5A.!!$R1	760
25	TraesCS2D01G268000	chr4B	322643891	322644529	638	True	547.000000	547	82.791000	8916	9535	1	chr4B.!!$R5	619
26	TraesCS2D01G268000	chr4B	201588631	201589237	606	False	492.000000	492	81.803000	8980	9570	1	chr4B.!!$F3	590
27	TraesCS2D01G268000	chr4B	590134873	590136399	1526	True	259.500000	324	91.071500	245	622	2	chr4B.!!$R7	377
28	TraesCS2D01G268000	chr5D	193513385	193514026	641	False	516.000000	516	81.481000	8913	9579	1	chr5D.!!$F1	666
29	TraesCS2D01G268000	chr5D	213521794	213522334	540	False	460.000000	460	82.752000	9049	9570	1	chr5D.!!$F3	521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
510	516	0.108585	TTGTGTCAGAGCTTGGACCC	59.891	55.0	14.00	5.5	33.09	4.46	F
512	518	0.326264	GTGTCAGAGCTTGGACCCAT	59.674	55.0	14.00	0.0	33.09	4.00	F
2155	2409	0.526524	CACACGAGGAAGGATCGAGC	60.527	60.0	1.94	0.0	42.76	5.03	F
3278	3534	0.670854	GACTTCACCTTCAGTCGGCC	60.671	60.0	0.00	0.0	30.51	6.13	F
4421	4677	0.178861	TCTCTTTGGAAGGGGAGCCT	60.179	55.0	0.00	0.0	0.00	4.58	F
4471	4727	0.036164	CCATGAGGTCACGGGTTCAA	59.964	55.0	0.00	0.0	0.00	2.69	F
4480	4736	0.107831	CACGGGTTCAAGTCCTGGAA	59.892	55.0	0.00	0.0	35.79	3.53	F
4527	4783	0.177141	GGCTGCGTACAATAGACCCA	59.823	55.0	0.00	0.0	0.00	4.51	F
5685	6047	0.179108	GGTGTCATGCTCGGTAGACC	60.179	60.0	0.00	0.0	0.00	3.85	F
6836	7490	0.169672	CAAGAATGGTGCTTGAGCGG	59.830	55.0	0.00	0.0	44.16	5.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2098	2352	0.601046	CATACGCATCTCCGCCACAT	60.601	55.000	0.00	0.00	0.00	3.21	R
2389	2643	0.762418	CCACGCACCCCTATCCATAA	59.238	55.000	0.00	0.00	0.00	1.90	R
3426	3682	1.776662	ACATAGGAAGTCCGCTGCTA	58.223	50.000	0.00	0.00	42.08	3.49	R
4441	4697	0.037303	ACCTCATGGTCACAAGGCAG	59.963	55.000	0.00	0.00	44.78	4.85	R
5542	5902	1.896220	TTGGTGCTCATGTGAAGACC	58.104	50.000	0.00	2.05	0.00	3.85	R
6319	6969	2.675348	GGTTCTCCAGAAATGAGCTTCG	59.325	50.000	0.00	0.00	35.58	3.79	R
6503	7157	5.689031	GTGGTACATTCCATAACATGGCCTA	60.689	44.000	3.32	0.00	46.56	3.93	R
6742	7396	7.147391	TGGCCATTGAGTAGAATTAGGTATTGA	60.147	37.037	0.00	0.00	0.00	2.57	R
7197	7856	0.104197	GGAGGGAGGGGATGGATCTT	60.104	60.000	0.00	0.00	0.00	2.40	R
8686	9392	0.255318	GGACGGAGGGAGTACTCTGA	59.745	60.000	21.88	0.00	44.83	3.27	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	51	7.772332	ACACTCTTTATATTAGTTTGCGGAG	57.228	36.000	0.00	0.00	0.00	4.63
56	57	2.403252	ATTAGTTTGCGGAGGGAGTG	57.597	50.000	0.00	0.00	0.00	3.51
60	61	1.600636	TTTGCGGAGGGAGTGCTTG	60.601	57.895	0.00	0.00	0.00	4.01
67	68	1.813178	GGAGGGAGTGCTTGCTAAAAC	59.187	52.381	0.00	0.00	0.00	2.43
186	192	9.837525	GCATATGAAATGATATTTTCTCAGACC	57.162	33.333	6.97	0.00	36.71	3.85
235	241	3.058708	CACACATACACAAGCTGTTGGAG	60.059	47.826	0.00	0.00	38.07	3.86
236	242	3.181455	ACACATACACAAGCTGTTGGAGA	60.181	43.478	0.00	0.00	38.07	3.71
237	243	4.005650	CACATACACAAGCTGTTGGAGAT	58.994	43.478	0.00	0.00	38.07	2.75
238	244	4.005650	ACATACACAAGCTGTTGGAGATG	58.994	43.478	0.00	0.00	38.07	2.90
239	245	1.242076	ACACAAGCTGTTGGAGATGC	58.758	50.000	0.00	0.00	38.07	3.91
240	246	1.202855	ACACAAGCTGTTGGAGATGCT	60.203	47.619	0.00	0.00	38.07	3.79
241	247	1.467734	CACAAGCTGTTGGAGATGCTC	59.532	52.381	0.00	0.00	38.07	4.26
242	248	1.350351	ACAAGCTGTTGGAGATGCTCT	59.650	47.619	0.00	0.00	38.07	4.09
243	249	2.224719	ACAAGCTGTTGGAGATGCTCTT	60.225	45.455	0.00	0.00	38.07	2.85
263	269	1.696063	AGGGCATCCACAATGTATGC	58.304	50.000	11.55	11.55	44.16	3.14
278	284	3.355378	TGTATGCCAAATTGCTAGTGCT	58.645	40.909	0.00	0.00	40.48	4.40
302	308	7.380602	GCTAAATGATCAAATAGCTTTTCGCAT	59.619	33.333	24.86	0.00	42.61	4.73
305	311	4.570369	TGATCAAATAGCTTTTCGCATCGA	59.430	37.500	0.00	0.00	42.61	3.59
306	312	5.237127	TGATCAAATAGCTTTTCGCATCGAT	59.763	36.000	0.00	0.00	42.61	3.59
307	313	6.423604	TGATCAAATAGCTTTTCGCATCGATA	59.576	34.615	0.00	0.00	42.61	2.92
320	326	3.551485	CGCATCGATAAGACACATTGTGA	59.449	43.478	23.12	0.93	36.96	3.58
322	328	5.496387	GCATCGATAAGACACATTGTGAAG	58.504	41.667	23.12	6.25	36.96	3.02
331	337	0.185901	ACATTGTGAAGGGTGGTGCT	59.814	50.000	0.00	0.00	0.00	4.40
334	340	2.270352	TTGTGAAGGGTGGTGCTAAG	57.730	50.000	0.00	0.00	0.00	2.18
347	353	5.938125	GGTGGTGCTAAGTCAAAGAAATAGA	59.062	40.000	0.00	0.00	0.00	1.98
388	394	3.243636	GCTCCGATGCCAAATTCATTGAT	60.244	43.478	0.00	0.00	41.85	2.57
392	398	5.359292	TCCGATGCCAAATTCATTGATACAA	59.641	36.000	0.00	0.00	41.85	2.41
421	427	7.979786	AAATGTTATCTCTCTCCTACCTTCA	57.020	36.000	0.00	0.00	0.00	3.02
436	442	2.835156	ACCTTCAGCTACTTTCTCCCTC	59.165	50.000	0.00	0.00	0.00	4.30
438	444	1.475403	TCAGCTACTTTCTCCCTCCG	58.525	55.000	0.00	0.00	0.00	4.63
443	449	1.614241	TACTTTCTCCCTCCGCCTGC	61.614	60.000	0.00	0.00	0.00	4.85
465	471	1.281960	GGCATGCATGAGCTTAGCG	59.718	57.895	30.64	0.20	42.74	4.26
466	472	1.370172	GCATGCATGAGCTTAGCGC	60.370	57.895	30.64	7.52	42.74	5.92
467	473	2.019337	CATGCATGAGCTTAGCGCA	58.981	52.632	22.59	13.68	43.16	6.09
469	475	1.802365	CATGCATGAGCTTAGCGCATA	59.198	47.619	22.59	9.30	46.36	3.14
470	476	1.505425	TGCATGAGCTTAGCGCATAG	58.495	50.000	21.86	16.58	46.36	2.23
471	477	1.069049	TGCATGAGCTTAGCGCATAGA	59.931	47.619	21.86	9.61	46.36	1.98
472	478	2.289257	TGCATGAGCTTAGCGCATAGAT	60.289	45.455	21.86	4.35	46.36	1.98
473	479	3.056607	TGCATGAGCTTAGCGCATAGATA	60.057	43.478	21.86	7.20	46.36	1.98
474	480	3.928992	GCATGAGCTTAGCGCATAGATAA	59.071	43.478	21.86	0.00	46.36	1.75
475	481	4.032672	GCATGAGCTTAGCGCATAGATAAG	59.967	45.833	21.86	10.56	46.36	1.73
478	484	6.030548	TGAGCTTAGCGCATAGATAAGATT	57.969	37.500	11.47	0.54	45.95	2.40
479	485	6.459066	TGAGCTTAGCGCATAGATAAGATTT	58.541	36.000	11.47	0.00	45.95	2.17
480	486	6.931281	TGAGCTTAGCGCATAGATAAGATTTT	59.069	34.615	11.47	0.00	45.95	1.82
481	487	7.116948	TGAGCTTAGCGCATAGATAAGATTTTC	59.883	37.037	11.47	5.64	45.95	2.29
482	488	7.158021	AGCTTAGCGCATAGATAAGATTTTCT	58.842	34.615	11.47	0.00	43.90	2.52
483	489	8.307483	AGCTTAGCGCATAGATAAGATTTTCTA	58.693	33.333	11.47	0.00	43.90	2.10
502	508	9.846248	ATTTTCTATGTTAATTTGTGTCAGAGC	57.154	29.630	0.00	0.00	0.00	4.09
503	509	8.621532	TTTCTATGTTAATTTGTGTCAGAGCT	57.378	30.769	0.00	0.00	0.00	4.09
504	510	8.621532	TTCTATGTTAATTTGTGTCAGAGCTT	57.378	30.769	0.00	0.00	0.00	3.74
505	511	8.032952	TCTATGTTAATTTGTGTCAGAGCTTG	57.967	34.615	0.00	0.00	0.00	4.01
506	512	5.437289	TGTTAATTTGTGTCAGAGCTTGG	57.563	39.130	0.00	0.00	0.00	3.61
507	513	5.129634	TGTTAATTTGTGTCAGAGCTTGGA	58.870	37.500	0.00	0.00	0.00	3.53
508	514	5.008613	TGTTAATTTGTGTCAGAGCTTGGAC	59.991	40.000	10.76	10.76	34.63	4.02
509	515	1.967319	TTTGTGTCAGAGCTTGGACC	58.033	50.000	14.00	7.77	33.09	4.46
510	516	0.108585	TTGTGTCAGAGCTTGGACCC	59.891	55.000	14.00	5.50	33.09	4.46
511	517	1.053835	TGTGTCAGAGCTTGGACCCA	61.054	55.000	14.00	7.73	33.09	4.51
512	518	0.326264	GTGTCAGAGCTTGGACCCAT	59.674	55.000	14.00	0.00	33.09	4.00
513	519	1.067295	TGTCAGAGCTTGGACCCATT	58.933	50.000	14.00	0.00	33.09	3.16
514	520	1.425066	TGTCAGAGCTTGGACCCATTT	59.575	47.619	14.00	0.00	33.09	2.32
515	521	2.158475	TGTCAGAGCTTGGACCCATTTT	60.158	45.455	14.00	0.00	33.09	1.82
516	522	2.229784	GTCAGAGCTTGGACCCATTTTG	59.770	50.000	7.31	0.00	0.00	2.44
517	523	2.158475	TCAGAGCTTGGACCCATTTTGT	60.158	45.455	0.00	0.00	0.00	2.83
518	524	3.073798	TCAGAGCTTGGACCCATTTTGTA	59.926	43.478	0.00	0.00	0.00	2.41
519	525	3.441572	CAGAGCTTGGACCCATTTTGTAG	59.558	47.826	0.00	0.00	0.00	2.74
520	526	3.330701	AGAGCTTGGACCCATTTTGTAGA	59.669	43.478	0.00	0.00	0.00	2.59
521	527	4.018050	AGAGCTTGGACCCATTTTGTAGAT	60.018	41.667	0.00	0.00	0.00	1.98
522	528	5.191722	AGAGCTTGGACCCATTTTGTAGATA	59.808	40.000	0.00	0.00	0.00	1.98
523	529	6.018433	AGCTTGGACCCATTTTGTAGATAT	57.982	37.500	0.00	0.00	0.00	1.63
524	530	6.435164	AGCTTGGACCCATTTTGTAGATATT	58.565	36.000	0.00	0.00	0.00	1.28
525	531	6.897413	AGCTTGGACCCATTTTGTAGATATTT	59.103	34.615	0.00	0.00	0.00	1.40
526	532	6.980397	GCTTGGACCCATTTTGTAGATATTTG	59.020	38.462	0.00	0.00	0.00	2.32
527	533	7.416964	TTGGACCCATTTTGTAGATATTTGG	57.583	36.000	0.00	0.00	0.00	3.28
528	534	5.362430	TGGACCCATTTTGTAGATATTTGGC	59.638	40.000	0.00	0.00	0.00	4.52
529	535	5.362430	GGACCCATTTTGTAGATATTTGGCA	59.638	40.000	0.00	0.00	0.00	4.92
530	536	6.127196	GGACCCATTTTGTAGATATTTGGCAA	60.127	38.462	0.00	0.00	0.00	4.52
531	537	7.418942	GGACCCATTTTGTAGATATTTGGCAAT	60.419	37.037	0.00	0.00	0.00	3.56
532	538	8.546083	ACCCATTTTGTAGATATTTGGCAATA	57.454	30.769	0.00	0.00	0.00	1.90
533	539	8.421002	ACCCATTTTGTAGATATTTGGCAATAC	58.579	33.333	0.00	0.52	0.00	1.89
534	540	8.641541	CCCATTTTGTAGATATTTGGCAATACT	58.358	33.333	0.00	1.23	0.00	2.12
544	550	9.851686	AGATATTTGGCAATACTACATTGAAGA	57.148	29.630	0.00	0.00	0.00	2.87
546	552	9.851686	ATATTTGGCAATACTACATTGAAGAGA	57.148	29.630	0.00	0.00	0.00	3.10
547	553	7.994425	TTTGGCAATACTACATTGAAGAGAA	57.006	32.000	0.00	0.00	0.00	2.87
548	554	8.579850	TTTGGCAATACTACATTGAAGAGAAT	57.420	30.769	0.00	0.00	0.00	2.40
549	555	7.558161	TGGCAATACTACATTGAAGAGAATG	57.442	36.000	1.26	0.00	38.97	2.67
550	556	7.337938	TGGCAATACTACATTGAAGAGAATGA	58.662	34.615	0.00	0.00	36.89	2.57
551	557	7.828717	TGGCAATACTACATTGAAGAGAATGAA	59.171	33.333	0.00	0.00	36.89	2.57
552	558	8.844244	GGCAATACTACATTGAAGAGAATGAAT	58.156	33.333	0.00	0.00	36.89	2.57
553	559	9.661187	GCAATACTACATTGAAGAGAATGAATG	57.339	33.333	0.00	0.00	36.89	2.67
561	567	9.635520	ACATTGAAGAGAATGAATGAATTTGAC	57.364	29.630	0.00	0.00	36.89	3.18
562	568	9.634163	CATTGAAGAGAATGAATGAATTTGACA	57.366	29.630	0.00	0.00	35.65	3.58
563	569	9.635520	ATTGAAGAGAATGAATGAATTTGACAC	57.364	29.630	0.00	0.00	0.00	3.67
564	570	7.596494	TGAAGAGAATGAATGAATTTGACACC	58.404	34.615	0.00	0.00	0.00	4.16
565	571	7.231115	TGAAGAGAATGAATGAATTTGACACCA	59.769	33.333	0.00	0.00	0.00	4.17
566	572	7.154435	AGAGAATGAATGAATTTGACACCAG	57.846	36.000	0.00	0.00	0.00	4.00
567	573	6.718454	AGAGAATGAATGAATTTGACACCAGT	59.282	34.615	0.00	0.00	0.00	4.00
568	574	6.684686	AGAATGAATGAATTTGACACCAGTG	58.315	36.000	0.00	0.00	0.00	3.66
569	575	4.241590	TGAATGAATTTGACACCAGTGC	57.758	40.909	0.00	0.00	0.00	4.40
570	576	3.005684	TGAATGAATTTGACACCAGTGCC	59.994	43.478	0.00	0.00	0.00	5.01
571	577	2.064434	TGAATTTGACACCAGTGCCA	57.936	45.000	0.00	0.00	0.00	4.92
572	578	2.382882	TGAATTTGACACCAGTGCCAA	58.617	42.857	0.00	0.00	31.18	4.52
573	579	2.762887	TGAATTTGACACCAGTGCCAAA	59.237	40.909	13.47	13.47	44.62	3.28
574	580	3.196469	TGAATTTGACACCAGTGCCAAAA	59.804	39.130	14.78	6.09	43.94	2.44
575	581	4.141756	TGAATTTGACACCAGTGCCAAAAT	60.142	37.500	14.78	7.90	43.94	1.82
576	582	3.902881	TTTGACACCAGTGCCAAAATT	57.097	38.095	9.43	0.00	39.39	1.82
577	583	3.451141	TTGACACCAGTGCCAAAATTC	57.549	42.857	0.00	0.00	30.13	2.17
578	584	2.665165	TGACACCAGTGCCAAAATTCT	58.335	42.857	0.00	0.00	0.00	2.40
579	585	2.361757	TGACACCAGTGCCAAAATTCTG	59.638	45.455	0.00	0.00	0.00	3.02
580	586	2.622942	GACACCAGTGCCAAAATTCTGA	59.377	45.455	0.00	0.00	0.00	3.27
581	587	2.624838	ACACCAGTGCCAAAATTCTGAG	59.375	45.455	0.00	0.00	0.00	3.35
582	588	2.886523	CACCAGTGCCAAAATTCTGAGA	59.113	45.455	0.00	0.00	0.00	3.27
583	589	2.887152	ACCAGTGCCAAAATTCTGAGAC	59.113	45.455	0.00	0.00	0.00	3.36
584	590	2.886523	CCAGTGCCAAAATTCTGAGACA	59.113	45.455	0.00	0.00	0.00	3.41
585	591	3.508793	CCAGTGCCAAAATTCTGAGACAT	59.491	43.478	0.00	0.00	0.00	3.06
586	592	4.380233	CCAGTGCCAAAATTCTGAGACATC	60.380	45.833	0.00	0.00	0.00	3.06
587	593	4.216902	CAGTGCCAAAATTCTGAGACATCA	59.783	41.667	0.00	0.00	0.00	3.07
588	594	4.217118	AGTGCCAAAATTCTGAGACATCAC	59.783	41.667	0.00	0.00	0.00	3.06
589	595	4.022935	GTGCCAAAATTCTGAGACATCACA	60.023	41.667	0.00	0.00	0.00	3.58
590	596	4.583907	TGCCAAAATTCTGAGACATCACAA	59.416	37.500	0.00	0.00	0.00	3.33
591	597	5.068855	TGCCAAAATTCTGAGACATCACAAA	59.931	36.000	0.00	0.00	0.00	2.83
592	598	6.161381	GCCAAAATTCTGAGACATCACAAAT	58.839	36.000	0.00	0.00	0.00	2.32
593	599	6.647895	GCCAAAATTCTGAGACATCACAAATT	59.352	34.615	0.00	0.00	31.60	1.82
594	600	7.172019	GCCAAAATTCTGAGACATCACAAATTT	59.828	33.333	0.00	0.00	37.33	1.82
595	601	8.492748	CCAAAATTCTGAGACATCACAAATTTG	58.507	33.333	16.67	16.67	36.62	2.32
596	602	9.251792	CAAAATTCTGAGACATCACAAATTTGA	57.748	29.630	24.64	3.52	36.62	2.69
597	603	8.807667	AAATTCTGAGACATCACAAATTTGAC	57.192	30.769	24.64	8.24	35.92	3.18
598	604	6.940831	TTCTGAGACATCACAAATTTGACA	57.059	33.333	24.64	10.37	0.00	3.58
599	605	6.304356	TCTGAGACATCACAAATTTGACAC	57.696	37.500	24.64	9.16	0.00	3.67
600	606	5.239306	TCTGAGACATCACAAATTTGACACC	59.761	40.000	24.64	8.22	0.00	4.16
601	607	4.886489	TGAGACATCACAAATTTGACACCA	59.114	37.500	24.64	8.10	0.00	4.17
602	608	5.535783	TGAGACATCACAAATTTGACACCAT	59.464	36.000	24.64	5.38	0.00	3.55
603	609	6.017400	AGACATCACAAATTTGACACCATC	57.983	37.500	24.64	13.30	0.00	3.51
604	610	5.535783	AGACATCACAAATTTGACACCATCA	59.464	36.000	24.64	0.00	34.65	3.07
605	611	5.531634	ACATCACAAATTTGACACCATCAC	58.468	37.500	24.64	0.00	36.92	3.06
606	612	4.221926	TCACAAATTTGACACCATCACG	57.778	40.909	24.64	0.00	36.92	4.35
607	613	3.629855	TCACAAATTTGACACCATCACGT	59.370	39.130	24.64	0.00	36.92	4.49
608	614	4.097135	TCACAAATTTGACACCATCACGTT	59.903	37.500	24.64	0.00	36.92	3.99
609	615	4.206814	CACAAATTTGACACCATCACGTTG	59.793	41.667	24.64	3.89	36.92	4.10
610	616	4.142271	ACAAATTTGACACCATCACGTTGT	60.142	37.500	24.64	0.00	36.92	3.32
627	633	1.357137	TGTGATGCCCTTAGTCACCA	58.643	50.000	0.00	0.00	41.09	4.17
668	674	2.400399	CATTTTGGCAGCACAGTTGAG	58.600	47.619	0.00	0.00	0.00	3.02
680	686	5.063944	CAGCACAGTTGAGGATGTAACATAC	59.936	44.000	0.00	0.00	0.00	2.39
747	800	9.476202	AAAACAGTAAATAAGCTTCAATTCCAC	57.524	29.630	0.00	0.79	0.00	4.02
750	803	9.515226	ACAGTAAATAAGCTTCAATTCCACTAA	57.485	29.630	0.00	0.00	0.00	2.24
801	854	3.139077	CAGTTTTTCGTAGCTTCACCCT	58.861	45.455	0.00	0.00	0.00	4.34
937	1156	4.626081	GCCGCACCACTCACCAGT	62.626	66.667	0.00	0.00	0.00	4.00
938	1157	2.357517	CCGCACCACTCACCAGTC	60.358	66.667	0.00	0.00	0.00	3.51
955	1174	2.126071	CACCAGTACCCGAGCGTG	60.126	66.667	0.00	0.00	0.00	5.34
1002	1221	3.917760	GGAGCGGGGACTCGGATG	61.918	72.222	0.00	0.00	37.57	3.51
1013	1232	2.513666	TCGGATGGCCATTGCGAC	60.514	61.111	21.84	6.22	38.85	5.19
1066	1285	4.047125	TAGTGCCTGCCAAGCCCC	62.047	66.667	0.00	0.00	0.00	5.80
1206	1425	2.298729	AGCGGAATCAGATCTCTAAGGC	59.701	50.000	0.00	0.00	0.00	4.35
1262	1484	4.452455	CGGAGCTGACTGATACTTGTTTTT	59.548	41.667	0.00	0.00	0.00	1.94
1318	1542	3.431346	CGATGATGGACTGGACAGACAAT	60.431	47.826	6.29	0.00	0.00	2.71
1498	1722	3.600388	ACTGATTTCATCGAACCTGACC	58.400	45.455	0.00	0.00	0.00	4.02
1777	2029	2.420022	GCTGCATATTTCGTTCACTGGT	59.580	45.455	0.00	0.00	0.00	4.00
1842	2094	2.156098	GGATGAGGTAACACGCCAAAA	58.844	47.619	0.00	0.00	41.41	2.44
1861	2114	6.288294	CCAAAATCCACGACCATAGAATAGA	58.712	40.000	0.00	0.00	0.00	1.98
1920	2173	9.613428	TTTTCTTGACCACATATCACCTAATAG	57.387	33.333	0.00	0.00	0.00	1.73
1983	2236	7.985476	AGAATTATTTTCTTACATCACCACCG	58.015	34.615	0.00	0.00	0.00	4.94
1984	2237	7.610305	AGAATTATTTTCTTACATCACCACCGT	59.390	33.333	0.00	0.00	0.00	4.83
1985	2238	7.696992	ATTATTTTCTTACATCACCACCGTT	57.303	32.000	0.00	0.00	0.00	4.44
1986	2239	7.513371	TTATTTTCTTACATCACCACCGTTT	57.487	32.000	0.00	0.00	0.00	3.60
1987	2240	5.838531	TTTTCTTACATCACCACCGTTTT	57.161	34.783	0.00	0.00	0.00	2.43
1988	2241	5.427036	TTTCTTACATCACCACCGTTTTC	57.573	39.130	0.00	0.00	0.00	2.29
1989	2242	4.345859	TCTTACATCACCACCGTTTTCT	57.654	40.909	0.00	0.00	0.00	2.52
1990	2243	4.710324	TCTTACATCACCACCGTTTTCTT	58.290	39.130	0.00	0.00	0.00	2.52
1991	2244	4.513692	TCTTACATCACCACCGTTTTCTTG	59.486	41.667	0.00	0.00	0.00	3.02
1992	2245	2.925724	ACATCACCACCGTTTTCTTGA	58.074	42.857	0.00	0.00	0.00	3.02
1993	2246	2.616842	ACATCACCACCGTTTTCTTGAC	59.383	45.455	0.00	0.00	0.00	3.18
1994	2247	1.670791	TCACCACCGTTTTCTTGACC	58.329	50.000	0.00	0.00	0.00	4.02
1995	2248	1.065345	TCACCACCGTTTTCTTGACCA	60.065	47.619	0.00	0.00	0.00	4.02
1996	2249	1.064952	CACCACCGTTTTCTTGACCAC	59.935	52.381	0.00	0.00	0.00	4.16
1997	2250	1.340211	ACCACCGTTTTCTTGACCACA	60.340	47.619	0.00	0.00	0.00	4.17
1998	2251	1.953686	CCACCGTTTTCTTGACCACAT	59.046	47.619	0.00	0.00	0.00	3.21
1999	2252	3.142951	CCACCGTTTTCTTGACCACATA	58.857	45.455	0.00	0.00	0.00	2.29
2000	2253	3.756434	CCACCGTTTTCTTGACCACATAT	59.244	43.478	0.00	0.00	0.00	1.78
2001	2254	4.142687	CCACCGTTTTCTTGACCACATATC	60.143	45.833	0.00	0.00	0.00	1.63
2002	2255	4.454161	CACCGTTTTCTTGACCACATATCA	59.546	41.667	0.00	0.00	0.00	2.15
2003	2256	4.454504	ACCGTTTTCTTGACCACATATCAC	59.545	41.667	0.00	0.00	0.00	3.06
2004	2257	4.142687	CCGTTTTCTTGACCACATATCACC	60.143	45.833	0.00	0.00	0.00	4.02
2005	2258	4.142687	CGTTTTCTTGACCACATATCACCC	60.143	45.833	0.00	0.00	0.00	4.61
2006	2259	4.649267	TTTCTTGACCACATATCACCCA	57.351	40.909	0.00	0.00	0.00	4.51
2007	2260	4.649267	TTCTTGACCACATATCACCCAA	57.351	40.909	0.00	0.00	0.00	4.12
2008	2261	4.860802	TCTTGACCACATATCACCCAAT	57.139	40.909	0.00	0.00	0.00	3.16
2009	2262	5.966853	TCTTGACCACATATCACCCAATA	57.033	39.130	0.00	0.00	0.00	1.90
2010	2263	6.514012	TCTTGACCACATATCACCCAATAT	57.486	37.500	0.00	0.00	0.00	1.28
2077	2331	3.315191	GCTGAGTGTTGGCTGACTAAAAA	59.685	43.478	0.00	0.00	0.00	1.94
2095	2349	3.609103	AAAGCGACATGTTCAACAGTC	57.391	42.857	0.00	3.46	0.00	3.51
2098	2352	2.135139	GCGACATGTTCAACAGTCAGA	58.865	47.619	15.85	0.00	30.79	3.27
2155	2409	0.526524	CACACGAGGAAGGATCGAGC	60.527	60.000	1.94	0.00	42.76	5.03
2181	2435	7.013369	CCCGGAATGATGATATACGAGATAGAA	59.987	40.741	0.73	0.00	0.00	2.10
2213	2467	4.500375	GCACCAATTGAAGAGAAGCTTGTT	60.500	41.667	2.10	0.00	36.83	2.83
2228	2482	2.158449	GCTTGTTCAACATCGTCTGAGG	59.842	50.000	0.00	0.00	0.00	3.86
2312	2566	1.205893	GCGGAGAATGTCAAGAGAGGT	59.794	52.381	0.00	0.00	0.00	3.85
2336	2590	3.370103	GGGGTAGACCGAATTTGACATGA	60.370	47.826	0.00	0.00	41.60	3.07
2345	2599	4.498241	CGAATTTGACATGAGAGGAGTCA	58.502	43.478	0.00	0.00	40.24	3.41
2348	2602	6.611613	AATTTGACATGAGAGGAGTCAGTA	57.388	37.500	0.00	0.00	42.54	2.74
2357	2611	6.073447	TGAGAGGAGTCAGTAAAGAGAGAT	57.927	41.667	0.00	0.00	0.00	2.75
2389	2643	6.681729	TTGGAGTATCACCAAAGAACTAGT	57.318	37.500	0.00	0.00	43.22	2.57
2458	2712	3.881089	TGAGTTGGTCGCGAGATCTTATA	59.119	43.478	10.24	0.00	43.23	0.98
2459	2713	4.519350	TGAGTTGGTCGCGAGATCTTATAT	59.481	41.667	10.24	0.00	43.23	0.86
2469	2723	5.692204	CGCGAGATCTTATATGTTTCACCTT	59.308	40.000	0.00	0.00	0.00	3.50
2616	2872	3.323403	AGCAACAACTTCTGTAGAGAGCT	59.677	43.478	0.00	0.00	37.23	4.09
2681	2937	5.592282	CGGACTGGTCATATGCTCTAGATAT	59.408	44.000	14.32	0.00	0.00	1.63
2761	3017	7.290110	TGAAGAGATCACAAGAGAAACACTA	57.710	36.000	0.00	0.00	31.50	2.74
2847	3103	4.155099	TGGTGTGCTTTATGTGGTAAATCG	59.845	41.667	0.00	0.00	32.12	3.34
2849	3105	4.393680	GTGTGCTTTATGTGGTAAATCGGA	59.606	41.667	0.00	0.00	32.12	4.55
2992	3248	9.372369	GATTATGTGTAATATAGTTCCTCTGCC	57.628	37.037	0.00	0.00	30.75	4.85
3046	3302	9.757227	ATTGTTATGAGCTATCTGAAGTACTTC	57.243	33.333	25.73	25.73	39.91	3.01
3278	3534	0.670854	GACTTCACCTTCAGTCGGCC	60.671	60.000	0.00	0.00	30.51	6.13
3432	3688	8.964420	TTGTTTTTACATGATAAAGTAGCAGC	57.036	30.769	0.00	0.00	0.00	5.25
4108	4364	2.604139	TGTGATGTCCCTGTCAGTGTA	58.396	47.619	0.00	0.00	0.00	2.90
4178	4434	7.408132	TGTGAGTTTTCTTCAAAGTATCTCG	57.592	36.000	0.00	0.00	0.00	4.04
4198	4454	7.290857	TCTCGATTTTCCATTAAAGTCTTCG	57.709	36.000	0.00	0.00	32.98	3.79
4419	4675	2.757314	CAATTCTCTTTGGAAGGGGAGC	59.243	50.000	0.00	0.00	0.00	4.70
4420	4676	0.698818	TTCTCTTTGGAAGGGGAGCC	59.301	55.000	0.00	0.00	0.00	4.70
4421	4677	0.178861	TCTCTTTGGAAGGGGAGCCT	60.179	55.000	0.00	0.00	0.00	4.58
4422	4678	0.701147	CTCTTTGGAAGGGGAGCCTT	59.299	55.000	0.00	0.00	0.00	4.35
4423	4679	0.405585	TCTTTGGAAGGGGAGCCTTG	59.594	55.000	0.00	0.00	0.00	3.61
4424	4680	0.613012	CTTTGGAAGGGGAGCCTTGG	60.613	60.000	0.00	0.00	0.00	3.61
4425	4681	2.730129	TTTGGAAGGGGAGCCTTGGC	62.730	60.000	2.97	2.97	0.00	4.52
4426	4682	4.803908	GGAAGGGGAGCCTTGGCG	62.804	72.222	5.95	0.00	0.00	5.69
4434	4690	3.605749	GAGCCTTGGCGCAGTGGTA	62.606	63.158	10.83	0.00	0.00	3.25
4435	4691	2.671619	GCCTTGGCGCAGTGGTAA	60.672	61.111	10.83	0.00	0.00	2.85
4436	4692	2.265182	GCCTTGGCGCAGTGGTAAA	61.265	57.895	10.83	0.00	0.00	2.01
4437	4693	1.875963	CCTTGGCGCAGTGGTAAAG	59.124	57.895	10.83	0.71	0.00	1.85
4438	4694	1.210155	CTTGGCGCAGTGGTAAAGC	59.790	57.895	10.83	0.00	0.00	3.51
4439	4695	1.228124	TTGGCGCAGTGGTAAAGCT	60.228	52.632	10.83	0.00	0.00	3.74
4440	4696	1.514678	TTGGCGCAGTGGTAAAGCTG	61.515	55.000	10.83	0.00	35.93	4.24
4445	4701	1.878775	CAGTGGTAAAGCTGCTGCC	59.121	57.895	12.44	7.07	40.80	4.85
4446	4702	0.607489	CAGTGGTAAAGCTGCTGCCT	60.607	55.000	12.44	2.45	40.80	4.75
4447	4703	0.111253	AGTGGTAAAGCTGCTGCCTT	59.889	50.000	12.44	8.34	40.80	4.35
4448	4704	0.242017	GTGGTAAAGCTGCTGCCTTG	59.758	55.000	12.44	0.00	40.80	3.61
4449	4705	0.178992	TGGTAAAGCTGCTGCCTTGT	60.179	50.000	12.44	0.00	40.80	3.16
4450	4706	0.242017	GGTAAAGCTGCTGCCTTGTG	59.758	55.000	12.44	0.00	40.80	3.33
4451	4707	1.238439	GTAAAGCTGCTGCCTTGTGA	58.762	50.000	12.44	0.00	40.80	3.58
4452	4708	1.068954	GTAAAGCTGCTGCCTTGTGAC	60.069	52.381	12.44	0.00	40.80	3.67
4453	4709	1.458639	AAAGCTGCTGCCTTGTGACC	61.459	55.000	12.44	0.00	40.80	4.02
4454	4710	2.595463	GCTGCTGCCTTGTGACCA	60.595	61.111	3.85	0.00	0.00	4.02
4455	4711	1.975407	GCTGCTGCCTTGTGACCAT	60.975	57.895	3.85	0.00	0.00	3.55
4456	4712	1.880894	CTGCTGCCTTGTGACCATG	59.119	57.895	0.00	0.00	0.00	3.66
4457	4713	0.607217	CTGCTGCCTTGTGACCATGA	60.607	55.000	0.00	0.00	0.00	3.07
4458	4714	0.607217	TGCTGCCTTGTGACCATGAG	60.607	55.000	0.00	0.00	0.00	2.90
4459	4715	1.310933	GCTGCCTTGTGACCATGAGG	61.311	60.000	0.00	0.00	42.21	3.86
4469	4725	4.617875	CCATGAGGTCACGGGTTC	57.382	61.111	0.00	0.00	0.00	3.62
4470	4726	1.676968	CCATGAGGTCACGGGTTCA	59.323	57.895	0.00	0.00	0.00	3.18
4471	4727	0.036164	CCATGAGGTCACGGGTTCAA	59.964	55.000	0.00	0.00	0.00	2.69
4472	4728	1.442769	CATGAGGTCACGGGTTCAAG	58.557	55.000	0.00	0.00	0.00	3.02
4473	4729	1.056660	ATGAGGTCACGGGTTCAAGT	58.943	50.000	0.00	0.00	0.00	3.16
4474	4730	0.391597	TGAGGTCACGGGTTCAAGTC	59.608	55.000	0.00	0.00	0.00	3.01
4475	4731	0.320508	GAGGTCACGGGTTCAAGTCC	60.321	60.000	0.00	0.00	0.00	3.85
4476	4732	0.763223	AGGTCACGGGTTCAAGTCCT	60.763	55.000	0.00	0.00	0.00	3.85
4477	4733	0.602905	GGTCACGGGTTCAAGTCCTG	60.603	60.000	0.00	0.00	37.36	3.86
4478	4734	0.602905	GTCACGGGTTCAAGTCCTGG	60.603	60.000	0.00	0.00	35.79	4.45
4479	4735	0.761323	TCACGGGTTCAAGTCCTGGA	60.761	55.000	0.00	0.00	35.79	3.86
4480	4736	0.107831	CACGGGTTCAAGTCCTGGAA	59.892	55.000	0.00	0.00	35.79	3.53
4481	4737	0.841289	ACGGGTTCAAGTCCTGGAAA	59.159	50.000	0.00	0.00	35.79	3.13
4482	4738	1.235724	CGGGTTCAAGTCCTGGAAAC	58.764	55.000	0.00	0.00	0.00	2.78
4483	4739	1.476110	CGGGTTCAAGTCCTGGAAACA	60.476	52.381	0.00	0.00	32.36	2.83
4497	4753	4.431416	TGGAAACAGCCTCTTACAGAAA	57.569	40.909	0.00	0.00	35.01	2.52
4498	4754	4.985538	TGGAAACAGCCTCTTACAGAAAT	58.014	39.130	0.00	0.00	35.01	2.17
4499	4755	4.761739	TGGAAACAGCCTCTTACAGAAATG	59.238	41.667	0.00	0.00	35.01	2.32
4500	4756	4.762251	GGAAACAGCCTCTTACAGAAATGT	59.238	41.667	0.00	0.00	0.00	2.71
4501	4757	5.938125	GGAAACAGCCTCTTACAGAAATGTA	59.062	40.000	0.00	0.00	0.00	2.29
4502	4758	6.092807	GGAAACAGCCTCTTACAGAAATGTAG	59.907	42.308	0.00	0.00	0.00	2.74
4503	4759	5.091261	ACAGCCTCTTACAGAAATGTAGG	57.909	43.478	0.00	0.00	0.00	3.18
4504	4760	4.080863	ACAGCCTCTTACAGAAATGTAGGG	60.081	45.833	0.00	0.66	0.00	3.53
4505	4761	4.162320	CAGCCTCTTACAGAAATGTAGGGA	59.838	45.833	0.00	0.00	0.00	4.20
4506	4762	4.783227	AGCCTCTTACAGAAATGTAGGGAA	59.217	41.667	0.00	0.00	0.00	3.97
4507	4763	5.250774	AGCCTCTTACAGAAATGTAGGGAAA	59.749	40.000	0.00	0.00	0.00	3.13
4508	4764	5.586643	GCCTCTTACAGAAATGTAGGGAAAG	59.413	44.000	0.00	0.00	0.00	2.62
4509	4765	6.116126	CCTCTTACAGAAATGTAGGGAAAGG	58.884	44.000	0.00	0.00	0.00	3.11
4510	4766	5.497474	TCTTACAGAAATGTAGGGAAAGGC	58.503	41.667	0.00	0.00	0.00	4.35
4511	4767	5.250774	TCTTACAGAAATGTAGGGAAAGGCT	59.749	40.000	0.00	0.00	0.00	4.58
4512	4768	3.690460	ACAGAAATGTAGGGAAAGGCTG	58.310	45.455	0.00	0.00	0.00	4.85
4513	4769	2.424956	CAGAAATGTAGGGAAAGGCTGC	59.575	50.000	0.00	0.00	0.00	5.25
4514	4770	1.401905	GAAATGTAGGGAAAGGCTGCG	59.598	52.381	0.00	0.00	0.00	5.18
4515	4771	0.328258	AATGTAGGGAAAGGCTGCGT	59.672	50.000	0.00	0.00	0.00	5.24
4516	4772	1.200519	ATGTAGGGAAAGGCTGCGTA	58.799	50.000	0.00	0.00	0.00	4.42
4517	4773	0.248289	TGTAGGGAAAGGCTGCGTAC	59.752	55.000	0.00	0.00	37.28	3.67
4518	4774	0.248289	GTAGGGAAAGGCTGCGTACA	59.752	55.000	0.00	0.00	36.89	2.90
4519	4775	0.978151	TAGGGAAAGGCTGCGTACAA	59.022	50.000	0.00	0.00	0.00	2.41
4520	4776	0.328258	AGGGAAAGGCTGCGTACAAT	59.672	50.000	0.00	0.00	0.00	2.71
4521	4777	1.557832	AGGGAAAGGCTGCGTACAATA	59.442	47.619	0.00	0.00	0.00	1.90
4522	4778	1.940613	GGGAAAGGCTGCGTACAATAG	59.059	52.381	0.00	0.00	0.00	1.73
4523	4779	2.419574	GGGAAAGGCTGCGTACAATAGA	60.420	50.000	0.00	0.00	0.00	1.98
4524	4780	2.608090	GGAAAGGCTGCGTACAATAGAC	59.392	50.000	0.00	0.00	0.00	2.59
4525	4781	2.311124	AAGGCTGCGTACAATAGACC	57.689	50.000	0.00	0.00	0.00	3.85
4526	4782	0.464452	AGGCTGCGTACAATAGACCC	59.536	55.000	0.00	0.00	0.00	4.46
4527	4783	0.177141	GGCTGCGTACAATAGACCCA	59.823	55.000	0.00	0.00	0.00	4.51
4528	4784	1.406341	GGCTGCGTACAATAGACCCAA	60.406	52.381	0.00	0.00	0.00	4.12
4529	4785	2.352388	GCTGCGTACAATAGACCCAAA	58.648	47.619	0.00	0.00	0.00	3.28
4530	4786	2.351726	GCTGCGTACAATAGACCCAAAG	59.648	50.000	0.00	0.00	0.00	2.77
4531	4787	3.596214	CTGCGTACAATAGACCCAAAGT	58.404	45.455	0.00	0.00	0.00	2.66
4532	4788	3.331150	TGCGTACAATAGACCCAAAGTG	58.669	45.455	0.00	0.00	0.00	3.16
4533	4789	2.676342	GCGTACAATAGACCCAAAGTGG	59.324	50.000	0.00	0.00	37.25	4.00
4534	4790	3.867216	GCGTACAATAGACCCAAAGTGGT	60.867	47.826	0.00	0.00	42.79	4.16
4541	4797	1.844130	ACCCAAAGTGGTCAGACCC	59.156	57.895	17.59	8.45	37.50	4.46
4542	4798	0.697854	ACCCAAAGTGGTCAGACCCT	60.698	55.000	17.59	10.65	37.50	4.34
4543	4799	0.478507	CCCAAAGTGGTCAGACCCTT	59.521	55.000	17.59	15.76	37.50	3.95
4544	4800	1.545651	CCCAAAGTGGTCAGACCCTTC	60.546	57.143	17.59	7.68	37.50	3.46
4545	4801	1.512926	CAAAGTGGTCAGACCCTTCG	58.487	55.000	17.59	5.83	37.50	3.79
4546	4802	0.250338	AAAGTGGTCAGACCCTTCGC	60.250	55.000	17.59	0.00	37.50	4.70
4547	4803	2.047179	GTGGTCAGACCCTTCGCC	60.047	66.667	17.59	0.00	37.50	5.54
4548	4804	3.691342	TGGTCAGACCCTTCGCCG	61.691	66.667	17.59	0.00	37.50	6.46
4549	4805	4.452733	GGTCAGACCCTTCGCCGG	62.453	72.222	8.65	0.00	30.04	6.13
4550	4806	3.379445	GTCAGACCCTTCGCCGGA	61.379	66.667	5.05	0.00	0.00	5.14
4551	4807	3.379445	TCAGACCCTTCGCCGGAC	61.379	66.667	5.05	0.00	0.00	4.79
4552	4808	4.452733	CAGACCCTTCGCCGGACC	62.453	72.222	5.05	0.00	0.00	4.46
4581	4837	2.203070	GGAGCTACATGCACCGGG	60.203	66.667	6.32	0.00	42.21	5.73
4582	4838	2.897350	GAGCTACATGCACCGGGC	60.897	66.667	6.32	7.25	45.94	6.13
4583	4839	3.391665	GAGCTACATGCACCGGGCT	62.392	63.158	6.32	0.81	45.94	5.19
4584	4840	3.204827	GCTACATGCACCGGGCTG	61.205	66.667	6.32	9.21	45.15	4.85
4585	4841	3.204827	CTACATGCACCGGGCTGC	61.205	66.667	6.32	8.50	45.15	5.25
4586	4842	4.794648	TACATGCACCGGGCTGCC	62.795	66.667	11.05	11.05	45.15	4.85
4592	4848	2.917227	CACCGGGCTGCCCTTTTT	60.917	61.111	33.39	13.23	42.67	1.94
4808	5064	2.527624	AGTGGCCTCAGTCCTGCA	60.528	61.111	3.32	0.00	0.00	4.41
4920	5176	5.914898	GGCAACACCAATATCCTTAAAGT	57.085	39.130	0.00	0.00	38.86	2.66
5010	5266	6.326323	TGCTGATACTATTATGTGGTTCCAGA	59.674	38.462	0.00	0.00	0.00	3.86
5109	5365	1.078823	TCTGGGGAAGGCTGAGTTCTA	59.921	52.381	0.00	0.00	0.00	2.10
5145	5405	4.135306	GGCCTTTGTACCTCTTAATAGGC	58.865	47.826	6.80	0.00	44.72	3.93
5685	6047	0.179108	GGTGTCATGCTCGGTAGACC	60.179	60.000	0.00	0.00	0.00	3.85
5727	6089	0.753262	CTTCTACCATGACCCCTCCG	59.247	60.000	0.00	0.00	0.00	4.63
5792	6442	4.207891	AGGAGTACACAACATGGTGATC	57.792	45.455	19.90	6.91	41.32	2.92
5954	6604	6.969993	AGGGATCTCAAGATACAGAGTTAC	57.030	41.667	4.66	0.00	37.11	2.50
6153	6803	5.428253	GTTAGTGCATCCATAAGACAAGGA	58.572	41.667	0.00	0.00	35.59	3.36
6319	6969	1.227409	CACGGGCAAACAAAACCCC	60.227	57.895	0.00	0.00	40.86	4.95
6446	7097	0.899253	CACATGGGTCATGGCCAACA	60.899	55.000	20.13	8.35	45.16	3.33
6503	7157	1.254026	GCCGGCTTTAGAAAAGGGTT	58.746	50.000	22.15	0.00	0.00	4.11
6542	7196	1.408969	ACCACCCAATTTTGTTCGCT	58.591	45.000	0.00	0.00	0.00	4.93
6564	7218	6.652481	CGCTGGTAACTAGGTAGCTATACTAA	59.348	42.308	17.45	0.00	31.54	2.24
6742	7396	1.065126	GCCAATCTGCTACAAGGTCCT	60.065	52.381	0.00	0.00	0.00	3.85
6836	7490	0.169672	CAAGAATGGTGCTTGAGCGG	59.830	55.000	0.00	0.00	44.16	5.52
7127	7786	5.666969	TGACAAGTGAAAGACCAATAACG	57.333	39.130	0.00	0.00	0.00	3.18
7180	7839	8.657074	ACCAATTTTTGCTACTTAAAAAGACC	57.343	30.769	0.00	0.00	39.51	3.85
7187	7846	5.609423	TGCTACTTAAAAAGACCGTTGGTA	58.391	37.500	0.00	0.00	35.25	3.25
7197	7856	3.811083	AGACCGTTGGTAAATGTGTTGA	58.189	40.909	0.00	0.00	35.25	3.18
7198	7857	4.200874	AGACCGTTGGTAAATGTGTTGAA	58.799	39.130	0.00	0.00	35.25	2.69
7199	7858	4.274950	AGACCGTTGGTAAATGTGTTGAAG	59.725	41.667	0.00	0.00	35.25	3.02
7200	7859	4.200874	ACCGTTGGTAAATGTGTTGAAGA	58.799	39.130	0.00	0.00	32.11	2.87
7201	7860	4.825085	ACCGTTGGTAAATGTGTTGAAGAT	59.175	37.500	0.00	0.00	32.11	2.40
7202	7861	5.048991	ACCGTTGGTAAATGTGTTGAAGATC	60.049	40.000	0.00	0.00	32.11	2.75
7203	7862	5.390613	CGTTGGTAAATGTGTTGAAGATCC	58.609	41.667	0.00	0.00	0.00	3.36
7204	7863	5.049060	CGTTGGTAAATGTGTTGAAGATCCA	60.049	40.000	0.00	0.00	0.00	3.41
7205	7864	6.349280	CGTTGGTAAATGTGTTGAAGATCCAT	60.349	38.462	0.00	0.00	0.00	3.41
7206	7865	6.757897	TGGTAAATGTGTTGAAGATCCATC	57.242	37.500	0.00	0.00	0.00	3.51
7207	7866	5.652014	TGGTAAATGTGTTGAAGATCCATCC	59.348	40.000	0.00	0.00	0.00	3.51
7208	7867	5.067805	GGTAAATGTGTTGAAGATCCATCCC	59.932	44.000	0.00	0.00	0.00	3.85
7209	7868	2.806945	TGTGTTGAAGATCCATCCCC	57.193	50.000	0.00	0.00	0.00	4.81
7210	7869	2.278245	TGTGTTGAAGATCCATCCCCT	58.722	47.619	0.00	0.00	0.00	4.79
7211	7870	2.239654	TGTGTTGAAGATCCATCCCCTC	59.760	50.000	0.00	0.00	0.00	4.30
7212	7871	1.846439	TGTTGAAGATCCATCCCCTCC	59.154	52.381	0.00	0.00	0.00	4.30
7213	7872	1.143889	GTTGAAGATCCATCCCCTCCC	59.856	57.143	0.00	0.00	0.00	4.30
7214	7873	0.649992	TGAAGATCCATCCCCTCCCT	59.350	55.000	0.00	0.00	0.00	4.20
7215	7874	1.357137	GAAGATCCATCCCCTCCCTC	58.643	60.000	0.00	0.00	0.00	4.30
7216	7875	0.104197	AAGATCCATCCCCTCCCTCC	60.104	60.000	0.00	0.00	0.00	4.30
7217	7876	1.015131	AGATCCATCCCCTCCCTCCT	61.015	60.000	0.00	0.00	0.00	3.69
7218	7877	0.104197	GATCCATCCCCTCCCTCCTT	60.104	60.000	0.00	0.00	0.00	3.36
7219	7878	0.104197	ATCCATCCCCTCCCTCCTTC	60.104	60.000	0.00	0.00	0.00	3.46
7220	7879	2.143419	CCATCCCCTCCCTCCTTCG	61.143	68.421	0.00	0.00	0.00	3.79
7221	7880	1.383248	CATCCCCTCCCTCCTTCGT	60.383	63.158	0.00	0.00	0.00	3.85
7222	7881	0.105658	CATCCCCTCCCTCCTTCGTA	60.106	60.000	0.00	0.00	0.00	3.43
7223	7882	0.868186	ATCCCCTCCCTCCTTCGTAT	59.132	55.000	0.00	0.00	0.00	3.06
7224	7883	0.187851	TCCCCTCCCTCCTTCGTATC	59.812	60.000	0.00	0.00	0.00	2.24
7225	7884	0.188834	CCCCTCCCTCCTTCGTATCT	59.811	60.000	0.00	0.00	0.00	1.98
7226	7885	1.428139	CCCCTCCCTCCTTCGTATCTA	59.572	57.143	0.00	0.00	0.00	1.98
7227	7886	2.043252	CCCCTCCCTCCTTCGTATCTAT	59.957	54.545	0.00	0.00	0.00	1.98
7228	7887	3.358118	CCCTCCCTCCTTCGTATCTATC	58.642	54.545	0.00	0.00	0.00	2.08
7229	7888	3.245300	CCCTCCCTCCTTCGTATCTATCA	60.245	52.174	0.00	0.00	0.00	2.15
7230	7889	4.570933	CCCTCCCTCCTTCGTATCTATCAT	60.571	50.000	0.00	0.00	0.00	2.45
7231	7890	5.020132	CCTCCCTCCTTCGTATCTATCATT	58.980	45.833	0.00	0.00	0.00	2.57
7232	7891	6.188407	CCTCCCTCCTTCGTATCTATCATTA	58.812	44.000	0.00	0.00	0.00	1.90
7233	7892	6.663953	CCTCCCTCCTTCGTATCTATCATTAA	59.336	42.308	0.00	0.00	0.00	1.40
7234	7893	7.178628	CCTCCCTCCTTCGTATCTATCATTAAA	59.821	40.741	0.00	0.00	0.00	1.52
7235	7894	8.666129	TCCCTCCTTCGTATCTATCATTAAAT	57.334	34.615	0.00	0.00	0.00	1.40
7292	7990	5.640147	ACTTCTAATGTTGACCCCATTTGA	58.360	37.500	0.00	0.00	34.03	2.69
7293	7991	6.074648	ACTTCTAATGTTGACCCCATTTGAA	58.925	36.000	8.79	8.79	39.76	2.69
7294	7992	6.725834	ACTTCTAATGTTGACCCCATTTGAAT	59.274	34.615	9.31	1.31	40.56	2.57
7296	7994	8.657387	TTCTAATGTTGACCCCATTTGAATTA	57.343	30.769	0.00	0.00	38.33	1.40
7297	7995	8.837099	TCTAATGTTGACCCCATTTGAATTAT	57.163	30.769	0.00	0.00	33.31	1.28
7298	7996	8.912988	TCTAATGTTGACCCCATTTGAATTATC	58.087	33.333	0.00	0.00	33.31	1.75
7349	8047	6.218195	AGGGGATGCTAATTCCAATATCAA	57.782	37.500	0.00	0.00	32.12	2.57
7540	8239	5.729510	ACTGAACTCTGCTTTAGATCCTTC	58.270	41.667	0.00	0.00	34.21	3.46
7659	8358	6.478512	TCCCTTTTTGTTTTCATACAAGCT	57.521	33.333	0.00	0.00	39.06	3.74
7660	8359	6.883744	TCCCTTTTTGTTTTCATACAAGCTT	58.116	32.000	0.00	0.00	39.06	3.74
7688	8388	8.531146	TGAGTCTACATTTAATGACACAGATCA	58.469	33.333	12.28	9.97	32.41	2.92
7717	8417	4.492494	TTATGATCATGTGGAGCAGTGT	57.508	40.909	18.72	0.00	46.56	3.55
7732	8432	5.972107	AGCAGTGTTATTGAAGATTGCTT	57.028	34.783	0.00	0.00	45.84	3.91
7965	8670	7.497925	AGTTGATAAAAGACAGTGAACTTCC	57.502	36.000	0.00	0.00	0.00	3.46
7992	8698	6.544038	AAGCATTTGCAATGGTAAAGAAAC	57.456	33.333	0.00	0.00	45.16	2.78
8322	9028	6.054941	TCAAAATGAGTACACTCTTTGCTGA	58.945	36.000	14.60	14.01	43.25	4.26
8420	9126	5.479306	TCTCAAGTTGTAATAGACACCTGC	58.521	41.667	2.11	0.00	37.96	4.85
8421	9127	5.011635	TCTCAAGTTGTAATAGACACCTGCA	59.988	40.000	2.11	0.00	37.96	4.41
8424	9130	7.390823	TCAAGTTGTAATAGACACCTGCATTA	58.609	34.615	2.11	0.00	37.96	1.90
8694	9400	4.258702	TCCAGTTGAGCTTTCAGAGTAC	57.741	45.455	0.00	0.00	0.00	2.73
8695	9401	3.898123	TCCAGTTGAGCTTTCAGAGTACT	59.102	43.478	0.00	0.00	0.00	2.73
8697	9403	4.241681	CAGTTGAGCTTTCAGAGTACTCC	58.758	47.826	19.38	2.89	0.00	3.85
8698	9404	3.259625	AGTTGAGCTTTCAGAGTACTCCC	59.740	47.826	19.38	0.00	0.00	4.30
8700	9406	3.093057	TGAGCTTTCAGAGTACTCCCTC	58.907	50.000	19.38	14.32	0.00	4.30
8701	9407	2.429250	GAGCTTTCAGAGTACTCCCTCC	59.571	54.545	19.38	3.81	31.53	4.30
8702	9408	1.135333	GCTTTCAGAGTACTCCCTCCG	59.865	57.143	19.38	6.95	31.53	4.63
8703	9409	2.448453	CTTTCAGAGTACTCCCTCCGT	58.552	52.381	19.38	0.00	31.53	4.69
8704	9410	2.125773	TTCAGAGTACTCCCTCCGTC	57.874	55.000	19.38	0.00	31.53	4.79
8705	9411	0.255318	TCAGAGTACTCCCTCCGTCC	59.745	60.000	19.38	0.00	31.53	4.79
8706	9412	0.752376	CAGAGTACTCCCTCCGTCCC	60.752	65.000	19.38	0.00	31.53	4.46
8707	9413	1.212934	AGAGTACTCCCTCCGTCCCA	61.213	60.000	19.38	0.00	31.53	4.37
8708	9414	0.324091	GAGTACTCCCTCCGTCCCAA	60.324	60.000	12.13	0.00	0.00	4.12
8710	9416	1.201424	GTACTCCCTCCGTCCCAAAT	58.799	55.000	0.00	0.00	0.00	2.32
8712	9418	1.961133	ACTCCCTCCGTCCCAAATAA	58.039	50.000	0.00	0.00	0.00	1.40
8713	9419	1.838077	ACTCCCTCCGTCCCAAATAAG	59.162	52.381	0.00	0.00	0.00	1.73
8714	9420	1.838077	CTCCCTCCGTCCCAAATAAGT	59.162	52.381	0.00	0.00	0.00	2.24
8715	9421	1.557832	TCCCTCCGTCCCAAATAAGTG	59.442	52.381	0.00	0.00	0.00	3.16
8717	9423	2.629051	CCTCCGTCCCAAATAAGTGTC	58.371	52.381	0.00	0.00	0.00	3.67
8719	9425	3.522553	CTCCGTCCCAAATAAGTGTCTC	58.477	50.000	0.00	0.00	0.00	3.36
8721	9427	3.325425	TCCGTCCCAAATAAGTGTCTCAA	59.675	43.478	0.00	0.00	0.00	3.02
8723	9429	4.700213	CCGTCCCAAATAAGTGTCTCAATT	59.300	41.667	0.00	0.00	0.00	2.32
8724	9430	5.183140	CCGTCCCAAATAAGTGTCTCAATTT	59.817	40.000	0.00	0.00	0.00	1.82
8725	9431	6.294508	CCGTCCCAAATAAGTGTCTCAATTTT	60.295	38.462	0.00	0.00	0.00	1.82
8726	9432	7.094549	CCGTCCCAAATAAGTGTCTCAATTTTA	60.095	37.037	0.00	0.00	0.00	1.52
8727	9433	8.458843	CGTCCCAAATAAGTGTCTCAATTTTAT	58.541	33.333	0.00	0.00	0.00	1.40
8763	9469	8.828688	ATACAAAGTTGTACTAAGGTTGAGAC	57.171	34.615	6.05	0.00	45.47	3.36
8764	9470	6.646267	ACAAAGTTGTACTAAGGTTGAGACA	58.354	36.000	0.00	0.00	40.16	3.41
8766	9472	6.481434	AAGTTGTACTAAGGTTGAGACACT	57.519	37.500	0.00	0.00	0.00	3.55
8768	9474	7.592885	AGTTGTACTAAGGTTGAGACACTTA	57.407	36.000	0.00	0.00	0.00	2.24
8769	9475	8.191534	AGTTGTACTAAGGTTGAGACACTTAT	57.808	34.615	0.00	0.00	0.00	1.73
8771	9477	9.269453	GTTGTACTAAGGTTGAGACACTTATTT	57.731	33.333	0.00	0.00	0.00	1.40
8773	9479	9.268268	TGTACTAAGGTTGAGACACTTATTTTG	57.732	33.333	0.00	0.00	0.00	2.44
8774	9480	7.745620	ACTAAGGTTGAGACACTTATTTTGG	57.254	36.000	0.00	0.00	0.00	3.28
8775	9481	6.715264	ACTAAGGTTGAGACACTTATTTTGGG	59.285	38.462	0.00	0.00	0.00	4.12
8776	9482	5.319043	AGGTTGAGACACTTATTTTGGGA	57.681	39.130	0.00	0.00	0.00	4.37
8777	9483	5.070685	AGGTTGAGACACTTATTTTGGGAC	58.929	41.667	0.00	0.00	0.00	4.46
8780	9486	3.325425	TGAGACACTTATTTTGGGACGGA	59.675	43.478	0.00	0.00	0.00	4.69
8781	9487	4.019681	TGAGACACTTATTTTGGGACGGAT	60.020	41.667	0.00	0.00	0.00	4.18
8803	9509	6.942576	GGATAAAAGATAGGGAAAGCTGCATA	59.057	38.462	1.02	0.00	0.00	3.14
8829	9535	5.183014	TCTTGCAGTTATGTCGTCGATAT	57.817	39.130	9.54	9.54	0.00	1.63
8928	9634	3.270877	AGAAACAGTGTTATGATCGGCC	58.729	45.455	9.37	0.00	0.00	6.13
9025	9741	7.310664	CGCCTCGAGGATTATATAAACACTTA	58.689	38.462	35.69	0.00	37.39	2.24
9188	9942	1.689412	CCTTCCACCCCTACAACCC	59.311	63.158	0.00	0.00	0.00	4.11
9212	9966	2.445845	TGGGCCTGGTAGGATCCG	60.446	66.667	5.98	0.00	37.67	4.18
9248	10099	5.687166	TTGGTATTAGTTGTCTCGGGATT	57.313	39.130	0.00	0.00	0.00	3.01
9283	10134	3.503839	TTCCCACCGCCACCCTTT	61.504	61.111	0.00	0.00	0.00	3.11
9466	10324	2.514824	GCATCCGCACCTTCCTCC	60.515	66.667	0.00	0.00	38.36	4.30
9473	10331	2.297129	GCACCTTCCTCCTGAGCCT	61.297	63.158	0.00	0.00	0.00	4.58
9506	10364	4.484872	GCCTGGGCCCTTCGGTAC	62.485	72.222	25.70	5.35	34.56	3.34
9507	10365	2.687566	CCTGGGCCCTTCGGTACT	60.688	66.667	25.70	0.00	0.00	2.73
9508	10366	2.584608	CTGGGCCCTTCGGTACTG	59.415	66.667	25.70	0.00	0.00	2.74
9509	10367	2.203877	TGGGCCCTTCGGTACTGT	60.204	61.111	25.70	0.00	0.00	3.55
9510	10368	2.267961	GGGCCCTTCGGTACTGTG	59.732	66.667	17.04	0.00	0.00	3.66
9511	10369	2.436115	GGCCCTTCGGTACTGTGC	60.436	66.667	0.64	1.12	0.00	4.57
9512	10370	2.436115	GCCCTTCGGTACTGTGCC	60.436	66.667	4.68	4.68	0.00	5.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	6.202954	CCCTCCGCAAACTAATATAAAGAGTG	59.797	42.308	0.00	0.00	0.00	3.51
28	29	6.099269	TCCCTCCGCAAACTAATATAAAGAGT	59.901	38.462	0.00	0.00	0.00	3.24
31	32	6.202954	CACTCCCTCCGCAAACTAATATAAAG	59.797	42.308	0.00	0.00	0.00	1.85
32	33	6.053005	CACTCCCTCCGCAAACTAATATAAA	58.947	40.000	0.00	0.00	0.00	1.40
45	46	2.521958	TTAGCAAGCACTCCCTCCGC	62.522	60.000	0.00	0.00	0.00	5.54
50	51	1.519408	TCGTTTTAGCAAGCACTCCC	58.481	50.000	0.00	0.00	0.00	4.30
56	57	4.939509	TCCAACTATCGTTTTAGCAAGC	57.060	40.909	0.00	0.00	0.00	4.01
60	61	8.868635	ACTACTAATCCAACTATCGTTTTAGC	57.131	34.615	1.83	0.00	29.89	3.09
201	207	8.282592	GCTTGTGTATGTGTGGTTATGTATATG	58.717	37.037	0.00	0.00	0.00	1.78
209	215	4.079980	ACAGCTTGTGTATGTGTGGTTA	57.920	40.909	0.00	0.00	37.75	2.85
237	243	0.991146	TTGTGGATGCCCTAAGAGCA	59.009	50.000	0.00	0.00	45.94	4.26
238	244	1.952296	CATTGTGGATGCCCTAAGAGC	59.048	52.381	0.00	0.00	0.00	4.09
239	245	3.287867	ACATTGTGGATGCCCTAAGAG	57.712	47.619	0.00	0.00	39.47	2.85
240	246	4.717877	CATACATTGTGGATGCCCTAAGA	58.282	43.478	0.00	0.00	39.47	2.10
263	269	6.798482	TGATCATTTAGCACTAGCAATTTGG	58.202	36.000	0.00	0.00	45.49	3.28
298	304	3.551485	TCACAATGTGTCTTATCGATGCG	59.449	43.478	13.55	0.00	34.79	4.73
302	308	4.020573	ACCCTTCACAATGTGTCTTATCGA	60.021	41.667	13.55	0.00	34.79	3.59
305	311	4.202567	ACCACCCTTCACAATGTGTCTTAT	60.203	41.667	13.55	0.00	34.79	1.73
306	312	3.137544	ACCACCCTTCACAATGTGTCTTA	59.862	43.478	13.55	0.00	34.79	2.10
307	313	2.091885	ACCACCCTTCACAATGTGTCTT	60.092	45.455	13.55	0.00	34.79	3.01
320	326	2.441750	TCTTTGACTTAGCACCACCCTT	59.558	45.455	0.00	0.00	0.00	3.95
322	328	2.561478	TCTTTGACTTAGCACCACCC	57.439	50.000	0.00	0.00	0.00	4.61
331	337	7.331193	GCTTCGGTTCTCTATTTCTTTGACTTA	59.669	37.037	0.00	0.00	0.00	2.24
334	340	5.639931	AGCTTCGGTTCTCTATTTCTTTGAC	59.360	40.000	0.00	0.00	0.00	3.18
347	353	2.219325	CTCGCAGGAGCTTCGGTTCT	62.219	60.000	0.00	0.00	39.10	3.01
405	411	3.783642	AGTAGCTGAAGGTAGGAGAGAGA	59.216	47.826	0.00	0.00	0.00	3.10
417	423	2.159170	CGGAGGGAGAAAGTAGCTGAAG	60.159	54.545	0.00	0.00	0.00	3.02
421	427	1.331399	GGCGGAGGGAGAAAGTAGCT	61.331	60.000	0.00	0.00	0.00	3.32
443	449	2.798499	GCTAAGCTCATGCATGCCAAAG	60.798	50.000	22.25	14.62	42.74	2.77
476	482	9.846248	GCTCTGACACAAATTAACATAGAAAAT	57.154	29.630	0.00	0.00	0.00	1.82
477	483	9.066892	AGCTCTGACACAAATTAACATAGAAAA	57.933	29.630	0.00	0.00	0.00	2.29
478	484	8.621532	AGCTCTGACACAAATTAACATAGAAA	57.378	30.769	0.00	0.00	0.00	2.52
479	485	8.506437	CAAGCTCTGACACAAATTAACATAGAA	58.494	33.333	0.00	0.00	0.00	2.10
480	486	7.119699	CCAAGCTCTGACACAAATTAACATAGA	59.880	37.037	0.00	0.00	0.00	1.98
481	487	7.119699	TCCAAGCTCTGACACAAATTAACATAG	59.880	37.037	0.00	0.00	0.00	2.23
482	488	6.939730	TCCAAGCTCTGACACAAATTAACATA	59.060	34.615	0.00	0.00	0.00	2.29
483	489	5.769662	TCCAAGCTCTGACACAAATTAACAT	59.230	36.000	0.00	0.00	0.00	2.71
484	490	5.008613	GTCCAAGCTCTGACACAAATTAACA	59.991	40.000	9.95	0.00	0.00	2.41
485	491	5.452777	GTCCAAGCTCTGACACAAATTAAC	58.547	41.667	9.95	0.00	0.00	2.01
486	492	4.518970	GGTCCAAGCTCTGACACAAATTAA	59.481	41.667	15.18	0.00	33.09	1.40
487	493	4.072131	GGTCCAAGCTCTGACACAAATTA	58.928	43.478	15.18	0.00	33.09	1.40
488	494	2.887152	GGTCCAAGCTCTGACACAAATT	59.113	45.455	15.18	0.00	33.09	1.82
489	495	2.508526	GGTCCAAGCTCTGACACAAAT	58.491	47.619	15.18	0.00	33.09	2.32
490	496	1.476833	GGGTCCAAGCTCTGACACAAA	60.477	52.381	15.18	0.00	34.97	2.83
491	497	0.108585	GGGTCCAAGCTCTGACACAA	59.891	55.000	15.18	0.00	34.97	3.33
492	498	1.053835	TGGGTCCAAGCTCTGACACA	61.054	55.000	14.62	14.62	42.36	3.72
493	499	0.326264	ATGGGTCCAAGCTCTGACAC	59.674	55.000	15.18	12.79	35.43	3.67
494	500	1.067295	AATGGGTCCAAGCTCTGACA	58.933	50.000	15.18	0.00	33.09	3.58
495	501	2.206576	AAATGGGTCCAAGCTCTGAC	57.793	50.000	6.97	6.97	0.00	3.51
496	502	2.158475	ACAAAATGGGTCCAAGCTCTGA	60.158	45.455	0.00	0.00	0.00	3.27
497	503	2.242043	ACAAAATGGGTCCAAGCTCTG	58.758	47.619	0.00	0.00	0.00	3.35
498	504	2.683211	ACAAAATGGGTCCAAGCTCT	57.317	45.000	0.00	0.00	0.00	4.09
499	505	3.686016	TCTACAAAATGGGTCCAAGCTC	58.314	45.455	0.00	0.00	0.00	4.09
500	506	3.806949	TCTACAAAATGGGTCCAAGCT	57.193	42.857	0.00	0.00	0.00	3.74
501	507	6.715347	AATATCTACAAAATGGGTCCAAGC	57.285	37.500	0.00	0.00	0.00	4.01
502	508	7.491682	CCAAATATCTACAAAATGGGTCCAAG	58.508	38.462	0.00	0.00	0.00	3.61
503	509	6.127196	GCCAAATATCTACAAAATGGGTCCAA	60.127	38.462	0.00	0.00	0.00	3.53
504	510	5.362430	GCCAAATATCTACAAAATGGGTCCA	59.638	40.000	0.00	0.00	0.00	4.02
505	511	5.362430	TGCCAAATATCTACAAAATGGGTCC	59.638	40.000	0.00	0.00	0.00	4.46
506	512	6.463995	TGCCAAATATCTACAAAATGGGTC	57.536	37.500	0.00	0.00	0.00	4.46
507	513	6.865834	TTGCCAAATATCTACAAAATGGGT	57.134	33.333	0.00	0.00	0.00	4.51
508	514	8.641541	AGTATTGCCAAATATCTACAAAATGGG	58.358	33.333	0.00	0.00	31.03	4.00
518	524	9.851686	TCTTCAATGTAGTATTGCCAAATATCT	57.148	29.630	0.00	0.00	31.03	1.98
520	526	9.851686	TCTCTTCAATGTAGTATTGCCAAATAT	57.148	29.630	0.00	0.00	31.03	1.28
521	527	9.679661	TTCTCTTCAATGTAGTATTGCCAAATA	57.320	29.630	0.00	0.00	0.00	1.40
522	528	8.579850	TTCTCTTCAATGTAGTATTGCCAAAT	57.420	30.769	0.00	0.00	0.00	2.32
523	529	7.994425	TTCTCTTCAATGTAGTATTGCCAAA	57.006	32.000	0.00	0.00	0.00	3.28
524	530	7.828717	TCATTCTCTTCAATGTAGTATTGCCAA	59.171	33.333	0.00	0.00	35.56	4.52
525	531	7.337938	TCATTCTCTTCAATGTAGTATTGCCA	58.662	34.615	0.00	0.00	35.56	4.92
526	532	7.792374	TCATTCTCTTCAATGTAGTATTGCC	57.208	36.000	0.00	0.00	35.56	4.52
527	533	9.661187	CATTCATTCTCTTCAATGTAGTATTGC	57.339	33.333	0.00	0.00	35.56	3.56
535	541	9.635520	GTCAAATTCATTCATTCTCTTCAATGT	57.364	29.630	0.00	0.00	35.56	2.71
536	542	9.634163	TGTCAAATTCATTCATTCTCTTCAATG	57.366	29.630	0.00	0.00	35.39	2.82
537	543	9.635520	GTGTCAAATTCATTCATTCTCTTCAAT	57.364	29.630	0.00	0.00	0.00	2.57
538	544	8.084073	GGTGTCAAATTCATTCATTCTCTTCAA	58.916	33.333	0.00	0.00	0.00	2.69
539	545	7.231115	TGGTGTCAAATTCATTCATTCTCTTCA	59.769	33.333	0.00	0.00	0.00	3.02
540	546	7.596494	TGGTGTCAAATTCATTCATTCTCTTC	58.404	34.615	0.00	0.00	0.00	2.87
541	547	7.232127	ACTGGTGTCAAATTCATTCATTCTCTT	59.768	33.333	0.00	0.00	0.00	2.85
542	548	6.718454	ACTGGTGTCAAATTCATTCATTCTCT	59.282	34.615	0.00	0.00	0.00	3.10
543	549	6.805271	CACTGGTGTCAAATTCATTCATTCTC	59.195	38.462	0.00	0.00	0.00	2.87
544	550	6.684686	CACTGGTGTCAAATTCATTCATTCT	58.315	36.000	0.00	0.00	0.00	2.40
545	551	5.346822	GCACTGGTGTCAAATTCATTCATTC	59.653	40.000	2.64	0.00	0.00	2.67
546	552	5.232463	GCACTGGTGTCAAATTCATTCATT	58.768	37.500	2.64	0.00	0.00	2.57
547	553	4.322198	GGCACTGGTGTCAAATTCATTCAT	60.322	41.667	0.08	0.00	34.82	2.57
548	554	3.005684	GGCACTGGTGTCAAATTCATTCA	59.994	43.478	0.08	0.00	34.82	2.57
549	555	3.005684	TGGCACTGGTGTCAAATTCATTC	59.994	43.478	5.50	0.00	42.89	2.67
550	556	2.964464	TGGCACTGGTGTCAAATTCATT	59.036	40.909	5.50	0.00	42.89	2.57
551	557	2.596346	TGGCACTGGTGTCAAATTCAT	58.404	42.857	5.50	0.00	42.89	2.57
552	558	2.064434	TGGCACTGGTGTCAAATTCA	57.936	45.000	5.50	0.00	42.89	2.57
558	564	2.361757	CAGAATTTTGGCACTGGTGTCA	59.638	45.455	3.76	3.76	44.33	3.58
559	565	2.622942	TCAGAATTTTGGCACTGGTGTC	59.377	45.455	0.00	0.00	35.37	3.67
560	566	2.624838	CTCAGAATTTTGGCACTGGTGT	59.375	45.455	2.64	0.00	0.00	4.16
561	567	2.886523	TCTCAGAATTTTGGCACTGGTG	59.113	45.455	2.68	0.00	0.00	4.17
562	568	2.887152	GTCTCAGAATTTTGGCACTGGT	59.113	45.455	2.68	0.00	0.00	4.00
563	569	2.886523	TGTCTCAGAATTTTGGCACTGG	59.113	45.455	2.68	0.00	0.00	4.00
564	570	4.216902	TGATGTCTCAGAATTTTGGCACTG	59.783	41.667	0.00	0.00	0.00	3.66
565	571	4.217118	GTGATGTCTCAGAATTTTGGCACT	59.783	41.667	0.00	0.00	30.18	4.40
566	572	4.022935	TGTGATGTCTCAGAATTTTGGCAC	60.023	41.667	0.00	0.00	30.18	5.01
567	573	4.143543	TGTGATGTCTCAGAATTTTGGCA	58.856	39.130	0.00	0.00	30.18	4.92
568	574	4.771590	TGTGATGTCTCAGAATTTTGGC	57.228	40.909	0.00	0.00	30.18	4.52
569	575	8.492748	CAAATTTGTGATGTCTCAGAATTTTGG	58.507	33.333	10.15	6.51	43.49	3.28
570	576	9.251792	TCAAATTTGTGATGTCTCAGAATTTTG	57.748	29.630	17.47	17.62	45.57	2.44
571	577	9.252962	GTCAAATTTGTGATGTCTCAGAATTTT	57.747	29.630	17.47	4.39	38.07	1.82
572	578	8.415553	TGTCAAATTTGTGATGTCTCAGAATTT	58.584	29.630	17.47	0.00	38.05	1.82
573	579	7.864379	GTGTCAAATTTGTGATGTCTCAGAATT	59.136	33.333	17.47	0.00	34.90	2.17
574	580	7.365741	GTGTCAAATTTGTGATGTCTCAGAAT	58.634	34.615	17.47	0.00	34.90	2.40
575	581	6.238731	GGTGTCAAATTTGTGATGTCTCAGAA	60.239	38.462	17.47	0.00	33.20	3.02
576	582	5.239306	GGTGTCAAATTTGTGATGTCTCAGA	59.761	40.000	17.47	0.00	30.18	3.27
577	583	5.008911	TGGTGTCAAATTTGTGATGTCTCAG	59.991	40.000	17.47	0.00	30.18	3.35
578	584	4.886489	TGGTGTCAAATTTGTGATGTCTCA	59.114	37.500	17.47	4.87	0.00	3.27
579	585	5.437289	TGGTGTCAAATTTGTGATGTCTC	57.563	39.130	17.47	2.65	0.00	3.36
580	586	5.535783	TGATGGTGTCAAATTTGTGATGTCT	59.464	36.000	17.47	0.00	32.78	3.41
581	587	5.630680	GTGATGGTGTCAAATTTGTGATGTC	59.369	40.000	17.47	10.46	38.90	3.06
582	588	5.531634	GTGATGGTGTCAAATTTGTGATGT	58.468	37.500	17.47	1.90	38.90	3.06
583	589	4.618067	CGTGATGGTGTCAAATTTGTGATG	59.382	41.667	17.47	0.00	38.90	3.07
584	590	4.278170	ACGTGATGGTGTCAAATTTGTGAT	59.722	37.500	17.47	4.41	38.90	3.06
585	591	3.629855	ACGTGATGGTGTCAAATTTGTGA	59.370	39.130	17.47	3.20	38.90	3.58
586	592	3.963665	ACGTGATGGTGTCAAATTTGTG	58.036	40.909	17.47	0.00	38.90	3.33
587	593	4.142271	ACAACGTGATGGTGTCAAATTTGT	60.142	37.500	17.47	0.00	38.90	2.83
588	594	4.206814	CACAACGTGATGGTGTCAAATTTG	59.793	41.667	12.15	12.15	38.90	2.32
589	595	4.097135	TCACAACGTGATGGTGTCAAATTT	59.903	37.500	0.00	0.00	37.67	1.82
590	596	3.629855	TCACAACGTGATGGTGTCAAATT	59.370	39.130	0.00	0.00	37.67	1.82
591	597	3.210227	TCACAACGTGATGGTGTCAAAT	58.790	40.909	0.00	0.00	37.67	2.32
592	598	2.633488	TCACAACGTGATGGTGTCAAA	58.367	42.857	0.00	0.00	37.67	2.69
593	599	2.317530	TCACAACGTGATGGTGTCAA	57.682	45.000	0.00	0.00	37.67	3.18
602	608	1.346395	ACTAAGGGCATCACAACGTGA	59.654	47.619	0.00	0.00	46.90	4.35
603	609	1.732259	GACTAAGGGCATCACAACGTG	59.268	52.381	0.00	0.00	34.45	4.49
604	610	1.346395	TGACTAAGGGCATCACAACGT	59.654	47.619	0.00	0.00	0.00	3.99
605	611	1.732259	GTGACTAAGGGCATCACAACG	59.268	52.381	0.00	0.00	41.94	4.10
606	612	2.084546	GGTGACTAAGGGCATCACAAC	58.915	52.381	6.00	0.00	43.73	3.32
607	613	1.702401	TGGTGACTAAGGGCATCACAA	59.298	47.619	6.00	0.00	43.73	3.33
608	614	1.357137	TGGTGACTAAGGGCATCACA	58.643	50.000	6.00	0.00	43.73	3.58
609	615	2.084546	GTTGGTGACTAAGGGCATCAC	58.915	52.381	0.00	0.00	41.68	3.06
610	616	1.004277	GGTTGGTGACTAAGGGCATCA	59.996	52.381	0.00	0.00	0.00	3.07
616	622	3.412386	CCTCTTTGGTTGGTGACTAAGG	58.588	50.000	0.00	0.00	29.89	2.69
627	633	2.224793	GGAACTAGGTGCCTCTTTGGTT	60.225	50.000	0.00	0.00	38.35	3.67
691	697	6.205784	CGAAATGTCAACATGGTGTACTTTT	58.794	36.000	11.27	15.98	36.56	2.27
714	766	5.699839	AGCTTATTTACTGTTTTTCTGGCG	58.300	37.500	0.00	0.00	0.00	5.69
797	850	1.571773	AAATAAGCTCCGGGCAGGGT	61.572	55.000	15.92	1.28	44.79	4.34
801	854	0.393808	GTGGAAATAAGCTCCGGGCA	60.394	55.000	15.92	0.00	44.79	5.36
932	1151	0.898789	CTCGGGTACTGGTGACTGGT	60.899	60.000	0.00	0.00	33.92	4.00
933	1152	1.890894	CTCGGGTACTGGTGACTGG	59.109	63.158	0.00	0.00	33.92	4.00
934	1153	1.215647	GCTCGGGTACTGGTGACTG	59.784	63.158	0.00	0.00	33.92	3.51
935	1154	2.341101	CGCTCGGGTACTGGTGACT	61.341	63.158	0.00	0.00	33.92	3.41
936	1155	2.181021	CGCTCGGGTACTGGTGAC	59.819	66.667	0.00	0.00	33.92	3.67
937	1156	2.282674	ACGCTCGGGTACTGGTGA	60.283	61.111	0.00	0.00	33.92	4.02
938	1157	2.126071	CACGCTCGGGTACTGGTG	60.126	66.667	0.00	0.00	33.92	4.17
1002	1221	3.195698	GACCTCGTCGCAATGGCC	61.196	66.667	0.00	0.00	36.38	5.36
1066	1285	1.150567	CTGCGGAGGAAGAAGATGCG	61.151	60.000	0.00	0.00	0.00	4.73
1206	1425	2.879103	ACATTGACCAACCCCTAGTG	57.121	50.000	0.00	0.00	0.00	2.74
1262	1484	4.299796	GCAGGGGGTGGGAGCAAA	62.300	66.667	0.00	0.00	0.00	3.68
1318	1542	2.875485	GCGAGCGTCCTGTAGTGA	59.125	61.111	0.00	0.00	0.00	3.41
1498	1722	6.675413	ACCCCCATGAATCAAAATATCATG	57.325	37.500	7.77	7.77	46.31	3.07
1728	1977	7.916914	ACTGCGTTTAATATGGTACTTTTCT	57.083	32.000	0.00	0.00	0.00	2.52
1730	1979	7.806014	CACAACTGCGTTTAATATGGTACTTTT	59.194	33.333	0.00	0.00	0.00	2.27
1731	1980	7.302524	CACAACTGCGTTTAATATGGTACTTT	58.697	34.615	0.00	0.00	0.00	2.66
1732	1981	6.622028	GCACAACTGCGTTTAATATGGTACTT	60.622	38.462	0.00	0.00	32.44	2.24
1733	1982	5.163794	GCACAACTGCGTTTAATATGGTACT	60.164	40.000	0.00	0.00	32.44	2.73
1842	2094	6.071984	AGTTCTCTATTCTATGGTCGTGGAT	58.928	40.000	0.00	0.00	0.00	3.41
1920	2173	1.686325	TATGGTCGAGGAGCTTGCCC	61.686	60.000	0.00	0.00	0.00	5.36
1973	2226	2.031157	GGTCAAGAAAACGGTGGTGATG	60.031	50.000	0.00	0.00	0.00	3.07
1974	2227	2.227194	GGTCAAGAAAACGGTGGTGAT	58.773	47.619	0.00	0.00	0.00	3.06
1975	2228	1.065345	TGGTCAAGAAAACGGTGGTGA	60.065	47.619	0.00	0.00	0.00	4.02
1976	2229	1.064952	GTGGTCAAGAAAACGGTGGTG	59.935	52.381	0.00	0.00	0.00	4.17
1977	2230	1.340211	TGTGGTCAAGAAAACGGTGGT	60.340	47.619	0.00	0.00	0.00	4.16
1978	2231	1.384525	TGTGGTCAAGAAAACGGTGG	58.615	50.000	0.00	0.00	0.00	4.61
1979	2232	4.454161	TGATATGTGGTCAAGAAAACGGTG	59.546	41.667	0.00	0.00	0.00	4.94
1980	2233	4.454504	GTGATATGTGGTCAAGAAAACGGT	59.545	41.667	0.00	0.00	0.00	4.83
1981	2234	4.142687	GGTGATATGTGGTCAAGAAAACGG	60.143	45.833	0.00	0.00	0.00	4.44
1982	2235	4.142687	GGGTGATATGTGGTCAAGAAAACG	60.143	45.833	0.00	0.00	0.00	3.60
1983	2236	4.764823	TGGGTGATATGTGGTCAAGAAAAC	59.235	41.667	0.00	0.00	0.00	2.43
1984	2237	4.991776	TGGGTGATATGTGGTCAAGAAAA	58.008	39.130	0.00	0.00	0.00	2.29
1985	2238	4.649267	TGGGTGATATGTGGTCAAGAAA	57.351	40.909	0.00	0.00	0.00	2.52
1986	2239	4.649267	TTGGGTGATATGTGGTCAAGAA	57.351	40.909	0.00	0.00	0.00	2.52
1987	2240	4.860802	ATTGGGTGATATGTGGTCAAGA	57.139	40.909	0.00	0.00	0.00	3.02
1988	2241	5.474532	CCATATTGGGTGATATGTGGTCAAG	59.525	44.000	4.69	0.00	37.99	3.02
1989	2242	5.384336	CCATATTGGGTGATATGTGGTCAA	58.616	41.667	4.69	0.00	37.99	3.18
1990	2243	4.749476	GCCATATTGGGTGATATGTGGTCA	60.749	45.833	0.00	0.00	37.99	4.02
1991	2244	3.758554	GCCATATTGGGTGATATGTGGTC	59.241	47.826	0.00	0.00	37.99	4.02
1992	2245	3.139957	TGCCATATTGGGTGATATGTGGT	59.860	43.478	0.00	0.00	37.99	4.16
1993	2246	3.765381	TGCCATATTGGGTGATATGTGG	58.235	45.455	0.00	0.00	37.99	4.17
1994	2247	4.828939	ACTTGCCATATTGGGTGATATGTG	59.171	41.667	0.00	0.00	37.99	3.21
1995	2248	5.065613	ACTTGCCATATTGGGTGATATGT	57.934	39.130	0.00	0.00	37.99	2.29
1996	2249	5.771666	AGAACTTGCCATATTGGGTGATATG	59.228	40.000	0.00	0.00	38.19	1.78
1997	2250	5.957132	AGAACTTGCCATATTGGGTGATAT	58.043	37.500	0.00	0.00	38.19	1.63
1998	2251	5.387113	AGAACTTGCCATATTGGGTGATA	57.613	39.130	0.00	0.00	38.19	2.15
1999	2252	4.255510	AGAACTTGCCATATTGGGTGAT	57.744	40.909	0.00	0.00	38.19	3.06
2000	2253	3.737559	AGAACTTGCCATATTGGGTGA	57.262	42.857	0.00	0.00	38.19	4.02
2001	2254	4.269183	TGTAGAACTTGCCATATTGGGTG	58.731	43.478	0.00	0.00	38.19	4.61
2002	2255	4.526970	CTGTAGAACTTGCCATATTGGGT	58.473	43.478	0.00	0.00	38.19	4.51
2003	2256	3.885297	CCTGTAGAACTTGCCATATTGGG	59.115	47.826	0.00	0.00	38.19	4.12
2004	2257	4.780815	TCCTGTAGAACTTGCCATATTGG	58.219	43.478	0.00	0.00	41.55	3.16
2005	2258	5.240183	CCATCCTGTAGAACTTGCCATATTG	59.760	44.000	0.00	0.00	0.00	1.90
2006	2259	5.380043	CCATCCTGTAGAACTTGCCATATT	58.620	41.667	0.00	0.00	0.00	1.28
2007	2260	4.747931	GCCATCCTGTAGAACTTGCCATAT	60.748	45.833	0.00	0.00	0.00	1.78
2008	2261	3.433598	GCCATCCTGTAGAACTTGCCATA	60.434	47.826	0.00	0.00	0.00	2.74
2009	2262	2.684927	GCCATCCTGTAGAACTTGCCAT	60.685	50.000	0.00	0.00	0.00	4.40
2010	2263	1.340017	GCCATCCTGTAGAACTTGCCA	60.340	52.381	0.00	0.00	0.00	4.92
2042	2296	1.063027	CACTCAGCGCCATACAACATG	59.937	52.381	2.29	0.00	0.00	3.21
2077	2331	2.138320	CTGACTGTTGAACATGTCGCT	58.862	47.619	16.97	0.00	32.63	4.93
2095	2349	2.242572	CGCATCTCCGCCACATCTG	61.243	63.158	0.00	0.00	0.00	2.90
2098	2352	0.601046	CATACGCATCTCCGCCACAT	60.601	55.000	0.00	0.00	0.00	3.21
2155	2409	4.983671	TCTCGTATATCATCATTCCGGG	57.016	45.455	0.00	0.00	0.00	5.73
2213	2467	1.338107	ACCACCTCAGACGATGTTGA	58.662	50.000	0.00	0.00	0.00	3.18
2228	2482	1.202290	CGCTGAATATGCCCAAACCAC	60.202	52.381	0.00	0.00	0.00	4.16
2336	2590	6.069673	TCAGATCTCTCTTTACTGACTCCTCT	60.070	42.308	0.00	0.00	33.57	3.69
2345	2599	6.900186	TCCAATCCTTCAGATCTCTCTTTACT	59.100	38.462	0.00	0.00	32.47	2.24
2348	2602	5.725822	ACTCCAATCCTTCAGATCTCTCTTT	59.274	40.000	0.00	0.00	32.47	2.52
2357	2611	4.361783	TGGTGATACTCCAATCCTTCAGA	58.638	43.478	0.00	0.00	31.50	3.27
2384	2638	2.897969	CGCACCCCTATCCATAACTAGT	59.102	50.000	0.00	0.00	0.00	2.57
2389	2643	0.762418	CCACGCACCCCTATCCATAA	59.238	55.000	0.00	0.00	0.00	1.90
2445	2699	5.223382	AGGTGAAACATATAAGATCTCGCG	58.777	41.667	0.00	0.00	39.98	5.87
2458	2712	3.308904	GGGGTAGGCTAAAGGTGAAACAT	60.309	47.826	0.00	0.00	39.98	2.71
2459	2713	2.040679	GGGGTAGGCTAAAGGTGAAACA	59.959	50.000	0.00	0.00	39.98	2.83
2469	2723	3.492337	CAAACAAGTTGGGGTAGGCTAA	58.508	45.455	7.96	0.00	33.18	3.09
2576	2832	4.137116	TGCTTGTGAGTTGTGAGTAACT	57.863	40.909	0.00	0.00	43.24	2.24
2577	2833	4.094294	TGTTGCTTGTGAGTTGTGAGTAAC	59.906	41.667	0.00	0.00	34.77	2.50
2712	2968	7.860649	AAATGGTTAGGGGATACGATAACTA	57.139	36.000	0.00	0.00	37.93	2.24
3046	3302	4.892433	AGATTCTGGTCAGTGACTCAAAG	58.108	43.478	22.18	14.29	32.47	2.77
3426	3682	1.776662	ACATAGGAAGTCCGCTGCTA	58.223	50.000	0.00	0.00	42.08	3.49
3432	3688	3.130516	TCAGCTACAACATAGGAAGTCCG	59.869	47.826	0.00	0.00	42.08	4.79
3552	3808	6.389091	CAGAAAACAACAGCTGCCAATAATA	58.611	36.000	15.27	0.00	0.00	0.98
3703	3959	4.941263	TGTAACACAATAGGATGCTGTTCC	59.059	41.667	0.00	0.00	35.90	3.62
3769	4025	7.335171	TCATCATATGCATATCCACTTGCTAAC	59.665	37.037	16.46	0.00	39.60	2.34
4108	4364	4.278170	TCGTCAACTCCAATTCTGCATTTT	59.722	37.500	0.00	0.00	0.00	1.82
4198	4454	8.125448	GTGCACAAATTCACTTCCTAATATCTC	58.875	37.037	13.17	0.00	0.00	2.75
4416	4672	3.605749	TACCACTGCGCCAAGGCTC	62.606	63.158	4.18	1.20	39.32	4.70
4417	4673	2.690653	TTTACCACTGCGCCAAGGCT	62.691	55.000	4.18	0.00	39.32	4.58
4418	4674	2.200170	CTTTACCACTGCGCCAAGGC	62.200	60.000	4.18	0.00	37.85	4.35
4419	4675	1.875963	CTTTACCACTGCGCCAAGG	59.124	57.895	4.18	6.21	0.00	3.61
4420	4676	1.210155	GCTTTACCACTGCGCCAAG	59.790	57.895	4.18	0.00	0.00	3.61
4421	4677	1.228124	AGCTTTACCACTGCGCCAA	60.228	52.632	4.18	0.00	0.00	4.52
4422	4678	1.965930	CAGCTTTACCACTGCGCCA	60.966	57.895	4.18	0.00	0.00	5.69
4423	4679	2.870372	CAGCTTTACCACTGCGCC	59.130	61.111	4.18	0.00	0.00	6.53
4427	4683	0.607489	AGGCAGCAGCTTTACCACTG	60.607	55.000	0.00	0.00	41.70	3.66
4428	4684	0.111253	AAGGCAGCAGCTTTACCACT	59.889	50.000	0.00	0.00	38.40	4.00
4429	4685	0.242017	CAAGGCAGCAGCTTTACCAC	59.758	55.000	0.00	0.00	38.07	4.16
4430	4686	0.178992	ACAAGGCAGCAGCTTTACCA	60.179	50.000	0.00	0.00	38.07	3.25
4431	4687	0.242017	CACAAGGCAGCAGCTTTACC	59.758	55.000	0.00	0.00	38.07	2.85
4432	4688	1.068954	GTCACAAGGCAGCAGCTTTAC	60.069	52.381	0.00	0.00	38.07	2.01
4433	4689	1.238439	GTCACAAGGCAGCAGCTTTA	58.762	50.000	0.00	0.00	38.07	1.85
4434	4690	1.458639	GGTCACAAGGCAGCAGCTTT	61.459	55.000	0.00	0.00	41.17	3.51
4435	4691	1.900498	GGTCACAAGGCAGCAGCTT	60.900	57.895	0.00	0.00	41.70	3.74
4436	4692	2.282040	GGTCACAAGGCAGCAGCT	60.282	61.111	0.00	0.00	41.70	4.24
4437	4693	1.975407	ATGGTCACAAGGCAGCAGC	60.975	57.895	0.00	0.00	41.10	5.25
4438	4694	0.607217	TCATGGTCACAAGGCAGCAG	60.607	55.000	0.00	0.00	0.00	4.24
4439	4695	0.607217	CTCATGGTCACAAGGCAGCA	60.607	55.000	0.00	0.00	0.00	4.41
4440	4696	1.310933	CCTCATGGTCACAAGGCAGC	61.311	60.000	0.00	0.00	0.00	5.25
4441	4697	0.037303	ACCTCATGGTCACAAGGCAG	59.963	55.000	0.00	0.00	44.78	4.85
4442	4698	2.154139	ACCTCATGGTCACAAGGCA	58.846	52.632	0.00	0.00	44.78	4.75
4453	4709	1.270839	ACTTGAACCCGTGACCTCATG	60.271	52.381	0.00	0.00	0.00	3.07
4454	4710	1.002087	GACTTGAACCCGTGACCTCAT	59.998	52.381	0.00	0.00	0.00	2.90
4455	4711	0.391597	GACTTGAACCCGTGACCTCA	59.608	55.000	0.00	0.00	0.00	3.86
4456	4712	0.320508	GGACTTGAACCCGTGACCTC	60.321	60.000	0.00	0.00	0.00	3.85
4457	4713	0.763223	AGGACTTGAACCCGTGACCT	60.763	55.000	0.00	0.00	0.00	3.85
4458	4714	0.602905	CAGGACTTGAACCCGTGACC	60.603	60.000	0.00	0.00	0.00	4.02
4459	4715	0.602905	CCAGGACTTGAACCCGTGAC	60.603	60.000	0.00	0.00	0.00	3.67
4460	4716	0.761323	TCCAGGACTTGAACCCGTGA	60.761	55.000	0.00	0.00	0.00	4.35
4461	4717	0.107831	TTCCAGGACTTGAACCCGTG	59.892	55.000	0.00	0.00	0.00	4.94
4462	4718	0.841289	TTTCCAGGACTTGAACCCGT	59.159	50.000	0.00	0.00	0.00	5.28
4463	4719	1.235724	GTTTCCAGGACTTGAACCCG	58.764	55.000	0.00	0.00	0.00	5.28
4464	4720	2.230660	CTGTTTCCAGGACTTGAACCC	58.769	52.381	0.00	0.00	34.90	4.11
4465	4721	1.609072	GCTGTTTCCAGGACTTGAACC	59.391	52.381	0.00	0.00	39.22	3.62
4466	4722	1.609072	GGCTGTTTCCAGGACTTGAAC	59.391	52.381	0.00	0.00	39.22	3.18
4467	4723	1.494721	AGGCTGTTTCCAGGACTTGAA	59.505	47.619	0.00	0.00	39.22	2.69
4468	4724	1.072331	GAGGCTGTTTCCAGGACTTGA	59.928	52.381	0.00	0.00	39.22	3.02
4469	4725	1.072965	AGAGGCTGTTTCCAGGACTTG	59.927	52.381	0.00	0.00	39.22	3.16
4470	4726	1.439543	AGAGGCTGTTTCCAGGACTT	58.560	50.000	0.00	0.00	39.22	3.01
4471	4727	1.439543	AAGAGGCTGTTTCCAGGACT	58.560	50.000	0.00	0.00	39.22	3.85
4472	4728	2.038557	TGTAAGAGGCTGTTTCCAGGAC	59.961	50.000	0.90	0.00	39.22	3.85
4473	4729	2.303022	CTGTAAGAGGCTGTTTCCAGGA	59.697	50.000	0.90	0.00	35.89	3.86
4474	4730	2.303022	TCTGTAAGAGGCTGTTTCCAGG	59.697	50.000	17.71	5.83	38.67	4.45
4475	4731	3.685139	TCTGTAAGAGGCTGTTTCCAG	57.315	47.619	0.90	9.48	38.67	3.86
4487	4743	5.250774	AGCCTTTCCCTACATTTCTGTAAGA	59.749	40.000	0.00	0.00	44.68	2.10
4488	4744	5.355350	CAGCCTTTCCCTACATTTCTGTAAG	59.645	44.000	0.00	0.00	37.41	2.34
4489	4745	5.253330	CAGCCTTTCCCTACATTTCTGTAA	58.747	41.667	0.00	0.00	37.41	2.41
4490	4746	4.843728	CAGCCTTTCCCTACATTTCTGTA	58.156	43.478	0.00	0.00	36.79	2.74
4491	4747	3.690460	CAGCCTTTCCCTACATTTCTGT	58.310	45.455	0.00	0.00	39.49	3.41
4492	4748	2.424956	GCAGCCTTTCCCTACATTTCTG	59.575	50.000	0.00	0.00	0.00	3.02
4493	4749	2.728007	GCAGCCTTTCCCTACATTTCT	58.272	47.619	0.00	0.00	0.00	2.52
4494	4750	1.401905	CGCAGCCTTTCCCTACATTTC	59.598	52.381	0.00	0.00	0.00	2.17
4495	4751	1.271926	ACGCAGCCTTTCCCTACATTT	60.272	47.619	0.00	0.00	0.00	2.32
4496	4752	0.328258	ACGCAGCCTTTCCCTACATT	59.672	50.000	0.00	0.00	0.00	2.71
4497	4753	1.134491	GTACGCAGCCTTTCCCTACAT	60.134	52.381	0.00	0.00	0.00	2.29
4498	4754	0.248289	GTACGCAGCCTTTCCCTACA	59.752	55.000	0.00	0.00	0.00	2.74
4499	4755	0.248289	TGTACGCAGCCTTTCCCTAC	59.752	55.000	0.00	0.00	0.00	3.18
4500	4756	0.978151	TTGTACGCAGCCTTTCCCTA	59.022	50.000	0.00	0.00	0.00	3.53
4501	4757	0.328258	ATTGTACGCAGCCTTTCCCT	59.672	50.000	0.00	0.00	0.00	4.20
4502	4758	1.940613	CTATTGTACGCAGCCTTTCCC	59.059	52.381	0.00	0.00	0.00	3.97
4503	4759	2.608090	GTCTATTGTACGCAGCCTTTCC	59.392	50.000	0.00	0.00	0.00	3.13
4504	4760	2.608090	GGTCTATTGTACGCAGCCTTTC	59.392	50.000	0.00	0.00	0.00	2.62
4505	4761	2.629051	GGTCTATTGTACGCAGCCTTT	58.371	47.619	0.00	0.00	0.00	3.11
4506	4762	1.134491	GGGTCTATTGTACGCAGCCTT	60.134	52.381	0.00	0.00	0.00	4.35
4507	4763	0.464452	GGGTCTATTGTACGCAGCCT	59.536	55.000	0.00	0.00	0.00	4.58
4508	4764	0.177141	TGGGTCTATTGTACGCAGCC	59.823	55.000	0.00	0.00	35.18	4.85
4509	4765	2.018542	TTGGGTCTATTGTACGCAGC	57.981	50.000	0.00	0.00	40.36	5.25
4510	4766	3.370978	CACTTTGGGTCTATTGTACGCAG	59.629	47.826	0.00	0.00	40.36	5.18
4511	4767	3.331150	CACTTTGGGTCTATTGTACGCA	58.669	45.455	0.00	0.00	37.94	5.24
4512	4768	2.676342	CCACTTTGGGTCTATTGTACGC	59.324	50.000	0.00	0.00	32.67	4.42
4513	4769	3.934068	ACCACTTTGGGTCTATTGTACG	58.066	45.455	0.00	0.00	43.37	3.67
4523	4779	0.697854	AGGGTCTGACCACTTTGGGT	60.698	55.000	26.94	0.00	43.37	4.51
4524	4780	0.478507	AAGGGTCTGACCACTTTGGG	59.521	55.000	26.94	0.00	43.37	4.12
4525	4781	1.878102	CGAAGGGTCTGACCACTTTGG	60.878	57.143	26.94	17.47	41.02	3.28
4526	4782	1.512926	CGAAGGGTCTGACCACTTTG	58.487	55.000	26.94	23.36	41.02	2.77
4527	4783	0.250338	GCGAAGGGTCTGACCACTTT	60.250	55.000	26.94	17.45	41.02	2.66
4528	4784	1.371558	GCGAAGGGTCTGACCACTT	59.628	57.895	26.94	24.37	41.02	3.16
4529	4785	2.584391	GGCGAAGGGTCTGACCACT	61.584	63.158	26.94	18.28	41.02	4.00
4530	4786	2.047179	GGCGAAGGGTCTGACCAC	60.047	66.667	26.94	16.44	41.02	4.16
4531	4787	3.691342	CGGCGAAGGGTCTGACCA	61.691	66.667	26.94	0.00	41.02	4.02
4532	4788	4.452733	CCGGCGAAGGGTCTGACC	62.453	72.222	18.65	18.65	37.60	4.02
4533	4789	3.379445	TCCGGCGAAGGGTCTGAC	61.379	66.667	9.30	0.00	0.00	3.51
4534	4790	3.379445	GTCCGGCGAAGGGTCTGA	61.379	66.667	9.30	0.00	0.00	3.27
4535	4791	4.452733	GGTCCGGCGAAGGGTCTG	62.453	72.222	9.30	0.00	0.00	3.51
4553	4809	4.819761	TAGCTCCCGCTTGCGCAG	62.820	66.667	11.31	6.32	46.47	5.18
4556	4812	2.202932	ATGTAGCTCCCGCTTGCG	60.203	61.111	8.14	8.14	46.47	4.85
4557	4813	2.828128	GCATGTAGCTCCCGCTTGC	61.828	63.158	0.00	0.00	46.47	4.01
4558	4814	1.450134	TGCATGTAGCTCCCGCTTG	60.450	57.895	0.00	0.00	46.47	4.01
4559	4815	1.450312	GTGCATGTAGCTCCCGCTT	60.450	57.895	0.00	0.00	46.47	4.68
4565	4821	2.897350	GCCCGGTGCATGTAGCTC	60.897	66.667	11.25	0.00	45.94	4.09
4566	4822	3.402681	AGCCCGGTGCATGTAGCT	61.403	61.111	15.92	4.82	45.94	3.32
4567	4823	3.204827	CAGCCCGGTGCATGTAGC	61.205	66.667	15.92	2.56	44.83	3.58
4568	4824	3.204827	GCAGCCCGGTGCATGTAG	61.205	66.667	13.70	0.91	43.41	2.74
4569	4825	4.794648	GGCAGCCCGGTGCATGTA	62.795	66.667	19.47	0.00	45.93	2.29
4592	4848	9.799106	AGATAGAGATGAACTTCCAAAGAAAAA	57.201	29.630	0.00	0.00	0.00	1.94
4593	4849	9.799106	AAGATAGAGATGAACTTCCAAAGAAAA	57.201	29.630	0.00	0.00	0.00	2.29
4594	4850	9.224267	CAAGATAGAGATGAACTTCCAAAGAAA	57.776	33.333	0.00	0.00	0.00	2.52
4595	4851	8.597167	TCAAGATAGAGATGAACTTCCAAAGAA	58.403	33.333	0.00	0.00	0.00	2.52
4596	4852	8.138928	TCAAGATAGAGATGAACTTCCAAAGA	57.861	34.615	0.00	0.00	0.00	2.52
4597	4853	8.828644	CATCAAGATAGAGATGAACTTCCAAAG	58.171	37.037	0.00	0.00	43.28	2.77
4598	4854	7.772292	CCATCAAGATAGAGATGAACTTCCAAA	59.228	37.037	4.12	0.00	43.28	3.28
4599	4855	7.092712	ACCATCAAGATAGAGATGAACTTCCAA	60.093	37.037	4.12	0.00	43.28	3.53
4600	4856	6.385176	ACCATCAAGATAGAGATGAACTTCCA	59.615	38.462	4.12	0.00	43.28	3.53
4684	4940	7.698836	ATGTGAAAACAAGTTAATTGCACTC	57.301	32.000	10.64	0.00	43.15	3.51
4687	4943	8.386606	GTGAAATGTGAAAACAAGTTAATTGCA	58.613	29.630	0.00	0.00	43.15	4.08
4920	5176	3.007074	TGTTTGTACCTATGTCTTGCGGA	59.993	43.478	0.00	0.00	0.00	5.54
5010	5266	6.567050	AGCATGAATATTTCGACAAGCAAAT	58.433	32.000	0.00	0.00	30.98	2.32
5109	5365	5.242795	ACAAAGGCCAGTATCAACTAGTT	57.757	39.130	5.01	1.12	33.48	2.24
5145	5405	5.991606	TCTAATCCGAATTCCAACATAGCAG	59.008	40.000	0.00	0.00	0.00	4.24
5542	5902	1.896220	TTGGTGCTCATGTGAAGACC	58.104	50.000	0.00	2.05	0.00	3.85
5954	6604	4.418392	GACTAAGCCATGCAAAATGTCAG	58.582	43.478	0.00	0.00	0.00	3.51
6319	6969	2.675348	GGTTCTCCAGAAATGAGCTTCG	59.325	50.000	0.00	0.00	35.58	3.79
6503	7157	5.689031	GTGGTACATTCCATAACATGGCCTA	60.689	44.000	3.32	0.00	46.56	3.93
6742	7396	7.147391	TGGCCATTGAGTAGAATTAGGTATTGA	60.147	37.037	0.00	0.00	0.00	2.57
7037	7696	7.580600	CAATATGTGCCGTATACAAGCAATTA	58.419	34.615	16.73	12.30	38.45	1.40
7066	7725	3.674138	CGTTTTTGGATGGGCTGATTGAG	60.674	47.826	0.00	0.00	0.00	3.02
7180	7839	5.049060	TGGATCTTCAACACATTTACCAACG	60.049	40.000	0.00	0.00	0.00	4.10
7187	7846	4.026052	GGGGATGGATCTTCAACACATTT	58.974	43.478	0.00	0.00	0.00	2.32
7197	7856	0.104197	GGAGGGAGGGGATGGATCTT	60.104	60.000	0.00	0.00	0.00	2.40
7198	7857	1.015131	AGGAGGGAGGGGATGGATCT	61.015	60.000	0.00	0.00	0.00	2.75
7199	7858	0.104197	AAGGAGGGAGGGGATGGATC	60.104	60.000	0.00	0.00	0.00	3.36
7200	7859	0.104197	GAAGGAGGGAGGGGATGGAT	60.104	60.000	0.00	0.00	0.00	3.41
7201	7860	1.318380	GAAGGAGGGAGGGGATGGA	59.682	63.158	0.00	0.00	0.00	3.41
7202	7861	2.143419	CGAAGGAGGGAGGGGATGG	61.143	68.421	0.00	0.00	0.00	3.51
7203	7862	0.105658	TACGAAGGAGGGAGGGGATG	60.106	60.000	0.00	0.00	0.00	3.51
7204	7863	0.868186	ATACGAAGGAGGGAGGGGAT	59.132	55.000	0.00	0.00	0.00	3.85
7205	7864	0.187851	GATACGAAGGAGGGAGGGGA	59.812	60.000	0.00	0.00	0.00	4.81
7206	7865	0.188834	AGATACGAAGGAGGGAGGGG	59.811	60.000	0.00	0.00	0.00	4.79
7207	7866	2.973983	TAGATACGAAGGAGGGAGGG	57.026	55.000	0.00	0.00	0.00	4.30
7208	7867	4.035612	TGATAGATACGAAGGAGGGAGG	57.964	50.000	0.00	0.00	0.00	4.30
7209	7868	7.704578	TTAATGATAGATACGAAGGAGGGAG	57.295	40.000	0.00	0.00	0.00	4.30
7210	7869	8.666129	ATTTAATGATAGATACGAAGGAGGGA	57.334	34.615	0.00	0.00	0.00	4.20
7323	8021	6.274436	TGATATTGGAATTAGCATCCCCTACA	59.726	38.462	0.00	0.00	36.04	2.74
7659	8358	9.554395	TCTGTGTCATTAAATGTAGACTCAAAA	57.446	29.630	0.00	0.00	35.09	2.44
7660	8359	9.725019	ATCTGTGTCATTAAATGTAGACTCAAA	57.275	29.630	0.00	0.00	35.09	2.69
7688	8388	8.467963	TGCTCCACATGATCATAAAATTATGT	57.532	30.769	8.15	0.00	40.97	2.29
7705	8405	4.350368	TCTTCAATAACACTGCTCCACA	57.650	40.909	0.00	0.00	0.00	4.17
7732	8432	9.559732	ACAGAATACTATGCATAAAATAGCACA	57.440	29.630	8.00	0.00	44.49	4.57
7850	8555	5.597813	ACTAGAAAACTCATGCTTTCACG	57.402	39.130	13.70	8.46	34.60	4.35
7936	8641	8.831550	AGTTCACTGTCTTTTATCAACTTTCTC	58.168	33.333	0.00	0.00	0.00	2.87
7937	8642	8.738645	AGTTCACTGTCTTTTATCAACTTTCT	57.261	30.769	0.00	0.00	0.00	2.52
7938	8643	9.439537	GAAGTTCACTGTCTTTTATCAACTTTC	57.560	33.333	0.00	0.00	33.94	2.62
7941	8646	7.227512	CAGGAAGTTCACTGTCTTTTATCAACT	59.772	37.037	5.01	0.00	0.00	3.16
7942	8647	7.226720	TCAGGAAGTTCACTGTCTTTTATCAAC	59.773	37.037	16.26	0.00	36.17	3.18
7944	8649	6.826668	TCAGGAAGTTCACTGTCTTTTATCA	58.173	36.000	16.26	0.00	36.17	2.15
7946	8651	7.255277	GCTTTCAGGAAGTTCACTGTCTTTTAT	60.255	37.037	16.26	0.00	37.69	1.40
7965	8670	5.927689	TCTTTACCATTGCAAATGCTTTCAG	59.072	36.000	1.71	0.00	42.66	3.02
8088	8794	8.552034	CAGGTGATATAGCAGCTTAAACTAAAC	58.448	37.037	19.45	0.00	43.51	2.01
8322	9028	6.558775	TGGATATTGCTATTACTGGAGAAGGT	59.441	38.462	0.00	0.00	0.00	3.50
8420	9126	7.535258	GGCGCAGTTGTCTATATCAAAATAATG	59.465	37.037	10.83	0.00	0.00	1.90
8421	9127	7.571244	CGGCGCAGTTGTCTATATCAAAATAAT	60.571	37.037	10.83	0.00	0.00	1.28
8424	9130	4.024893	CGGCGCAGTTGTCTATATCAAAAT	60.025	41.667	10.83	0.00	0.00	1.82
8574	9280	0.460459	GCGAAGTAGTCTTGCTCCCC	60.460	60.000	0.00	0.00	33.64	4.81
8648	9354	3.432252	CAGTTACAAGTACTGGGCTTTCG	59.568	47.826	1.45	0.00	39.42	3.46
8659	9365	5.222079	TCAACTGGATGCAGTTACAAGTA	57.778	39.130	29.18	10.37	42.87	2.24
8686	9392	0.255318	GGACGGAGGGAGTACTCTGA	59.745	60.000	21.88	0.00	44.83	3.27
8694	9400	1.838077	ACTTATTTGGGACGGAGGGAG	59.162	52.381	0.00	0.00	0.00	4.30
8695	9401	1.557832	CACTTATTTGGGACGGAGGGA	59.442	52.381	0.00	0.00	0.00	4.20
8697	9403	2.236395	AGACACTTATTTGGGACGGAGG	59.764	50.000	0.00	0.00	0.00	4.30
8698	9404	3.056107	TGAGACACTTATTTGGGACGGAG	60.056	47.826	0.00	0.00	0.00	4.63
8700	9406	3.328382	TGAGACACTTATTTGGGACGG	57.672	47.619	0.00	0.00	0.00	4.79
8701	9407	5.880054	AATTGAGACACTTATTTGGGACG	57.120	39.130	0.00	0.00	0.00	4.79
8737	9443	9.269453	GTCTCAACCTTAGTACAACTTTGTATT	57.731	33.333	5.16	4.04	44.59	1.89
8738	9444	8.426489	TGTCTCAACCTTAGTACAACTTTGTAT	58.574	33.333	5.16	0.00	44.59	2.29
8739	9445	7.707893	GTGTCTCAACCTTAGTACAACTTTGTA	59.292	37.037	0.00	0.00	42.35	2.41
8741	9447	6.761714	AGTGTCTCAACCTTAGTACAACTTTG	59.238	38.462	0.00	0.00	0.00	2.77
8742	9448	6.885922	AGTGTCTCAACCTTAGTACAACTTT	58.114	36.000	0.00	0.00	0.00	2.66
8743	9449	6.481434	AGTGTCTCAACCTTAGTACAACTT	57.519	37.500	0.00	0.00	0.00	2.66
8744	9450	6.481434	AAGTGTCTCAACCTTAGTACAACT	57.519	37.500	0.00	0.00	0.00	3.16
8745	9451	8.828688	AATAAGTGTCTCAACCTTAGTACAAC	57.171	34.615	0.00	0.00	0.00	3.32
8747	9453	9.268268	CAAAATAAGTGTCTCAACCTTAGTACA	57.732	33.333	0.00	0.00	0.00	2.90
8748	9454	8.718734	CCAAAATAAGTGTCTCAACCTTAGTAC	58.281	37.037	0.00	0.00	0.00	2.73
8749	9455	7.881232	CCCAAAATAAGTGTCTCAACCTTAGTA	59.119	37.037	0.00	0.00	0.00	1.82
8750	9456	6.715264	CCCAAAATAAGTGTCTCAACCTTAGT	59.285	38.462	0.00	0.00	0.00	2.24
8752	9458	6.713450	GTCCCAAAATAAGTGTCTCAACCTTA	59.287	38.462	0.00	0.00	0.00	2.69
8755	9461	4.083484	CGTCCCAAAATAAGTGTCTCAACC	60.083	45.833	0.00	0.00	0.00	3.77
8756	9462	4.083484	CCGTCCCAAAATAAGTGTCTCAAC	60.083	45.833	0.00	0.00	0.00	3.18
8757	9463	4.069304	CCGTCCCAAAATAAGTGTCTCAA	58.931	43.478	0.00	0.00	0.00	3.02
8758	9464	3.325425	TCCGTCCCAAAATAAGTGTCTCA	59.675	43.478	0.00	0.00	0.00	3.27
8759	9465	3.934068	TCCGTCCCAAAATAAGTGTCTC	58.066	45.455	0.00	0.00	0.00	3.36
8760	9466	4.569719	ATCCGTCCCAAAATAAGTGTCT	57.430	40.909	0.00	0.00	0.00	3.41
8761	9467	6.746745	TTTATCCGTCCCAAAATAAGTGTC	57.253	37.500	0.00	0.00	0.00	3.67
8762	9468	6.943718	TCTTTTATCCGTCCCAAAATAAGTGT	59.056	34.615	0.00	0.00	0.00	3.55
8763	9469	7.385778	TCTTTTATCCGTCCCAAAATAAGTG	57.614	36.000	0.00	0.00	0.00	3.16
8764	9470	9.338622	CTATCTTTTATCCGTCCCAAAATAAGT	57.661	33.333	0.00	0.00	0.00	2.24
8766	9472	7.722285	CCCTATCTTTTATCCGTCCCAAAATAA	59.278	37.037	0.00	0.00	0.00	1.40
8768	9474	6.068670	CCCTATCTTTTATCCGTCCCAAAAT	58.931	40.000	0.00	0.00	0.00	1.82
8769	9475	5.192121	TCCCTATCTTTTATCCGTCCCAAAA	59.808	40.000	0.00	0.00	0.00	2.44
8771	9477	4.300345	TCCCTATCTTTTATCCGTCCCAA	58.700	43.478	0.00	0.00	0.00	4.12
8773	9479	4.968971	TTCCCTATCTTTTATCCGTCCC	57.031	45.455	0.00	0.00	0.00	4.46
8774	9480	4.755629	GCTTTCCCTATCTTTTATCCGTCC	59.244	45.833	0.00	0.00	0.00	4.79
8775	9481	5.467063	CAGCTTTCCCTATCTTTTATCCGTC	59.533	44.000	0.00	0.00	0.00	4.79
8776	9482	5.368989	CAGCTTTCCCTATCTTTTATCCGT	58.631	41.667	0.00	0.00	0.00	4.69
8777	9483	4.214332	GCAGCTTTCCCTATCTTTTATCCG	59.786	45.833	0.00	0.00	0.00	4.18
8780	9486	6.428159	CGTATGCAGCTTTCCCTATCTTTTAT	59.572	38.462	0.00	0.00	0.00	1.40
8781	9487	5.758296	CGTATGCAGCTTTCCCTATCTTTTA	59.242	40.000	0.00	0.00	0.00	1.52
8803	9509	3.179830	GACGACATAACTGCAAGATCGT	58.820	45.455	7.54	7.54	43.42	3.73
8829	9535	6.627395	TCCTGTTATCGCAAAAGAAGAAAA	57.373	33.333	0.00	0.00	0.00	2.29
8928	9634	1.889829	CCTCCTCCGGCTATAAGTGAG	59.110	57.143	0.00	0.00	0.00	3.51
8952	9658	3.979739	CCCCTAGCTAGGCGCGTC	61.980	72.222	31.33	0.21	45.59	5.19
9188	9942	1.222936	CTACCAGGCCCAGCTCTTG	59.777	63.158	0.00	0.00	0.00	3.02
9248	10099	2.832129	GGAAGAGGTGTAGACATGACCA	59.168	50.000	0.00	0.00	31.61	4.02
9345	10203	3.838271	GCGGCGGAGGACATCAGA	61.838	66.667	9.78	0.00	0.00	3.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.