Multiple sequence alignment - TraesCS2D01G267900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G267900 chr2D 100.000 5801 0 0 1 5801 327759620 327753820 0.000000e+00 10713.0
1 TraesCS2D01G267900 chr2B 95.560 2703 77 22 3065 5737 397009116 397006427 0.000000e+00 4287.0
2 TraesCS2D01G267900 chr2B 89.854 1232 90 15 1762 2972 397010581 397009364 0.000000e+00 1550.0
3 TraesCS2D01G267900 chr2B 97.209 824 22 1 943 1765 397011525 397010702 0.000000e+00 1393.0
4 TraesCS2D01G267900 chr2B 84.941 591 55 17 366 943 397012139 397011570 8.440000e-158 568.0
5 TraesCS2D01G267900 chr2B 81.936 692 102 18 2330 3005 573807080 573807764 1.090000e-156 564.0
6 TraesCS2D01G267900 chr2B 88.918 379 34 5 1 372 397012580 397012203 1.470000e-125 460.0
7 TraesCS2D01G267900 chr2B 82.069 145 17 3 756 891 140234043 140233899 1.320000e-21 115.0
8 TraesCS2D01G267900 chr2A 91.609 2038 122 18 943 2932 433369976 433367940 0.000000e+00 2771.0
9 TraesCS2D01G267900 chr2A 95.675 1711 54 12 3976 5668 433361655 433359947 0.000000e+00 2732.0
10 TraesCS2D01G267900 chr2A 95.791 974 37 4 3002 3973 433362875 433361904 0.000000e+00 1568.0
11 TraesCS2D01G267900 chr2A 92.916 367 20 3 1 361 433371030 433370664 3.980000e-146 529.0
12 TraesCS2D01G267900 chr2A 83.811 593 57 22 366 943 433370589 433370021 1.430000e-145 527.0
13 TraesCS2D01G267900 chr2A 85.354 396 47 6 366 751 200177233 200177627 3.260000e-107 399.0
14 TraesCS2D01G267900 chr2A 82.759 145 16 3 756 891 62393227 62393083 2.840000e-23 121.0
15 TraesCS2D01G267900 chr2A 85.366 82 2 3 5664 5737 433359916 433359837 6.230000e-10 76.8
16 TraesCS2D01G267900 chr4D 84.683 679 72 14 1680 2332 105893806 105894478 0.000000e+00 649.0
17 TraesCS2D01G267900 chr4D 95.890 73 1 2 5731 5801 22515718 22515790 3.670000e-22 117.0
18 TraesCS2D01G267900 chr4D 98.485 66 0 1 5731 5795 484886044 484886109 1.320000e-21 115.0
19 TraesCS2D01G267900 chr4D 91.250 80 5 2 5724 5801 20141639 20141560 2.210000e-19 108.0
20 TraesCS2D01G267900 chr4D 83.529 85 10 4 3522 3606 60170810 60170890 6.230000e-10 76.8
21 TraesCS2D01G267900 chr4D 87.692 65 8 0 3542 3606 60175181 60175117 6.230000e-10 76.8
22 TraesCS2D01G267900 chr4D 93.750 48 1 2 3542 3588 112722684 112722638 2.900000e-08 71.3
23 TraesCS2D01G267900 chr5B 83.876 707 84 9 2335 3012 508684903 508684198 0.000000e+00 647.0
24 TraesCS2D01G267900 chr5B 83.832 501 55 14 1852 2332 508685452 508684958 2.460000e-123 453.0
25 TraesCS2D01G267900 chr5B 85.786 401 41 10 366 752 67535167 67535565 1.500000e-110 411.0
26 TraesCS2D01G267900 chr5B 83.916 143 14 3 755 888 68828069 68828211 1.700000e-25 128.0
27 TraesCS2D01G267900 chr5B 81.208 149 17 5 750 888 592863295 592863442 6.150000e-20 110.0
28 TraesCS2D01G267900 chr5D 87.500 568 60 6 1682 2241 397023115 397023679 0.000000e+00 645.0
29 TraesCS2D01G267900 chr5D 83.639 709 82 15 2333 3011 421996571 421995867 2.280000e-178 636.0
30 TraesCS2D01G267900 chr5D 89.182 379 32 6 1 370 373778297 373777919 1.140000e-126 464.0
31 TraesCS2D01G267900 chr5D 88.298 376 38 3 1 370 497834720 497835095 4.120000e-121 446.0
32 TraesCS2D01G267900 chr5D 83.651 367 52 7 366 728 340537369 340537007 7.200000e-89 339.0
33 TraesCS2D01G267900 chr5D 88.172 93 5 6 5713 5801 360884049 360884139 7.950000e-19 106.0
34 TraesCS2D01G267900 chr1D 83.788 697 90 14 2330 3012 334245811 334246498 1.760000e-179 640.0
35 TraesCS2D01G267900 chr1D 86.726 565 68 6 1680 2241 12072479 12073039 6.380000e-174 621.0
36 TraesCS2D01G267900 chr1D 88.859 377 35 4 1 370 60313466 60313842 1.910000e-124 457.0
37 TraesCS2D01G267900 chr1D 78.453 724 97 31 2337 3009 31406111 31406826 8.990000e-113 418.0
38 TraesCS2D01G267900 chr1D 84.826 402 41 15 366 751 60313909 60314306 2.540000e-103 387.0
39 TraesCS2D01G267900 chr1D 91.111 90 8 0 2243 2332 11787640 11787729 7.890000e-24 122.0
40 TraesCS2D01G267900 chr1D 94.521 73 2 2 5731 5801 364729641 364729569 1.710000e-20 111.0
41 TraesCS2D01G267900 chr1D 94.366 71 2 2 5733 5801 1250120 1250050 2.210000e-19 108.0
42 TraesCS2D01G267900 chr1D 93.151 73 3 2 5731 5801 480672594 480672522 7.950000e-19 106.0
43 TraesCS2D01G267900 chr1D 83.544 79 9 4 3536 3612 52325784 52325860 2.900000e-08 71.3
44 TraesCS2D01G267900 chr1D 85.075 67 6 4 3522 3588 433250065 433250127 1.350000e-06 65.8
45 TraesCS2D01G267900 chr7A 83.947 679 79 17 1681 2332 384513028 384512353 1.780000e-174 623.0
46 TraesCS2D01G267900 chr7A 88.267 375 36 5 3 370 182324139 182323766 5.330000e-120 442.0
47 TraesCS2D01G267900 chr7A 80.150 267 37 12 2742 3006 529444847 529445099 9.930000e-43 185.0
48 TraesCS2D01G267900 chr7A 82.667 75 11 2 3532 3606 677062125 677062053 1.350000e-06 65.8
49 TraesCS2D01G267900 chr7D 83.735 664 91 12 1682 2332 171013310 171012651 3.840000e-171 612.0
50 TraesCS2D01G267900 chr7D 86.567 67 5 4 3522 3588 203039696 203039758 2.900000e-08 71.3
51 TraesCS2D01G267900 chr3A 83.187 684 86 17 2333 3012 66796623 66797281 2.990000e-167 599.0
52 TraesCS2D01G267900 chr3A 83.111 675 86 15 1683 2332 542222690 542222019 1.800000e-164 590.0
53 TraesCS2D01G267900 chr3A 88.997 309 34 0 366 674 45772972 45773280 3.280000e-102 383.0
54 TraesCS2D01G267900 chr3A 87.774 319 37 2 366 684 510307926 510308242 7.100000e-99 372.0
55 TraesCS2D01G267900 chr3A 90.291 103 10 0 2743 2845 651961354 651961456 1.010000e-27 135.0
56 TraesCS2D01G267900 chr3A 86.364 66 9 0 3542 3607 178469601 178469536 8.060000e-09 73.1
57 TraesCS2D01G267900 chr4B 85.589 569 68 8 1682 2241 139395843 139396406 8.380000e-163 584.0
58 TraesCS2D01G267900 chr4B 74.831 445 73 22 2600 3009 653403743 653403303 1.290000e-36 165.0
59 TraesCS2D01G267900 chr4B 95.890 73 1 2 5731 5801 416644107 416644035 3.670000e-22 117.0
60 TraesCS2D01G267900 chr4B 95.833 72 2 1 5731 5801 85641242 85641171 1.320000e-21 115.0
61 TraesCS2D01G267900 chr4B 93.421 76 3 2 5728 5801 553536910 553536835 1.710000e-20 111.0
62 TraesCS2D01G267900 chr4B 94.521 73 2 2 5731 5801 579399148 579399076 1.710000e-20 111.0
63 TraesCS2D01G267900 chr4B 92.405 79 3 3 5725 5801 632698004 632698081 6.150000e-20 110.0
64 TraesCS2D01G267900 chr4B 86.154 65 9 0 3542 3606 454171803 454171739 2.900000e-08 71.3
65 TraesCS2D01G267900 chr5A 86.640 509 67 1 2333 2841 535532307 535531800 3.920000e-156 562.0
66 TraesCS2D01G267900 chr5A 82.857 140 15 3 756 886 180140603 180140742 3.670000e-22 117.0
67 TraesCS2D01G267900 chr5A 82.069 145 18 2 755 891 640409764 640409620 3.670000e-22 117.0
68 TraesCS2D01G267900 chr5A 94.667 75 2 2 5729 5801 590529776 590529702 1.320000e-21 115.0
69 TraesCS2D01G267900 chr5A 92.405 79 3 3 5718 5795 672806760 672806684 6.150000e-20 110.0
70 TraesCS2D01G267900 chr5A 90.244 82 6 2 5712 5792 445202816 445202896 7.950000e-19 106.0
71 TraesCS2D01G267900 chr5A 88.406 69 4 3 3532 3598 337935949 337936015 4.820000e-11 80.5
72 TraesCS2D01G267900 chr5A 86.364 66 9 0 3542 3607 632277775 632277710 8.060000e-09 73.1
73 TraesCS2D01G267900 chr5A 86.154 65 9 0 3542 3606 493190132 493190068 2.900000e-08 71.3
74 TraesCS2D01G267900 chr5A 86.364 66 7 2 3542 3605 607718541 607718476 2.900000e-08 71.3
75 TraesCS2D01G267900 chr3D 82.258 682 84 14 2330 2993 516853007 516853669 6.570000e-154 555.0
76 TraesCS2D01G267900 chr3D 89.474 380 32 5 1 372 171328822 171328443 1.890000e-129 473.0
77 TraesCS2D01G267900 chr3D 88.329 377 37 4 1 370 458326348 458325972 4.120000e-121 446.0
78 TraesCS2D01G267900 chr3D 73.603 716 114 47 1680 2332 606138347 606137644 7.620000e-49 206.0
79 TraesCS2D01G267900 chr3D 95.946 74 1 2 5730 5801 299692639 299692566 1.020000e-22 119.0
80 TraesCS2D01G267900 chr3D 94.521 73 2 2 5731 5801 25580731 25580659 1.710000e-20 111.0
81 TraesCS2D01G267900 chr6B 89.544 373 32 4 1 366 501776492 501776120 3.170000e-127 466.0
82 TraesCS2D01G267900 chr6B 79.037 706 99 23 2330 3009 697730823 697731505 6.900000e-119 438.0
83 TraesCS2D01G267900 chr6B 81.379 145 18 3 756 891 680821330 680821186 6.150000e-20 110.0
84 TraesCS2D01G267900 chr6B 88.060 67 4 3 3522 3588 26089684 26089746 6.230000e-10 76.8
85 TraesCS2D01G267900 chr6B 86.364 66 9 0 3542 3607 640626903 640626838 8.060000e-09 73.1
86 TraesCS2D01G267900 chr6B 82.051 78 10 3 817 891 16599867 16599943 4.850000e-06 63.9
87 TraesCS2D01G267900 chr6A 79.424 695 95 24 2331 3009 143448541 143447879 1.150000e-121 448.0
88 TraesCS2D01G267900 chr6A 84.158 404 47 5 366 753 459072179 459072581 5.490000e-100 375.0
89 TraesCS2D01G267900 chr6A 84.314 102 12 4 5703 5801 610190934 610191034 4.780000e-16 97.1
90 TraesCS2D01G267900 chr6A 91.489 47 4 0 3542 3588 214047042 214046996 1.350000e-06 65.8
91 TraesCS2D01G267900 chr6A 85.075 67 6 4 3522 3588 611808863 611808925 1.350000e-06 65.8
92 TraesCS2D01G267900 chr6D 88.618 369 36 3 1 363 15861523 15861155 1.480000e-120 444.0
93 TraesCS2D01G267900 chr6D 76.145 415 70 18 2621 3009 322833118 322833529 2.130000e-44 191.0
94 TraesCS2D01G267900 chr6D 90.244 82 5 3 5722 5801 82213361 82213281 2.860000e-18 104.0
95 TraesCS2D01G267900 chr6D 88.060 67 4 3 3522 3588 27458855 27458793 6.230000e-10 76.8
96 TraesCS2D01G267900 chr6D 86.567 67 5 3 3522 3588 2423036 2423098 2.900000e-08 71.3
97 TraesCS2D01G267900 chr6D 86.567 67 5 4 3522 3588 439807102 439807164 2.900000e-08 71.3
98 TraesCS2D01G267900 chr6D 89.655 58 2 4 3532 3588 466993317 466993263 2.900000e-08 71.3
99 TraesCS2D01G267900 chr6D 85.294 68 4 6 3522 3588 444708414 444708476 1.350000e-06 65.8
100 TraesCS2D01G267900 chr1B 90.847 295 23 3 366 658 619632865 619633157 5.450000e-105 392.0
101 TraesCS2D01G267900 chr1B 82.192 146 16 4 755 891 608959425 608959281 3.670000e-22 117.0
102 TraesCS2D01G267900 chr3B 83.627 397 50 12 366 751 561045552 561045160 5.530000e-95 359.0
103 TraesCS2D01G267900 chr3B 76.575 508 80 20 2529 3009 655019135 655019630 5.810000e-60 243.0
104 TraesCS2D01G267900 chr3B 93.590 78 2 3 5727 5801 816706059 816705982 4.750000e-21 113.0
105 TraesCS2D01G267900 chr1A 76.845 691 118 26 2333 3009 5098475 5097813 9.250000e-93 351.0
106 TraesCS2D01G267900 chr1A 72.958 710 122 43 1679 2332 50559652 50558957 3.570000e-42 183.0
107 TraesCS2D01G267900 chr1A 91.358 81 5 2 5723 5801 558299166 558299246 6.150000e-20 110.0
108 TraesCS2D01G267900 chr1A 84.848 66 9 1 3542 3607 545477494 545477558 1.350000e-06 65.8
109 TraesCS2D01G267900 chr1A 88.679 53 5 1 3542 3593 262834200 262834252 4.850000e-06 63.9
110 TraesCS2D01G267900 chr4A 81.959 388 67 3 366 751 476177945 476178331 5.610000e-85 326.0
111 TraesCS2D01G267900 chr4A 88.172 93 9 2 5711 5801 735069947 735070039 6.150000e-20 110.0
112 TraesCS2D01G267900 chr4A 80.142 141 19 6 755 886 426335410 426335270 4.780000e-16 97.1
113 TraesCS2D01G267900 chrUn 75.140 712 103 46 1680 2332 95589951 95590647 3.450000e-67 267.0
114 TraesCS2D01G267900 chrUn 93.243 74 3 2 5730 5801 202168831 202168758 2.210000e-19 108.0
115 TraesCS2D01G267900 chrUn 93.243 74 3 2 5730 5801 202190016 202189943 2.210000e-19 108.0
116 TraesCS2D01G267900 chrUn 93.243 74 3 2 5730 5801 210625706 210625779 2.210000e-19 108.0
117 TraesCS2D01G267900 chrUn 92.105 76 4 2 5728 5801 38594548 38594623 7.950000e-19 106.0
118 TraesCS2D01G267900 chrUn 92.105 76 4 2 5728 5801 38615051 38615126 7.950000e-19 106.0
119 TraesCS2D01G267900 chrUn 92.105 76 4 2 5728 5801 258180427 258180502 7.950000e-19 106.0
120 TraesCS2D01G267900 chrUn 93.151 73 3 2 5731 5801 331152358 331152430 7.950000e-19 106.0
121 TraesCS2D01G267900 chrUn 92.105 76 4 2 5728 5801 451986683 451986758 7.950000e-19 106.0
122 TraesCS2D01G267900 chrUn 95.455 66 2 1 5731 5795 329701216 329701281 2.860000e-18 104.0
123 TraesCS2D01G267900 chrUn 92.958 71 4 1 5726 5795 293209127 293209197 1.030000e-17 102.0
124 TraesCS2D01G267900 chrUn 89.583 48 4 1 3542 3589 154589225 154589179 6.280000e-05 60.2
125 TraesCS2D01G267900 chrUn 86.792 53 5 2 3542 3593 154620023 154619972 2.260000e-04 58.4
126 TraesCS2D01G267900 chr7B 82.877 146 16 3 755 891 632936613 632936468 7.890000e-24 122.0
127 TraesCS2D01G267900 chr7B 94.595 74 2 2 5730 5801 384361253 384361180 4.750000e-21 113.0
128 TraesCS2D01G267900 chr7B 89.655 87 4 5 5718 5801 637304289 637304205 7.950000e-19 106.0
129 TraesCS2D01G267900 chr7B 86.567 67 5 4 3522 3588 65824553 65824615 2.900000e-08 71.3
130 TraesCS2D01G267900 chr7B 76.351 148 25 6 750 888 303720219 303720365 2.900000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G267900 chr2D 327753820 327759620 5800 True 10713.000000 10713 100.000000 1 5801 1 chr2D.!!$R1 5800
1 TraesCS2D01G267900 chr2B 397006427 397012580 6153 True 1651.600000 4287 91.296400 1 5737 5 chr2B.!!$R2 5736
2 TraesCS2D01G267900 chr2B 573807080 573807764 684 False 564.000000 564 81.936000 2330 3005 1 chr2B.!!$F1 675
3 TraesCS2D01G267900 chr2A 433359837 433362875 3038 True 1458.933333 2732 92.277333 3002 5737 3 chr2A.!!$R2 2735
4 TraesCS2D01G267900 chr2A 433367940 433371030 3090 True 1275.666667 2771 89.445333 1 2932 3 chr2A.!!$R3 2931
5 TraesCS2D01G267900 chr4D 105893806 105894478 672 False 649.000000 649 84.683000 1680 2332 1 chr4D.!!$F3 652
6 TraesCS2D01G267900 chr5B 508684198 508685452 1254 True 550.000000 647 83.854000 1852 3012 2 chr5B.!!$R1 1160
7 TraesCS2D01G267900 chr5D 397023115 397023679 564 False 645.000000 645 87.500000 1682 2241 1 chr5D.!!$F2 559
8 TraesCS2D01G267900 chr5D 421995867 421996571 704 True 636.000000 636 83.639000 2333 3011 1 chr5D.!!$R3 678
9 TraesCS2D01G267900 chr1D 334245811 334246498 687 False 640.000000 640 83.788000 2330 3012 1 chr1D.!!$F5 682
10 TraesCS2D01G267900 chr1D 12072479 12073039 560 False 621.000000 621 86.726000 1680 2241 1 chr1D.!!$F2 561
11 TraesCS2D01G267900 chr1D 60313466 60314306 840 False 422.000000 457 86.842500 1 751 2 chr1D.!!$F7 750
12 TraesCS2D01G267900 chr1D 31406111 31406826 715 False 418.000000 418 78.453000 2337 3009 1 chr1D.!!$F3 672
13 TraesCS2D01G267900 chr7A 384512353 384513028 675 True 623.000000 623 83.947000 1681 2332 1 chr7A.!!$R2 651
14 TraesCS2D01G267900 chr7D 171012651 171013310 659 True 612.000000 612 83.735000 1682 2332 1 chr7D.!!$R1 650
15 TraesCS2D01G267900 chr3A 66796623 66797281 658 False 599.000000 599 83.187000 2333 3012 1 chr3A.!!$F2 679
16 TraesCS2D01G267900 chr3A 542222019 542222690 671 True 590.000000 590 83.111000 1683 2332 1 chr3A.!!$R2 649
17 TraesCS2D01G267900 chr4B 139395843 139396406 563 False 584.000000 584 85.589000 1682 2241 1 chr4B.!!$F1 559
18 TraesCS2D01G267900 chr5A 535531800 535532307 507 True 562.000000 562 86.640000 2333 2841 1 chr5A.!!$R2 508
19 TraesCS2D01G267900 chr3D 516853007 516853669 662 False 555.000000 555 82.258000 2330 2993 1 chr3D.!!$F1 663
20 TraesCS2D01G267900 chr3D 606137644 606138347 703 True 206.000000 206 73.603000 1680 2332 1 chr3D.!!$R5 652
21 TraesCS2D01G267900 chr6B 697730823 697731505 682 False 438.000000 438 79.037000 2330 3009 1 chr6B.!!$F3 679
22 TraesCS2D01G267900 chr6A 143447879 143448541 662 True 448.000000 448 79.424000 2331 3009 1 chr6A.!!$R1 678
23 TraesCS2D01G267900 chr1A 5097813 5098475 662 True 351.000000 351 76.845000 2333 3009 1 chr1A.!!$R1 676
24 TraesCS2D01G267900 chrUn 95589951 95590647 696 False 267.000000 267 75.140000 1680 2332 1 chrUn.!!$F3 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 810 0.179009 ATTCATGGACGGATGCAGGG 60.179 55.0 0.0 0.0 0.00 4.45 F
2241 2552 0.111253 AAGGAGGGAGCAACACAAGG 59.889 55.0 0.0 0.0 0.00 3.61 F
2685 3081 0.886490 CTTCACCTGCTGCGACCTTT 60.886 55.0 0.0 0.0 0.00 3.11 F
3397 4041 0.178967 TTTCTGATGGGCAGGCACAA 60.179 50.0 0.0 0.0 44.98 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2347 2727 0.678366 TGCACAAGTTGTCGGTTGGT 60.678 50.000 5.27 0.0 0.00 3.67 R
3377 4021 0.178967 TGTGCCTGCCCATCAGAAAA 60.179 50.000 0.00 0.0 45.72 2.29 R
3973 4617 1.341531 CAGGTCCGAGTGAGTCAAACT 59.658 52.381 0.00 0.0 0.00 2.66 R
5237 6154 0.973632 ACAATAGGTCCACACTGCGA 59.026 50.000 0.00 0.0 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.334946 CCACATCCGGCAGGTGTTG 61.335 63.158 15.62 2.43 39.05 3.33
33 34 2.350895 CATCCGGCAGGTGTTGGA 59.649 61.111 1.81 0.00 39.05 3.53
101 105 1.751924 GAAGGATGGTGAGCTACTCGT 59.248 52.381 0.00 0.00 32.35 4.18
142 149 4.530857 GCGTGGCTGGCCGTATCT 62.531 66.667 7.14 0.00 39.42 1.98
164 172 1.349026 CGGATTCATAGGCAGGACCAT 59.651 52.381 0.00 0.00 43.14 3.55
232 240 1.375853 GCACATTGCGCCCTATGACA 61.376 55.000 17.66 0.00 31.71 3.58
279 287 0.179181 GGTCGTTGTCGTATCGCTGA 60.179 55.000 0.00 0.00 38.33 4.26
406 485 0.249699 CGTGCTGTACCACAGGTCAA 60.250 55.000 8.31 0.00 46.01 3.18
453 532 0.254178 GCTGGATGAAGCTGAAGGGA 59.746 55.000 0.00 0.00 40.20 4.20
499 578 3.443976 CGTTCCTGAAAAACTTGTTGGG 58.556 45.455 0.00 0.00 0.00 4.12
573 652 6.095160 TGCATGCTATGTGTGAATGATTTGTA 59.905 34.615 20.33 0.00 0.00 2.41
604 683 6.439599 ACTATCCGAACTTAGATGAATGTCG 58.560 40.000 0.00 0.00 0.00 4.35
642 721 6.806388 ATTTCGTCCGGTTAGTTAAAATGT 57.194 33.333 0.00 0.00 0.00 2.71
653 732 9.680315 CGGTTAGTTAAAATGTGGTTTGAAATA 57.320 29.630 0.00 0.00 0.00 1.40
677 756 4.054780 TGGTAATAGCGTTGGATGACTC 57.945 45.455 0.00 0.00 0.00 3.36
678 757 3.704566 TGGTAATAGCGTTGGATGACTCT 59.295 43.478 0.00 0.00 0.00 3.24
703 794 1.112113 GCGGACTGGTCTCCTATTCA 58.888 55.000 0.67 0.00 0.00 2.57
715 807 2.037641 CTCCTATTCATGGACGGATGCA 59.962 50.000 0.00 0.00 0.00 3.96
718 810 0.179009 ATTCATGGACGGATGCAGGG 60.179 55.000 0.00 0.00 0.00 4.45
753 845 0.733150 GCCGTTCAAGATGCCCTAAC 59.267 55.000 0.00 0.00 0.00 2.34
779 871 5.450412 GCCAATTCTTTTCGCCATGATTCTA 60.450 40.000 0.00 0.00 0.00 2.10
807 899 3.012518 CTGATTCTGGAAAACTGCCGAT 58.987 45.455 0.00 0.00 0.00 4.18
837 929 2.733956 TGCCCACAGAATTAACCATCC 58.266 47.619 0.00 0.00 0.00 3.51
962 1100 2.288518 ACGCAGTCTTCTCTTCTTCACC 60.289 50.000 0.00 0.00 29.74 4.02
1456 1594 1.913762 CAGGGGAACGTGGAGAGGT 60.914 63.158 0.00 0.00 42.41 3.85
1512 1650 4.503123 CCGCATCTACCATTCATTCAGGTA 60.503 45.833 0.00 0.00 36.87 3.08
1521 1659 0.254462 TCATTCAGGTAATGGCCGCA 59.746 50.000 0.00 0.00 44.42 5.69
1567 1705 2.367894 TCATTTTTGGCATGGCTGTTGA 59.632 40.909 21.08 12.62 0.00 3.18
2179 2490 1.283613 TCCACCGCTAAAACCATCCAT 59.716 47.619 0.00 0.00 0.00 3.41
2196 2507 0.890683 CATTGGTCCCTTGAGCCAAC 59.109 55.000 0.00 0.00 43.93 3.77
2241 2552 0.111253 AAGGAGGGAGCAACACAAGG 59.889 55.000 0.00 0.00 0.00 3.61
2252 2580 2.349817 GCAACACAAGGTCAACTGATCG 60.350 50.000 0.00 0.00 0.00 3.69
2486 2871 1.451927 CTGTGTGTGCCACCACTGT 60.452 57.895 14.64 0.00 43.85 3.55
2487 2872 1.439353 CTGTGTGTGCCACCACTGTC 61.439 60.000 14.64 1.80 43.85 3.51
2640 3035 1.426251 TTGGACAGGGACAGCACCAT 61.426 55.000 0.00 0.00 0.00 3.55
2679 3075 1.812922 CCTAGCTTCACCTGCTGCG 60.813 63.158 0.00 0.00 41.32 5.18
2685 3081 0.886490 CTTCACCTGCTGCGACCTTT 60.886 55.000 0.00 0.00 0.00 3.11
2947 3430 2.362503 ACCCGCCTCACTCGATCA 60.363 61.111 0.00 0.00 0.00 2.92
3108 3749 7.495606 TCAATGCACGTGAAGATGAAGTATTAT 59.504 33.333 22.23 0.00 0.00 1.28
3175 3816 9.118300 TCACCATAATTTTTGCTCAATGTTTTT 57.882 25.926 0.00 0.00 0.00 1.94
3273 3915 5.880332 TGTTCAAAGCTGTAGTTGAAGAGTT 59.120 36.000 10.79 0.00 42.72 3.01
3274 3916 5.991328 TCAAAGCTGTAGTTGAAGAGTTG 57.009 39.130 0.00 0.00 30.93 3.16
3397 4041 0.178967 TTTCTGATGGGCAGGCACAA 60.179 50.000 0.00 0.00 44.98 3.33
3580 4224 8.768955 CATGTTGAGATAAATAGGTTAGTGAGC 58.231 37.037 0.00 0.00 0.00 4.26
4107 4997 2.443887 GTGAATGCACATTGGCTGTT 57.556 45.000 0.00 0.00 44.51 3.16
4480 5379 9.305925 CCTTAAATCTTGCACTAATTGATTTCC 57.694 33.333 0.00 0.00 38.07 3.13
4518 5417 0.249573 CTGGTTGCTTTGCCAAGTGG 60.250 55.000 0.00 0.00 33.93 4.00
4692 5592 2.230992 TGTAACTGTGGATGCAATTGGC 59.769 45.455 7.72 0.15 45.13 4.52
4845 5745 4.163268 AGGTAGAATTCTTGAGGCTCCTTC 59.837 45.833 14.36 7.30 0.00 3.46
4850 5750 1.933021 TCTTGAGGCTCCTTCCGTAA 58.067 50.000 12.86 0.00 0.00 3.18
4856 5756 0.679002 GGCTCCTTCCGTAAAACCCC 60.679 60.000 0.00 0.00 0.00 4.95
4930 5831 9.132923 TGATACACCTATAAACTCTACAAGAGG 57.867 37.037 8.69 0.00 46.45 3.69
5163 6072 8.788325 TTCAAGATAGGCAGATCATATGAATG 57.212 34.615 9.99 12.53 0.00 2.67
5266 6183 4.342665 TGTGGACCTATTGTTTTGTTTCCC 59.657 41.667 0.00 0.00 0.00 3.97
5273 6190 7.948357 ACCTATTGTTTTGTTTCCCTTTAGTC 58.052 34.615 0.00 0.00 0.00 2.59
5346 6266 2.583441 GCTGCCCCCTTTGTTTCCC 61.583 63.158 0.00 0.00 0.00 3.97
5402 6322 9.981114 GATTGAAAATTTCAGTTTCCTTCCTTA 57.019 29.630 8.51 0.00 41.38 2.69
5429 6350 1.059835 GCGTCACTTTGCTCGATCTTC 59.940 52.381 0.00 0.00 0.00 2.87
5458 6379 3.981071 TGTGACCTCCAGAAGTATTGG 57.019 47.619 0.00 0.00 37.04 3.16
5600 6521 1.394917 GCACATCCGCAGTACAAAGAG 59.605 52.381 0.00 0.00 0.00 2.85
5614 6535 7.217070 GCAGTACAAAGAGCGAATAAAAATCAG 59.783 37.037 0.00 0.00 0.00 2.90
5732 6696 4.840401 TTCAATTACATCGACAAGAGCG 57.160 40.909 0.00 0.00 0.00 5.03
5733 6697 4.104696 TCAATTACATCGACAAGAGCGA 57.895 40.909 0.00 0.00 42.48 4.93
5734 6698 4.490743 TCAATTACATCGACAAGAGCGAA 58.509 39.130 0.00 0.00 41.52 4.70
5735 6699 4.326278 TCAATTACATCGACAAGAGCGAAC 59.674 41.667 0.00 0.00 41.52 3.95
5736 6700 2.273370 TACATCGACAAGAGCGAACC 57.727 50.000 0.00 0.00 41.52 3.62
5737 6701 0.317160 ACATCGACAAGAGCGAACCA 59.683 50.000 0.00 0.00 41.52 3.67
5738 6702 1.270094 ACATCGACAAGAGCGAACCAA 60.270 47.619 0.00 0.00 41.52 3.67
5739 6703 1.126846 CATCGACAAGAGCGAACCAAC 59.873 52.381 0.00 0.00 41.52 3.77
5740 6704 0.599204 TCGACAAGAGCGAACCAACC 60.599 55.000 0.00 0.00 34.45 3.77
5741 6705 0.600255 CGACAAGAGCGAACCAACCT 60.600 55.000 0.00 0.00 0.00 3.50
5742 6706 1.336517 CGACAAGAGCGAACCAACCTA 60.337 52.381 0.00 0.00 0.00 3.08
5743 6707 2.674177 CGACAAGAGCGAACCAACCTAT 60.674 50.000 0.00 0.00 0.00 2.57
5744 6708 2.673368 GACAAGAGCGAACCAACCTATG 59.327 50.000 0.00 0.00 0.00 2.23
5759 6723 5.373812 AACCTATGGTTGGATGGTTAGAG 57.626 43.478 0.71 0.00 45.07 2.43
5760 6724 3.716872 ACCTATGGTTGGATGGTTAGAGG 59.283 47.826 0.00 0.00 27.29 3.69
5761 6725 3.073062 CCTATGGTTGGATGGTTAGAGGG 59.927 52.174 0.00 0.00 0.00 4.30
5762 6726 2.352561 TGGTTGGATGGTTAGAGGGA 57.647 50.000 0.00 0.00 0.00 4.20
5763 6727 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
5765 6729 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
5766 6730 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
5767 6731 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
5768 6732 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
5769 6733 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
5770 6734 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
5771 6735 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
5772 6736 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
5773 6737 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
5778 6742 1.527370 GGACTGTGGTATCCCCAGC 59.473 63.158 0.00 0.00 46.45 4.85
5779 6743 1.527370 GACTGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
5780 6744 1.984288 GACTGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
5781 6745 2.000701 CTGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
5782 6746 2.270874 CTGTGGTATCCCCAGCCCAC 62.271 65.000 0.00 0.00 46.45 4.61
5783 6747 2.694616 TGGTATCCCCAGCCCACC 60.695 66.667 0.00 0.00 38.72 4.61
5784 6748 2.694616 GGTATCCCCAGCCCACCA 60.695 66.667 0.00 0.00 0.00 4.17
5785 6749 2.757124 GGTATCCCCAGCCCACCAG 61.757 68.421 0.00 0.00 0.00 4.00
5786 6750 2.368192 TATCCCCAGCCCACCAGG 60.368 66.667 0.00 0.00 39.47 4.45
5787 6751 3.281975 TATCCCCAGCCCACCAGGT 62.282 63.158 0.00 0.00 38.26 4.00
5788 6752 2.798760 TATCCCCAGCCCACCAGGTT 62.799 60.000 0.00 0.00 38.26 3.50
5789 6753 4.366684 CCCCAGCCCACCAGGTTC 62.367 72.222 0.00 0.00 38.26 3.62
5790 6754 3.579302 CCCAGCCCACCAGGTTCA 61.579 66.667 0.00 0.00 38.26 3.18
5791 6755 2.520458 CCAGCCCACCAGGTTCAA 59.480 61.111 0.00 0.00 38.26 2.69
5792 6756 1.604593 CCAGCCCACCAGGTTCAAG 60.605 63.158 0.00 0.00 38.26 3.02
5793 6757 1.151450 CAGCCCACCAGGTTCAAGT 59.849 57.895 0.00 0.00 38.26 3.16
5794 6758 0.890996 CAGCCCACCAGGTTCAAGTC 60.891 60.000 0.00 0.00 38.26 3.01
5795 6759 1.150536 GCCCACCAGGTTCAAGTCA 59.849 57.895 0.00 0.00 38.26 3.41
5796 6760 0.251341 GCCCACCAGGTTCAAGTCAT 60.251 55.000 0.00 0.00 38.26 3.06
5797 6761 1.538047 CCCACCAGGTTCAAGTCATG 58.462 55.000 0.00 0.00 0.00 3.07
5798 6762 1.202927 CCCACCAGGTTCAAGTCATGT 60.203 52.381 0.00 0.00 0.00 3.21
5799 6763 1.881973 CCACCAGGTTCAAGTCATGTG 59.118 52.381 0.00 0.00 0.00 3.21
5800 6764 1.267806 CACCAGGTTCAAGTCATGTGC 59.732 52.381 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.937634 AAAATAAGCTCAATGACATTTGATCC 57.062 30.769 0.00 0.00 35.20 3.36
33 34 9.932207 TTGAAAATAAGCTCAATGACATTTGAT 57.068 25.926 0.00 0.00 35.20 2.57
142 149 0.106708 GTCCTGCCTATGAATCCGCA 59.893 55.000 0.00 0.00 0.00 5.69
209 217 1.675483 CATAGGGCGCAATGTGCTTTA 59.325 47.619 18.68 11.26 42.25 1.85
232 240 1.570813 CGTGGTCGCATGATGTACAT 58.429 50.000 8.43 8.43 40.17 2.29
384 463 1.374252 CCTGTGGTACAGCACGACC 60.374 63.158 7.03 0.00 44.63 4.79
406 485 0.672401 CACGTAAATGGCTGTCCCGT 60.672 55.000 0.00 0.00 35.87 5.28
413 492 0.591170 GTGTGTGCACGTAAATGGCT 59.409 50.000 13.13 0.00 35.75 4.75
453 532 3.650942 TCAAGTCCTCCCACACATACTTT 59.349 43.478 0.00 0.00 0.00 2.66
499 578 0.959553 TTCGACTAGATCCCGGATGC 59.040 55.000 4.08 0.00 0.00 3.91
580 659 6.262496 TCGACATTCATCTAAGTTCGGATAGT 59.738 38.462 0.00 0.00 0.00 2.12
601 680 4.723862 CGAAATTCATTCAAATCGGTCGAC 59.276 41.667 7.13 7.13 37.96 4.20
604 683 5.028375 GGACGAAATTCATTCAAATCGGTC 58.972 41.667 0.00 0.00 37.96 4.79
642 721 8.911918 ACGCTATTACCATATATTTCAAACCA 57.088 30.769 0.00 0.00 0.00 3.67
653 732 6.211584 AGAGTCATCCAACGCTATTACCATAT 59.788 38.462 0.00 0.00 0.00 1.78
658 737 3.975670 CGAGAGTCATCCAACGCTATTAC 59.024 47.826 0.00 0.00 28.79 1.89
660 739 2.427453 ACGAGAGTCATCCAACGCTATT 59.573 45.455 0.00 0.00 44.19 1.73
661 740 2.025155 ACGAGAGTCATCCAACGCTAT 58.975 47.619 0.00 0.00 44.19 2.97
703 794 0.552848 AATTCCCTGCATCCGTCCAT 59.447 50.000 0.00 0.00 0.00 3.41
753 845 0.173255 ATGGCGAAAAGAATTGGCCG 59.827 50.000 9.20 0.00 40.21 6.13
779 871 5.647225 GCAGTTTTCCAGAATCAGATTCTCT 59.353 40.000 21.07 12.12 46.17 3.10
787 879 2.559698 TCGGCAGTTTTCCAGAATCA 57.440 45.000 0.00 0.00 0.00 2.57
796 888 3.941483 CAGGTGATTCTATCGGCAGTTTT 59.059 43.478 0.00 0.00 0.00 2.43
807 899 1.951209 TCTGTGGGCAGGTGATTCTA 58.049 50.000 0.00 0.00 42.78 2.10
829 921 6.433847 TCTCAGAAAAGAACTGGATGGTTA 57.566 37.500 0.00 0.00 36.22 2.85
837 929 9.434420 ACAATCTAGAATCTCAGAAAAGAACTG 57.566 33.333 0.00 0.00 36.80 3.16
907 1000 2.478894 ACCGTTAACATTTCAGCACTCG 59.521 45.455 6.39 0.00 0.00 4.18
1437 1575 1.609501 CCTCTCCACGTTCCCCTGA 60.610 63.158 0.00 0.00 0.00 3.86
1456 1594 5.308976 TCTGCCCTGATATTTGCTATCAA 57.691 39.130 0.00 0.00 44.36 2.57
1521 1659 9.148104 GAAGACAAATTACACTATTTACCGAGT 57.852 33.333 0.00 0.00 0.00 4.18
1595 1733 3.635373 GTGTGAATGCCCAGATTGATGAT 59.365 43.478 0.00 0.00 0.00 2.45
1980 2285 1.649321 ACCTGCTCTGAAGATGGACA 58.351 50.000 0.00 0.00 0.00 4.02
2179 2490 1.228124 CGTTGGCTCAAGGGACCAA 60.228 57.895 0.00 0.00 41.08 3.67
2188 2499 1.116536 TGGAGGTGTACGTTGGCTCA 61.117 55.000 0.00 0.00 0.00 4.26
2196 2507 2.609459 GCATCATTCTTGGAGGTGTACG 59.391 50.000 0.00 0.00 0.00 3.67
2241 2552 2.742589 GGAAAACCCTCGATCAGTTGAC 59.257 50.000 0.00 0.00 0.00 3.18
2347 2727 0.678366 TGCACAAGTTGTCGGTTGGT 60.678 50.000 5.27 0.00 0.00 3.67
2860 3295 3.371063 GGCTCACCTCCGACGACA 61.371 66.667 0.00 0.00 0.00 4.35
3273 3915 6.770303 TGTTCAGAAACATAGGACACATTTCA 59.230 34.615 0.00 0.00 40.45 2.69
3274 3916 7.173218 TCTGTTCAGAAACATAGGACACATTTC 59.827 37.037 0.00 0.00 44.18 2.17
3377 4021 0.178967 TGTGCCTGCCCATCAGAAAA 60.179 50.000 0.00 0.00 45.72 2.29
3392 4036 5.424121 AATTAAGTCTGTGTCTGTTGTGC 57.576 39.130 0.00 0.00 0.00 4.57
3397 4041 9.862371 CATCTAGTTAATTAAGTCTGTGTCTGT 57.138 33.333 8.84 0.00 0.00 3.41
3509 4153 8.581578 TGAAAAAGACCCACCTCAATAATTAAC 58.418 33.333 0.00 0.00 0.00 2.01
3659 4303 7.281040 AGAACGGGTATCTTAATCGTATCAA 57.719 36.000 0.00 0.00 33.52 2.57
3973 4617 1.341531 CAGGTCCGAGTGAGTCAAACT 59.658 52.381 0.00 0.00 0.00 2.66
4103 4993 3.128242 GCTTCCTTGTCATCCATCAACAG 59.872 47.826 0.00 0.00 0.00 3.16
4107 4997 3.657398 ATGCTTCCTTGTCATCCATCA 57.343 42.857 0.00 0.00 0.00 3.07
4272 5163 9.397280 AGTAGGGAAATGAAAATAGAAGTTAGC 57.603 33.333 0.00 0.00 0.00 3.09
4465 5364 6.765915 AGAAAGAGGGAAATCAATTAGTGC 57.234 37.500 0.00 0.00 0.00 4.40
4480 5379 6.089249 ACCAGCATTTTTGTAAGAAAGAGG 57.911 37.500 0.00 0.00 0.00 3.69
4692 5592 2.691409 TATCTTCGTTCAAGGGCAGG 57.309 50.000 0.00 0.00 32.22 4.85
4845 5745 3.423749 ACCAAACATAGGGGTTTTACGG 58.576 45.455 0.00 0.00 38.86 4.02
4909 5810 6.380274 TGGTCCTCTTGTAGAGTTTATAGGTG 59.620 42.308 3.27 0.00 40.72 4.00
4930 5831 4.813296 AAGACGTTTGACTCATTTGGTC 57.187 40.909 0.00 0.00 0.00 4.02
5019 5928 5.749588 CACAATGAATGCTGAAACTTTCACA 59.250 36.000 0.00 5.03 36.78 3.58
5147 6056 6.016527 TGAGAAAAGCATTCATATGATCTGCC 60.017 38.462 25.61 16.03 35.15 4.85
5163 6072 1.949525 TCAAGCACCAGTGAGAAAAGC 59.050 47.619 0.99 0.00 0.00 3.51
5237 6154 0.973632 ACAATAGGTCCACACTGCGA 59.026 50.000 0.00 0.00 0.00 5.10
5266 6183 6.255887 CCTAAATTACCACAGAGCGACTAAAG 59.744 42.308 0.00 0.00 0.00 1.85
5273 6190 2.906354 AGCCTAAATTACCACAGAGCG 58.094 47.619 0.00 0.00 0.00 5.03
5346 6266 7.923888 CACCCAAAGTGTATTATCAAGAGATG 58.076 38.462 0.00 0.00 41.93 2.90
5402 6322 2.135933 GAGCAAAGTGACGCTAACTGT 58.864 47.619 0.00 0.00 38.99 3.55
5429 6350 4.336889 TCTGGAGGTCACAACAGTTTAG 57.663 45.455 0.00 0.00 32.92 1.85
5458 6379 5.700373 TGCAAAATTGGGAAGCAAATAAGAC 59.300 36.000 0.00 0.00 31.42 3.01
5738 6702 3.716872 CCTCTAACCATCCAACCATAGGT 59.283 47.826 0.00 0.00 37.65 3.08
5739 6703 3.073062 CCCTCTAACCATCCAACCATAGG 59.927 52.174 0.00 0.00 0.00 2.57
5740 6704 3.973973 TCCCTCTAACCATCCAACCATAG 59.026 47.826 0.00 0.00 0.00 2.23
5741 6705 3.714798 GTCCCTCTAACCATCCAACCATA 59.285 47.826 0.00 0.00 0.00 2.74
5742 6706 2.509964 GTCCCTCTAACCATCCAACCAT 59.490 50.000 0.00 0.00 0.00 3.55
5743 6707 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
5744 6708 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
5745 6709 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
5746 6710 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
5747 6711 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
5748 6712 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
5749 6713 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
5750 6714 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
5751 6715 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
5752 6716 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
5768 6732 2.757124 CCTGGTGGGCTGGGGATAC 61.757 68.421 0.00 0.00 0.00 2.24
5769 6733 2.368192 CCTGGTGGGCTGGGGATA 60.368 66.667 0.00 0.00 0.00 2.59
5770 6734 4.701437 ACCTGGTGGGCTGGGGAT 62.701 66.667 0.00 0.00 39.10 3.85
5771 6735 4.938756 AACCTGGTGGGCTGGGGA 62.939 66.667 0.00 0.00 39.10 4.81
5772 6736 4.366684 GAACCTGGTGGGCTGGGG 62.367 72.222 0.00 0.00 39.10 4.96
5773 6737 3.145473 TTGAACCTGGTGGGCTGGG 62.145 63.158 0.00 0.00 39.10 4.45
5774 6738 1.604593 CTTGAACCTGGTGGGCTGG 60.605 63.158 0.00 0.00 39.10 4.85
5775 6739 0.890996 GACTTGAACCTGGTGGGCTG 60.891 60.000 0.00 0.00 39.10 4.85
5776 6740 1.352622 TGACTTGAACCTGGTGGGCT 61.353 55.000 0.00 0.00 39.10 5.19
5777 6741 0.251341 ATGACTTGAACCTGGTGGGC 60.251 55.000 0.00 0.00 39.10 5.36
5778 6742 1.202927 ACATGACTTGAACCTGGTGGG 60.203 52.381 0.00 0.00 41.89 4.61
5779 6743 1.881973 CACATGACTTGAACCTGGTGG 59.118 52.381 0.00 0.00 39.83 4.61
5780 6744 1.267806 GCACATGACTTGAACCTGGTG 59.732 52.381 0.00 0.00 0.00 4.17
5781 6745 1.609208 GCACATGACTTGAACCTGGT 58.391 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.