Multiple sequence alignment - TraesCS2D01G267800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G267800 chr2D 100.000 2951 0 0 1 2951 327622014 327624964 0.000000e+00 5450.0
1 TraesCS2D01G267800 chr2A 95.865 2539 42 20 14 2500 432590704 432593231 0.000000e+00 4048.0
2 TraesCS2D01G267800 chr2A 87.671 146 11 2 2604 2743 432593226 432593370 2.350000e-36 163.0
3 TraesCS2D01G267800 chr2B 95.883 2453 47 16 74 2491 396955872 396958305 0.000000e+00 3921.0
4 TraesCS2D01G267800 chr2B 98.667 75 1 0 3 77 396955542 396955616 1.850000e-27 134.0
5 TraesCS2D01G267800 chr2B 94.340 53 2 1 2741 2793 496962131 496962182 2.440000e-11 80.5
6 TraesCS2D01G267800 chr4D 89.340 863 90 2 1088 1949 120072233 120071372 0.000000e+00 1083.0
7 TraesCS2D01G267800 chr4A 89.352 864 88 4 1088 1949 451595158 451594297 0.000000e+00 1083.0
8 TraesCS2D01G267800 chr4B 89.224 863 91 2 1088 1949 183002958 183002097 0.000000e+00 1077.0
9 TraesCS2D01G267800 chr4B 96.078 51 1 1 2741 2791 367296109 367296158 6.780000e-12 82.4
10 TraesCS2D01G267800 chr6A 94.545 55 3 0 2740 2794 224155934 224155988 5.240000e-13 86.1
11 TraesCS2D01G267800 chr6D 91.803 61 4 1 2741 2801 383526472 383526413 1.880000e-12 84.2
12 TraesCS2D01G267800 chr3D 94.545 55 2 1 2740 2794 598729891 598729838 1.880000e-12 84.2
13 TraesCS2D01G267800 chr7B 94.340 53 2 1 2740 2792 707898755 707898806 2.440000e-11 80.5
14 TraesCS2D01G267800 chr5B 91.525 59 4 1 2740 2798 577347522 577347465 2.440000e-11 80.5
15 TraesCS2D01G267800 chr3B 90.476 63 2 4 2732 2794 390224559 390224617 2.440000e-11 80.5
16 TraesCS2D01G267800 chrUn 92.727 55 3 1 2740 2794 324448655 324448708 8.770000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G267800 chr2D 327622014 327624964 2950 False 5450.0 5450 100.000 1 2951 1 chr2D.!!$F1 2950
1 TraesCS2D01G267800 chr2A 432590704 432593370 2666 False 2105.5 4048 91.768 14 2743 2 chr2A.!!$F1 2729
2 TraesCS2D01G267800 chr2B 396955542 396958305 2763 False 2027.5 3921 97.275 3 2491 2 chr2B.!!$F2 2488
3 TraesCS2D01G267800 chr4D 120071372 120072233 861 True 1083.0 1083 89.340 1088 1949 1 chr4D.!!$R1 861
4 TraesCS2D01G267800 chr4A 451594297 451595158 861 True 1083.0 1083 89.352 1088 1949 1 chr4A.!!$R1 861
5 TraesCS2D01G267800 chr4B 183002097 183002958 861 True 1077.0 1077 89.224 1088 1949 1 chr4B.!!$R1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 396 0.034337 TTCTCGAAAGGTTCCCACGG 59.966 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2119 2439 0.955178 ACTGACCGACTGACTGACTG 59.045 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 395 1.000506 TCTTCTCGAAAGGTTCCCACG 59.999 52.381 7.27 0.00 0.00 4.94
136 396 0.034337 TTCTCGAAAGGTTCCCACGG 59.966 55.000 0.00 0.00 0.00 4.94
216 476 3.715287 TGTATTGCCACAGACCCTACTA 58.285 45.455 0.00 0.00 0.00 1.82
245 505 8.792830 AATAGCTATGTTGATGTTGTGTTACT 57.207 30.769 7.09 0.00 0.00 2.24
246 506 8.792830 ATAGCTATGTTGATGTTGTGTTACTT 57.207 30.769 5.15 0.00 0.00 2.24
352 618 7.940688 TGATCATGGTTACATAGAAATGAGCAT 59.059 33.333 0.00 0.00 36.02 3.79
381 647 8.982723 TCTTTTGTTAGTATAGGAAGAGCAGAT 58.017 33.333 0.00 0.00 0.00 2.90
888 1200 1.431488 CCATCACGCACCTTCATCCG 61.431 60.000 0.00 0.00 0.00 4.18
969 1287 4.214327 CGCCGCCTCCCTTCTCTC 62.214 72.222 0.00 0.00 0.00 3.20
970 1288 2.762043 GCCGCCTCCCTTCTCTCT 60.762 66.667 0.00 0.00 0.00 3.10
1966 2286 0.240945 GTGATCTTTGTTGGCCACCG 59.759 55.000 3.88 0.00 0.00 4.94
2237 2573 1.702957 TCCATCCTTTTCCTCCGTGTT 59.297 47.619 0.00 0.00 0.00 3.32
2238 2574 2.907696 TCCATCCTTTTCCTCCGTGTTA 59.092 45.455 0.00 0.00 0.00 2.41
2239 2575 3.521937 TCCATCCTTTTCCTCCGTGTTAT 59.478 43.478 0.00 0.00 0.00 1.89
2240 2576 4.717778 TCCATCCTTTTCCTCCGTGTTATA 59.282 41.667 0.00 0.00 0.00 0.98
2241 2577 5.057149 CCATCCTTTTCCTCCGTGTTATAG 58.943 45.833 0.00 0.00 0.00 1.31
2242 2578 4.748277 TCCTTTTCCTCCGTGTTATAGG 57.252 45.455 0.00 0.00 0.00 2.57
2243 2579 3.118519 TCCTTTTCCTCCGTGTTATAGGC 60.119 47.826 0.00 0.00 0.00 3.93
2244 2580 3.370103 CCTTTTCCTCCGTGTTATAGGCA 60.370 47.826 0.00 0.00 0.00 4.75
2245 2581 4.451900 CTTTTCCTCCGTGTTATAGGCAT 58.548 43.478 0.00 0.00 0.00 4.40
2246 2582 3.469008 TTCCTCCGTGTTATAGGCATG 57.531 47.619 0.00 0.00 0.00 4.06
2247 2583 2.394632 TCCTCCGTGTTATAGGCATGT 58.605 47.619 0.00 0.00 0.00 3.21
2270 2606 6.878923 TGTACTCTTGCTACTATGCATTTTGT 59.121 34.615 3.54 4.70 42.96 2.83
2272 2608 6.846350 ACTCTTGCTACTATGCATTTTGTTC 58.154 36.000 3.54 0.00 42.96 3.18
2342 2681 3.364964 CCAATTGCTACCGACAACTCAAC 60.365 47.826 0.00 0.00 0.00 3.18
2383 2722 7.976734 ACTGTACTTGATTAGCACTCACTATTC 59.023 37.037 0.00 0.00 0.00 1.75
2482 2822 4.286297 TGCAATACAAGGTGCTTAGAGT 57.714 40.909 0.00 0.00 41.48 3.24
2491 2831 4.399004 AGGTGCTTAGAGTGATGCTTAG 57.601 45.455 0.00 0.00 0.00 2.18
2492 2832 3.772025 AGGTGCTTAGAGTGATGCTTAGT 59.228 43.478 0.00 0.00 0.00 2.24
2493 2833 4.956700 AGGTGCTTAGAGTGATGCTTAGTA 59.043 41.667 0.00 0.00 0.00 1.82
2494 2834 5.422331 AGGTGCTTAGAGTGATGCTTAGTAA 59.578 40.000 0.00 0.00 0.00 2.24
2496 2836 6.256757 GGTGCTTAGAGTGATGCTTAGTAAAG 59.743 42.308 0.00 0.00 35.68 1.85
2497 2837 6.814146 GTGCTTAGAGTGATGCTTAGTAAAGT 59.186 38.462 0.00 0.00 34.99 2.66
2498 2838 7.974501 GTGCTTAGAGTGATGCTTAGTAAAGTA 59.025 37.037 0.00 0.00 34.99 2.24
2499 2839 8.528643 TGCTTAGAGTGATGCTTAGTAAAGTAA 58.471 33.333 0.00 0.00 34.99 2.24
2500 2840 9.367444 GCTTAGAGTGATGCTTAGTAAAGTAAA 57.633 33.333 0.00 0.00 34.99 2.01
2504 2844 9.944376 AGAGTGATGCTTAGTAAAGTAAATCAA 57.056 29.630 0.00 0.00 34.20 2.57
2543 2883 8.958119 ACAACGATGCTTATTTTTATAGGAGA 57.042 30.769 0.00 0.00 0.00 3.71
2544 2884 9.046296 ACAACGATGCTTATTTTTATAGGAGAG 57.954 33.333 0.00 0.00 0.00 3.20
2545 2885 9.261180 CAACGATGCTTATTTTTATAGGAGAGA 57.739 33.333 0.00 0.00 0.00 3.10
2590 2930 9.210329 TCTGTAGAAGAGATATCTAGTTAAGCG 57.790 37.037 4.89 0.00 30.33 4.68
2591 2931 8.905660 TGTAGAAGAGATATCTAGTTAAGCGT 57.094 34.615 4.89 0.00 30.33 5.07
2592 2932 9.993454 TGTAGAAGAGATATCTAGTTAAGCGTA 57.007 33.333 4.89 0.00 30.33 4.42
2595 2935 9.509956 AGAAGAGATATCTAGTTAAGCGTATGT 57.490 33.333 4.89 0.00 0.00 2.29
2596 2936 9.763465 GAAGAGATATCTAGTTAAGCGTATGTC 57.237 37.037 4.89 0.00 0.00 3.06
2597 2937 9.509956 AAGAGATATCTAGTTAAGCGTATGTCT 57.490 33.333 4.89 0.00 32.47 3.41
2598 2938 9.509956 AGAGATATCTAGTTAAGCGTATGTCTT 57.490 33.333 4.89 0.00 29.62 3.01
2599 2939 9.763465 GAGATATCTAGTTAAGCGTATGTCTTC 57.237 37.037 4.89 0.00 0.00 2.87
2600 2940 9.509956 AGATATCTAGTTAAGCGTATGTCTTCT 57.490 33.333 2.53 0.00 0.00 2.85
2615 2955 8.799091 CGTATGTCTTCTATAAATAAGCATCGG 58.201 37.037 0.00 0.00 0.00 4.18
2663 3003 6.798427 TCTCTAAACATCTCCTGTAAGCAT 57.202 37.500 0.00 0.00 36.98 3.79
2665 3005 6.381133 TCTCTAAACATCTCCTGTAAGCATGA 59.619 38.462 0.00 0.00 36.98 3.07
2666 3006 6.341316 TCTAAACATCTCCTGTAAGCATGAC 58.659 40.000 0.00 0.00 36.98 3.06
2667 3007 3.170791 ACATCTCCTGTAAGCATGACG 57.829 47.619 0.00 0.00 35.91 4.35
2668 3008 1.863454 CATCTCCTGTAAGCATGACGC 59.137 52.381 0.00 0.00 42.91 5.19
2681 3027 1.256376 CATGACGCTTGCTCGTACATC 59.744 52.381 0.00 0.00 43.42 3.06
2684 3030 0.037697 ACGCTTGCTCGTACATCCAA 60.038 50.000 0.00 0.00 41.36 3.53
2714 3060 3.367743 ACGTCAAGCGGGCGTCTA 61.368 61.111 5.24 0.00 46.52 2.59
2716 3062 2.882876 GTCAAGCGGGCGTCTAGA 59.117 61.111 0.00 0.00 0.00 2.43
2717 3063 1.516603 GTCAAGCGGGCGTCTAGAC 60.517 63.158 13.18 13.18 0.00 2.59
2734 3080 1.070289 AGACCAGAACGTTGGAGGAAC 59.930 52.381 13.22 8.17 40.87 3.62
2743 3089 1.268899 CGTTGGAGGAACAGACGTACT 59.731 52.381 0.00 0.00 33.73 2.73
2744 3090 2.667724 CGTTGGAGGAACAGACGTACTC 60.668 54.545 0.00 0.00 33.73 2.59
2745 3091 2.281539 TGGAGGAACAGACGTACTCA 57.718 50.000 0.00 0.00 33.25 3.41
2746 3092 2.589720 TGGAGGAACAGACGTACTCAA 58.410 47.619 0.00 0.00 33.25 3.02
2747 3093 2.960384 TGGAGGAACAGACGTACTCAAA 59.040 45.455 0.00 0.00 33.25 2.69
2748 3094 3.005472 TGGAGGAACAGACGTACTCAAAG 59.995 47.826 0.00 0.00 33.25 2.77
2749 3095 3.005578 GGAGGAACAGACGTACTCAAAGT 59.994 47.826 0.00 0.00 33.25 2.66
2750 3096 4.501058 GGAGGAACAGACGTACTCAAAGTT 60.501 45.833 0.00 0.00 33.25 2.66
2751 3097 5.278660 GGAGGAACAGACGTACTCAAAGTTA 60.279 44.000 0.00 0.00 33.25 2.24
2752 3098 5.770417 AGGAACAGACGTACTCAAAGTTAG 58.230 41.667 0.00 0.00 0.00 2.34
2753 3099 5.301298 AGGAACAGACGTACTCAAAGTTAGT 59.699 40.000 0.00 0.00 0.00 2.24
2754 3100 6.488006 AGGAACAGACGTACTCAAAGTTAGTA 59.512 38.462 0.00 0.00 0.00 1.82
2755 3101 7.176340 AGGAACAGACGTACTCAAAGTTAGTAT 59.824 37.037 0.00 0.00 32.34 2.12
2756 3102 8.454106 GGAACAGACGTACTCAAAGTTAGTATA 58.546 37.037 0.00 0.00 32.34 1.47
2757 3103 9.831737 GAACAGACGTACTCAAAGTTAGTATAA 57.168 33.333 0.00 0.00 32.34 0.98
2759 3105 9.837525 ACAGACGTACTCAAAGTTAGTATAAAG 57.162 33.333 0.00 0.00 32.34 1.85
2760 3106 9.837525 CAGACGTACTCAAAGTTAGTATAAAGT 57.162 33.333 0.00 0.00 32.34 2.66
2763 3109 9.415544 ACGTACTCAAAGTTAGTATAAAGTTGG 57.584 33.333 0.00 0.00 32.34 3.77
2764 3110 8.866956 CGTACTCAAAGTTAGTATAAAGTTGGG 58.133 37.037 0.00 0.00 32.34 4.12
2765 3111 9.716531 GTACTCAAAGTTAGTATAAAGTTGGGT 57.283 33.333 0.00 0.00 32.34 4.51
2766 3112 8.843885 ACTCAAAGTTAGTATAAAGTTGGGTC 57.156 34.615 0.00 0.00 0.00 4.46
2767 3113 8.434392 ACTCAAAGTTAGTATAAAGTTGGGTCA 58.566 33.333 0.00 0.00 0.00 4.02
2768 3114 9.449719 CTCAAAGTTAGTATAAAGTTGGGTCAT 57.550 33.333 0.00 0.00 0.00 3.06
2769 3115 9.444600 TCAAAGTTAGTATAAAGTTGGGTCATC 57.555 33.333 0.00 0.00 0.00 2.92
2770 3116 9.449719 CAAAGTTAGTATAAAGTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
2781 3127 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
2782 3128 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
2783 3129 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
2784 3130 5.317808 TGGGTCATCTATTTTGAAACGGAA 58.682 37.500 0.00 0.00 0.00 4.30
2785 3131 5.414454 TGGGTCATCTATTTTGAAACGGAAG 59.586 40.000 0.00 0.00 0.00 3.46
2786 3132 5.646360 GGGTCATCTATTTTGAAACGGAAGA 59.354 40.000 0.00 0.00 0.00 2.87
2787 3133 6.150474 GGGTCATCTATTTTGAAACGGAAGAA 59.850 38.462 0.00 0.00 0.00 2.52
2788 3134 7.244192 GGTCATCTATTTTGAAACGGAAGAAG 58.756 38.462 0.00 0.00 0.00 2.85
2789 3135 7.094762 GGTCATCTATTTTGAAACGGAAGAAGT 60.095 37.037 0.00 0.00 0.00 3.01
2790 3136 8.932791 GTCATCTATTTTGAAACGGAAGAAGTA 58.067 33.333 0.00 0.00 0.00 2.24
2791 3137 8.932791 TCATCTATTTTGAAACGGAAGAAGTAC 58.067 33.333 0.00 0.00 0.00 2.73
2792 3138 8.717821 CATCTATTTTGAAACGGAAGAAGTACA 58.282 33.333 0.00 0.00 0.00 2.90
2793 3139 8.665643 TCTATTTTGAAACGGAAGAAGTACAA 57.334 30.769 0.00 0.00 0.00 2.41
2794 3140 9.111613 TCTATTTTGAAACGGAAGAAGTACAAA 57.888 29.630 0.00 0.00 0.00 2.83
2795 3141 9.724839 CTATTTTGAAACGGAAGAAGTACAAAA 57.275 29.630 0.00 0.00 39.54 2.44
2796 3142 7.800015 TTTTGAAACGGAAGAAGTACAAAAC 57.200 32.000 0.00 0.00 35.43 2.43
2797 3143 6.497785 TTGAAACGGAAGAAGTACAAAACA 57.502 33.333 0.00 0.00 0.00 2.83
2798 3144 6.114221 TGAAACGGAAGAAGTACAAAACAG 57.886 37.500 0.00 0.00 0.00 3.16
2799 3145 5.875910 TGAAACGGAAGAAGTACAAAACAGA 59.124 36.000 0.00 0.00 0.00 3.41
2800 3146 6.540914 TGAAACGGAAGAAGTACAAAACAGAT 59.459 34.615 0.00 0.00 0.00 2.90
2801 3147 6.541111 AACGGAAGAAGTACAAAACAGATC 57.459 37.500 0.00 0.00 0.00 2.75
2802 3148 5.855045 ACGGAAGAAGTACAAAACAGATCT 58.145 37.500 0.00 0.00 0.00 2.75
2803 3149 6.289064 ACGGAAGAAGTACAAAACAGATCTT 58.711 36.000 0.00 0.00 33.25 2.40
2804 3150 7.439381 ACGGAAGAAGTACAAAACAGATCTTA 58.561 34.615 0.00 0.00 31.74 2.10
2805 3151 7.929785 ACGGAAGAAGTACAAAACAGATCTTAA 59.070 33.333 0.00 0.00 31.74 1.85
2806 3152 8.936864 CGGAAGAAGTACAAAACAGATCTTAAT 58.063 33.333 0.00 0.00 31.74 1.40
2808 3154 9.959775 GAAGAAGTACAAAACAGATCTTAATCG 57.040 33.333 0.00 0.00 36.97 3.34
2809 3155 7.965045 AGAAGTACAAAACAGATCTTAATCGC 58.035 34.615 0.00 0.00 36.97 4.58
2810 3156 6.332504 AGTACAAAACAGATCTTAATCGCG 57.667 37.500 0.00 0.00 36.97 5.87
2811 3157 4.003519 ACAAAACAGATCTTAATCGCGC 57.996 40.909 0.00 0.00 36.97 6.86
2812 3158 2.998668 AAACAGATCTTAATCGCGCG 57.001 45.000 26.76 26.76 36.97 6.86
2813 3159 0.577269 AACAGATCTTAATCGCGCGC 59.423 50.000 27.95 23.91 36.97 6.86
2814 3160 1.126635 CAGATCTTAATCGCGCGCG 59.873 57.895 44.84 44.84 36.97 6.86
2815 3161 1.299165 AGATCTTAATCGCGCGCGT 60.299 52.632 46.54 33.84 40.74 6.01
2816 3162 1.155016 GATCTTAATCGCGCGCGTG 60.155 57.895 46.54 35.70 40.74 5.34
2817 3163 3.210419 ATCTTAATCGCGCGCGTGC 62.210 57.895 46.54 33.45 40.74 5.34
2818 3164 4.203542 CTTAATCGCGCGCGTGCA 62.204 61.111 46.54 32.32 42.97 4.57
2819 3165 4.492863 TTAATCGCGCGCGTGCAC 62.493 61.111 46.54 16.75 42.97 4.57
2834 3180 2.961424 GCACATGCAAGTTAGGGGT 58.039 52.632 0.00 0.00 41.59 4.95
2835 3181 1.256812 GCACATGCAAGTTAGGGGTT 58.743 50.000 0.00 0.00 41.59 4.11
2836 3182 2.442413 GCACATGCAAGTTAGGGGTTA 58.558 47.619 0.00 0.00 41.59 2.85
2837 3183 2.423538 GCACATGCAAGTTAGGGGTTAG 59.576 50.000 0.00 0.00 41.59 2.34
2838 3184 3.016736 CACATGCAAGTTAGGGGTTAGG 58.983 50.000 0.00 0.00 0.00 2.69
2839 3185 2.916934 ACATGCAAGTTAGGGGTTAGGA 59.083 45.455 0.00 0.00 0.00 2.94
2840 3186 3.279434 CATGCAAGTTAGGGGTTAGGAC 58.721 50.000 0.00 0.00 0.00 3.85
2841 3187 2.340731 TGCAAGTTAGGGGTTAGGACA 58.659 47.619 0.00 0.00 0.00 4.02
2842 3188 2.916934 TGCAAGTTAGGGGTTAGGACAT 59.083 45.455 0.00 0.00 0.00 3.06
2843 3189 3.332485 TGCAAGTTAGGGGTTAGGACATT 59.668 43.478 0.00 0.00 0.00 2.71
2844 3190 4.202631 TGCAAGTTAGGGGTTAGGACATTT 60.203 41.667 0.00 0.00 0.00 2.32
2845 3191 5.014333 TGCAAGTTAGGGGTTAGGACATTTA 59.986 40.000 0.00 0.00 0.00 1.40
2846 3192 5.356190 GCAAGTTAGGGGTTAGGACATTTAC 59.644 44.000 0.00 0.00 0.00 2.01
2847 3193 6.718294 CAAGTTAGGGGTTAGGACATTTACT 58.282 40.000 0.00 0.00 0.00 2.24
2848 3194 6.309389 AGTTAGGGGTTAGGACATTTACTG 57.691 41.667 0.00 0.00 0.00 2.74
2849 3195 6.027482 AGTTAGGGGTTAGGACATTTACTGA 58.973 40.000 0.00 0.00 0.00 3.41
2850 3196 6.677076 AGTTAGGGGTTAGGACATTTACTGAT 59.323 38.462 0.00 0.00 0.00 2.90
2851 3197 7.847848 AGTTAGGGGTTAGGACATTTACTGATA 59.152 37.037 0.00 0.00 0.00 2.15
2852 3198 8.488668 GTTAGGGGTTAGGACATTTACTGATAA 58.511 37.037 0.00 0.00 0.00 1.75
2853 3199 7.138054 AGGGGTTAGGACATTTACTGATAAG 57.862 40.000 0.00 0.00 0.00 1.73
2854 3200 6.906901 AGGGGTTAGGACATTTACTGATAAGA 59.093 38.462 0.00 0.00 0.00 2.10
2855 3201 6.990939 GGGGTTAGGACATTTACTGATAAGAC 59.009 42.308 0.00 0.00 0.00 3.01
2856 3202 6.990939 GGGTTAGGACATTTACTGATAAGACC 59.009 42.308 0.00 0.00 0.00 3.85
2857 3203 7.365295 GGGTTAGGACATTTACTGATAAGACCA 60.365 40.741 0.00 0.00 0.00 4.02
2858 3204 8.211629 GGTTAGGACATTTACTGATAAGACCAT 58.788 37.037 0.00 0.00 0.00 3.55
2862 3208 8.938883 AGGACATTTACTGATAAGACCATATGT 58.061 33.333 1.24 0.00 0.00 2.29
2870 3216 8.557592 ACTGATAAGACCATATGTAATGCATG 57.442 34.615 0.00 0.00 38.47 4.06
2871 3217 8.377799 ACTGATAAGACCATATGTAATGCATGA 58.622 33.333 0.00 0.00 38.47 3.07
2872 3218 9.392259 CTGATAAGACCATATGTAATGCATGAT 57.608 33.333 0.00 0.00 38.47 2.45
2873 3219 9.169592 TGATAAGACCATATGTAATGCATGATG 57.830 33.333 0.00 0.00 38.47 3.07
2874 3220 5.892160 AGACCATATGTAATGCATGATGC 57.108 39.130 11.12 11.12 45.29 3.91
2875 3221 5.567430 AGACCATATGTAATGCATGATGCT 58.433 37.500 19.19 1.31 45.31 3.79
2876 3222 6.008331 AGACCATATGTAATGCATGATGCTT 58.992 36.000 19.19 9.64 45.31 3.91
2877 3223 7.170277 AGACCATATGTAATGCATGATGCTTA 58.830 34.615 19.19 11.31 45.31 3.09
2878 3224 7.336176 AGACCATATGTAATGCATGATGCTTAG 59.664 37.037 19.19 4.87 45.31 2.18
2879 3225 7.170277 ACCATATGTAATGCATGATGCTTAGA 58.830 34.615 19.19 12.59 45.31 2.10
2880 3226 7.336176 ACCATATGTAATGCATGATGCTTAGAG 59.664 37.037 19.19 4.69 45.31 2.43
2881 3227 7.551617 CCATATGTAATGCATGATGCTTAGAGA 59.448 37.037 19.19 10.37 45.31 3.10
2882 3228 8.604890 CATATGTAATGCATGATGCTTAGAGAG 58.395 37.037 19.19 4.49 45.31 3.20
2883 3229 6.165700 TGTAATGCATGATGCTTAGAGAGA 57.834 37.500 19.19 0.00 45.31 3.10
2884 3230 6.221659 TGTAATGCATGATGCTTAGAGAGAG 58.778 40.000 19.19 0.00 45.31 3.20
2885 3231 3.747854 TGCATGATGCTTAGAGAGAGG 57.252 47.619 19.19 0.00 45.31 3.69
2886 3232 3.036819 TGCATGATGCTTAGAGAGAGGT 58.963 45.455 19.19 0.00 45.31 3.85
2887 3233 4.218312 TGCATGATGCTTAGAGAGAGGTA 58.782 43.478 19.19 0.00 45.31 3.08
2888 3234 4.038522 TGCATGATGCTTAGAGAGAGGTAC 59.961 45.833 19.19 0.00 45.31 3.34
2889 3235 4.280677 GCATGATGCTTAGAGAGAGGTACT 59.719 45.833 10.72 0.00 41.13 2.73
2890 3236 5.221422 GCATGATGCTTAGAGAGAGGTACTT 60.221 44.000 10.72 0.00 38.95 2.24
2891 3237 6.685116 GCATGATGCTTAGAGAGAGGTACTTT 60.685 42.308 10.72 0.00 38.95 2.66
2892 3238 6.214191 TGATGCTTAGAGAGAGGTACTTTG 57.786 41.667 0.00 0.00 41.55 2.77
2893 3239 5.717178 TGATGCTTAGAGAGAGGTACTTTGT 59.283 40.000 0.00 0.00 41.55 2.83
2894 3240 6.211584 TGATGCTTAGAGAGAGGTACTTTGTT 59.788 38.462 0.00 0.00 41.55 2.83
2895 3241 5.784177 TGCTTAGAGAGAGGTACTTTGTTG 58.216 41.667 0.00 0.00 41.55 3.33
2896 3242 5.304614 TGCTTAGAGAGAGGTACTTTGTTGT 59.695 40.000 0.00 0.00 41.55 3.32
2897 3243 5.635700 GCTTAGAGAGAGGTACTTTGTTGTG 59.364 44.000 0.00 0.00 41.55 3.33
2898 3244 6.726490 TTAGAGAGAGGTACTTTGTTGTGT 57.274 37.500 0.00 0.00 41.55 3.72
2899 3245 7.523380 GCTTAGAGAGAGGTACTTTGTTGTGTA 60.523 40.741 0.00 0.00 41.55 2.90
2900 3246 6.726490 AGAGAGAGGTACTTTGTTGTGTAA 57.274 37.500 0.00 0.00 41.55 2.41
2901 3247 7.120923 AGAGAGAGGTACTTTGTTGTGTAAA 57.879 36.000 0.00 0.00 41.55 2.01
2902 3248 7.562135 AGAGAGAGGTACTTTGTTGTGTAAAA 58.438 34.615 0.00 0.00 41.55 1.52
2903 3249 7.711339 AGAGAGAGGTACTTTGTTGTGTAAAAG 59.289 37.037 0.00 0.00 41.55 2.27
2904 3250 7.562135 AGAGAGGTACTTTGTTGTGTAAAAGA 58.438 34.615 2.38 0.00 41.55 2.52
2905 3251 8.044908 AGAGAGGTACTTTGTTGTGTAAAAGAA 58.955 33.333 2.38 0.00 41.55 2.52
2906 3252 8.570068 AGAGGTACTTTGTTGTGTAAAAGAAA 57.430 30.769 2.38 0.00 41.55 2.52
2907 3253 9.016438 AGAGGTACTTTGTTGTGTAAAAGAAAA 57.984 29.630 2.38 0.00 41.55 2.29
2908 3254 9.797556 GAGGTACTTTGTTGTGTAAAAGAAAAT 57.202 29.630 2.38 0.00 41.55 1.82
2927 3273 7.894847 AGAAAATTCAACTTTTTAAGCACACG 58.105 30.769 0.00 0.00 0.00 4.49
2928 3274 7.544217 AGAAAATTCAACTTTTTAAGCACACGT 59.456 29.630 0.00 0.00 0.00 4.49
2929 3275 6.567769 AATTCAACTTTTTAAGCACACGTG 57.432 33.333 15.48 15.48 0.00 4.49
2930 3276 4.688511 TCAACTTTTTAAGCACACGTGT 57.311 36.364 17.22 17.22 0.00 4.49
2931 3277 5.049398 TCAACTTTTTAAGCACACGTGTT 57.951 34.783 20.79 7.63 0.00 3.32
2932 3278 5.462405 TCAACTTTTTAAGCACACGTGTTT 58.538 33.333 20.79 14.69 37.72 2.83
2933 3279 5.343593 TCAACTTTTTAAGCACACGTGTTTG 59.656 36.000 20.79 16.26 35.63 2.93
2934 3280 3.610677 ACTTTTTAAGCACACGTGTTTGC 59.389 39.130 20.79 20.43 39.16 3.68
2940 3286 2.399396 GCACACGTGTTTGCTTATGT 57.601 45.000 20.79 0.00 35.74 2.29
2941 3287 3.529634 GCACACGTGTTTGCTTATGTA 57.470 42.857 20.79 0.00 35.74 2.29
2942 3288 3.479006 GCACACGTGTTTGCTTATGTAG 58.521 45.455 20.79 4.05 35.74 2.74
2943 3289 3.059188 GCACACGTGTTTGCTTATGTAGT 60.059 43.478 20.79 0.00 35.74 2.73
2944 3290 4.150980 GCACACGTGTTTGCTTATGTAGTA 59.849 41.667 20.79 0.00 35.74 1.82
2945 3291 5.667888 GCACACGTGTTTGCTTATGTAGTAG 60.668 44.000 20.79 2.64 35.74 2.57
2946 3292 5.631929 CACACGTGTTTGCTTATGTAGTAGA 59.368 40.000 20.79 0.00 0.00 2.59
2947 3293 5.862323 ACACGTGTTTGCTTATGTAGTAGAG 59.138 40.000 17.22 0.00 0.00 2.43
2948 3294 6.090783 CACGTGTTTGCTTATGTAGTAGAGA 58.909 40.000 7.58 0.00 0.00 3.10
2949 3295 6.752351 CACGTGTTTGCTTATGTAGTAGAGAT 59.248 38.462 7.58 0.00 0.00 2.75
2950 3296 6.752351 ACGTGTTTGCTTATGTAGTAGAGATG 59.248 38.462 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.984508 TGCGACTTACTATGAGCCTAC 57.015 47.619 0.00 0.00 0.00 3.18
19 20 3.831715 AAAGGCTTTGACTAACGATGC 57.168 42.857 12.53 0.00 33.81 3.91
155 415 9.021807 ACATGAAAAAGAGATGACATTCTTCAT 57.978 29.630 0.00 8.89 39.02 2.57
156 416 8.400184 ACATGAAAAAGAGATGACATTCTTCA 57.600 30.769 0.00 7.57 32.71 3.02
157 417 8.509690 TGACATGAAAAAGAGATGACATTCTTC 58.490 33.333 0.00 2.01 32.71 2.87
172 432 6.262944 ACAATACTCTGCACTGACATGAAAAA 59.737 34.615 0.00 0.00 0.00 1.94
352 618 9.787435 TGCTCTTCCTATACTAACAAAAGAAAA 57.213 29.630 0.00 0.00 0.00 2.29
381 647 1.736126 CCTACGACTACGAGACAAGCA 59.264 52.381 0.00 0.00 42.66 3.91
888 1200 3.002348 GTGGCAGCAATTCTTATACCGAC 59.998 47.826 0.00 0.00 0.00 4.79
961 1279 3.023832 GGAGTGAGGAGAAGAGAGAAGG 58.976 54.545 0.00 0.00 0.00 3.46
963 1281 2.652348 AGGGAGTGAGGAGAAGAGAGAA 59.348 50.000 0.00 0.00 0.00 2.87
969 1287 1.388547 CGAGAGGGAGTGAGGAGAAG 58.611 60.000 0.00 0.00 0.00 2.85
970 1288 0.681564 GCGAGAGGGAGTGAGGAGAA 60.682 60.000 0.00 0.00 0.00 2.87
1966 2286 6.715347 ATTATTTTGGGAGCTGGTATTGAC 57.285 37.500 0.00 0.00 0.00 3.18
2119 2439 0.955178 ACTGACCGACTGACTGACTG 59.045 55.000 0.00 0.00 0.00 3.51
2237 2573 7.363007 GCATAGTAGCAAGAGTACATGCCTATA 60.363 40.741 12.82 5.88 40.93 1.31
2238 2574 6.573289 GCATAGTAGCAAGAGTACATGCCTAT 60.573 42.308 12.82 10.82 40.93 2.57
2239 2575 5.279006 GCATAGTAGCAAGAGTACATGCCTA 60.279 44.000 12.82 9.43 40.93 3.93
2240 2576 4.502259 GCATAGTAGCAAGAGTACATGCCT 60.502 45.833 12.82 7.95 40.93 4.75
2241 2577 3.743396 GCATAGTAGCAAGAGTACATGCC 59.257 47.826 12.82 2.01 40.93 4.40
2242 2578 4.371786 TGCATAGTAGCAAGAGTACATGC 58.628 43.478 9.51 9.51 42.46 4.06
2272 2608 6.630443 CAGAGAAACAACAACGAATCTGAAAG 59.370 38.462 0.00 0.00 35.97 2.62
2383 2722 4.024809 GCTGCCTAATTTCTACTTTAGCCG 60.025 45.833 0.00 0.00 0.00 5.52
2460 2800 4.455533 CACTCTAAGCACCTTGTATTGCAA 59.544 41.667 0.00 0.00 41.48 4.08
2462 2802 4.253685 TCACTCTAAGCACCTTGTATTGC 58.746 43.478 0.00 0.00 39.16 3.56
2517 2857 9.391006 TCTCCTATAAAAATAAGCATCGTTGTT 57.609 29.630 0.00 0.00 0.00 2.83
2518 2858 8.958119 TCTCCTATAAAAATAAGCATCGTTGT 57.042 30.769 0.00 0.00 0.00 3.32
2519 2859 9.261180 TCTCTCCTATAAAAATAAGCATCGTTG 57.739 33.333 0.00 0.00 0.00 4.10
2564 2904 9.210329 CGCTTAACTAGATATCTCTTCTACAGA 57.790 37.037 8.95 0.00 32.66 3.41
2565 2905 8.995220 ACGCTTAACTAGATATCTCTTCTACAG 58.005 37.037 8.95 1.58 32.66 2.74
2566 2906 8.905660 ACGCTTAACTAGATATCTCTTCTACA 57.094 34.615 8.95 0.00 32.66 2.74
2569 2909 9.509956 ACATACGCTTAACTAGATATCTCTTCT 57.490 33.333 8.95 0.00 32.66 2.85
2570 2910 9.763465 GACATACGCTTAACTAGATATCTCTTC 57.237 37.037 8.95 0.00 32.66 2.87
2571 2911 9.509956 AGACATACGCTTAACTAGATATCTCTT 57.490 33.333 8.95 4.75 32.66 2.85
2572 2912 9.509956 AAGACATACGCTTAACTAGATATCTCT 57.490 33.333 8.95 0.00 35.39 3.10
2573 2913 9.763465 GAAGACATACGCTTAACTAGATATCTC 57.237 37.037 8.95 0.00 0.00 2.75
2574 2914 9.509956 AGAAGACATACGCTTAACTAGATATCT 57.490 33.333 10.73 10.73 0.00 1.98
2586 2926 9.712305 ATGCTTATTTATAGAAGACATACGCTT 57.288 29.630 0.00 0.00 0.00 4.68
2587 2927 9.360093 GATGCTTATTTATAGAAGACATACGCT 57.640 33.333 0.00 0.00 0.00 5.07
2588 2928 8.314635 CGATGCTTATTTATAGAAGACATACGC 58.685 37.037 0.00 0.00 0.00 4.42
2589 2929 8.799091 CCGATGCTTATTTATAGAAGACATACG 58.201 37.037 0.00 0.00 0.00 3.06
2590 2930 9.640963 ACCGATGCTTATTTATAGAAGACATAC 57.359 33.333 0.00 0.00 0.00 2.39
2591 2931 9.639601 CACCGATGCTTATTTATAGAAGACATA 57.360 33.333 0.00 0.00 0.00 2.29
2592 2932 8.539770 CACCGATGCTTATTTATAGAAGACAT 57.460 34.615 0.00 0.00 0.00 3.06
2593 2933 7.946655 CACCGATGCTTATTTATAGAAGACA 57.053 36.000 0.00 0.00 0.00 3.41
2615 2955 9.943163 GAAATAAATCCATCTTTCTCTAAGCAC 57.057 33.333 0.00 0.00 33.66 4.40
2630 2970 9.618890 CAGGAGATGTTTAGAGAAATAAATCCA 57.381 33.333 0.00 0.00 31.82 3.41
2643 2983 5.233050 CGTCATGCTTACAGGAGATGTTTAG 59.767 44.000 0.00 0.00 39.96 1.85
2645 2985 3.935203 CGTCATGCTTACAGGAGATGTTT 59.065 43.478 0.00 0.00 39.96 2.83
2663 3003 0.457853 GGATGTACGAGCAAGCGTCA 60.458 55.000 2.58 2.94 44.39 4.35
2666 3006 1.290203 ATTGGATGTACGAGCAAGCG 58.710 50.000 0.00 0.00 37.29 4.68
2667 3007 4.875544 TTTATTGGATGTACGAGCAAGC 57.124 40.909 0.00 0.00 0.00 4.01
2668 3008 8.612619 ACTTATTTTATTGGATGTACGAGCAAG 58.387 33.333 0.00 0.00 0.00 4.01
2670 3010 7.011950 CCACTTATTTTATTGGATGTACGAGCA 59.988 37.037 0.00 0.00 0.00 4.26
2681 3027 6.027749 GCTTGACGTCCACTTATTTTATTGG 58.972 40.000 14.12 0.00 0.00 3.16
2684 3030 4.331717 CCGCTTGACGTCCACTTATTTTAT 59.668 41.667 14.12 0.00 41.42 1.40
2714 3060 1.070289 GTTCCTCCAACGTTCTGGTCT 59.930 52.381 0.00 0.00 37.74 3.85
2716 3062 0.834612 TGTTCCTCCAACGTTCTGGT 59.165 50.000 0.00 0.00 37.90 4.00
2717 3063 1.070134 TCTGTTCCTCCAACGTTCTGG 59.930 52.381 0.00 0.00 37.90 3.86
2734 3080 9.837525 ACTTTATACTAACTTTGAGTACGTCTG 57.162 33.333 0.00 0.00 32.34 3.51
2743 3089 9.444600 GATGACCCAACTTTATACTAACTTTGA 57.555 33.333 0.00 0.00 0.00 2.69
2744 3090 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
2755 3101 8.293867 CGTTTCAAAATAGATGACCCAACTTTA 58.706 33.333 0.00 0.00 0.00 1.85
2756 3102 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
2757 3103 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
2758 3104 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
2759 3105 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
2760 3106 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
2761 3107 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
2762 3108 5.646360 TCTTCCGTTTCAAAATAGATGACCC 59.354 40.000 0.00 0.00 0.00 4.46
2763 3109 6.737254 TCTTCCGTTTCAAAATAGATGACC 57.263 37.500 0.00 0.00 0.00 4.02
2764 3110 7.807680 ACTTCTTCCGTTTCAAAATAGATGAC 58.192 34.615 0.00 0.00 0.00 3.06
2765 3111 7.979444 ACTTCTTCCGTTTCAAAATAGATGA 57.021 32.000 0.00 0.00 0.00 2.92
2766 3112 8.717821 TGTACTTCTTCCGTTTCAAAATAGATG 58.282 33.333 0.00 0.00 0.00 2.90
2767 3113 8.842358 TGTACTTCTTCCGTTTCAAAATAGAT 57.158 30.769 0.00 0.00 0.00 1.98
2768 3114 8.665643 TTGTACTTCTTCCGTTTCAAAATAGA 57.334 30.769 0.00 0.00 0.00 1.98
2769 3115 9.724839 TTTTGTACTTCTTCCGTTTCAAAATAG 57.275 29.630 0.00 0.00 31.65 1.73
2770 3116 9.505995 GTTTTGTACTTCTTCCGTTTCAAAATA 57.494 29.630 0.00 0.00 36.46 1.40
2771 3117 8.030106 TGTTTTGTACTTCTTCCGTTTCAAAAT 58.970 29.630 0.00 0.00 36.46 1.82
2772 3118 7.368833 TGTTTTGTACTTCTTCCGTTTCAAAA 58.631 30.769 0.00 0.00 33.31 2.44
2773 3119 6.910995 TGTTTTGTACTTCTTCCGTTTCAAA 58.089 32.000 0.00 0.00 0.00 2.69
2774 3120 6.372103 TCTGTTTTGTACTTCTTCCGTTTCAA 59.628 34.615 0.00 0.00 0.00 2.69
2775 3121 5.875910 TCTGTTTTGTACTTCTTCCGTTTCA 59.124 36.000 0.00 0.00 0.00 2.69
2776 3122 6.354039 TCTGTTTTGTACTTCTTCCGTTTC 57.646 37.500 0.00 0.00 0.00 2.78
2777 3123 6.766467 AGATCTGTTTTGTACTTCTTCCGTTT 59.234 34.615 0.00 0.00 0.00 3.60
2778 3124 6.289064 AGATCTGTTTTGTACTTCTTCCGTT 58.711 36.000 0.00 0.00 0.00 4.44
2779 3125 5.855045 AGATCTGTTTTGTACTTCTTCCGT 58.145 37.500 0.00 0.00 0.00 4.69
2780 3126 6.787085 AAGATCTGTTTTGTACTTCTTCCG 57.213 37.500 0.00 0.00 0.00 4.30
2782 3128 9.959775 CGATTAAGATCTGTTTTGTACTTCTTC 57.040 33.333 0.00 0.00 0.00 2.87
2783 3129 8.443937 GCGATTAAGATCTGTTTTGTACTTCTT 58.556 33.333 0.00 0.00 0.00 2.52
2784 3130 7.201444 CGCGATTAAGATCTGTTTTGTACTTCT 60.201 37.037 0.00 0.00 0.00 2.85
2785 3131 6.895040 CGCGATTAAGATCTGTTTTGTACTTC 59.105 38.462 0.00 0.00 0.00 3.01
2786 3132 6.672357 GCGCGATTAAGATCTGTTTTGTACTT 60.672 38.462 12.10 0.00 0.00 2.24
2787 3133 5.220416 GCGCGATTAAGATCTGTTTTGTACT 60.220 40.000 12.10 0.00 0.00 2.73
2788 3134 4.956184 GCGCGATTAAGATCTGTTTTGTAC 59.044 41.667 12.10 0.00 0.00 2.90
2789 3135 4.259650 CGCGCGATTAAGATCTGTTTTGTA 60.260 41.667 28.94 0.00 0.00 2.41
2790 3136 3.483574 CGCGCGATTAAGATCTGTTTTGT 60.484 43.478 28.94 0.00 0.00 2.83
2791 3137 3.022284 CGCGCGATTAAGATCTGTTTTG 58.978 45.455 28.94 0.00 0.00 2.44
2792 3138 2.536928 GCGCGCGATTAAGATCTGTTTT 60.537 45.455 37.18 0.00 0.00 2.43
2793 3139 1.004927 GCGCGCGATTAAGATCTGTTT 60.005 47.619 37.18 0.00 0.00 2.83
2794 3140 0.577269 GCGCGCGATTAAGATCTGTT 59.423 50.000 37.18 0.00 0.00 3.16
2795 3141 2.217112 GCGCGCGATTAAGATCTGT 58.783 52.632 37.18 0.00 0.00 3.41
2816 3162 1.256812 AACCCCTAACTTGCATGTGC 58.743 50.000 5.94 0.00 42.50 4.57
2817 3163 3.016736 CCTAACCCCTAACTTGCATGTG 58.983 50.000 5.94 0.00 0.00 3.21
2818 3164 2.916934 TCCTAACCCCTAACTTGCATGT 59.083 45.455 0.00 0.00 0.00 3.21
2819 3165 3.279434 GTCCTAACCCCTAACTTGCATG 58.721 50.000 0.00 0.00 0.00 4.06
2820 3166 2.916934 TGTCCTAACCCCTAACTTGCAT 59.083 45.455 0.00 0.00 0.00 3.96
2821 3167 2.340731 TGTCCTAACCCCTAACTTGCA 58.659 47.619 0.00 0.00 0.00 4.08
2822 3168 3.646736 ATGTCCTAACCCCTAACTTGC 57.353 47.619 0.00 0.00 0.00 4.01
2823 3169 6.598064 CAGTAAATGTCCTAACCCCTAACTTG 59.402 42.308 0.00 0.00 0.00 3.16
2824 3170 6.502863 TCAGTAAATGTCCTAACCCCTAACTT 59.497 38.462 0.00 0.00 0.00 2.66
2825 3171 6.027482 TCAGTAAATGTCCTAACCCCTAACT 58.973 40.000 0.00 0.00 0.00 2.24
2826 3172 6.303903 TCAGTAAATGTCCTAACCCCTAAC 57.696 41.667 0.00 0.00 0.00 2.34
2827 3173 8.626917 TTATCAGTAAATGTCCTAACCCCTAA 57.373 34.615 0.00 0.00 0.00 2.69
2828 3174 8.069356 TCTTATCAGTAAATGTCCTAACCCCTA 58.931 37.037 0.00 0.00 0.00 3.53
2829 3175 6.906901 TCTTATCAGTAAATGTCCTAACCCCT 59.093 38.462 0.00 0.00 0.00 4.79
2830 3176 6.990939 GTCTTATCAGTAAATGTCCTAACCCC 59.009 42.308 0.00 0.00 0.00 4.95
2831 3177 6.990939 GGTCTTATCAGTAAATGTCCTAACCC 59.009 42.308 0.00 0.00 0.00 4.11
2832 3178 7.562135 TGGTCTTATCAGTAAATGTCCTAACC 58.438 38.462 0.00 0.00 0.00 2.85
2836 3182 8.938883 ACATATGGTCTTATCAGTAAATGTCCT 58.061 33.333 7.80 0.00 0.00 3.85
2844 3190 9.657419 CATGCATTACATATGGTCTTATCAGTA 57.343 33.333 7.80 0.00 36.64 2.74
2845 3191 8.377799 TCATGCATTACATATGGTCTTATCAGT 58.622 33.333 7.80 0.00 36.64 3.41
2846 3192 8.782339 TCATGCATTACATATGGTCTTATCAG 57.218 34.615 7.80 0.00 36.64 2.90
2847 3193 9.169592 CATCATGCATTACATATGGTCTTATCA 57.830 33.333 7.80 0.00 36.64 2.15
2848 3194 8.127327 GCATCATGCATTACATATGGTCTTATC 58.873 37.037 4.20 0.00 44.26 1.75
2849 3195 7.993101 GCATCATGCATTACATATGGTCTTAT 58.007 34.615 4.20 0.00 44.26 1.73
2850 3196 7.381766 GCATCATGCATTACATATGGTCTTA 57.618 36.000 4.20 0.00 44.26 2.10
2851 3197 6.263516 GCATCATGCATTACATATGGTCTT 57.736 37.500 4.20 0.00 44.26 3.01
2852 3198 5.892160 GCATCATGCATTACATATGGTCT 57.108 39.130 4.20 0.00 44.26 3.85
2866 3212 3.749665 ACCTCTCTCTAAGCATCATGC 57.250 47.619 0.00 0.00 45.46 4.06
2867 3213 6.403866 AAGTACCTCTCTCTAAGCATCATG 57.596 41.667 0.00 0.00 0.00 3.07
2868 3214 6.382570 ACAAAGTACCTCTCTCTAAGCATCAT 59.617 38.462 0.00 0.00 0.00 2.45
2869 3215 5.717178 ACAAAGTACCTCTCTCTAAGCATCA 59.283 40.000 0.00 0.00 0.00 3.07
2870 3216 6.215495 ACAAAGTACCTCTCTCTAAGCATC 57.785 41.667 0.00 0.00 0.00 3.91
2871 3217 6.014156 ACAACAAAGTACCTCTCTCTAAGCAT 60.014 38.462 0.00 0.00 0.00 3.79
2872 3218 5.304614 ACAACAAAGTACCTCTCTCTAAGCA 59.695 40.000 0.00 0.00 0.00 3.91
2873 3219 5.635700 CACAACAAAGTACCTCTCTCTAAGC 59.364 44.000 0.00 0.00 0.00 3.09
2874 3220 6.750148 ACACAACAAAGTACCTCTCTCTAAG 58.250 40.000 0.00 0.00 0.00 2.18
2875 3221 6.726490 ACACAACAAAGTACCTCTCTCTAA 57.274 37.500 0.00 0.00 0.00 2.10
2876 3222 7.828508 TTACACAACAAAGTACCTCTCTCTA 57.171 36.000 0.00 0.00 0.00 2.43
2877 3223 6.726490 TTACACAACAAAGTACCTCTCTCT 57.274 37.500 0.00 0.00 0.00 3.10
2878 3224 7.709613 TCTTTTACACAACAAAGTACCTCTCTC 59.290 37.037 0.00 0.00 32.67 3.20
2879 3225 7.562135 TCTTTTACACAACAAAGTACCTCTCT 58.438 34.615 0.00 0.00 32.67 3.10
2880 3226 7.781548 TCTTTTACACAACAAAGTACCTCTC 57.218 36.000 0.00 0.00 32.67 3.20
2881 3227 8.570068 TTTCTTTTACACAACAAAGTACCTCT 57.430 30.769 0.00 0.00 32.67 3.69
2882 3228 9.797556 ATTTTCTTTTACACAACAAAGTACCTC 57.202 29.630 0.00 0.00 32.67 3.85
2901 3247 8.379902 CGTGTGCTTAAAAAGTTGAATTTTCTT 58.620 29.630 0.00 0.00 31.25 2.52
2902 3248 7.544217 ACGTGTGCTTAAAAAGTTGAATTTTCT 59.456 29.630 0.00 0.00 31.25 2.52
2903 3249 7.630606 CACGTGTGCTTAAAAAGTTGAATTTTC 59.369 33.333 7.58 0.00 31.25 2.29
2904 3250 7.117092 ACACGTGTGCTTAAAAAGTTGAATTTT 59.883 29.630 22.71 0.00 33.86 1.82
2905 3251 6.588373 ACACGTGTGCTTAAAAAGTTGAATTT 59.412 30.769 22.71 0.00 0.00 1.82
2906 3252 6.096695 ACACGTGTGCTTAAAAAGTTGAATT 58.903 32.000 22.71 0.00 0.00 2.17
2907 3253 5.646606 ACACGTGTGCTTAAAAAGTTGAAT 58.353 33.333 22.71 0.00 0.00 2.57
2908 3254 5.049398 ACACGTGTGCTTAAAAAGTTGAA 57.951 34.783 22.71 0.00 0.00 2.69
2909 3255 4.688511 ACACGTGTGCTTAAAAAGTTGA 57.311 36.364 22.71 0.00 0.00 3.18
2910 3256 5.537410 CAAACACGTGTGCTTAAAAAGTTG 58.463 37.500 24.16 14.38 0.00 3.16
2911 3257 4.090786 GCAAACACGTGTGCTTAAAAAGTT 59.909 37.500 24.16 5.48 37.78 2.66
2912 3258 3.610677 GCAAACACGTGTGCTTAAAAAGT 59.389 39.130 24.16 0.00 37.78 2.66
2913 3259 4.163475 GCAAACACGTGTGCTTAAAAAG 57.837 40.909 24.16 2.65 37.78 2.27
2921 3267 2.399396 ACATAAGCAAACACGTGTGC 57.601 45.000 24.16 21.85 41.22 4.57
2922 3268 4.725556 ACTACATAAGCAAACACGTGTG 57.274 40.909 24.16 12.14 0.00 3.82
2923 3269 5.775686 TCTACTACATAAGCAAACACGTGT 58.224 37.500 17.22 17.22 0.00 4.49
2924 3270 6.090783 TCTCTACTACATAAGCAAACACGTG 58.909 40.000 15.48 15.48 0.00 4.49
2925 3271 6.263516 TCTCTACTACATAAGCAAACACGT 57.736 37.500 0.00 0.00 0.00 4.49
2926 3272 7.154668 CATCTCTACTACATAAGCAAACACG 57.845 40.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.