Multiple sequence alignment - TraesCS2D01G267000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G267000 chr2D 100.000 5747 0 0 1 5747 326221604 326215858 0.000000e+00 10613.0
1 TraesCS2D01G267000 chr2D 96.716 609 18 1 5134 5742 408347664 408347058 0.000000e+00 1013.0
2 TraesCS2D01G267000 chr2D 96.711 608 17 2 5134 5741 375261534 375262138 0.000000e+00 1009.0
3 TraesCS2D01G267000 chr2D 85.399 589 66 12 4178 4758 643176751 643176175 1.380000e-165 593.0
4 TraesCS2D01G267000 chr2D 94.915 59 2 1 3139 3197 326218409 326218352 2.210000e-14 91.6
5 TraesCS2D01G267000 chr2D 94.915 59 2 1 3196 3253 326218466 326218408 2.210000e-14 91.6
6 TraesCS2D01G267000 chr2B 96.173 4050 119 20 1 4022 395545924 395541883 0.000000e+00 6588.0
7 TraesCS2D01G267000 chr2B 95.752 871 36 1 4124 4993 395541888 395541018 0.000000e+00 1402.0
8 TraesCS2D01G267000 chr2B 98.214 112 2 0 4021 4132 672018432 672018321 4.540000e-46 196.0
9 TraesCS2D01G267000 chr2B 95.312 64 3 0 4990 5053 321689839 321689902 1.020000e-17 102.0
10 TraesCS2D01G267000 chr2B 94.915 59 3 0 3140 3198 395542728 395542670 6.130000e-15 93.5
11 TraesCS2D01G267000 chr2A 95.244 4058 117 28 1 4022 391869367 391873384 0.000000e+00 6355.0
12 TraesCS2D01G267000 chr2A 95.886 875 31 4 4124 4994 391873379 391874252 0.000000e+00 1411.0
13 TraesCS2D01G267000 chr2A 96.667 120 3 1 4021 4140 256792767 256792649 1.260000e-46 198.0
14 TraesCS2D01G267000 chr2A 95.000 60 3 0 3196 3255 391872474 391872533 1.700000e-15 95.3
15 TraesCS2D01G267000 chr2A 96.429 56 2 0 3140 3195 391872532 391872587 6.130000e-15 93.5
16 TraesCS2D01G267000 chr1D 97.373 609 13 2 5134 5742 149533486 149532881 0.000000e+00 1033.0
17 TraesCS2D01G267000 chr1D 92.537 67 4 1 4988 5053 107175516 107175582 1.700000e-15 95.3
18 TraesCS2D01G267000 chrUn 97.044 609 16 1 5134 5742 147949007 147949613 0.000000e+00 1024.0
19 TraesCS2D01G267000 chrUn 98.246 114 1 1 4019 4132 94014508 94014620 1.260000e-46 198.0
20 TraesCS2D01G267000 chr7D 96.880 609 17 1 5134 5742 516070610 516070004 0.000000e+00 1018.0
21 TraesCS2D01G267000 chr7D 96.716 609 16 3 5134 5742 139938631 139939235 0.000000e+00 1011.0
22 TraesCS2D01G267000 chr7D 90.278 72 4 2 4991 5059 1033613 1033542 2.210000e-14 91.6
23 TraesCS2D01G267000 chr3D 96.552 609 18 2 5134 5742 388789571 388788966 0.000000e+00 1005.0
24 TraesCS2D01G267000 chr3D 96.388 609 16 3 5134 5742 2990132 2990734 0.000000e+00 998.0
25 TraesCS2D01G267000 chr4D 96.388 609 19 2 5134 5742 449741754 449741149 0.000000e+00 1000.0
26 TraesCS2D01G267000 chr7A 100.000 110 0 0 4021 4130 685837729 685837620 2.710000e-48 204.0
27 TraesCS2D01G267000 chr6A 98.261 115 2 0 4018 4132 579148209 579148323 9.760000e-48 202.0
28 TraesCS2D01G267000 chr6A 96.581 117 3 1 4021 4137 2971420 2971535 5.880000e-45 193.0
29 TraesCS2D01G267000 chr6A 92.424 132 8 2 4010 4141 478232714 478232843 2.730000e-43 187.0
30 TraesCS2D01G267000 chr3A 100.000 109 0 0 4021 4129 697472341 697472449 9.760000e-48 202.0
31 TraesCS2D01G267000 chr3A 98.230 113 2 0 4019 4131 588942335 588942223 1.260000e-46 198.0
32 TraesCS2D01G267000 chr7B 95.588 68 3 0 4986 5053 53250571 53250638 6.090000e-20 110.0
33 TraesCS2D01G267000 chr5B 90.541 74 5 2 4992 5063 370194706 370194779 4.740000e-16 97.1
34 TraesCS2D01G267000 chr5B 90.541 74 5 2 4992 5063 370239566 370239639 4.740000e-16 97.1
35 TraesCS2D01G267000 chr6D 92.424 66 5 0 4988 5053 44137849 44137784 1.700000e-15 95.3
36 TraesCS2D01G267000 chr1A 90.278 72 4 2 4988 5056 381297339 381297410 2.210000e-14 91.6
37 TraesCS2D01G267000 chr1A 91.045 67 4 2 4988 5053 109577141 109577206 7.930000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G267000 chr2D 326215858 326221604 5746 True 3598.733333 10613 96.610000 1 5747 3 chr2D.!!$R3 5746
1 TraesCS2D01G267000 chr2D 408347058 408347664 606 True 1013.000000 1013 96.716000 5134 5742 1 chr2D.!!$R1 608
2 TraesCS2D01G267000 chr2D 375261534 375262138 604 False 1009.000000 1009 96.711000 5134 5741 1 chr2D.!!$F1 607
3 TraesCS2D01G267000 chr2D 643176175 643176751 576 True 593.000000 593 85.399000 4178 4758 1 chr2D.!!$R2 580
4 TraesCS2D01G267000 chr2B 395541018 395545924 4906 True 2694.500000 6588 95.613333 1 4993 3 chr2B.!!$R2 4992
5 TraesCS2D01G267000 chr2A 391869367 391874252 4885 False 1988.700000 6355 95.639750 1 4994 4 chr2A.!!$F1 4993
6 TraesCS2D01G267000 chr1D 149532881 149533486 605 True 1033.000000 1033 97.373000 5134 5742 1 chr1D.!!$R1 608
7 TraesCS2D01G267000 chrUn 147949007 147949613 606 False 1024.000000 1024 97.044000 5134 5742 1 chrUn.!!$F2 608
8 TraesCS2D01G267000 chr7D 516070004 516070610 606 True 1018.000000 1018 96.880000 5134 5742 1 chr7D.!!$R2 608
9 TraesCS2D01G267000 chr7D 139938631 139939235 604 False 1011.000000 1011 96.716000 5134 5742 1 chr7D.!!$F1 608
10 TraesCS2D01G267000 chr3D 388788966 388789571 605 True 1005.000000 1005 96.552000 5134 5742 1 chr3D.!!$R1 608
11 TraesCS2D01G267000 chr3D 2990132 2990734 602 False 998.000000 998 96.388000 5134 5742 1 chr3D.!!$F1 608
12 TraesCS2D01G267000 chr4D 449741149 449741754 605 True 1000.000000 1000 96.388000 5134 5742 1 chr4D.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.178992 TGGTGGCTGAAAGGGTTCTG 60.179 55.000 0.00 0.0 36.16 3.02 F
1099 1101 0.242825 CGAGAAGCACGGGTAAGTCA 59.757 55.000 0.00 0.0 0.00 3.41 F
1321 1325 0.541863 CTTGGGAGGATGGCTACGTT 59.458 55.000 0.00 0.0 0.00 3.99 F
1885 1891 1.539388 TGGCTAACGTGGCAATTCTTG 59.461 47.619 14.24 0.0 39.58 3.02 F
2864 2871 0.518636 CACACATGTGGCAGCACTAC 59.481 55.000 28.64 0.0 42.10 2.73 F
4176 4216 1.241165 CACAATGTGCTTCTGCCTGA 58.759 50.000 0.00 0.0 38.71 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 2063 0.108019 GAACTGGAACTGGAACCCGT 59.892 55.000 0.00 0.00 0.00 5.28 R
2422 2429 0.104855 TCCACCGATACATCTGCAGC 59.895 55.000 9.47 0.00 0.00 5.25 R
2689 2696 1.909986 TGTCATATCCGGGTTGACCAA 59.090 47.619 20.33 6.72 39.17 3.67 R
3847 3863 0.326264 AGCCTGCTGGGAAGTAACAG 59.674 55.000 12.06 0.00 37.23 3.16 R
4496 4536 0.318120 TGAACAGATGCGCAGTCTCA 59.682 50.000 18.32 11.07 0.00 3.27 R
5081 5130 0.248843 TTGAAATTGAATGCCCCCGC 59.751 50.000 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 0.178992 TGGTGGCTGAAAGGGTTCTG 60.179 55.000 0.00 0.00 36.16 3.02
160 161 2.034221 GGCCCGCCTCAAACTCTT 59.966 61.111 0.00 0.00 0.00 2.85
182 183 2.795110 GGCACCTGCTTGTTTGGCA 61.795 57.895 0.00 0.00 41.70 4.92
241 242 6.467677 ACGGATTCATCATATTCCAGTAAGG 58.532 40.000 0.00 0.00 39.47 2.69
445 447 6.692849 TGGTTAGCTTCCATATCTCATGAT 57.307 37.500 0.00 0.00 36.74 2.45
484 486 7.825331 ATGTACTAGTTAGAGAGCATAAGCA 57.175 36.000 0.00 0.00 45.49 3.91
503 505 9.021807 CATAAGCAGATCATCTATTTTCCCAAT 57.978 33.333 0.00 0.00 0.00 3.16
549 551 5.288543 TCTCCTACGTTTCTCGAAGTAAC 57.711 43.478 0.00 0.00 42.86 2.50
627 629 6.483307 TCATGTTCTTGTGTTCAGGTCTTTAG 59.517 38.462 0.00 0.00 0.00 1.85
628 630 5.123227 TGTTCTTGTGTTCAGGTCTTTAGG 58.877 41.667 0.00 0.00 0.00 2.69
788 790 1.531365 CAAAGGGAAGGCCTGCACA 60.531 57.895 17.83 0.00 0.00 4.57
1099 1101 0.242825 CGAGAAGCACGGGTAAGTCA 59.757 55.000 0.00 0.00 0.00 3.41
1321 1325 0.541863 CTTGGGAGGATGGCTACGTT 59.458 55.000 0.00 0.00 0.00 3.99
1392 1396 8.758829 TGATAGTGACAACCAGATAATAACACT 58.241 33.333 0.00 0.00 39.03 3.55
1453 1457 2.191513 CCCCATCGAGGCAGCATTG 61.192 63.158 0.00 0.00 35.39 2.82
1605 1609 1.762708 AAAGTGGCCATTATGGGACG 58.237 50.000 9.72 0.00 39.59 4.79
1671 1675 7.041848 GGTGTACAAGGTGAACTAAATTTACGT 60.042 37.037 0.00 0.00 0.00 3.57
1729 1735 9.630098 CATAGCACTTTAAGTGATTTCACAAAT 57.370 29.630 26.94 7.86 43.03 2.32
1761 1767 2.164422 TCAGTATCACGAAGACTGGCAG 59.836 50.000 14.16 14.16 40.81 4.85
1767 1773 1.939934 CACGAAGACTGGCAGTTTCAA 59.060 47.619 22.98 0.00 0.00 2.69
1782 1788 4.753107 CAGTTTCAATTTGCAGCAGGAATT 59.247 37.500 0.00 0.00 0.00 2.17
1789 1795 7.090173 TCAATTTGCAGCAGGAATTAAAGTAC 58.910 34.615 4.98 0.00 0.00 2.73
1857 1863 2.093816 TGTGTTCAACCAGCAAATGCAA 60.094 40.909 8.28 0.00 45.16 4.08
1885 1891 1.539388 TGGCTAACGTGGCAATTCTTG 59.461 47.619 14.24 0.00 39.58 3.02
1971 1977 9.561069 GGATCTTTATGTATGGTATGTTCAGTT 57.439 33.333 0.00 0.00 0.00 3.16
2098 2105 7.177392 AGTTCCATTTCTAGAATGAAACCAAGG 59.823 37.037 5.89 0.00 38.54 3.61
2127 2134 1.751927 CCTCCCCAGCAGCATTGTC 60.752 63.158 0.00 0.00 0.00 3.18
2135 2142 2.422519 CCAGCAGCATTGTCTAGGGAAT 60.423 50.000 0.00 0.00 0.00 3.01
2184 2191 5.721876 ATTGTGTGCAAAAACAACATCAG 57.278 34.783 11.74 0.00 39.00 2.90
2395 2402 1.672356 CCTTCAGCCACAGGGTTCG 60.672 63.158 0.00 0.00 36.17 3.95
2584 2591 3.699538 AGATGTCATTACAGGAGCGTACA 59.300 43.478 0.00 0.00 39.49 2.90
2587 2594 4.180817 TGTCATTACAGGAGCGTACAATG 58.819 43.478 0.00 0.00 0.00 2.82
2653 2660 4.532126 AGAGTGATCTGTGGACCAATGTTA 59.468 41.667 0.00 0.00 0.00 2.41
2689 2696 3.181462 TGAACTCACTCACTGCAAGACAT 60.181 43.478 0.00 0.00 37.43 3.06
2695 2702 2.158769 ACTCACTGCAAGACATTGGTCA 60.159 45.455 0.00 0.00 46.80 4.02
2703 2710 0.991920 AGACATTGGTCAACCCGGAT 59.008 50.000 0.73 0.00 46.80 4.18
2863 2870 1.236616 GCACACATGTGGCAGCACTA 61.237 55.000 28.64 0.00 45.72 2.74
2864 2871 0.518636 CACACATGTGGCAGCACTAC 59.481 55.000 28.64 0.00 42.10 2.73
2931 2938 6.263842 ACTCAAAGATGCACAAAGATCTTGAA 59.736 34.615 9.17 0.00 38.62 2.69
2942 2949 5.305128 ACAAAGATCTTGAAGCAATTCCCAA 59.695 36.000 9.17 0.00 0.00 4.12
3122 3129 5.258051 GGTTGGTGATATCCCAAACAGTTA 58.742 41.667 24.72 5.68 46.77 2.24
3134 3141 5.011329 TCCCAAACAGTTACTCGTATCACTT 59.989 40.000 0.00 0.00 0.00 3.16
3195 3202 4.019501 AGAGAAGATCATGCACTGAGGTTT 60.020 41.667 0.00 0.00 37.28 3.27
3213 3220 5.308825 AGGTTTGATTCTTCGACTTCATGT 58.691 37.500 0.00 0.00 0.00 3.21
3215 3222 5.179368 GGTTTGATTCTTCGACTTCATGTGA 59.821 40.000 0.00 0.00 0.00 3.58
3249 3256 4.025360 AGAGAGAAGATCATGCACTGAGT 58.975 43.478 0.00 0.00 37.28 3.41
3262 3269 2.612972 GCACTGAGTTTGGAGGAATCGA 60.613 50.000 0.00 0.00 0.00 3.59
3278 3285 1.414158 TCGACAATCCCAGATCCCTC 58.586 55.000 0.00 0.00 0.00 4.30
3351 3358 2.270352 AAATGACTGTTTCGCTCCCA 57.730 45.000 0.00 0.00 0.00 4.37
3546 3553 3.499338 TCCAAATGCATCAAAGGTCTGT 58.501 40.909 0.00 0.00 0.00 3.41
3550 3557 4.778534 AATGCATCAAAGGTCTGTCTTG 57.221 40.909 0.00 0.00 0.00 3.02
3563 3570 7.726033 AGGTCTGTCTTGTGAGTTCTAATAT 57.274 36.000 0.00 0.00 0.00 1.28
3601 3611 7.541437 CCTTTTCAATTGTGTTTGTTTGCAAAT 59.459 29.630 16.21 0.00 45.11 2.32
3630 3640 5.416639 AGTGCATTGATTGTATCTTCTTGCA 59.583 36.000 0.00 0.00 0.00 4.08
3631 3641 6.071784 AGTGCATTGATTGTATCTTCTTGCAA 60.072 34.615 0.00 0.00 0.00 4.08
3699 3709 4.654091 AATGTTGTTCCTCCAAAGTGTG 57.346 40.909 0.00 0.00 0.00 3.82
3702 3712 3.279434 GTTGTTCCTCCAAAGTGTGTCT 58.721 45.455 0.00 0.00 0.00 3.41
3736 3746 4.039609 AGAAGGTGGGCTTCTTCAAATTTG 59.960 41.667 12.15 12.15 41.16 2.32
3746 3756 7.092716 GGCTTCTTCAAATTTGTGTGTGATAT 58.907 34.615 17.47 0.00 0.00 1.63
3766 3776 9.696917 GTGATATTGAAAATTCAGAAACCAACT 57.303 29.630 0.00 0.00 38.61 3.16
3827 3843 8.435430 TCATCGAATTCGTTTTCATATCATAGC 58.565 33.333 25.93 0.00 40.80 2.97
3847 3863 5.637006 AGCGAATACTCATCATAGGACTC 57.363 43.478 0.00 0.00 0.00 3.36
3880 3899 2.703007 AGCAGGCTACCTAAAGATCTGG 59.297 50.000 0.00 0.00 29.64 3.86
3883 3902 1.270358 GGCTACCTAAAGATCTGGCCG 60.270 57.143 0.00 0.00 0.00 6.13
4022 4062 6.227298 TCCTGTCTTCATTTCCTGAGATAC 57.773 41.667 0.00 0.00 34.68 2.24
4023 4063 5.960811 TCCTGTCTTCATTTCCTGAGATACT 59.039 40.000 0.00 0.00 34.68 2.12
4024 4064 6.097554 TCCTGTCTTCATTTCCTGAGATACTC 59.902 42.308 0.00 0.00 34.68 2.59
4025 4065 6.227298 TGTCTTCATTTCCTGAGATACTCC 57.773 41.667 0.00 0.00 34.68 3.85
4026 4066 5.129485 TGTCTTCATTTCCTGAGATACTCCC 59.871 44.000 0.00 0.00 34.68 4.30
4027 4067 5.365314 GTCTTCATTTCCTGAGATACTCCCT 59.635 44.000 0.00 0.00 34.68 4.20
4028 4068 5.600484 TCTTCATTTCCTGAGATACTCCCTC 59.400 44.000 0.00 0.00 34.68 4.30
4029 4069 5.149584 TCATTTCCTGAGATACTCCCTCT 57.850 43.478 0.00 0.00 0.00 3.69
4030 4070 4.898265 TCATTTCCTGAGATACTCCCTCTG 59.102 45.833 0.00 0.00 0.00 3.35
4031 4071 4.338795 TTTCCTGAGATACTCCCTCTGT 57.661 45.455 0.00 0.00 0.00 3.41
4032 4072 4.338795 TTCCTGAGATACTCCCTCTGTT 57.661 45.455 0.00 0.00 0.00 3.16
4033 4073 3.904717 TCCTGAGATACTCCCTCTGTTC 58.095 50.000 0.00 0.00 0.00 3.18
4034 4074 3.269643 TCCTGAGATACTCCCTCTGTTCA 59.730 47.826 0.00 0.00 0.00 3.18
4035 4075 3.383185 CCTGAGATACTCCCTCTGTTCAC 59.617 52.174 0.00 0.00 0.00 3.18
4036 4076 4.277476 CTGAGATACTCCCTCTGTTCACT 58.723 47.826 0.00 0.00 0.00 3.41
4037 4077 4.678256 TGAGATACTCCCTCTGTTCACTT 58.322 43.478 0.00 0.00 0.00 3.16
4038 4078 5.087323 TGAGATACTCCCTCTGTTCACTTT 58.913 41.667 0.00 0.00 0.00 2.66
4039 4079 5.544176 TGAGATACTCCCTCTGTTCACTTTT 59.456 40.000 0.00 0.00 0.00 2.27
4040 4080 6.724441 TGAGATACTCCCTCTGTTCACTTTTA 59.276 38.462 0.00 0.00 0.00 1.52
4041 4081 7.400339 TGAGATACTCCCTCTGTTCACTTTTAT 59.600 37.037 0.00 0.00 0.00 1.40
4042 4082 8.840200 AGATACTCCCTCTGTTCACTTTTATA 57.160 34.615 0.00 0.00 0.00 0.98
4043 4083 9.268282 AGATACTCCCTCTGTTCACTTTTATAA 57.732 33.333 0.00 0.00 0.00 0.98
4044 4084 9.535878 GATACTCCCTCTGTTCACTTTTATAAG 57.464 37.037 0.00 0.00 37.40 1.73
4045 4085 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
4046 4086 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
4047 4087 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
4048 4088 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
4049 4089 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
4050 4090 7.119846 CCCTCTGTTCACTTTTATAAGACCTTG 59.880 40.741 0.00 0.00 35.30 3.61
4051 4091 7.878127 CCTCTGTTCACTTTTATAAGACCTTGA 59.122 37.037 0.00 0.00 35.30 3.02
4052 4092 9.273016 CTCTGTTCACTTTTATAAGACCTTGAA 57.727 33.333 0.00 0.00 35.30 2.69
4053 4093 9.273016 TCTGTTCACTTTTATAAGACCTTGAAG 57.727 33.333 0.00 0.00 35.30 3.02
4054 4094 9.273016 CTGTTCACTTTTATAAGACCTTGAAGA 57.727 33.333 0.00 0.00 35.30 2.87
4055 4095 9.052759 TGTTCACTTTTATAAGACCTTGAAGAC 57.947 33.333 0.00 0.00 35.30 3.01
4056 4096 9.052759 GTTCACTTTTATAAGACCTTGAAGACA 57.947 33.333 0.00 0.00 35.30 3.41
4057 4097 9.793259 TTCACTTTTATAAGACCTTGAAGACAT 57.207 29.630 0.00 0.00 35.30 3.06
4058 4098 9.793259 TCACTTTTATAAGACCTTGAAGACATT 57.207 29.630 0.00 0.00 35.30 2.71
4064 4104 7.913674 ATAAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
4065 4105 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
4066 4106 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
4067 4107 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
4068 4108 6.206243 AGACCTTGAAGACATTTCAGACAATG 59.794 38.462 0.00 0.00 39.67 2.82
4070 4110 6.998074 ACCTTGAAGACATTTCAGACAATGTA 59.002 34.615 9.58 0.00 45.55 2.29
4071 4111 7.041098 ACCTTGAAGACATTTCAGACAATGTAC 60.041 37.037 9.58 0.00 45.55 2.90
4072 4112 7.041167 CCTTGAAGACATTTCAGACAATGTACA 60.041 37.037 0.00 0.00 45.55 2.90
4073 4113 7.800155 TGAAGACATTTCAGACAATGTACAA 57.200 32.000 0.00 0.00 45.55 2.41
4074 4114 8.219546 TGAAGACATTTCAGACAATGTACAAA 57.780 30.769 0.00 0.00 45.55 2.83
4075 4115 8.681806 TGAAGACATTTCAGACAATGTACAAAA 58.318 29.630 0.00 0.00 45.55 2.44
4076 4116 8.856490 AAGACATTTCAGACAATGTACAAAAC 57.144 30.769 0.00 0.00 45.55 2.43
4077 4117 7.995289 AGACATTTCAGACAATGTACAAAACA 58.005 30.769 0.00 0.00 45.55 2.83
4078 4118 8.131100 AGACATTTCAGACAATGTACAAAACAG 58.869 33.333 0.00 0.00 45.55 3.16
4079 4119 6.697019 ACATTTCAGACAATGTACAAAACAGC 59.303 34.615 0.00 0.00 44.08 4.40
4080 4120 4.829064 TCAGACAATGTACAAAACAGCC 57.171 40.909 0.00 0.00 42.70 4.85
4081 4121 3.568007 TCAGACAATGTACAAAACAGCCC 59.432 43.478 0.00 0.00 42.70 5.19
4082 4122 3.317711 CAGACAATGTACAAAACAGCCCA 59.682 43.478 0.00 0.00 42.70 5.36
4083 4123 4.022068 CAGACAATGTACAAAACAGCCCAT 60.022 41.667 0.00 0.00 42.70 4.00
4084 4124 4.588528 AGACAATGTACAAAACAGCCCATT 59.411 37.500 0.00 0.00 42.70 3.16
4085 4125 5.070313 AGACAATGTACAAAACAGCCCATTT 59.930 36.000 0.00 0.00 42.70 2.32
4086 4126 5.679601 ACAATGTACAAAACAGCCCATTTT 58.320 33.333 0.00 0.00 42.70 1.82
4088 4128 5.543507 ATGTACAAAACAGCCCATTTTGA 57.456 34.783 19.09 3.50 45.75 2.69
4089 4129 4.942852 TGTACAAAACAGCCCATTTTGAG 58.057 39.130 19.09 1.00 45.75 3.02
4090 4130 4.404073 TGTACAAAACAGCCCATTTTGAGT 59.596 37.500 19.09 5.72 45.75 3.41
4091 4131 4.486125 ACAAAACAGCCCATTTTGAGTT 57.514 36.364 19.09 0.99 45.75 3.01
4092 4132 4.190772 ACAAAACAGCCCATTTTGAGTTG 58.809 39.130 19.09 6.15 45.75 3.16
4093 4133 4.190772 CAAAACAGCCCATTTTGAGTTGT 58.809 39.130 10.61 0.00 45.75 3.32
4094 4134 3.733443 AACAGCCCATTTTGAGTTGTC 57.267 42.857 0.00 0.00 0.00 3.18
4095 4135 2.949447 ACAGCCCATTTTGAGTTGTCT 58.051 42.857 0.00 0.00 0.00 3.41
4096 4136 2.624838 ACAGCCCATTTTGAGTTGTCTG 59.375 45.455 0.00 0.00 0.00 3.51
4097 4137 2.886523 CAGCCCATTTTGAGTTGTCTGA 59.113 45.455 0.00 0.00 0.00 3.27
4098 4138 3.318839 CAGCCCATTTTGAGTTGTCTGAA 59.681 43.478 0.00 0.00 0.00 3.02
4099 4139 3.960102 AGCCCATTTTGAGTTGTCTGAAA 59.040 39.130 0.00 0.00 0.00 2.69
4100 4140 4.590222 AGCCCATTTTGAGTTGTCTGAAAT 59.410 37.500 0.00 0.00 0.00 2.17
4101 4141 4.687483 GCCCATTTTGAGTTGTCTGAAATG 59.313 41.667 0.00 0.00 37.04 2.32
4102 4142 5.509501 GCCCATTTTGAGTTGTCTGAAATGA 60.510 40.000 8.27 0.00 38.18 2.57
4103 4143 5.922544 CCCATTTTGAGTTGTCTGAAATGAC 59.077 40.000 8.27 0.00 38.18 3.06
4104 4144 6.239120 CCCATTTTGAGTTGTCTGAAATGACT 60.239 38.462 8.27 0.00 38.18 3.41
4105 4145 7.205297 CCATTTTGAGTTGTCTGAAATGACTT 58.795 34.615 8.27 0.00 38.18 3.01
4106 4146 8.352201 CCATTTTGAGTTGTCTGAAATGACTTA 58.648 33.333 8.27 0.00 38.18 2.24
4107 4147 9.173939 CATTTTGAGTTGTCTGAAATGACTTAC 57.826 33.333 0.00 0.00 38.18 2.34
4108 4148 7.857734 TTTGAGTTGTCTGAAATGACTTACA 57.142 32.000 0.00 0.00 37.79 2.41
4109 4149 7.857734 TTGAGTTGTCTGAAATGACTTACAA 57.142 32.000 0.00 0.00 37.79 2.41
4110 4150 7.857734 TGAGTTGTCTGAAATGACTTACAAA 57.142 32.000 0.00 0.00 37.79 2.83
4111 4151 8.275015 TGAGTTGTCTGAAATGACTTACAAAA 57.725 30.769 0.00 0.00 37.79 2.44
4112 4152 8.397906 TGAGTTGTCTGAAATGACTTACAAAAG 58.602 33.333 0.00 0.00 37.79 2.27
4114 4154 8.184192 AGTTGTCTGAAATGACTTACAAAAGTG 58.816 33.333 0.00 0.00 46.09 3.16
4115 4155 7.857734 TGTCTGAAATGACTTACAAAAGTGA 57.142 32.000 0.00 0.00 46.09 3.41
4116 4156 8.275015 TGTCTGAAATGACTTACAAAAGTGAA 57.725 30.769 0.00 0.00 46.09 3.18
4117 4157 8.181573 TGTCTGAAATGACTTACAAAAGTGAAC 58.818 33.333 0.00 0.00 46.09 3.18
4118 4158 7.373441 GTCTGAAATGACTTACAAAAGTGAACG 59.627 37.037 0.00 0.00 46.09 3.95
4119 4159 6.491394 TGAAATGACTTACAAAAGTGAACGG 58.509 36.000 0.00 0.00 46.09 4.44
4120 4160 6.316640 TGAAATGACTTACAAAAGTGAACGGA 59.683 34.615 0.00 0.00 46.09 4.69
4121 4161 5.924475 ATGACTTACAAAAGTGAACGGAG 57.076 39.130 0.00 0.00 46.09 4.63
4122 4162 4.124238 TGACTTACAAAAGTGAACGGAGG 58.876 43.478 0.00 0.00 46.09 4.30
4123 4163 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
4124 4164 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
4125 4165 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
4126 4166 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
4127 4167 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
4168 4208 9.461312 TCTTAATCTATAAACCACAATGTGCTT 57.539 29.630 8.05 6.06 31.34 3.91
4169 4209 9.722056 CTTAATCTATAAACCACAATGTGCTTC 57.278 33.333 8.05 0.00 31.34 3.86
4176 4216 1.241165 CACAATGTGCTTCTGCCTGA 58.759 50.000 0.00 0.00 38.71 3.86
4380 4420 4.187694 GTCATCTTCTCATTGAGGTCACC 58.812 47.826 13.59 0.00 0.00 4.02
4564 4604 0.174389 GAGCTGGAGCATCGTTCTGA 59.826 55.000 0.00 0.00 45.16 3.27
4649 4689 1.412387 GACCAGTCACGTACGTTTCC 58.588 55.000 20.23 9.35 0.00 3.13
4755 4801 3.201487 TGCAGAGGAGATGATTCCATTGT 59.799 43.478 0.00 0.00 39.84 2.71
4820 4866 5.396484 CCATTTCAATAAGAGTGTGCAGTG 58.604 41.667 0.00 0.00 0.00 3.66
4997 5046 7.133133 TGAAAGATGACTATAAACTACCCCC 57.867 40.000 0.00 0.00 0.00 5.40
4998 5047 6.906901 TGAAAGATGACTATAAACTACCCCCT 59.093 38.462 0.00 0.00 0.00 4.79
4999 5048 6.997942 AAGATGACTATAAACTACCCCCTC 57.002 41.667 0.00 0.00 0.00 4.30
5000 5049 6.296435 AGATGACTATAAACTACCCCCTCT 57.704 41.667 0.00 0.00 0.00 3.69
5001 5050 6.078664 AGATGACTATAAACTACCCCCTCTG 58.921 44.000 0.00 0.00 0.00 3.35
5002 5051 5.216665 TGACTATAAACTACCCCCTCTGT 57.783 43.478 0.00 0.00 0.00 3.41
5003 5052 5.596763 TGACTATAAACTACCCCCTCTGTT 58.403 41.667 0.00 0.00 0.00 3.16
5004 5053 5.659971 TGACTATAAACTACCCCCTCTGTTC 59.340 44.000 0.00 0.00 0.00 3.18
5005 5054 4.967442 ACTATAAACTACCCCCTCTGTTCC 59.033 45.833 0.00 0.00 0.00 3.62
5006 5055 2.127651 AAACTACCCCCTCTGTTCCA 57.872 50.000 0.00 0.00 0.00 3.53
5007 5056 2.361085 AACTACCCCCTCTGTTCCAT 57.639 50.000 0.00 0.00 0.00 3.41
5008 5057 3.502051 AACTACCCCCTCTGTTCCATA 57.498 47.619 0.00 0.00 0.00 2.74
5009 5058 3.502051 ACTACCCCCTCTGTTCCATAA 57.498 47.619 0.00 0.00 0.00 1.90
5010 5059 4.022359 ACTACCCCCTCTGTTCCATAAT 57.978 45.455 0.00 0.00 0.00 1.28
5011 5060 3.716872 ACTACCCCCTCTGTTCCATAATG 59.283 47.826 0.00 0.00 0.00 1.90
5012 5061 2.573463 ACCCCCTCTGTTCCATAATGT 58.427 47.619 0.00 0.00 0.00 2.71
5013 5062 3.743132 ACCCCCTCTGTTCCATAATGTA 58.257 45.455 0.00 0.00 0.00 2.29
5014 5063 4.116113 ACCCCCTCTGTTCCATAATGTAA 58.884 43.478 0.00 0.00 0.00 2.41
5015 5064 4.166144 ACCCCCTCTGTTCCATAATGTAAG 59.834 45.833 0.00 0.00 0.00 2.34
5016 5065 4.412199 CCCCCTCTGTTCCATAATGTAAGA 59.588 45.833 0.00 0.00 0.00 2.10
5017 5066 5.368989 CCCCTCTGTTCCATAATGTAAGAC 58.631 45.833 0.00 0.00 0.00 3.01
5018 5067 5.050490 CCCTCTGTTCCATAATGTAAGACG 58.950 45.833 0.00 0.00 0.00 4.18
5019 5068 5.395324 CCCTCTGTTCCATAATGTAAGACGT 60.395 44.000 0.00 0.00 0.00 4.34
5020 5069 6.106673 CCTCTGTTCCATAATGTAAGACGTT 58.893 40.000 0.00 0.00 0.00 3.99
5021 5070 6.594159 CCTCTGTTCCATAATGTAAGACGTTT 59.406 38.462 0.00 0.00 0.00 3.60
5022 5071 7.119262 CCTCTGTTCCATAATGTAAGACGTTTT 59.881 37.037 0.00 0.00 0.00 2.43
5023 5072 8.385898 TCTGTTCCATAATGTAAGACGTTTTT 57.614 30.769 0.00 0.00 0.00 1.94
5044 5093 7.795482 TTTTTGACACTATATTATGGGACGG 57.205 36.000 0.00 0.00 0.00 4.79
5045 5094 6.734502 TTTGACACTATATTATGGGACGGA 57.265 37.500 0.00 0.00 0.00 4.69
5046 5095 5.977489 TGACACTATATTATGGGACGGAG 57.023 43.478 0.00 0.00 0.00 4.63
5047 5096 4.770531 TGACACTATATTATGGGACGGAGG 59.229 45.833 0.00 0.00 0.00 4.30
5048 5097 4.094476 ACACTATATTATGGGACGGAGGG 58.906 47.826 0.00 0.00 0.00 4.30
5049 5098 4.202749 ACACTATATTATGGGACGGAGGGA 60.203 45.833 0.00 0.00 0.00 4.20
5050 5099 4.402793 CACTATATTATGGGACGGAGGGAG 59.597 50.000 0.00 0.00 0.00 4.30
5051 5100 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5052 5101 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
5053 5102 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
5054 5103 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
5055 5104 0.338814 ATGGGACGGAGGGAGTACTT 59.661 55.000 0.00 0.00 0.00 2.24
5056 5105 0.613853 TGGGACGGAGGGAGTACTTG 60.614 60.000 0.00 0.00 0.00 3.16
5057 5106 0.614134 GGGACGGAGGGAGTACTTGT 60.614 60.000 0.00 0.00 0.00 3.16
5058 5107 1.264295 GGACGGAGGGAGTACTTGTT 58.736 55.000 0.00 0.00 0.00 2.83
5059 5108 1.204231 GGACGGAGGGAGTACTTGTTC 59.796 57.143 0.00 0.00 0.00 3.18
5060 5109 1.891150 GACGGAGGGAGTACTTGTTCA 59.109 52.381 0.00 0.00 0.00 3.18
5061 5110 2.496470 GACGGAGGGAGTACTTGTTCAT 59.504 50.000 0.00 0.00 0.00 2.57
5062 5111 2.904434 ACGGAGGGAGTACTTGTTCATT 59.096 45.455 0.00 0.00 0.00 2.57
5063 5112 3.056035 ACGGAGGGAGTACTTGTTCATTC 60.056 47.826 0.00 0.00 0.00 2.67
5064 5113 3.522553 GGAGGGAGTACTTGTTCATTCG 58.477 50.000 0.00 0.00 0.00 3.34
5065 5114 3.194968 GGAGGGAGTACTTGTTCATTCGA 59.805 47.826 0.00 0.00 0.00 3.71
5066 5115 4.141914 GGAGGGAGTACTTGTTCATTCGAT 60.142 45.833 0.00 0.00 0.00 3.59
5067 5116 5.420409 GAGGGAGTACTTGTTCATTCGATT 58.580 41.667 0.00 0.00 0.00 3.34
5068 5117 5.805728 AGGGAGTACTTGTTCATTCGATTT 58.194 37.500 0.00 0.00 0.00 2.17
5069 5118 6.238648 AGGGAGTACTTGTTCATTCGATTTT 58.761 36.000 0.00 0.00 0.00 1.82
5070 5119 7.391620 AGGGAGTACTTGTTCATTCGATTTTA 58.608 34.615 0.00 0.00 0.00 1.52
5071 5120 7.881232 AGGGAGTACTTGTTCATTCGATTTTAA 59.119 33.333 0.00 0.00 0.00 1.52
5072 5121 8.508875 GGGAGTACTTGTTCATTCGATTTTAAA 58.491 33.333 0.00 0.00 0.00 1.52
5073 5122 9.887406 GGAGTACTTGTTCATTCGATTTTAAAA 57.113 29.630 2.51 2.51 0.00 1.52
5092 5141 3.549412 AAAAATTGCGGGGGCATTC 57.451 47.368 0.00 0.00 0.00 2.67
5093 5142 0.689623 AAAAATTGCGGGGGCATTCA 59.310 45.000 0.00 0.00 0.00 2.57
5094 5143 0.689623 AAAATTGCGGGGGCATTCAA 59.310 45.000 0.00 0.00 0.00 2.69
5095 5144 0.911053 AAATTGCGGGGGCATTCAAT 59.089 45.000 0.00 0.00 0.00 2.57
5096 5145 0.911053 AATTGCGGGGGCATTCAATT 59.089 45.000 0.00 0.00 35.16 2.32
5097 5146 0.911053 ATTGCGGGGGCATTCAATTT 59.089 45.000 0.00 0.00 0.00 1.82
5098 5147 0.248843 TTGCGGGGGCATTCAATTTC 59.751 50.000 0.00 0.00 0.00 2.17
5099 5148 0.902048 TGCGGGGGCATTCAATTTCA 60.902 50.000 0.00 0.00 0.00 2.69
5100 5149 0.248843 GCGGGGGCATTCAATTTCAA 59.751 50.000 0.00 0.00 0.00 2.69
5101 5150 1.740043 GCGGGGGCATTCAATTTCAAG 60.740 52.381 0.00 0.00 0.00 3.02
5102 5151 1.824230 CGGGGGCATTCAATTTCAAGA 59.176 47.619 0.00 0.00 0.00 3.02
5103 5152 2.417243 CGGGGGCATTCAATTTCAAGAC 60.417 50.000 0.00 0.00 0.00 3.01
5104 5153 2.566724 GGGGGCATTCAATTTCAAGACA 59.433 45.455 0.00 0.00 0.00 3.41
5105 5154 3.007831 GGGGGCATTCAATTTCAAGACAA 59.992 43.478 0.00 0.00 0.00 3.18
5106 5155 3.996363 GGGGCATTCAATTTCAAGACAAC 59.004 43.478 0.00 0.00 0.00 3.32
5107 5156 3.996363 GGGCATTCAATTTCAAGACAACC 59.004 43.478 0.00 0.00 0.00 3.77
5108 5157 4.502950 GGGCATTCAATTTCAAGACAACCA 60.503 41.667 0.00 0.00 0.00 3.67
5109 5158 5.055812 GGCATTCAATTTCAAGACAACCAA 58.944 37.500 0.00 0.00 0.00 3.67
5110 5159 5.050159 GGCATTCAATTTCAAGACAACCAAC 60.050 40.000 0.00 0.00 0.00 3.77
5111 5160 5.050159 GCATTCAATTTCAAGACAACCAACC 60.050 40.000 0.00 0.00 0.00 3.77
5112 5161 5.930837 TTCAATTTCAAGACAACCAACCT 57.069 34.783 0.00 0.00 0.00 3.50
5113 5162 7.432869 CATTCAATTTCAAGACAACCAACCTA 58.567 34.615 0.00 0.00 0.00 3.08
5114 5163 6.633500 TCAATTTCAAGACAACCAACCTAG 57.367 37.500 0.00 0.00 0.00 3.02
5115 5164 6.361433 TCAATTTCAAGACAACCAACCTAGA 58.639 36.000 0.00 0.00 0.00 2.43
5116 5165 6.831353 TCAATTTCAAGACAACCAACCTAGAA 59.169 34.615 0.00 0.00 0.00 2.10
5117 5166 7.340743 TCAATTTCAAGACAACCAACCTAGAAA 59.659 33.333 0.00 0.00 0.00 2.52
5118 5167 6.445357 TTTCAAGACAACCAACCTAGAAAC 57.555 37.500 0.00 0.00 0.00 2.78
5119 5168 4.457466 TCAAGACAACCAACCTAGAAACC 58.543 43.478 0.00 0.00 0.00 3.27
5120 5169 4.080243 TCAAGACAACCAACCTAGAAACCA 60.080 41.667 0.00 0.00 0.00 3.67
5121 5170 4.724279 AGACAACCAACCTAGAAACCAT 57.276 40.909 0.00 0.00 0.00 3.55
5122 5171 5.061721 AGACAACCAACCTAGAAACCATT 57.938 39.130 0.00 0.00 0.00 3.16
5123 5172 5.070685 AGACAACCAACCTAGAAACCATTC 58.929 41.667 0.00 0.00 35.70 2.67
5124 5173 4.798882 ACAACCAACCTAGAAACCATTCA 58.201 39.130 0.00 0.00 38.06 2.57
5125 5174 5.393866 ACAACCAACCTAGAAACCATTCAT 58.606 37.500 0.00 0.00 38.06 2.57
5126 5175 5.838521 ACAACCAACCTAGAAACCATTCATT 59.161 36.000 0.00 0.00 38.06 2.57
5127 5176 6.015434 ACAACCAACCTAGAAACCATTCATTC 60.015 38.462 0.00 0.00 38.06 2.67
5128 5177 5.640147 ACCAACCTAGAAACCATTCATTCA 58.360 37.500 0.00 0.00 38.06 2.57
5129 5178 6.256053 ACCAACCTAGAAACCATTCATTCAT 58.744 36.000 0.00 0.00 38.06 2.57
5130 5179 6.153340 ACCAACCTAGAAACCATTCATTCATG 59.847 38.462 0.00 0.00 38.06 3.07
5132 5181 6.078456 ACCTAGAAACCATTCATTCATGGA 57.922 37.500 6.72 0.00 46.18 3.41
5136 5185 4.156556 AGAAACCATTCATTCATGGACGTG 59.843 41.667 6.72 0.00 46.18 4.49
5175 5224 1.668419 CAAGGACATTGGGATCGGAC 58.332 55.000 0.00 0.00 35.08 4.79
5254 5303 8.889717 CGGTGTTTCTTTATACATATTCTTGGT 58.110 33.333 0.00 0.00 0.00 3.67
5398 5447 2.159653 CCGTTGCAACAATACAGCTCTC 60.160 50.000 28.01 0.00 0.00 3.20
5399 5448 2.738846 CGTTGCAACAATACAGCTCTCT 59.261 45.455 28.01 0.00 0.00 3.10
5429 5478 1.218844 AAGTGGTAGGTGGTTGTGGT 58.781 50.000 0.00 0.00 0.00 4.16
5473 5522 3.390521 TTGAGGAGCACGCCGGAT 61.391 61.111 5.05 0.00 0.00 4.18
5643 5692 3.136809 TGGTGGCTTTGGTCTTACTGTTA 59.863 43.478 0.00 0.00 0.00 2.41
5696 5746 8.900983 AATTAATAAAATTGGCCGTATGCATT 57.099 26.923 3.54 0.00 43.89 3.56
5724 5774 1.766461 CAGAGGCCGGGGGTATTCT 60.766 63.158 2.18 0.00 0.00 2.40
5727 5777 1.004361 AGGCCGGGGGTATTCTTCT 59.996 57.895 2.18 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 9.628500 ACTCCACTTATATAATTTTCAAGGGAC 57.372 33.333 0.00 0.00 0.00 4.46
160 161 1.686052 CCAAACAAGCAGGTGCCTTTA 59.314 47.619 0.00 0.00 43.38 1.85
182 183 2.289072 CGACAAACAGATGAGAGGTGGT 60.289 50.000 0.00 0.00 0.00 4.16
241 242 4.938226 CAGAGGTTTTTATGAGACCTGGAC 59.062 45.833 0.00 0.00 43.59 4.02
549 551 9.143631 GGTTTTTGGTTCAGAAATCATGAATAG 57.856 33.333 0.00 0.00 38.81 1.73
627 629 1.404391 CAACATCTTGATGGCAGCTCC 59.596 52.381 14.18 0.00 0.00 4.70
628 630 1.202268 GCAACATCTTGATGGCAGCTC 60.202 52.381 14.18 0.00 0.00 4.09
788 790 0.413832 TCCCTCACTACTCCCTTGCT 59.586 55.000 0.00 0.00 0.00 3.91
1321 1325 3.942115 TCGTGTTTTTGGTCATCTTGTCA 59.058 39.130 0.00 0.00 0.00 3.58
1392 1396 2.568062 TGGCCATCGTTAGACCAAGTAA 59.432 45.455 0.00 0.00 0.00 2.24
1671 1675 2.820787 AGTTGTGGTGTGGAACGAAAAA 59.179 40.909 0.00 0.00 42.39 1.94
1761 1767 6.783892 TTAATTCCTGCTGCAAATTGAAAC 57.216 33.333 18.00 0.00 0.00 2.78
1767 1773 5.414454 TCGTACTTTAATTCCTGCTGCAAAT 59.586 36.000 3.02 0.00 0.00 2.32
1782 1788 7.444299 AGTGAAAATAAGTGGGTCGTACTTTA 58.556 34.615 0.00 0.00 39.06 1.85
1789 1795 4.755123 ACTGAAGTGAAAATAAGTGGGTCG 59.245 41.667 0.00 0.00 0.00 4.79
1857 1863 0.881118 CCACGTTAGCCATGCAAGTT 59.119 50.000 0.00 0.00 0.00 2.66
1971 1977 7.891183 AGGAAACATGTGGGTACAATAATAACA 59.109 33.333 0.00 0.00 40.84 2.41
2052 2058 3.215975 CTGGAACTGGAACCCGTAAAAA 58.784 45.455 0.00 0.00 0.00 1.94
2053 2059 2.173143 ACTGGAACTGGAACCCGTAAAA 59.827 45.455 0.00 0.00 0.00 1.52
2057 2063 0.108019 GAACTGGAACTGGAACCCGT 59.892 55.000 0.00 0.00 0.00 5.28
2127 2134 4.274459 GCAGCAATAGTGTGAATTCCCTAG 59.726 45.833 2.27 0.00 0.00 3.02
2135 2142 6.367686 CTGATTATGCAGCAATAGTGTGAA 57.632 37.500 0.00 0.00 0.00 3.18
2184 2191 1.875514 TGCACATCAAGTCTGAGCAAC 59.124 47.619 0.00 0.00 37.29 4.17
2253 2260 8.128322 ACACTGATTAGTCACAAGTAAGAGAT 57.872 34.615 0.00 0.00 34.07 2.75
2422 2429 0.104855 TCCACCGATACATCTGCAGC 59.895 55.000 9.47 0.00 0.00 5.25
2584 2591 4.887071 TGAGCAAGTTGTTAGACCAACATT 59.113 37.500 4.48 0.00 46.38 2.71
2587 2594 4.127171 TCTGAGCAAGTTGTTAGACCAAC 58.873 43.478 4.48 0.00 44.00 3.77
2653 2660 3.755378 GTGAGTTCAGATGGTGCTTCATT 59.245 43.478 0.00 0.00 0.00 2.57
2689 2696 1.909986 TGTCATATCCGGGTTGACCAA 59.090 47.619 20.33 6.72 39.17 3.67
2695 2702 2.844348 AGAGGTTTGTCATATCCGGGTT 59.156 45.455 0.00 0.00 0.00 4.11
2931 2938 4.021916 CAAGATCTTCCTTGGGAATTGCT 58.978 43.478 4.57 0.00 41.23 3.91
2942 2949 4.470664 ACATGAAGCTCTCAAGATCTTCCT 59.529 41.667 16.79 7.90 43.12 3.36
3106 3113 7.381678 GTGATACGAGTAACTGTTTGGGATATC 59.618 40.741 0.00 0.00 0.00 1.63
3122 3129 5.906113 AGAATCAGTCAAGTGATACGAGT 57.094 39.130 0.88 0.00 36.07 4.18
3134 3141 3.990469 GCTTGAAGTCGAAGAATCAGTCA 59.010 43.478 0.00 0.00 39.69 3.41
3195 3202 5.757808 TGTTTCACATGAAGTCGAAGAATCA 59.242 36.000 0.00 0.00 39.69 2.57
3213 3220 8.150296 TGATCTTCTCTCTGTATTTGTGTTTCA 58.850 33.333 0.00 0.00 0.00 2.69
3215 3222 8.944029 CATGATCTTCTCTCTGTATTTGTGTTT 58.056 33.333 0.00 0.00 0.00 2.83
3249 3256 2.307392 TGGGATTGTCGATTCCTCCAAA 59.693 45.455 10.64 0.00 34.08 3.28
3278 3285 2.484264 GGTGAAAATTCTCGACCACCAG 59.516 50.000 0.00 0.00 42.50 4.00
3351 3358 3.075882 TCATGGTCCTGTTGATTCCCTTT 59.924 43.478 0.00 0.00 0.00 3.11
3453 3460 1.230324 GTCTTGGTCTGTGCAGTTCC 58.770 55.000 0.00 4.61 0.00 3.62
3563 3570 8.859090 ACACAATTGAAAAGGAGATACATCAAA 58.141 29.630 13.59 0.00 31.37 2.69
3699 3709 3.324993 CACCTTCTCAGCTTTCTCAGAC 58.675 50.000 0.00 0.00 0.00 3.51
3702 3712 1.349026 CCCACCTTCTCAGCTTTCTCA 59.651 52.381 0.00 0.00 0.00 3.27
3736 3746 8.915654 GGTTTCTGAATTTTCAATATCACACAC 58.084 33.333 0.00 0.00 36.64 3.82
3746 3756 8.825745 GCAAATAGTTGGTTTCTGAATTTTCAA 58.174 29.630 4.91 0.00 34.41 2.69
3766 3776 7.784633 TCATATCACACGATTTCTGCAAATA 57.215 32.000 0.00 0.00 31.94 1.40
3827 3843 6.567687 ACAGAGTCCTATGATGAGTATTCG 57.432 41.667 0.00 0.00 0.00 3.34
3832 3848 6.322712 GGAAGTAACAGAGTCCTATGATGAGT 59.677 42.308 0.00 0.00 0.00 3.41
3847 3863 0.326264 AGCCTGCTGGGAAGTAACAG 59.674 55.000 12.06 0.00 37.23 3.16
3909 3949 5.427481 TCAAACTCTATTACCACCCCTAAGG 59.573 44.000 0.00 0.00 43.78 2.69
3910 3950 6.383147 TCTCAAACTCTATTACCACCCCTAAG 59.617 42.308 0.00 0.00 0.00 2.18
3911 3951 6.266080 TCTCAAACTCTATTACCACCCCTAA 58.734 40.000 0.00 0.00 0.00 2.69
3912 3952 5.845734 TCTCAAACTCTATTACCACCCCTA 58.154 41.667 0.00 0.00 0.00 3.53
3913 3953 4.695606 TCTCAAACTCTATTACCACCCCT 58.304 43.478 0.00 0.00 0.00 4.79
3915 3955 7.939784 AAATTCTCAAACTCTATTACCACCC 57.060 36.000 0.00 0.00 0.00 4.61
4022 4062 6.819146 GGTCTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 34.13 4.30
4023 4063 6.500751 AGGTCTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 34.13 4.20
4024 4064 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
4025 4065 7.878127 TCAAGGTCTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 34.13 3.69
4026 4066 8.833231 TCAAGGTCTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 34.13 3.35
4027 4067 9.273016 CTTCAAGGTCTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 34.13 3.41
4028 4068 9.273016 TCTTCAAGGTCTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 34.13 3.16
4029 4069 9.052759 GTCTTCAAGGTCTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 34.13 3.18
4030 4070 9.052759 TGTCTTCAAGGTCTTATAAAAGTGAAC 57.947 33.333 0.00 0.00 34.13 3.18
4031 4071 9.793259 ATGTCTTCAAGGTCTTATAAAAGTGAA 57.207 29.630 0.00 0.00 34.13 3.18
4032 4072 9.793259 AATGTCTTCAAGGTCTTATAAAAGTGA 57.207 29.630 0.00 0.00 34.13 3.41
4038 4078 9.436957 GTCTGAAATGTCTTCAAGGTCTTATAA 57.563 33.333 0.00 0.00 0.00 0.98
4039 4079 8.593679 TGTCTGAAATGTCTTCAAGGTCTTATA 58.406 33.333 0.00 0.00 0.00 0.98
4040 4080 7.453393 TGTCTGAAATGTCTTCAAGGTCTTAT 58.547 34.615 0.00 0.00 0.00 1.73
4041 4081 6.826668 TGTCTGAAATGTCTTCAAGGTCTTA 58.173 36.000 0.00 0.00 0.00 2.10
4042 4082 5.684704 TGTCTGAAATGTCTTCAAGGTCTT 58.315 37.500 0.00 0.00 0.00 3.01
4043 4083 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
4044 4084 6.016777 ACATTGTCTGAAATGTCTTCAAGGTC 60.017 38.462 10.41 0.00 45.47 3.85
4045 4085 5.829924 ACATTGTCTGAAATGTCTTCAAGGT 59.170 36.000 10.41 0.00 45.47 3.50
4046 4086 6.323203 ACATTGTCTGAAATGTCTTCAAGG 57.677 37.500 10.41 0.00 45.47 3.61
4047 4087 7.864686 TGTACATTGTCTGAAATGTCTTCAAG 58.135 34.615 16.13 0.00 45.47 3.02
4048 4088 7.800155 TGTACATTGTCTGAAATGTCTTCAA 57.200 32.000 16.13 0.18 45.47 2.69
4049 4089 7.800155 TTGTACATTGTCTGAAATGTCTTCA 57.200 32.000 16.13 12.76 45.47 3.02
4050 4090 8.958043 GTTTTGTACATTGTCTGAAATGTCTTC 58.042 33.333 16.13 11.26 45.47 2.87
4051 4091 8.465999 TGTTTTGTACATTGTCTGAAATGTCTT 58.534 29.630 16.13 2.61 45.47 3.01
4052 4092 7.995289 TGTTTTGTACATTGTCTGAAATGTCT 58.005 30.769 16.13 3.09 45.47 3.41
4053 4093 7.096477 GCTGTTTTGTACATTGTCTGAAATGTC 60.096 37.037 16.13 11.24 45.47 3.06
4055 4095 6.144402 GGCTGTTTTGTACATTGTCTGAAATG 59.856 38.462 0.00 9.50 42.21 2.32
4056 4096 6.215845 GGCTGTTTTGTACATTGTCTGAAAT 58.784 36.000 0.00 0.00 35.85 2.17
4057 4097 5.451242 GGGCTGTTTTGTACATTGTCTGAAA 60.451 40.000 0.00 0.00 35.85 2.69
4058 4098 4.037446 GGGCTGTTTTGTACATTGTCTGAA 59.963 41.667 0.00 0.00 35.85 3.02
4059 4099 3.568007 GGGCTGTTTTGTACATTGTCTGA 59.432 43.478 0.00 0.00 35.85 3.27
4060 4100 3.317711 TGGGCTGTTTTGTACATTGTCTG 59.682 43.478 0.00 0.00 35.85 3.51
4061 4101 3.561143 TGGGCTGTTTTGTACATTGTCT 58.439 40.909 0.00 0.00 35.85 3.41
4062 4102 4.519540 ATGGGCTGTTTTGTACATTGTC 57.480 40.909 0.00 0.00 35.85 3.18
4063 4103 4.953940 AATGGGCTGTTTTGTACATTGT 57.046 36.364 0.00 0.00 35.85 2.71
4064 4104 5.757320 TCAAAATGGGCTGTTTTGTACATTG 59.243 36.000 19.52 0.00 43.52 2.82
4065 4105 5.923204 TCAAAATGGGCTGTTTTGTACATT 58.077 33.333 19.52 0.00 43.52 2.71
4066 4106 5.070313 ACTCAAAATGGGCTGTTTTGTACAT 59.930 36.000 19.52 7.99 43.52 2.29
4067 4107 4.404073 ACTCAAAATGGGCTGTTTTGTACA 59.596 37.500 19.52 0.00 43.52 2.90
4068 4108 4.944048 ACTCAAAATGGGCTGTTTTGTAC 58.056 39.130 19.52 0.00 43.52 2.90
4069 4109 5.105146 ACAACTCAAAATGGGCTGTTTTGTA 60.105 36.000 19.52 10.81 43.52 2.41
4070 4110 4.190772 CAACTCAAAATGGGCTGTTTTGT 58.809 39.130 19.52 6.52 43.52 2.83
4071 4111 4.190772 ACAACTCAAAATGGGCTGTTTTG 58.809 39.130 16.38 16.38 44.10 2.44
4072 4112 4.162131 AGACAACTCAAAATGGGCTGTTTT 59.838 37.500 0.00 0.00 0.00 2.43
4073 4113 3.706086 AGACAACTCAAAATGGGCTGTTT 59.294 39.130 0.00 0.00 0.00 2.83
4074 4114 3.068590 CAGACAACTCAAAATGGGCTGTT 59.931 43.478 0.00 0.00 0.00 3.16
4075 4115 2.624838 CAGACAACTCAAAATGGGCTGT 59.375 45.455 0.00 0.00 0.00 4.40
4076 4116 2.886523 TCAGACAACTCAAAATGGGCTG 59.113 45.455 0.00 0.00 0.00 4.85
4077 4117 3.228188 TCAGACAACTCAAAATGGGCT 57.772 42.857 0.00 0.00 0.00 5.19
4078 4118 4.320608 TTTCAGACAACTCAAAATGGGC 57.679 40.909 0.00 0.00 0.00 5.36
4079 4119 5.922544 GTCATTTCAGACAACTCAAAATGGG 59.077 40.000 0.00 0.00 37.16 4.00
4080 4120 6.742109 AGTCATTTCAGACAACTCAAAATGG 58.258 36.000 0.00 0.00 40.98 3.16
4081 4121 9.173939 GTAAGTCATTTCAGACAACTCAAAATG 57.826 33.333 0.00 0.00 40.98 2.32
4082 4122 8.902806 TGTAAGTCATTTCAGACAACTCAAAAT 58.097 29.630 0.00 0.00 40.98 1.82
4083 4123 8.275015 TGTAAGTCATTTCAGACAACTCAAAA 57.725 30.769 0.00 0.00 40.98 2.44
4084 4124 7.857734 TGTAAGTCATTTCAGACAACTCAAA 57.142 32.000 0.00 0.00 40.98 2.69
4085 4125 7.857734 TTGTAAGTCATTTCAGACAACTCAA 57.142 32.000 0.00 0.00 40.98 3.02
4086 4126 7.857734 TTTGTAAGTCATTTCAGACAACTCA 57.142 32.000 0.00 0.00 40.98 3.41
4087 4127 8.398665 ACTTTTGTAAGTCATTTCAGACAACTC 58.601 33.333 0.00 0.00 40.60 3.01
4088 4128 8.184192 CACTTTTGTAAGTCATTTCAGACAACT 58.816 33.333 0.00 0.00 42.67 3.16
4089 4129 8.181573 TCACTTTTGTAAGTCATTTCAGACAAC 58.818 33.333 0.00 0.00 42.67 3.32
4090 4130 8.275015 TCACTTTTGTAAGTCATTTCAGACAA 57.725 30.769 0.00 0.00 42.67 3.18
4091 4131 7.857734 TCACTTTTGTAAGTCATTTCAGACA 57.142 32.000 0.00 0.00 42.67 3.41
4092 4132 7.373441 CGTTCACTTTTGTAAGTCATTTCAGAC 59.627 37.037 0.00 0.00 42.67 3.51
4093 4133 7.406553 CGTTCACTTTTGTAAGTCATTTCAGA 58.593 34.615 0.00 0.00 42.67 3.27
4094 4134 6.632834 CCGTTCACTTTTGTAAGTCATTTCAG 59.367 38.462 0.00 0.00 42.67 3.02
4095 4135 6.316640 TCCGTTCACTTTTGTAAGTCATTTCA 59.683 34.615 0.00 0.00 42.67 2.69
4096 4136 6.721321 TCCGTTCACTTTTGTAAGTCATTTC 58.279 36.000 0.00 0.00 42.67 2.17
4097 4137 6.238648 CCTCCGTTCACTTTTGTAAGTCATTT 60.239 38.462 0.00 0.00 42.67 2.32
4098 4138 5.238650 CCTCCGTTCACTTTTGTAAGTCATT 59.761 40.000 0.00 0.00 42.67 2.57
4099 4139 4.755123 CCTCCGTTCACTTTTGTAAGTCAT 59.245 41.667 0.00 0.00 42.67 3.06
4100 4140 4.124238 CCTCCGTTCACTTTTGTAAGTCA 58.876 43.478 0.00 0.00 42.67 3.41
4101 4141 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
4102 4142 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
4103 4143 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
4104 4144 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
4105 4145 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
4106 4146 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
4107 4147 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
4108 4148 2.970640 ACTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
4109 4149 2.606378 ACTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
4110 4150 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
4111 4151 3.446442 TTACTACTCCCTCCGTTCACT 57.554 47.619 0.00 0.00 0.00 3.41
4112 4152 4.732672 AATTACTACTCCCTCCGTTCAC 57.267 45.455 0.00 0.00 0.00 3.18
4113 4153 6.608405 TGAATAATTACTACTCCCTCCGTTCA 59.392 38.462 0.00 0.00 0.00 3.18
4114 4154 7.047460 TGAATAATTACTACTCCCTCCGTTC 57.953 40.000 0.00 0.00 0.00 3.95
4115 4155 7.613551 ATGAATAATTACTACTCCCTCCGTT 57.386 36.000 0.00 0.00 0.00 4.44
4116 4156 7.613551 AATGAATAATTACTACTCCCTCCGT 57.386 36.000 0.00 0.00 0.00 4.69
4117 4157 8.904099 AAAATGAATAATTACTACTCCCTCCG 57.096 34.615 0.00 0.00 0.00 4.63
4496 4536 0.318120 TGAACAGATGCGCAGTCTCA 59.682 50.000 18.32 11.07 0.00 3.27
4649 4689 3.744942 CGCCACCAGATATGAGATTCTTG 59.255 47.826 0.00 0.00 0.00 3.02
4755 4801 1.487452 GCACTTGTCTGAACACGCGA 61.487 55.000 15.93 0.00 34.35 5.87
4820 4866 6.389091 TGTCTGCAATGAATAATGTTGTTCC 58.611 36.000 0.00 0.00 0.00 3.62
4982 5031 4.967442 GGAACAGAGGGGGTAGTTTATAGT 59.033 45.833 0.00 0.00 0.00 2.12
5020 5069 7.566569 TCCGTCCCATAATATAGTGTCAAAAA 58.433 34.615 0.00 0.00 0.00 1.94
5021 5070 7.127012 TCCGTCCCATAATATAGTGTCAAAA 57.873 36.000 0.00 0.00 0.00 2.44
5022 5071 6.239487 CCTCCGTCCCATAATATAGTGTCAAA 60.239 42.308 0.00 0.00 0.00 2.69
5023 5072 5.245301 CCTCCGTCCCATAATATAGTGTCAA 59.755 44.000 0.00 0.00 0.00 3.18
5024 5073 4.770531 CCTCCGTCCCATAATATAGTGTCA 59.229 45.833 0.00 0.00 0.00 3.58
5025 5074 4.159879 CCCTCCGTCCCATAATATAGTGTC 59.840 50.000 0.00 0.00 0.00 3.67
5026 5075 4.094476 CCCTCCGTCCCATAATATAGTGT 58.906 47.826 0.00 0.00 0.00 3.55
5027 5076 4.350245 TCCCTCCGTCCCATAATATAGTG 58.650 47.826 0.00 0.00 0.00 2.74
5028 5077 4.045590 ACTCCCTCCGTCCCATAATATAGT 59.954 45.833 0.00 0.00 0.00 2.12
5029 5078 4.611367 ACTCCCTCCGTCCCATAATATAG 58.389 47.826 0.00 0.00 0.00 1.31
5030 5079 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5031 5080 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5032 5081 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
5033 5082 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
5034 5083 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
5035 5084 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
5036 5085 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
5037 5086 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
5038 5087 0.614134 ACAAGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
5039 5088 1.204231 GAACAAGTACTCCCTCCGTCC 59.796 57.143 0.00 0.00 0.00 4.79
5040 5089 1.891150 TGAACAAGTACTCCCTCCGTC 59.109 52.381 0.00 0.00 0.00 4.79
5041 5090 2.005370 TGAACAAGTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
5042 5091 3.522553 GAATGAACAAGTACTCCCTCCG 58.477 50.000 0.00 0.00 0.00 4.63
5043 5092 3.194968 TCGAATGAACAAGTACTCCCTCC 59.805 47.826 0.00 0.00 0.00 4.30
5044 5093 4.451629 TCGAATGAACAAGTACTCCCTC 57.548 45.455 0.00 0.00 0.00 4.30
5045 5094 5.422214 AATCGAATGAACAAGTACTCCCT 57.578 39.130 0.00 0.00 0.00 4.20
5046 5095 6.496338 AAAATCGAATGAACAAGTACTCCC 57.504 37.500 0.00 0.00 0.00 4.30
5047 5096 9.887406 TTTTAAAATCGAATGAACAAGTACTCC 57.113 29.630 0.00 0.00 0.00 3.85
5081 5130 0.248843 TTGAAATTGAATGCCCCCGC 59.751 50.000 0.00 0.00 0.00 6.13
5082 5131 1.824230 TCTTGAAATTGAATGCCCCCG 59.176 47.619 0.00 0.00 0.00 5.73
5083 5132 2.566724 TGTCTTGAAATTGAATGCCCCC 59.433 45.455 0.00 0.00 0.00 5.40
5084 5133 3.959535 TGTCTTGAAATTGAATGCCCC 57.040 42.857 0.00 0.00 0.00 5.80
5085 5134 3.996363 GGTTGTCTTGAAATTGAATGCCC 59.004 43.478 0.00 0.00 0.00 5.36
5086 5135 4.630111 TGGTTGTCTTGAAATTGAATGCC 58.370 39.130 0.00 0.00 0.00 4.40
5087 5136 5.050159 GGTTGGTTGTCTTGAAATTGAATGC 60.050 40.000 0.00 0.00 0.00 3.56
5088 5137 6.282930 AGGTTGGTTGTCTTGAAATTGAATG 58.717 36.000 0.00 0.00 0.00 2.67
5089 5138 6.484364 AGGTTGGTTGTCTTGAAATTGAAT 57.516 33.333 0.00 0.00 0.00 2.57
5090 5139 5.930837 AGGTTGGTTGTCTTGAAATTGAA 57.069 34.783 0.00 0.00 0.00 2.69
5091 5140 6.361433 TCTAGGTTGGTTGTCTTGAAATTGA 58.639 36.000 0.00 0.00 0.00 2.57
5092 5141 6.633500 TCTAGGTTGGTTGTCTTGAAATTG 57.367 37.500 0.00 0.00 0.00 2.32
5093 5142 7.417456 GGTTTCTAGGTTGGTTGTCTTGAAATT 60.417 37.037 0.00 0.00 35.79 1.82
5094 5143 6.040504 GGTTTCTAGGTTGGTTGTCTTGAAAT 59.959 38.462 0.00 0.00 35.79 2.17
5095 5144 5.358725 GGTTTCTAGGTTGGTTGTCTTGAAA 59.641 40.000 0.00 0.00 32.81 2.69
5096 5145 4.885325 GGTTTCTAGGTTGGTTGTCTTGAA 59.115 41.667 0.00 0.00 0.00 2.69
5097 5146 4.080243 TGGTTTCTAGGTTGGTTGTCTTGA 60.080 41.667 0.00 0.00 0.00 3.02
5098 5147 4.204012 TGGTTTCTAGGTTGGTTGTCTTG 58.796 43.478 0.00 0.00 0.00 3.02
5099 5148 4.513406 TGGTTTCTAGGTTGGTTGTCTT 57.487 40.909 0.00 0.00 0.00 3.01
5100 5149 4.724279 ATGGTTTCTAGGTTGGTTGTCT 57.276 40.909 0.00 0.00 0.00 3.41
5101 5150 4.825085 TGAATGGTTTCTAGGTTGGTTGTC 59.175 41.667 0.00 0.00 32.78 3.18
5102 5151 4.798882 TGAATGGTTTCTAGGTTGGTTGT 58.201 39.130 0.00 0.00 32.78 3.32
5103 5152 5.982890 ATGAATGGTTTCTAGGTTGGTTG 57.017 39.130 0.00 0.00 32.78 3.77
5104 5153 6.074648 TGAATGAATGGTTTCTAGGTTGGTT 58.925 36.000 0.00 0.00 32.78 3.67
5105 5154 5.640147 TGAATGAATGGTTTCTAGGTTGGT 58.360 37.500 0.00 0.00 32.78 3.67
5106 5155 6.406177 CCATGAATGAATGGTTTCTAGGTTGG 60.406 42.308 0.00 0.00 41.98 3.77
5107 5156 6.377996 TCCATGAATGAATGGTTTCTAGGTTG 59.622 38.462 0.00 0.00 46.24 3.77
5108 5157 6.378280 GTCCATGAATGAATGGTTTCTAGGTT 59.622 38.462 0.00 0.00 46.24 3.50
5109 5158 5.888161 GTCCATGAATGAATGGTTTCTAGGT 59.112 40.000 0.00 0.00 46.24 3.08
5110 5159 5.008019 CGTCCATGAATGAATGGTTTCTAGG 59.992 44.000 0.00 0.00 46.24 3.02
5111 5160 5.586243 ACGTCCATGAATGAATGGTTTCTAG 59.414 40.000 0.00 0.00 46.24 2.43
5112 5161 5.353956 CACGTCCATGAATGAATGGTTTCTA 59.646 40.000 0.00 0.00 46.24 2.10
5113 5162 4.156556 CACGTCCATGAATGAATGGTTTCT 59.843 41.667 0.00 0.00 46.24 2.52
5114 5163 4.155826 TCACGTCCATGAATGAATGGTTTC 59.844 41.667 0.00 0.00 46.24 2.78
5115 5164 4.078537 TCACGTCCATGAATGAATGGTTT 58.921 39.130 0.00 0.00 46.24 3.27
5116 5165 3.440173 GTCACGTCCATGAATGAATGGTT 59.560 43.478 0.00 0.00 46.24 3.67
5117 5166 3.009723 GTCACGTCCATGAATGAATGGT 58.990 45.455 0.00 0.00 46.24 3.55
5119 5168 3.273434 AGGTCACGTCCATGAATGAATG 58.727 45.455 0.00 0.00 0.00 2.67
5120 5169 3.634397 AGGTCACGTCCATGAATGAAT 57.366 42.857 0.00 0.00 0.00 2.57
5121 5170 3.334691 GAAGGTCACGTCCATGAATGAA 58.665 45.455 0.00 0.00 0.00 2.57
5122 5171 2.354704 GGAAGGTCACGTCCATGAATGA 60.355 50.000 0.00 0.00 43.73 2.57
5123 5172 2.009774 GGAAGGTCACGTCCATGAATG 58.990 52.381 0.00 0.00 43.73 2.67
5124 5173 1.909302 AGGAAGGTCACGTCCATGAAT 59.091 47.619 0.00 0.00 46.28 2.57
5125 5174 1.001974 CAGGAAGGTCACGTCCATGAA 59.998 52.381 0.00 0.00 46.28 2.57
5126 5175 0.608130 CAGGAAGGTCACGTCCATGA 59.392 55.000 0.00 0.00 46.28 3.07
5127 5176 0.391661 CCAGGAAGGTCACGTCCATG 60.392 60.000 2.75 0.00 46.28 3.66
5128 5177 0.544357 TCCAGGAAGGTCACGTCCAT 60.544 55.000 2.75 0.00 46.28 3.41
5129 5178 1.152419 TCCAGGAAGGTCACGTCCA 60.152 57.895 2.75 0.00 46.28 4.02
5130 5179 1.592223 CTCCAGGAAGGTCACGTCC 59.408 63.158 0.00 0.00 44.50 4.79
5131 5180 1.592223 CCTCCAGGAAGGTCACGTC 59.408 63.158 0.00 0.00 39.02 4.34
5132 5181 2.584391 GCCTCCAGGAAGGTCACGT 61.584 63.158 0.00 0.00 38.79 4.49
5136 5185 2.579738 GTCGCCTCCAGGAAGGTC 59.420 66.667 0.00 0.40 38.79 3.85
5175 5224 0.818296 CTCACCTACAGACCCTTCCG 59.182 60.000 0.00 0.00 0.00 4.30
5388 5437 6.782000 ACTTATCCATCTTCAGAGAGCTGTAT 59.218 38.462 0.00 0.00 42.84 2.29
5398 5447 5.453903 CCACCTACCACTTATCCATCTTCAG 60.454 48.000 0.00 0.00 0.00 3.02
5399 5448 4.408921 CCACCTACCACTTATCCATCTTCA 59.591 45.833 0.00 0.00 0.00 3.02
5643 5692 7.916914 AGCATAAAACCTTACAAAGTCGTAT 57.083 32.000 0.00 0.00 0.00 3.06
5696 5746 1.444672 CGGCCTCTGCATCTGATCA 59.555 57.895 0.00 0.00 40.13 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.